Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204130 | XP_024632339.1 | 90.093 | 646 | 46 | 5 | 6 | 638 | 16 | 656 | 0.0 | 1092 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204130 | sp|Q3ECY6|SDG41_ARATH | 37.539 | 642 | 298 | 23 | 3 | 626 | 1 | 557 | 2.22e-109 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204130 | G7IQD7 | 89.815 | 648 | 46 | 6 | 6 | 638 | 16 | 658 | 0.0 | 1088 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0204130 | TR | SET |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204130 | MtrunA17_Chr2g0302141 | 89.815 | 648 | 46 | 6 | 6 | 638 | 16 | 658 | 0.0 | 1088 |
| Msa0204130 | MtrunA17_Chr3g0108341 | 85.417 | 96 | 11 | 2 | 138 | 232 | 1 | 94 | 3.24e-47 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204130 | AT1G43245.1 | 37.539 | 642 | 298 | 23 | 3 | 626 | 1 | 557 | 2.25e-110 | 343 |
| Msa0204130 | AT1G43245.2 | 38.407 | 565 | 272 | 19 | 3 | 549 | 1 | 507 | 3.73e-102 | 322 |
Find 151 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAACATATGGAGGTTTAT+TGG | 0.183713 | 2_1:+28981808 | Msa0204130:CDS |
| GAGTATCAAGAGAATTAAAA+AGG | 0.208923 | 2_1:+28979321 | Msa0204130:CDS |
| GTCTCTGAAGAACTTGTAAT+TGG | 0.243344 | 2_1:-28980946 | None:intergenic |
| AGGGGAGGTTGGTGTGGAGG+AGG | 0.255907 | 2_1:-28978184 | None:intergenic |
| GCTAGTGATTTATTATTATC+TGG | 0.262604 | 2_1:+28981188 | Msa0204130:CDS |
| AAGCAGAAAAGAAGAAGAAT+TGG | 0.268928 | 2_1:-28978513 | None:intergenic |
| TTTAGAGCCTGTATGTTAAA+TGG | 0.281071 | 2_1:+28981488 | Msa0204130:CDS |
| ATGCTGTAAGTGGTCATTAA+TGG | 0.283977 | 2_1:+28981460 | Msa0204130:CDS |
| GTTGTTTGTGGAGATTCTTC+TGG | 0.289700 | 2_1:+28980915 | Msa0204130:CDS |
| CCATTCCCATTTGGTTTCTC+AGG | 0.299180 | 2_1:+28981850 | Msa0204130:CDS |
| TTATTGGCTTGTTTATGTTA+TGG | 0.303052 | 2_1:+28981824 | Msa0204130:CDS |
| GGGAGGGGAGGTTGGTGTGG+AGG | 0.312955 | 2_1:-28978187 | None:intergenic |
| GGTTGGTGTGGAGGAGGAGG+CGG | 0.313175 | 2_1:-28978178 | None:intergenic |
| AAGGGGAGGGGAGGTTGGTG+TGG | 0.315012 | 2_1:-28978190 | None:intergenic |
| CTTACTCCATCCTGAACTTC+TGG | 0.315654 | 2_1:-28981384 | None:intergenic |
| CCGCAGGAGGGAGGAGGTGG+AGG | 0.316632 | 2_1:-28978147 | None:intergenic |
| GGAGGTTGGTGTGGAGGAGG+AGG | 0.327979 | 2_1:-28978181 | None:intergenic |
| GAATGGAGCAATGCGAAGTT+TGG | 0.328300 | 2_1:-28978546 | None:intergenic |
| TGGTGTGGAGGAGGAGGCGG+AGG | 0.330806 | 2_1:-28978175 | None:intergenic |
| GGATTATTGGGATTGGGATT+GGG | 0.334654 | 2_1:-28978041 | None:intergenic |
| TGAGGCGAGTGGAAGGGGAG+GGG | 0.336054 | 2_1:-28978202 | None:intergenic |
| TTAACTCTTACCAGAAGTTC+AGG | 0.346116 | 2_1:+28981374 | Msa0204130:CDS |
| GCAATGCGAAGTTTGGATTC+AGG | 0.350610 | 2_1:-28978539 | None:intergenic |
| GAGAATCGGTAGCACGCATT+AGG | 0.352494 | 2_1:-28978485 | None:intergenic |
| TGCAAGGACCCTATCAATTT+CGG | 0.353888 | 2_1:+28981626 | Msa0204130:CDS |
| AGGGAGGAGGTGGAGGAGGA+AGG | 0.355753 | 2_1:-28978140 | None:intergenic |
| TAAGTTTCTTAACGTTGATT+TGG | 0.357600 | 2_1:+28981403 | Msa0204130:CDS |
| AGAATCGGTAGCACGCATTA+GGG | 0.360985 | 2_1:-28978484 | None:intergenic |
| ATTACCCAGCCGAAATTGAT+AGG | 0.361279 | 2_1:-28981635 | None:intergenic |
| TTGGGATTGGGAATGGGAGG+TGG | 0.365487 | 2_1:-28978029 | None:intergenic |
| GGGAGGAGGTGGAGGAGGAA+GGG | 0.365772 | 2_1:-28978139 | None:intergenic |
| GGAGGCGGAGGGCGGTCCGC+AGG | 0.365827 | 2_1:-28978163 | None:intergenic |
| GGGATTATTGGGATTGGGAT+TGG | 0.367645 | 2_1:-28978042 | None:intergenic |
| GGTCCGCAGGAGGGAGGAGG+TGG | 0.375005 | 2_1:-28978150 | None:intergenic |
| CGGGTTCATGATATCAAAAC+TGG | 0.380520 | 2_1:+28981683 | Msa0204130:CDS |
| GGCGAGTGGAAGGGGAGGGG+AGG | 0.387106 | 2_1:-28978199 | None:intergenic |
| GATGGTGTTCGGCGGAGGAG+AGG | 0.388453 | 2_1:-28978115 | None:intergenic |
| TTGGGATTGGGATTGGGAAT+GGG | 0.391750 | 2_1:-28978035 | None:intergenic |
| GGCGGTCCGCAGGAGGGAGG+AGG | 0.394141 | 2_1:-28978153 | None:intergenic |
| TTATGGTCCCCATTCCCATT+TGG | 0.394634 | 2_1:+28981841 | Msa0204130:CDS |
| CAGGAGGGAGGAGGTGGAGG+AGG | 0.400734 | 2_1:-28978144 | None:intergenic |
| AATGGGAGGTTGAGCAGTGA+AGG | 0.406431 | 2_1:-28978082 | None:intergenic |
| AGTGGAAGGGGAGGGGAGGT+TGG | 0.410862 | 2_1:-28978195 | None:intergenic |
| GTGATTGAGGCGAGTGGAAG+GGG | 0.412177 | 2_1:-28978207 | None:intergenic |
| GTGGAGGAGGAGGCGGAGGG+CGG | 0.414326 | 2_1:-28978171 | None:intergenic |
| TGAAGGGAGCAGTAGTGAAT+GGG | 0.415875 | 2_1:-28978065 | None:intergenic |
| GGCGGAGGGCGGTCCGCAGG+AGG | 0.418221 | 2_1:-28978160 | None:intergenic |
| AGGTGGAGGAGGAAGGGAGA+TGG | 0.419148 | 2_1:-28978133 | None:intergenic |
| ATGGTGTTCGGCGGAGGAGA+GGG | 0.419578 | 2_1:-28978114 | None:intergenic |
| CGGACGTTACTCGTAATGTT+TGG | 0.429780 | 2_1:+28981567 | Msa0204130:CDS |
| TTTGAACCTGAGAAACCAAA+TGG | 0.430256 | 2_1:-28981856 | None:intergenic |
| GGAGGAAGGGAGATGGTGTT+CGG | 0.431867 | 2_1:-28978126 | None:intergenic |
| AAGAGAGTGGAGTGAGTGGT+GGG | 0.433053 | 2_1:-28977947 | None:intergenic |
| CTGAGAAACCAAATGGGAAT+GGG | 0.436237 | 2_1:-28981849 | None:intergenic |
| GAGGGCGGTCCGCAGGAGGG+AGG | 0.436901 | 2_1:-28978156 | None:intergenic |
| GTGAAGGGAGCAGTAGTGAA+TGG | 0.439390 | 2_1:-28978066 | None:intergenic |
| ATTGGGATTGGGATTGGGAA+TGG | 0.440461 | 2_1:-28978036 | None:intergenic |
| GGTGTACATTGCTTAACATA+TGG | 0.441977 | 2_1:+28981797 | Msa0204130:CDS |
| AAGAATTGGAGAAGGAGAAT+CGG | 0.451919 | 2_1:-28978499 | None:intergenic |
| ATTTAGAGAGAGGTGGTGAA+GGG | 0.459642 | 2_1:-28981129 | None:intergenic |
| AAGTGATTGAGGCGAGTGGA+AGG | 0.461563 | 2_1:-28978209 | None:intergenic |
| AAAGAGAGTGGAGTGAGTGG+TGG | 0.470027 | 2_1:-28977948 | None:intergenic |
| GATTTGACCATTTAACATAC+AGG | 0.472029 | 2_1:-28981495 | None:intergenic |
| CAGCAACGACGGTGGAACTC+TGG | 0.473272 | 2_1:+28978337 | Msa0204130:CDS |
| TGAAGCGTACCTTTGGCTGC+AGG | 0.473765 | 2_1:-28979375 | None:intergenic |
| AATTTAGAGAGAGGTGGTGA+AGG | 0.475466 | 2_1:-28981130 | None:intergenic |
| TATAACATCTTCAATGGAAT+CGG | 0.475841 | 2_1:-28980988 | None:intergenic |
| AGGGAGATGGTGTTCGGCGG+AGG | 0.479047 | 2_1:-28978120 | None:intergenic |
| CTCTGATATAACATCTTCAA+TGG | 0.482382 | 2_1:-28980994 | None:intergenic |
| GAGAAAGAGAGTGGAGTGAG+TGG | 0.483450 | 2_1:-28977951 | None:intergenic |
| CTCATCTTTGACAATGGAGC+TGG | 0.485018 | 2_1:+28977881 | Msa0204130:exon |
| CCGCCTCGGCGCACATGCCA+TGG | 0.485074 | 2_1:+28978286 | Msa0204130:CDS |
| GGATTGGGATTGGGAATGGG+AGG | 0.485446 | 2_1:-28978032 | None:intergenic |
| AGTGATTGAGGCGAGTGGAA+GGG | 0.490478 | 2_1:-28978208 | None:intergenic |
| AGGACCCTATCAATTTCGGC+TGG | 0.493252 | 2_1:+28981630 | Msa0204130:CDS |
| CAAACTCTCATCTTTGACAA+TGG | 0.498289 | 2_1:+28977875 | Msa0204130:exon |
| CATGAATCTGTGAATTGCAT+TGG | 0.498860 | 2_1:+28981719 | Msa0204130:CDS |
| ATTGAGGCGAGTGGAAGGGG+AGG | 0.499805 | 2_1:-28978204 | None:intergenic |
| TCATATCAAAAGCTTTCGAT+TGG | 0.502770 | 2_1:-28981232 | None:intergenic |
| GATAACGAAGGATGCGCACT+CGG | 0.503690 | 2_1:+28978413 | Msa0204130:CDS |
| TTGTGGAGAGAGAAAGAGAG+TGG | 0.504148 | 2_1:-28977960 | None:intergenic |
| TTGAGGCGAGTGGAAGGGGA+GGG | 0.511949 | 2_1:-28978203 | None:intergenic |
| CCTGAGAAACCAAATGGGAA+TGG | 0.514430 | 2_1:-28981850 | None:intergenic |
| CTCTCTGCCCTTCACATACG+TGG | 0.515200 | 2_1:+28980699 | Msa0204130:CDS |
| GCGGAGGGCGGTCCGCAGGA+GGG | 0.521045 | 2_1:-28978159 | None:intergenic |
| TGTCAGAAGCAAGGTTTGAA+AGG | 0.521753 | 2_1:-28981427 | None:intergenic |
| CATTGAGACAATCGGAACTC+TGG | 0.527768 | 2_1:+28980638 | Msa0204130:CDS |
| GGTGTAGACGAGCAGCTAGA+AGG | 0.527981 | 2_1:+28981077 | Msa0204130:CDS |
| CAGGAAATATCTGTTGTTTG+TGG | 0.531040 | 2_1:+28980903 | Msa0204130:intron |
| AAGAGCAGTGAGTGTGGAGA+TGG | 0.532014 | 2_1:-28977986 | None:intergenic |
| AAAAGAAGAAGAATTGGAGA+AGG | 0.532521 | 2_1:-28978507 | None:intergenic |
| AACATGAAGAGCAGTGAGTG+TGG | 0.535051 | 2_1:-28977992 | None:intergenic |
| CAAAATTTAAATGCTGTAAG+TGG | 0.537765 | 2_1:+28981450 | Msa0204130:CDS |
| TTTGAGATGTTAGTAAATGA+CGG | 0.540262 | 2_1:-28978241 | None:intergenic |
| CGGAACTCTGGTCAAAGTAT+CGG | 0.540461 | 2_1:+28980650 | Msa0204130:CDS |
| GGTGTTCGGCGGAGGAGAGG+GGG | 0.543730 | 2_1:-28978112 | None:intergenic |
| TGGTGTTCGGCGGAGGAGAG+GGG | 0.544723 | 2_1:-28978113 | None:intergenic |
| ATATCAGAGTACCTTTCAGT+TGG | 0.546568 | 2_1:+28981008 | Msa0204130:CDS |
| GTTTGGAGTTTCCTTGTCGA+TGG | 0.547503 | 2_1:+28981584 | Msa0204130:CDS |
| AAGGGAGCAGTAGTGAATGG+GGG | 0.551100 | 2_1:-28978063 | None:intergenic |
| ATACTCCTCACTATCAACCT+TGG | 0.555428 | 2_1:-28979304 | None:intergenic |
| ATAACGAAGGATGCGCACTC+GGG | 0.558272 | 2_1:+28978414 | Msa0204130:CDS |
| GAGTGTGGAGATGGGTGTTG+TGG | 0.563240 | 2_1:-28977977 | None:intergenic |
| CCATGGCATGTGCGCCGAGG+CGG | 0.565262 | 2_1:-28978286 | None:intergenic |
| CGGCCATGGCATGTGCGCCG+AGG | 0.566251 | 2_1:-28978289 | None:intergenic |
| TTTAGAGAGAGGTGGTGAAG+GGG | 0.570529 | 2_1:-28981128 | None:intergenic |
| AGAGCAGTGAGTGTGGAGAT+GGG | 0.571832 | 2_1:-28977985 | None:intergenic |
| TTTATGATCCACGTATGTGA+AGG | 0.575433 | 2_1:-28980707 | None:intergenic |
| TTGAACCTGAGAAACCAAAT+GGG | 0.577631 | 2_1:-28981855 | None:intergenic |
| CCTCCACCTCCTCCCTCCTG+CGG | 0.579273 | 2_1:+28978147 | Msa0204130:CDS |
| ATAATAATAAATCACTAGCT+CGG | 0.579328 | 2_1:-28981184 | None:intergenic |
| AGAGAGTGGAGTGAGTGGTG+GGG | 0.579721 | 2_1:-28977946 | None:intergenic |
| CTCTTACCAGAAGTTCAGGA+TGG | 0.580229 | 2_1:+28981378 | Msa0204130:CDS |
| AGATGTTAGTAAATGACGGT+TGG | 0.581031 | 2_1:-28978237 | None:intergenic |
| TTCGTTATCATGCACCTCCA+CGG | 0.590186 | 2_1:-28978399 | None:intergenic |
| CTCGAGAAGATTCTCATCGA+AGG | 0.595787 | 2_1:+28981056 | Msa0204130:CDS |
| AGCGTACCTTTGGCTGCAGG+AGG | 0.596286 | 2_1:-28979372 | None:intergenic |
| AGGATGCGCACTCGGGATTG+CGG | 0.596707 | 2_1:+28978421 | Msa0204130:CDS |
| ATGGGAGGTTGAGCAGTGAA+GGG | 0.596728 | 2_1:-28978081 | None:intergenic |
| ATGCAGAATCACCAACTGAA+AGG | 0.598509 | 2_1:-28981019 | None:intergenic |
| GAAGGGAGCAGTAGTGAATG+GGG | 0.598831 | 2_1:-28978064 | None:intergenic |
| GGTGTGGAGGAGGAGGCGGA+GGG | 0.603274 | 2_1:-28978174 | None:intergenic |
| GGCGGATGATCTGTGGTCCA+AGG | 0.604951 | 2_1:+28979287 | Msa0204130:CDS |
| TTATGATCCACGTATGTGAA+GGG | 0.607337 | 2_1:-28980706 | None:intergenic |
| GTACATTGCTTAACATATGG+AGG | 0.607730 | 2_1:+28981800 | Msa0204130:CDS |
| TGAGTTCATTCATTCTGACT+CGG | 0.610393 | 2_1:+28981547 | Msa0204130:CDS |
| GTGGCGGAAACTATCCGCCT+CGG | 0.610695 | 2_1:+28978272 | Msa0204130:CDS |
| TCATATAGCAATTTAGAGAG+AGG | 0.611256 | 2_1:-28981139 | None:intergenic |
| CGACGGTGGAACTCTGGAGG+AGG | 0.612445 | 2_1:+28978343 | Msa0204130:CDS |
| GAGTGGTGGGGTTATGTCTG+TGG | 0.613700 | 2_1:-28977934 | None:intergenic |
| TACTGACCTCCTGCAGCCAA+AGG | 0.614009 | 2_1:+28979366 | Msa0204130:CDS |
| AACGGTTGCAGCAACGACGG+TGG | 0.616294 | 2_1:+28978329 | Msa0204130:CDS |
| GGACCCTATCAATTTCGGCT+GGG | 0.618597 | 2_1:+28981631 | Msa0204130:CDS |
| GCCGCAATAGAAAAGCAAAA+CGG | 0.619986 | 2_1:+28978311 | Msa0204130:CDS |
| GAATCGGTAGCACGCATTAG+GGG | 0.621644 | 2_1:-28978483 | None:intergenic |
| ATCTCAAAATGACGAAGTGG+CGG | 0.621659 | 2_1:+28978256 | Msa0204130:CDS |
| GTGGTCCAAGGTTGATAGTG+AGG | 0.621949 | 2_1:+28979299 | Msa0204130:CDS |
| CAACGACGGTGGAACTCTGG+AGG | 0.622332 | 2_1:+28978340 | Msa0204130:CDS |
| TGAGAAACCAAATGGGAATG+GGG | 0.624351 | 2_1:-28981848 | None:intergenic |
| TTACCCAGCCGAAATTGATA+GGG | 0.626489 | 2_1:-28981634 | None:intergenic |
| CACTGCACAGAGAGCAACAG+TGG | 0.631178 | 2_1:-28978366 | None:intergenic |
| CAAAACGGTTGCAGCAACGA+CGG | 0.632961 | 2_1:+28978326 | Msa0204130:CDS |
| GGTTGGTGAGTAAGTGATTG+AGG | 0.634271 | 2_1:-28978220 | None:intergenic |
| AACATCTCAAAATGACGAAG+TGG | 0.639089 | 2_1:+28978253 | Msa0204130:CDS |
| GAGTAAGTGATTGAGGCGAG+TGG | 0.640563 | 2_1:-28978213 | None:intergenic |
| AGGGAGCAGTAGTGAATGGG+GGG | 0.646802 | 2_1:-28978062 | None:intergenic |
| TATAGCAATTTAGAGAGAGG+TGG | 0.656702 | 2_1:-28981136 | None:intergenic |
| GGAAGGGAGATGGTGTTCGG+CGG | 0.663405 | 2_1:-28978123 | None:intergenic |
| TGCAGTGCTGACTAACTCCG+TGG | 0.682116 | 2_1:+28978382 | Msa0204130:CDS |
| GTGGAGGTGCATGATAACGA+AGG | 0.689334 | 2_1:+28978401 | Msa0204130:CDS |
| AGTGCTGACTAACTCCGTGG+AGG | 0.731209 | 2_1:+28978385 | Msa0204130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTAAATTGTTTTATATA+AGG | - | chr2_1:28978949-28978968 | None:intergenic | 10.0% |
| !! | TAACTTGATGAATTAATTTA+GGG | + | chr2_1:28979099-28979118 | Msa0204130:intron | 15.0% |
| !! | TTGTAAAAATTAATTAACTG+AGG | + | chr2_1:28979241-28979260 | Msa0204130:intron | 15.0% |
| !! | ATATATGCAGTATTTATAAA+TGG | + | chr2_1:28979821-28979840 | Msa0204130:intron | 15.0% |
| !!! | ATTTTTAGTTTAACCTTTAT+TGG | + | chr2_1:28980018-28980037 | Msa0204130:intron | 15.0% |
| !! | AAAGATAATATCCATTAAAA+AGG | - | chr2_1:28980236-28980255 | None:intergenic | 15.0% |
| !! | CTAACTTGATGAATTAATTT+AGG | + | chr2_1:28979098-28979117 | Msa0204130:intron | 20.0% |
| !! | TTATTACATGTCTATAGTTT+AGG | + | chr2_1:28979127-28979146 | Msa0204130:intron | 20.0% |
| !! | AGTTGTGTAAAGATTTAATT+CGG | - | chr2_1:28979186-28979205 | None:intergenic | 20.0% |
| !!! | ATGTTTTCCATGAAAAAAAA+GGG | + | chr2_1:28979266-28979285 | Msa0204130:intron | 20.0% |
| !! | AGTATCAAGAGAATTAAAAA+GGG | + | chr2_1:28979322-28979341 | Msa0204130:CDS | 20.0% |
| !! | TATAAATACTGCATATATCT+AGG | - | chr2_1:28979819-28979838 | None:intergenic | 20.0% |
| !! | ACAATTTCATCTAATTTATG+AGG | - | chr2_1:28980483-28980502 | None:intergenic | 20.0% |
| !! | AATGATAAATTAAGAAGTGA+AGG | - | chr2_1:28980577-28980596 | None:intergenic | 20.0% |
| !! | CTAATATTGTATTATTGTTC+AGG | + | chr2_1:28980884-28980903 | Msa0204130:intron | 20.0% |
| !! | ATAATAATAAATCACTAGCT+CGG | - | chr2_1:28981187-28981206 | None:intergenic | 20.0% |
| !! | AATGTCTAAAAAAAATTCAC+TGG | + | chr2_1:28981655-28981674 | Msa0204130:CDS | 20.0% |
| !! | TTTGAGATGTTAGTAAATGA+CGG | - | chr2_1:28978244-28978263 | None:intergenic | 25.0% |
| ! | TGTTTGGATATACAACTTAT+TGG | - | chr2_1:28979025-28979044 | None:intergenic | 25.0% |
| !! | AGATAGGAAATTTAAGGTTA+GGG | - | chr2_1:28979051-28979070 | None:intergenic | 25.0% |
| !!! | CACTAGTTACTTTTCAAAAT+GGG | - | chr2_1:28979076-28979095 | None:intergenic | 25.0% |
| !! | GATGTTTTCCATGAAAAAAA+AGG | + | chr2_1:28979265-28979284 | Msa0204130:intron | 25.0% |
| ! | GAGTATCAAGAGAATTAAAA+AGG | + | chr2_1:28979321-28979340 | Msa0204130:CDS | 25.0% |
| ! | TTGTTAAGAGCTAAACTAAA+AGG | + | chr2_1:28979458-28979477 | Msa0204130:intron | 25.0% |
| ! | AAACTAAAAGGATTTCAGTA+CGG | + | chr2_1:28979470-28979489 | Msa0204130:intron | 25.0% |
| ! | AAAGGAATAATTATATGCTG+TGG | + | chr2_1:28979652-28979671 | Msa0204130:intron | 25.0% |
| ! | TTAGTTTAACCTTTATTGGT+TGG | + | chr2_1:28980022-28980041 | Msa0204130:intron | 25.0% |
| ! | TTCAAGATATAATCTTTCCA+AGG | - | chr2_1:28980288-28980307 | None:intergenic | 25.0% |
| !! | ATGGATAGTTCTATATTCAA+AGG | - | chr2_1:28980323-28980342 | None:intergenic | 25.0% |
| ! | TTCATGAATACAATGACAAT+AGG | - | chr2_1:28980380-28980399 | None:intergenic | 25.0% |
| ! | AATTCCCTAAATTCGTATAT+TGG | - | chr2_1:28980413-28980432 | None:intergenic | 25.0% |
| !!! | ATTGATATTCTAGCTTAGTT+AGG | + | chr2_1:28980749-28980768 | Msa0204130:intron | 25.0% |
| ! | TCTATGAAATGTTTAACGAA+AGG | - | chr2_1:28980779-28980798 | None:intergenic | 25.0% |
| !! | ACATTTCATAGAAGTTCTAA+CGG | + | chr2_1:28980787-28980806 | Msa0204130:intron | 25.0% |
| !! | TACAATATTAGTTTCACTTC+CGG | - | chr2_1:28980875-28980894 | None:intergenic | 25.0% |
| ! | TATAACATCTTCAATGGAAT+CGG | - | chr2_1:28980991-28981010 | None:intergenic | 25.0% |
| ! | GCTAGTGATTTATTATTATC+TGG | + | chr2_1:28981188-28981207 | Msa0204130:CDS | 25.0% |
| !! | TAAGTTTCTTAACGTTGATT+TGG | + | chr2_1:28981403-28981422 | Msa0204130:CDS | 25.0% |
| ! | CAAAATTTAAATGCTGTAAG+TGG | + | chr2_1:28981450-28981469 | Msa0204130:CDS | 25.0% |
| !!! | CAATTTTTTGAAATCATGCA+AGG | + | chr2_1:28981610-28981629 | Msa0204130:CDS | 25.0% |
| ! | AAAAAAATTCACTGGATGTT+CGG | + | chr2_1:28981663-28981682 | Msa0204130:CDS | 25.0% |
| !!! | TTATTGGCTTGTTTATGTTA+TGG | + | chr2_1:28981824-28981843 | Msa0204130:CDS | 25.0% |
| ! | TTTTTGAACATGCTTTCTCT+TGG | + | chr2_1:28978444-28978463 | Msa0204130:CDS | 30.0% |
| AAAAGAAGAAGAATTGGAGA+AGG | - | chr2_1:28978510-28978529 | None:intergenic | 30.0% | |
| AAGCAGAAAAGAAGAAGAAT+TGG | - | chr2_1:28978516-28978535 | None:intergenic | 30.0% | |
| !! | TGTTGAGAATTTTGAGTGAA+TGG | - | chr2_1:28978566-28978585 | None:intergenic | 30.0% |
| ! | GAGATAGGAAATTTAAGGTT+AGG | - | chr2_1:28979052-28979071 | None:intergenic | 30.0% |
| !!! | CCACTAGTTACTTTTCAAAA+TGG | - | chr2_1:28979077-28979096 | None:intergenic | 30.0% |
| !! | CCATTTTGAAAAGTAACTAG+TGG | + | chr2_1:28979074-28979093 | Msa0204130:intron | 30.0% |
| ! | TCTATAGTTTAGGACCAAAT+TGG | + | chr2_1:28979137-28979156 | Msa0204130:intron | 30.0% |
| AATGATTACTCTGTCCAATT+TGG | - | chr2_1:28979154-28979173 | None:intergenic | 30.0% | |
| GACAGAGTAATCATTATTGA+GGG | + | chr2_1:28979159-28979178 | Msa0204130:intron | 30.0% | |
| ! | TTTTCCATGAAAAAAAAGGG+CGG | + | chr2_1:28979269-28979288 | Msa0204130:intron | 30.0% |
| ! | ATTAATTTGAAGCGTACCTT+TGG | - | chr2_1:28979385-28979404 | None:intergenic | 30.0% |
| ACTAGCAATCTCATAATTCT+AGG | - | chr2_1:28979772-28979791 | None:intergenic | 30.0% | |
| GAATTAAGTCAAACATGGTA+TGG | - | chr2_1:28979847-28979866 | None:intergenic | 30.0% | |
| TCATGGAATTAAGTCAAACA+TGG | - | chr2_1:28979852-28979871 | None:intergenic | 30.0% | |
| AATTCCATGAGTTTAGACTT+TGG | + | chr2_1:28979862-28979881 | Msa0204130:intron | 30.0% | |
| ACATCATTTATCACTGTCAT+TGG | - | chr2_1:28979969-28979988 | None:intergenic | 30.0% | |
| ACTTGTATACCAACCAATAA+AGG | - | chr2_1:28980034-28980053 | None:intergenic | 30.0% | |
| ! | TATTGGTTGGTATACAAGTA+TGG | + | chr2_1:28980035-28980054 | Msa0204130:intron | 30.0% |
| GTAGAGAAAATTAATGATGC+TGG | + | chr2_1:28980083-28980102 | Msa0204130:intron | 30.0% | |
| TTTGTTCTATAACATCACCT+TGG | + | chr2_1:28980268-28980287 | Msa0204130:intron | 30.0% | |
| TGTGCCAATATACGAATTTA+GGG | + | chr2_1:28980406-28980425 | Msa0204130:intron | 30.0% | |
| TTAGGGAATTGTCCATTAAA+AGG | + | chr2_1:28980423-28980442 | Msa0204130:intron | 30.0% | |
| ! | TTCTAGTCTCAAGTTGTATT+TGG | + | chr2_1:28980605-28980624 | Msa0204130:intron | 30.0% |
| ! | AAGTTGTATTTGGCATTTTC+AGG | + | chr2_1:28980615-28980634 | Msa0204130:intron | 30.0% |
| ! | ATATTACAGAGAGCATATCT+GGG | - | chr2_1:28980823-28980842 | None:intergenic | 30.0% |
| ! | ACAATATTAGTTTCACTTCC+GGG | - | chr2_1:28980874-28980893 | None:intergenic | 30.0% |
| CTCTGATATAACATCTTCAA+TGG | - | chr2_1:28980997-28981016 | None:intergenic | 30.0% | |
| TCATATAGCAATTTAGAGAG+AGG | - | chr2_1:28981142-28981161 | None:intergenic | 30.0% | |
| TCATATCAAAAGCTTTCGAT+TGG | - | chr2_1:28981235-28981254 | None:intergenic | 30.0% | |
| TAACAAAAAATATGCAGCAC+TGG | - | chr2_1:28981264-28981283 | None:intergenic | 30.0% | |
| !!! | TGCTGCATATTTTTTGTTAC+TGG | + | chr2_1:28981265-28981284 | Msa0204130:CDS | 30.0% |
| ! | TTGCATCAGTTGCTAATTTT+TGG | + | chr2_1:28981330-28981349 | Msa0204130:CDS | 30.0% |
| !! | TCAGTTGCTAATTTTTGGAT+AGG | + | chr2_1:28981335-28981354 | Msa0204130:CDS | 30.0% |
| ! | TAAATTTTGTGTCAGAAGCA+AGG | - | chr2_1:28981439-28981458 | None:intergenic | 30.0% |
| ! | TTTAGAGCCTGTATGTTAAA+TGG | + | chr2_1:28981488-28981507 | Msa0204130:CDS | 30.0% |
| GATTTGACCATTTAACATAC+AGG | - | chr2_1:28981498-28981517 | None:intergenic | 30.0% | |
| AAAAAATTCACTGGATGTTC+GGG | + | chr2_1:28981664-28981683 | Msa0204130:CDS | 30.0% | |
| !! | GTAACACATATTTTTCAGCT+TGG | + | chr2_1:28981776-28981795 | Msa0204130:CDS | 30.0% |
| CTTAACATATGGAGGTTTAT+TGG | + | chr2_1:28981808-28981827 | Msa0204130:CDS | 30.0% | |
| CAAACTCTCATCTTTGACAA+TGG | + | chr2_1:28977875-28977894 | Msa0204130:exon | 35.0% | |
| AGATGTTAGTAAATGACGGT+TGG | - | chr2_1:28978240-28978259 | None:intergenic | 35.0% | |
| AACATCTCAAAATGACGAAG+TGG | + | chr2_1:28978253-28978272 | Msa0204130:CDS | 35.0% | |
| !! | ACCGTTTTGCTTTTCTATTG+CGG | - | chr2_1:28978315-28978334 | None:intergenic | 35.0% |
| AAGAATTGGAGAAGGAGAAT+CGG | - | chr2_1:28978502-28978521 | None:intergenic | 35.0% | |
| ! | CAGATAGATTGTGGTGTTTT+TGG | + | chr2_1:28978681-28978700 | Msa0204130:intron | 35.0% |
| CAGTCTCAAAAAACACCTTA+AGG | - | chr2_1:28978827-28978846 | None:intergenic | 35.0% | |
| ! | TTTAAGGTTAGGGCAATGTT+TGG | - | chr2_1:28979041-28979060 | None:intergenic | 35.0% |
| TGGGAGAGATAGGAAATTTA+AGG | - | chr2_1:28979057-28979076 | None:intergenic | 35.0% | |
| ! | CTTTTCAAAATGGGAGAGAT+AGG | - | chr2_1:28979067-28979086 | None:intergenic | 35.0% |
| GGACAGAGTAATCATTATTG+AGG | + | chr2_1:28979158-28979177 | Msa0204130:intron | 35.0% | |
| GAGAATTAAAAAGGGAGAAG+AGG | + | chr2_1:28979330-28979349 | Msa0204130:CDS | 35.0% | |
| ! | AGTTTTTCACGCATTCTAGT+TGG | + | chr2_1:28979417-28979436 | Msa0204130:intron | 35.0% |
| ATAGCAACAGTGTGAATAGA+TGG | + | chr2_1:28979683-28979702 | Msa0204130:intron | 35.0% | |
| GAATAGATGGAATGTTGCAA+TGG | + | chr2_1:28979696-28979715 | Msa0204130:intron | 35.0% | |
| ATGGACATTGATACACAAAG+AGG | - | chr2_1:28979930-28979949 | None:intergenic | 35.0% | |
| GACAGTGATAAATGATGTTG+TGG | + | chr2_1:28979971-28979990 | Msa0204130:intron | 35.0% | |
| TGAGACAAGCTACATAAAAG+AGG | - | chr2_1:28980150-28980169 | None:intergenic | 35.0% | |
| ! | TATGTAGCTTGTCTCAATTC+TGG | + | chr2_1:28980154-28980173 | Msa0204130:intron | 35.0% |
| CATTAAAAAGGAGATGCAGT+AGG | - | chr2_1:28980224-28980243 | None:intergenic | 35.0% | |
| ! | CTACTGCATCTCCTTTTTAA+TGG | + | chr2_1:28980222-28980241 | Msa0204130:intron | 35.0% |
| CATATATGCTACAAACTGAG+TGG | - | chr2_1:28980346-28980365 | None:intergenic | 35.0% | |
| GTGTGCCAATATACGAATTT+AGG | + | chr2_1:28980405-28980424 | Msa0204130:intron | 35.0% | |
| ! | GCTGATAACTGTCCTTTTAA+TGG | - | chr2_1:28980438-28980457 | None:intergenic | 35.0% |
| !!! | TTTTCAGGCATTGAGACAAT+CGG | + | chr2_1:28980630-28980649 | Msa0204130:intron | 35.0% |
| TTATGATCCACGTATGTGAA+GGG | - | chr2_1:28980709-28980728 | None:intergenic | 35.0% | |
| TTTATGATCCACGTATGTGA+AGG | - | chr2_1:28980710-28980729 | None:intergenic | 35.0% | |
| TGAAATGTTTAACGAAAGGC+TGG | - | chr2_1:28980775-28980794 | None:intergenic | 35.0% | |
| ! | TATTACAGAGAGCATATCTG+GGG | - | chr2_1:28980822-28980841 | None:intergenic | 35.0% |
| ! | CATATTACAGAGAGCATATC+TGG | - | chr2_1:28980824-28980843 | None:intergenic | 35.0% |
| ATAAATATTCGTGACTCACC+CGG | + | chr2_1:28980853-28980872 | Msa0204130:intron | 35.0% | |
| ! | CAGGAAATATCTGTTGTTTG+TGG | + | chr2_1:28980903-28980922 | Msa0204130:intron | 35.0% |
| ! | GTCTCTGAAGAACTTGTAAT+TGG | - | chr2_1:28980949-28980968 | None:intergenic | 35.0% |
| ! | ATATCAGAGTACCTTTCAGT+TGG | + | chr2_1:28981008-28981027 | Msa0204130:CDS | 35.0% |
| TATAGCAATTTAGAGAGAGG+TGG | - | chr2_1:28981139-28981158 | None:intergenic | 35.0% | |
| !!! | GCATATTTTTTGTTACTGGC+AGG | + | chr2_1:28981269-28981288 | Msa0204130:CDS | 35.0% |
| TTAACTCTTACCAGAAGTTC+AGG | + | chr2_1:28981374-28981393 | Msa0204130:CDS | 35.0% | |
| ATGCTGTAAGTGGTCATTAA+TGG | + | chr2_1:28981460-28981479 | Msa0204130:CDS | 35.0% | |
| TGAGTTCATTCATTCTGACT+CGG | + | chr2_1:28981547-28981566 | Msa0204130:CDS | 35.0% | |
| AAAAATTGCAACCATCGACA+AGG | - | chr2_1:28981598-28981617 | None:intergenic | 35.0% | |
| CATGAATCTGTGAATTGCAT+TGG | + | chr2_1:28981719-28981738 | Msa0204130:CDS | 35.0% | |
| GGTGTACATTGCTTAACATA+TGG | + | chr2_1:28981797-28981816 | Msa0204130:CDS | 35.0% | |
| GTACATTGCTTAACATATGG+AGG | + | chr2_1:28981800-28981819 | Msa0204130:CDS | 35.0% | |
| TTGAACCTGAGAAACCAAAT+GGG | - | chr2_1:28981858-28981877 | None:intergenic | 35.0% | |
| TTTGAACCTGAGAAACCAAA+TGG | - | chr2_1:28981859-28981878 | None:intergenic | 35.0% | |
| GGATTATTGGGATTGGGATT+GGG | - | chr2_1:28978044-28978063 | None:intergenic | 40.0% | |
| TAGTGAATGGGGGGATTATT+GGG | - | chr2_1:28978056-28978075 | None:intergenic | 40.0% | |
| ATCTCAAAATGACGAAGTGG+CGG | + | chr2_1:28978256-28978275 | Msa0204130:CDS | 40.0% | |
| !! | GTTTTGCTTTTCTATTGCGG+CGG | - | chr2_1:28978312-28978331 | None:intergenic | 40.0% |
| GCCGCAATAGAAAAGCAAAA+CGG | + | chr2_1:28978311-28978330 | Msa0204130:CDS | 40.0% | |
| TGTGCTTTGCAGATAGATTG+TGG | + | chr2_1:28978672-28978691 | Msa0204130:intron | 40.0% | |
| CTTAAGGACATCAACACATG+TGG | - | chr2_1:28978800-28978819 | None:intergenic | 40.0% | |
| ! | CACATGTGTTGATGTCCTTA+AGG | + | chr2_1:28978798-28978817 | Msa0204130:intron | 40.0% |
| ! | ATGTCCTTAAGGTGTCCTTA+AGG | + | chr2_1:28978809-28978828 | Msa0204130:intron | 40.0% |
| AACACCTTAAGGACACCTTA+AGG | - | chr2_1:28978816-28978835 | None:intergenic | 40.0% | |
| !!! | TCATCCGCCCTTTTTTTTCA+TGG | - | chr2_1:28979276-28979295 | None:intergenic | 40.0% |
| ATACTCCTCACTATCAACCT+TGG | - | chr2_1:28979307-28979326 | None:intergenic | 40.0% | |
| AACAACCTCCAACAACACAT+TGG | - | chr2_1:28979443-28979462 | None:intergenic | 40.0% | |
| TTCAGTACGGCATTATGTGT+TGG | + | chr2_1:28979483-28979502 | Msa0204130:intron | 40.0% | |
| TTTGAGTCCAACACTTTGCT+TGG | + | chr2_1:28979508-28979527 | Msa0204130:intron | 40.0% | |
| TTGAGTCCAACACTTTGCTT+GGG | + | chr2_1:28979509-28979528 | Msa0204130:intron | 40.0% | |
| AGTGATAAACAACCAAGTCC+AGG | + | chr2_1:28979540-28979559 | Msa0204130:intron | 40.0% | |
| AGGTTGAAGAGGAGAAAGTA+CGG | + | chr2_1:28979560-28979579 | Msa0204130:intron | 40.0% | |
| CTGATAGTATCAAGCAGCAA+AGG | + | chr2_1:28979634-28979653 | Msa0204130:intron | 40.0% | |
| ! | TTACTAGCTGAAGCGAGTTT+TGG | + | chr2_1:28979729-28979748 | Msa0204130:intron | 40.0% |
| TTGCTAGTGTTTCAACCCAA+TGG | + | chr2_1:28979784-28979803 | Msa0204130:intron | 40.0% | |
| TGCTAGTGTTTCAACCCAAT+GGG | + | chr2_1:28979785-28979804 | Msa0204130:intron | 40.0% | |
| GTGTCCAAAGTCTAAACTCA+TGG | - | chr2_1:28979869-28979888 | None:intergenic | 40.0% | |
| ACACCTATGTTGCATACGAT+GGG | + | chr2_1:28979885-28979904 | Msa0204130:intron | 40.0% | |
| TTTCCCATCGTATGCAACAT+AGG | - | chr2_1:28979891-28979910 | None:intergenic | 40.0% | |
| TGGCTCATTGCTACAATCTA+TGG | - | chr2_1:28979949-28979968 | None:intergenic | 40.0% | |
| !! | GTTGTGGTTTGCTTCTTTGT+TGG | + | chr2_1:28979987-28980006 | Msa0204130:intron | 40.0% |
| TATGCTACAAACTGAGTGGA+TGG | - | chr2_1:28980342-28980361 | None:intergenic | 40.0% | |
| TCAAAGAAGAGCTGAGAAAG+AGG | - | chr2_1:28980551-28980570 | None:intergenic | 40.0% | |
| GTTGTTTGTGGAGATTCTTC+TGG | + | chr2_1:28980915-28980934 | Msa0204130:CDS | 40.0% | |
| ATGCAGAATCACCAACTGAA+AGG | - | chr2_1:28981022-28981041 | None:intergenic | 40.0% | |
| ATTTAGAGAGAGGTGGTGAA+GGG | - | chr2_1:28981132-28981151 | None:intergenic | 40.0% | |
| AATTTAGAGAGAGGTGGTGA+AGG | - | chr2_1:28981133-28981152 | None:intergenic | 40.0% | |
| ! | CGAAAGCTTTTGATATGAGC+AGG | + | chr2_1:28981237-28981256 | Msa0204130:CDS | 40.0% |
| !! | GCTAATTTTTGGATAGGAGC+TGG | + | chr2_1:28981341-28981360 | Msa0204130:CDS | 40.0% |
| TGTCAGAAGCAAGGTTTGAA+AGG | - | chr2_1:28981430-28981449 | None:intergenic | 40.0% | |
| TGCAAGGACCCTATCAATTT+CGG | + | chr2_1:28981626-28981645 | Msa0204130:CDS | 40.0% | |
| TTACCCAGCCGAAATTGATA+GGG | - | chr2_1:28981637-28981656 | None:intergenic | 40.0% | |
| ATTACCCAGCCGAAATTGAT+AGG | - | chr2_1:28981638-28981657 | None:intergenic | 40.0% | |
| CGGGTTCATGATATCAAAAC+TGG | + | chr2_1:28981683-28981702 | Msa0204130:CDS | 40.0% | |
| !!! | GCATTGGTTTTCGTGAAGAA+CGG | + | chr2_1:28981735-28981754 | Msa0204130:CDS | 40.0% |
| !!! | CATTGGTTTTCGTGAAGAAC+GGG | + | chr2_1:28981736-28981755 | Msa0204130:CDS | 40.0% |
| TGAGAAACCAAATGGGAATG+GGG | - | chr2_1:28981851-28981870 | None:intergenic | 40.0% | |
| CTGAGAAACCAAATGGGAAT+GGG | - | chr2_1:28981852-28981871 | None:intergenic | 40.0% | |
| CTCATCTTTGACAATGGAGC+TGG | + | chr2_1:28977881-28977900 | Msa0204130:exon | 45.0% | |
| TTGTGGAGAGAGAAAGAGAG+TGG | - | chr2_1:28977963-28977982 | None:intergenic | 45.0% | |
| AACATGAAGAGCAGTGAGTG+TGG | - | chr2_1:28977995-28978014 | None:intergenic | 45.0% | |
| TTGGGATTGGGATTGGGAAT+GGG | - | chr2_1:28978038-28978057 | None:intergenic | 45.0% | |
| ATTGGGATTGGGATTGGGAA+TGG | - | chr2_1:28978039-28978058 | None:intergenic | 45.0% | |
| GGGATTATTGGGATTGGGAT+TGG | - | chr2_1:28978045-28978064 | None:intergenic | 45.0% | |
| ATGGGGGGATTATTGGGATT+GGG | - | chr2_1:28978050-28978069 | None:intergenic | 45.0% | |
| AATGGGGGGATTATTGGGAT+TGG | - | chr2_1:28978051-28978070 | None:intergenic | 45.0% | |
| GTAGTGAATGGGGGGATTAT+TGG | - | chr2_1:28978057-28978076 | None:intergenic | 45.0% | |
| TGAAGGGAGCAGTAGTGAAT+GGG | - | chr2_1:28978068-28978087 | None:intergenic | 45.0% | |
| !! | GGTTGGTGAGTAAGTGATTG+AGG | - | chr2_1:28978223-28978242 | None:intergenic | 45.0% |
| TTCGTTATCATGCACCTCCA+CGG | - | chr2_1:28978402-28978421 | None:intergenic | 45.0% | |
| AGAATCGGTAGCACGCATTA+GGG | - | chr2_1:28978487-28978506 | None:intergenic | 45.0% | |
| GCAATGCGAAGTTTGGATTC+AGG | - | chr2_1:28978542-28978561 | None:intergenic | 45.0% | |
| GAATGGAGCAATGCGAAGTT+TGG | - | chr2_1:28978549-28978568 | None:intergenic | 45.0% | |
| AGCAGCAGTGAATTTGCACA+AGG | + | chr2_1:28978705-28978724 | Msa0204130:intron | 45.0% | |
| AAAAAAGGGCGGATGATCTG+TGG | + | chr2_1:28979280-28979299 | Msa0204130:intron | 45.0% | |
| CTAGTTGGCCAATGTGTTGT+TGG | + | chr2_1:28979432-28979451 | Msa0204130:intron | 45.0% | |
| CTCAATCCCAAGCAAAGTGT+TGG | - | chr2_1:28979518-28979537 | None:intergenic | 45.0% | |
| GTACTTTCTCCTCTTCAACC+TGG | - | chr2_1:28979561-28979580 | None:intergenic | 45.0% | |
| GACACCTATGTTGCATACGA+TGG | + | chr2_1:28979884-28979903 | Msa0204130:intron | 45.0% | |
| ATGATGCTGGTATCTGACAG+TGG | + | chr2_1:28980096-28980115 | Msa0204130:intron | 45.0% | |
| TGCAGTAGGTTCTCGGTATT+GGG | - | chr2_1:28980210-28980229 | None:intergenic | 45.0% | |
| ATGCAGTAGGTTCTCGGTAT+TGG | - | chr2_1:28980211-28980230 | None:intergenic | 45.0% | |
| AAGGAGATGCAGTAGGTTCT+CGG | - | chr2_1:28980217-28980236 | None:intergenic | 45.0% | |
| AAGAAGAGCTGAGAAAGAGG+AGG | - | chr2_1:28980548-28980567 | None:intergenic | 45.0% | |
| CATTGAGACAATCGGAACTC+TGG | + | chr2_1:28980638-28980657 | Msa0204130:CDS | 45.0% | |
| CGGAACTCTGGTCAAAGTAT+CGG | + | chr2_1:28980650-28980669 | Msa0204130:CDS | 45.0% | |
| CTCGAGAAGATTCTCATCGA+AGG | + | chr2_1:28981056-28981075 | Msa0204130:CDS | 45.0% | |
| TTTAGAGAGAGGTGGTGAAG+GGG | - | chr2_1:28981131-28981150 | None:intergenic | 45.0% | |
| CTCTTACCAGAAGTTCAGGA+TGG | + | chr2_1:28981378-28981397 | Msa0204130:CDS | 45.0% | |
| CTTACTCCATCCTGAACTTC+TGG | - | chr2_1:28981387-28981406 | None:intergenic | 45.0% | |
| CGGACGTTACTCGTAATGTT+TGG | + | chr2_1:28981567-28981586 | Msa0204130:CDS | 45.0% | |
| ! | GTTTGGAGTTTCCTTGTCGA+TGG | + | chr2_1:28981584-28981603 | Msa0204130:CDS | 45.0% |
| TTATGGTCCCCATTCCCATT+TGG | + | chr2_1:28981841-28981860 | Msa0204130:CDS | 45.0% | |
| CCTGAGAAACCAAATGGGAA+TGG | - | chr2_1:28981853-28981872 | None:intergenic | 45.0% | |
| ! | CCATTCCCATTTGGTTTCTC+AGG | + | chr2_1:28981850-28981869 | Msa0204130:CDS | 45.0% |
| AAGAGAGTGGAGTGAGTGGT+GGG | - | chr2_1:28977950-28977969 | None:intergenic | 50.0% | |
| AAAGAGAGTGGAGTGAGTGG+TGG | - | chr2_1:28977951-28977970 | None:intergenic | 50.0% | |
| GAGAAAGAGAGTGGAGTGAG+TGG | - | chr2_1:28977954-28977973 | None:intergenic | 50.0% | |
| AGAGCAGTGAGTGTGGAGAT+GGG | - | chr2_1:28977988-28978007 | None:intergenic | 50.0% | |
| AAGAGCAGTGAGTGTGGAGA+TGG | - | chr2_1:28977989-28978008 | None:intergenic | 50.0% | |
| AAGGGAGCAGTAGTGAATGG+GGG | - | chr2_1:28978066-28978085 | None:intergenic | 50.0% | |
| GAAGGGAGCAGTAGTGAATG+GGG | - | chr2_1:28978067-28978086 | None:intergenic | 50.0% | |
| GTGAAGGGAGCAGTAGTGAA+TGG | - | chr2_1:28978069-28978088 | None:intergenic | 50.0% | |
| ATGGGAGGTTGAGCAGTGAA+GGG | - | chr2_1:28978084-28978103 | None:intergenic | 50.0% | |
| AATGGGAGGTTGAGCAGTGA+AGG | - | chr2_1:28978085-28978104 | None:intergenic | 50.0% | |
| AGTGATTGAGGCGAGTGGAA+GGG | - | chr2_1:28978211-28978230 | None:intergenic | 50.0% | |
| AAGTGATTGAGGCGAGTGGA+AGG | - | chr2_1:28978212-28978231 | None:intergenic | 50.0% | |
| GAGTAAGTGATTGAGGCGAG+TGG | - | chr2_1:28978216-28978235 | None:intergenic | 50.0% | |
| CAAAACGGTTGCAGCAACGA+CGG | + | chr2_1:28978326-28978345 | Msa0204130:CDS | 50.0% | |
| ! | GTGGAGGTGCATGATAACGA+AGG | + | chr2_1:28978401-28978420 | Msa0204130:CDS | 50.0% |
| GATAACGAAGGATGCGCACT+CGG | + | chr2_1:28978413-28978432 | Msa0204130:CDS | 50.0% | |
| ATAACGAAGGATGCGCACTC+GGG | + | chr2_1:28978414-28978433 | Msa0204130:CDS | 50.0% | |
| GAATCGGTAGCACGCATTAG+GGG | - | chr2_1:28978486-28978505 | None:intergenic | 50.0% | |
| GAGAATCGGTAGCACGCATT+AGG | - | chr2_1:28978488-28978507 | None:intergenic | 50.0% | |
| !! | GTGGTCCAAGGTTGATAGTG+AGG | + | chr2_1:28979299-28979318 | Msa0204130:CDS | 50.0% |
| ! | GTTGGCCAATGTGTTGTTGG+AGG | + | chr2_1:28979435-28979454 | Msa0204130:intron | 50.0% |
| ! | CAACCAAGTCCAGGTTGAAG+AGG | + | chr2_1:28979549-28979568 | Msa0204130:intron | 50.0% |
| TCTCCTCTTCAACCTGGACT+TGG | - | chr2_1:28979555-28979574 | None:intergenic | 50.0% | |
| ! | TGTTTCAACCCAATGGGCTC+AGG | + | chr2_1:28979791-28979810 | Msa0204130:intron | 50.0% |
| ! | TCTAGGATCCTGAGCCCATT+GGG | - | chr2_1:28979802-28979821 | None:intergenic | 50.0% |
| ! | ATCTAGGATCCTGAGCCCAT+TGG | - | chr2_1:28979803-28979822 | None:intergenic | 50.0% |
| ATGCTGGTATCTGACAGTGG+TGG | + | chr2_1:28980099-28980118 | Msa0204130:intron | 50.0% | |
| ! | TAGGTTCTCGGTATTGGGCA+TGG | - | chr2_1:28980205-28980224 | None:intergenic | 50.0% |
| AGGACCCTATCAATTTCGGC+TGG | + | chr2_1:28981630-28981649 | Msa0204130:CDS | 50.0% | |
| GGACCCTATCAATTTCGGCT+GGG | + | chr2_1:28981631-28981650 | Msa0204130:CDS | 50.0% | |
| ! | GAGTGGTGGGGTTATGTCTG+TGG | - | chr2_1:28977937-28977956 | None:intergenic | 55.0% |
| AGAGAGTGGAGTGAGTGGTG+GGG | - | chr2_1:28977949-28977968 | None:intergenic | 55.0% | |
| ! | GAGTGTGGAGATGGGTGTTG+TGG | - | chr2_1:28977980-28977999 | None:intergenic | 55.0% |
| TTGGGATTGGGAATGGGAGG+TGG | - | chr2_1:28978032-28978051 | None:intergenic | 55.0% | |
| GGATTGGGATTGGGAATGGG+AGG | - | chr2_1:28978035-28978054 | None:intergenic | 55.0% | |
| AGGGAGCAGTAGTGAATGGG+GGG | - | chr2_1:28978065-28978084 | None:intergenic | 55.0% | |
| GGAGAGGGGGATTGAGGAAT+GGG | - | chr2_1:28978102-28978121 | None:intergenic | 55.0% | |
| AGGAGAGGGGGATTGAGGAA+TGG | - | chr2_1:28978103-28978122 | None:intergenic | 55.0% | |
| GGAGGAAGGGAGATGGTGTT+CGG | - | chr2_1:28978129-28978148 | None:intergenic | 55.0% | |
| GTGATTGAGGCGAGTGGAAG+GGG | - | chr2_1:28978210-28978229 | None:intergenic | 55.0% | |
| ! | CTTTTCTATTGCGGCGGCCA+TGG | - | chr2_1:28978306-28978325 | None:intergenic | 55.0% |
| CACTGCACAGAGAGCAACAG+TGG | - | chr2_1:28978369-28978388 | None:intergenic | 55.0% | |
| !! | TGCAGTGCTGACTAACTCCG+TGG | + | chr2_1:28978382-28978401 | Msa0204130:CDS | 55.0% |
| !! | AGTGCTGACTAACTCCGTGG+AGG | + | chr2_1:28978385-28978404 | Msa0204130:CDS | 55.0% |
| TACTGACCTCCTGCAGCCAA+AGG | + | chr2_1:28979366-28979385 | Msa0204130:CDS | 55.0% | |
| TGAAGCGTACCTTTGGCTGC+AGG | - | chr2_1:28979378-28979397 | None:intergenic | 55.0% | |
| CTCTCTGCCCTTCACATACG+TGG | + | chr2_1:28980699-28980718 | Msa0204130:CDS | 55.0% | |
| GGTGTAGACGAGCAGCTAGA+AGG | + | chr2_1:28981077-28981096 | Msa0204130:CDS | 55.0% | |
| GAGGGGGATTGAGGAATGGG+AGG | - | chr2_1:28978099-28978118 | None:intergenic | 60.0% | |
| ATGGTGTTCGGCGGAGGAGA+GGG | - | chr2_1:28978117-28978136 | None:intergenic | 60.0% | |
| GGAAGGGAGATGGTGTTCGG+CGG | - | chr2_1:28978126-28978145 | None:intergenic | 60.0% | |
| AGGTGGAGGAGGAAGGGAGA+TGG | - | chr2_1:28978136-28978155 | None:intergenic | 60.0% | |
| TTGAGGCGAGTGGAAGGGGA+GGG | - | chr2_1:28978206-28978225 | None:intergenic | 60.0% | |
| ATTGAGGCGAGTGGAAGGGG+AGG | - | chr2_1:28978207-28978226 | None:intergenic | 60.0% | |
| ! | GTGGCGGAAACTATCCGCCT+CGG | + | chr2_1:28978272-28978291 | Msa0204130:CDS | 60.0% |
| AACGGTTGCAGCAACGACGG+TGG | + | chr2_1:28978329-28978348 | Msa0204130:CDS | 60.0% | |
| CAGCAACGACGGTGGAACTC+TGG | + | chr2_1:28978337-28978356 | Msa0204130:CDS | 60.0% | |
| CAACGACGGTGGAACTCTGG+AGG | + | chr2_1:28978340-28978359 | Msa0204130:CDS | 60.0% | |
| AGGATGCGCACTCGGGATTG+CGG | + | chr2_1:28978421-28978440 | Msa0204130:CDS | 60.0% | |
| GGCGGATGATCTGTGGTCCA+AGG | + | chr2_1:28979287-28979306 | Msa0204130:CDS | 60.0% | |
| AGCGTACCTTTGGCTGCAGG+AGG | - | chr2_1:28979375-28979394 | None:intergenic | 60.0% | |
| TGGTGTTCGGCGGAGGAGAG+GGG | - | chr2_1:28978116-28978135 | None:intergenic | 65.0% | |
| GATGGTGTTCGGCGGAGGAG+AGG | - | chr2_1:28978118-28978137 | None:intergenic | 65.0% | |
| AGGGAGATGGTGTTCGGCGG+AGG | - | chr2_1:28978123-28978142 | None:intergenic | 65.0% | |
| GGGAGGAGGTGGAGGAGGAA+GGG | - | chr2_1:28978142-28978161 | None:intergenic | 65.0% | |
| AGGGAGGAGGTGGAGGAGGA+AGG | - | chr2_1:28978143-28978162 | None:intergenic | 65.0% | |
| ! | GGTTGGTGTGGAGGAGGAGG+CGG | - | chr2_1:28978181-28978200 | None:intergenic | 65.0% |
| !! | GGAGGTTGGTGTGGAGGAGG+AGG | - | chr2_1:28978184-28978203 | None:intergenic | 65.0% |
| !! | AGGGGAGGTTGGTGTGGAGG+AGG | - | chr2_1:28978187-28978206 | None:intergenic | 65.0% |
| !! | AAGGGGAGGGGAGGTTGGTG+TGG | - | chr2_1:28978193-28978212 | None:intergenic | 65.0% |
| AGTGGAAGGGGAGGGGAGGT+TGG | - | chr2_1:28978198-28978217 | None:intergenic | 65.0% | |
| TGAGGCGAGTGGAAGGGGAG+GGG | - | chr2_1:28978205-28978224 | None:intergenic | 65.0% | |
| ! | CGACGGTGGAACTCTGGAGG+AGG | + | chr2_1:28978343-28978362 | Msa0204130:CDS | 65.0% |
| GGCGGAGGAGAGGGGGATTG+AGG | - | chr2_1:28978108-28978127 | None:intergenic | 70.0% | |
| GGTGTTCGGCGGAGGAGAGG+GGG | - | chr2_1:28978115-28978134 | None:intergenic | 70.0% | |
| CAGGAGGGAGGAGGTGGAGG+AGG | - | chr2_1:28978147-28978166 | None:intergenic | 70.0% | |
| CCTCCACCTCCTCCCTCCTG+CGG | + | chr2_1:28978147-28978166 | Msa0204130:CDS | 70.0% | |
| GGTGTGGAGGAGGAGGCGGA+GGG | - | chr2_1:28978177-28978196 | None:intergenic | 70.0% | |
| TGGTGTGGAGGAGGAGGCGG+AGG | - | chr2_1:28978178-28978197 | None:intergenic | 70.0% | |
| !! | GGGAGGGGAGGTTGGTGTGG+AGG | - | chr2_1:28978190-28978209 | None:intergenic | 70.0% |
| CCATGGCATGTGCGCCGAGG+CGG | - | chr2_1:28978289-28978308 | None:intergenic | 70.0% | |
| CCGCAGGAGGGAGGAGGTGG+AGG | - | chr2_1:28978150-28978169 | None:intergenic | 75.0% | |
| GGTCCGCAGGAGGGAGGAGG+TGG | - | chr2_1:28978153-28978172 | None:intergenic | 75.0% | |
| GTGGAGGAGGAGGCGGAGGG+CGG | - | chr2_1:28978174-28978193 | None:intergenic | 75.0% | |
| GGCGAGTGGAAGGGGAGGGG+AGG | - | chr2_1:28978202-28978221 | None:intergenic | 75.0% | |
| CCGCCTCGGCGCACATGCCA+TGG | + | chr2_1:28978286-28978305 | Msa0204130:CDS | 75.0% | |
| CGGCCATGGCATGTGCGCCG+AGG | - | chr2_1:28978292-28978311 | None:intergenic | 75.0% | |
| ! | GGCGGTCCGCAGGAGGGAGG+AGG | - | chr2_1:28978156-28978175 | None:intergenic | 80.0% |
| ! | GAGGGCGGTCCGCAGGAGGG+AGG | - | chr2_1:28978159-28978178 | None:intergenic | 80.0% |
| ! | GCGGAGGGCGGTCCGCAGGA+GGG | - | chr2_1:28978162-28978181 | None:intergenic | 80.0% |
| ! | GGCGGAGGGCGGTCCGCAGG+AGG | - | chr2_1:28978163-28978182 | None:intergenic | 85.0% |
| ! | GGAGGCGGAGGGCGGTCCGC+AGG | - | chr2_1:28978166-28978185 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 28977870 | 28981916 | 28977870 | ID=Msa0204130;Name=Msa0204130 |
| chr2_1 | mRNA | 28977870 | 28981916 | 28977870 | ID=Msa0204130-mRNA-1;Parent=Msa0204130;Name=Msa0204130-mRNA-1;_AED=0.02;_eAED=0.02;_QI=24|0.75|0.6|1|0.5|0.8|5|0|638 |
| chr2_1 | exon | 28977870 | 28978592 | 28977870 | ID=Msa0204130-mRNA-1:exon:10390;Parent=Msa0204130-mRNA-1 |
| chr2_1 | exon | 28978684 | 28978690 | 28978684 | ID=Msa0204130-mRNA-1:exon:10391;Parent=Msa0204130-mRNA-1 |
| chr2_1 | exon | 28979287 | 28979387 | 28979287 | ID=Msa0204130-mRNA-1:exon:10392;Parent=Msa0204130-mRNA-1 |
| chr2_1 | exon | 28980637 | 28980735 | 28980637 | ID=Msa0204130-mRNA-1:exon:10393;Parent=Msa0204130-mRNA-1 |
| chr2_1 | exon | 28980906 | 28981916 | 28980906 | ID=Msa0204130-mRNA-1:exon:10394;Parent=Msa0204130-mRNA-1 |
| chr2_1 | five_prime_UTR | 28977870 | 28977893 | 28977870 | ID=Msa0204130-mRNA-1:five_prime_utr;Parent=Msa0204130-mRNA-1 |
| chr2_1 | CDS | 28977894 | 28978592 | 28977894 | ID=Msa0204130-mRNA-1:cds;Parent=Msa0204130-mRNA-1 |
| chr2_1 | CDS | 28978684 | 28978690 | 28978684 | ID=Msa0204130-mRNA-1:cds;Parent=Msa0204130-mRNA-1 |
| chr2_1 | CDS | 28979287 | 28979387 | 28979287 | ID=Msa0204130-mRNA-1:cds;Parent=Msa0204130-mRNA-1 |
| chr2_1 | CDS | 28980637 | 28980735 | 28980637 | ID=Msa0204130-mRNA-1:cds;Parent=Msa0204130-mRNA-1 |
| chr2_1 | CDS | 28980906 | 28981916 | 28980906 | ID=Msa0204130-mRNA-1:cds;Parent=Msa0204130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
