Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204350 | XP_039686054.1 | 88.163 | 245 | 28 | 1 | 3 | 247 | 2 | 245 | 1.69e-152 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204350 | sp|Q99091|CPRF3_PETCR | 40.860 | 93 | 52 | 1 | 152 | 241 | 183 | 275 | 6.40e-16 | 78.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204350 | G7IST9 | 81.818 | 264 | 30 | 2 | 1 | 247 | 19 | 281 | 7.38e-148 | 423 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0204350 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204350 | MtrunA17_Chr1g0162721 | 75.225 | 222 | 46 | 5 | 31 | 247 | 90 | 307 | 9.49e-106 | 308 |
| Msa0204350 | MtrunA17_Chr1g0162721 | 74.286 | 35 | 9 | 0 | 4 | 38 | 3 | 37 | 1.61e-13 | 68.9 |
| Msa0204350 | MtrunA17_Chr2g0302481 | 66.667 | 210 | 44 | 2 | 38 | 247 | 5 | 188 | 1.74e-91 | 267 |
| Msa0204350 | MtrunA17_Chr2g0302501 | 74.545 | 110 | 10 | 2 | 1 | 93 | 19 | 127 | 4.83e-50 | 160 |
| Msa0204350 | MtrunA17_Chr4g0065261 | 61.798 | 89 | 33 | 1 | 159 | 247 | 88 | 175 | 3.93e-28 | 105 |
| Msa0204350 | MtrunA17_Chr8g0373571 | 47.500 | 80 | 42 | 0 | 162 | 241 | 260 | 339 | 4.96e-18 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204350 | AT4G36730.2 | 41.250 | 80 | 47 | 0 | 162 | 241 | 220 | 299 | 1.06e-14 | 72.8 |
| Msa0204350 | AT4G36730.1 | 41.250 | 80 | 47 | 0 | 162 | 241 | 222 | 301 | 1.18e-14 | 72.4 |
| Msa0204350 | AT2G35530.1 | 41.176 | 68 | 40 | 0 | 162 | 229 | 305 | 372 | 1.90e-11 | 63.5 |
Find 44 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTAGACTGGCACAGAATT+TGG | 0.190875 | 2_1:-29359826 | Msa0204350:CDS |
| GATTTCCACTTCGTGCTTAA+AGG | 0.210924 | 2_1:+29360024 | None:intergenic |
| GCAAATAATTTGTTGAAATC+AGG | 0.241071 | 2_1:+29360402 | None:intergenic |
| TGGCAGACCTTACAATTTCT+TGG | 0.294838 | 2_1:-29360749 | Msa0204350:CDS |
| TGGAAATCTAACATGATTAC+TGG | 0.326793 | 2_1:-29360009 | Msa0204350:CDS |
| GATTTCAACAAATTATTTGC+TGG | 0.331658 | 2_1:-29360399 | Msa0204350:CDS |
| ACTGGCGAATCAAGAGAATA+TGG | 0.350738 | 2_1:-29360348 | Msa0204350:CDS |
| AAATTCTGTGCCAGTCTAGA+TGG | 0.385888 | 2_1:+29359828 | None:intergenic |
| TGGAACAGGAAGAGCTAGTT+AGG | 0.411729 | 2_1:-29357930 | Msa0204350:intron |
| AAGATCAAAGTTAAAGAAAC+AGG | 0.415399 | 2_1:-29358652 | Msa0204350:intron |
| AATAGATCTGCAATTGATTC+TGG | 0.415707 | 2_1:+29357898 | None:intergenic |
| TCACGTTTCTTGAGCATGAC+GGG | 0.420537 | 2_1:-29360793 | None:intergenic |
| AAGAAAGAATCCATTCCATT+TGG | 0.432084 | 2_1:-29360769 | Msa0204350:CDS |
| TGTGGTAGTATAGGTGTGTT+TGG | 0.437228 | 2_1:+29360609 | None:intergenic |
| CCAGTCATTAAACTTACATC+AGG | 0.439376 | 2_1:+29360366 | None:intergenic |
| CACTCTTAAGGAAGACAATT+CGG | 0.440018 | 2_1:-29358386 | Msa0204350:CDS |
| CAAATAATTTGTTGAAATCA+GGG | 0.443190 | 2_1:+29360403 | None:intergenic |
| TGCACAGGCTTTCTCAGAAA+TGG | 0.443916 | 2_1:-29360439 | Msa0204350:CDS |
| CACACCTATACTACCACATT+GGG | 0.444425 | 2_1:-29360604 | Msa0204350:CDS |
| AAGACTGTCAAACAGGAAAT+CGG | 0.451393 | 2_1:-29358679 | Msa0204350:CDS |
| TCAAAAGATAGACACTCTTA+AGG | 0.455063 | 2_1:-29358398 | Msa0204350:CDS |
| GAAGAGCTAGTTAGGTTGTA+TGG | 0.478454 | 2_1:-29357922 | Msa0204350:CDS |
| GTATCCCAATGTGGTAGTAT+AGG | 0.486053 | 2_1:+29360600 | None:intergenic |
| TGAGGCACCAAGAAATTGTA+AGG | 0.489679 | 2_1:+29360742 | None:intergenic |
| AAATTGTAAGGTCTGCCAAA+TGG | 0.515741 | 2_1:+29360754 | None:intergenic |
| GGAAATCTAACATGATTACT+GGG | 0.531328 | 2_1:-29360008 | Msa0204350:CDS |
| CGATGAAAATGATTCTATTG+AGG | 0.536409 | 2_1:-29358314 | Msa0204350:intron |
| GTAAGGTCTGCCAAATGGAA+TGG | 0.548289 | 2_1:+29360759 | None:intergenic |
| GGAAGCAAGAGATCGACAGA+TGG | 0.554192 | 2_1:-29360187 | Msa0204350:CDS |
| TCTAACATGATTACTGGGGA+TGG | 0.558549 | 2_1:-29360003 | Msa0204350:intron |
| ACACACCTATACTACCACAT+TGG | 0.558988 | 2_1:-29360605 | Msa0204350:CDS |
| TGTAGAAAATCCATCTAGAC+TGG | 0.559052 | 2_1:-29359838 | Msa0204350:intron |
| CCACCACAAAAGTTTCAAGT+AGG | 0.565064 | 2_1:+29357865 | None:intergenic |
| CCTGATGTAAGTTTAATGAC+TGG | 0.574077 | 2_1:-29360366 | Msa0204350:CDS |
| TATGTGCACAGTGCAATAAG+TGG | 0.577404 | 2_1:-29360208 | Msa0204350:intron |
| GAATTTGGAGACAGTTGTCA+AGG | 0.581971 | 2_1:-29359811 | Msa0204350:CDS |
| ACATTGGGATACAACTATGC+AGG | 0.582030 | 2_1:-29360589 | Msa0204350:intron |
| CATGATTTACCGACATCTTG+AGG | 0.589885 | 2_1:+29360724 | None:intergenic |
| ATTCTCCTTTAAGCACGAAG+TGG | 0.623187 | 2_1:-29360029 | Msa0204350:CDS |
| CACGTTTCTTGAGCATGACG+GGG | 0.626860 | 2_1:-29360792 | None:intergenic |
| GAACAATCTGTACCTCATTG+AGG | 0.632062 | 2_1:+29360287 | None:intergenic |
| TGCATAGTTGTATCCCAATG+TGG | 0.691783 | 2_1:+29360591 | None:intergenic |
| ATAGGGAAGGGACCTCAATG+AGG | 0.698466 | 2_1:-29360299 | Msa0204350:intron |
| GAAATCTAACATGATTACTG+GGG | 0.706448 | 2_1:-29360007 | Msa0204350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAATGTTTATACATTT+TGG | - | chr2_1:29358186-29358205 | Msa0204350:intron | 10.0% |
| !!! | TTAGTTTTTTTTATTCGTAA+AGG | + | chr2_1:29358155-29358174 | None:intergenic | 15.0% |
| !!! | GATTAGTTTTTATATAAATG+TGG | - | chr2_1:29358526-29358545 | Msa0204350:intron | 15.0% |
| !! | TTCCTTTCTTAAATTATTAT+CGG | + | chr2_1:29359217-29359236 | None:intergenic | 15.0% |
| !!! | GTATTATTTTCTTACATTTT+TGG | + | chr2_1:29359457-29359476 | None:intergenic | 15.0% |
| !! | TAAAATTCAACAAATAAGAA+GGG | + | chr2_1:29360385-29360404 | None:intergenic | 15.0% |
| !! | ATAAAATTCAACAAATAAGA+AGG | + | chr2_1:29360386-29360405 | None:intergenic | 15.0% |
| !! | ACAAATATTAGAAAATAAGA+TGG | + | chr2_1:29360474-29360493 | None:intergenic | 15.0% |
| !! | TTAAATAAACTAAGAAACAA+TGG | - | chr2_1:29360505-29360524 | Msa0204350:intron | 15.0% |
| !!! | CAAATAATTTGTTGAAATCA+GGG | + | chr2_1:29358257-29358276 | None:intergenic | 20.0% |
| !!! | CAACTGTCATATAAAATTTT+CGG | - | chr2_1:29358571-29358590 | Msa0204350:intron | 20.0% |
| !!! | AAGGATTTAATTAGACTTTT+TGG | + | chr2_1:29358597-29358616 | None:intergenic | 20.0% |
| !! | GAATCGAAAAAAAACTATTT+GGG | + | chr2_1:29360100-29360119 | None:intergenic | 20.0% |
| !! | AGAATCGAAAAAAAACTATT+TGG | + | chr2_1:29360101-29360120 | None:intergenic | 20.0% |
| !! | AAAATTCAACAAATAAGAAG+GGG | + | chr2_1:29360384-29360403 | None:intergenic | 20.0% |
| !! | ATTTGTGTTCAATTAGAAAA+AGG | - | chr2_1:29360448-29360467 | Msa0204350:intron | 20.0% |
| !! | AGAAATCAAAATAGTATTCA+GGG | - | chr2_1:29360535-29360554 | Msa0204350:intron | 20.0% |
| !!! | AATGTTTATACATTTTGGTC+AGG | - | chr2_1:29358191-29358210 | Msa0204350:intron | 25.0% |
| !!! | GCAAATAATTTGTTGAAATC+AGG | + | chr2_1:29358258-29358277 | None:intergenic | 25.0% |
| ! | GATTTCAACAAATTATTTGC+TGG | - | chr2_1:29358258-29358277 | Msa0204350:intron | 25.0% |
| ! | TTCTTCACCAAAAAATGATA+GGG | - | chr2_1:29358341-29358360 | Msa0204350:CDS | 25.0% |
| !!! | AAGTTTTTTGTTCAGTCTTT+GGG | + | chr2_1:29358429-29358448 | None:intergenic | 25.0% |
| !!! | AAAGTTTTTTGTTCAGTCTT+TGG | + | chr2_1:29358430-29358449 | None:intergenic | 25.0% |
| ! | GTCTAATTAAATCCTTTATG+TGG | - | chr2_1:29358601-29358620 | Msa0204350:intron | 25.0% |
| ! | TGATGCTCAACTAAAAAATA+TGG | - | chr2_1:29358891-29358910 | Msa0204350:intron | 25.0% |
| ! | ACATCATAATGATTCAAAAG+GGG | + | chr2_1:29359049-29359068 | None:intergenic | 25.0% |
| ! | GACATCATAATGATTCAAAA+GGG | + | chr2_1:29359050-29359069 | None:intergenic | 25.0% |
| ! | CACCGATAATAATTTAAGAA+AGG | - | chr2_1:29359212-29359231 | Msa0204350:intron | 25.0% |
| ! | AAGGAAAATGCTAAATGTTA+CGG | - | chr2_1:29359231-29359250 | Msa0204350:intron | 25.0% |
| ! | GGATTTGAGAAATAAGATTA+TGG | + | chr2_1:29359345-29359364 | None:intergenic | 25.0% |
| ! | GTAACATAGATTTAGAGAAA+TGG | - | chr2_1:29359524-29359543 | Msa0204350:intron | 25.0% |
| ! | AATTTATATGCATAGTGTGT+TGG | + | chr2_1:29359615-29359634 | None:intergenic | 25.0% |
| ! | GAATATGATTATAACTATGG+TGG | + | chr2_1:29359691-29359710 | None:intergenic | 25.0% |
| ! | CAGGAATATGATTATAACTA+TGG | + | chr2_1:29359694-29359713 | None:intergenic | 25.0% |
| ! | TACATATTTAGCTACAAAGT+TGG | + | chr2_1:29359860-29359879 | None:intergenic | 25.0% |
| ! | ACTTTGTAGCTAAATATGTA+TGG | - | chr2_1:29359860-29359879 | Msa0204350:intron | 25.0% |
| ! | AAACTTAGCAACATTAAGAA+CGG | + | chr2_1:29359909-29359928 | None:intergenic | 25.0% |
| ! | AAGATCAAAGTTAAAGAAAC+AGG | - | chr2_1:29360005-29360024 | Msa0204350:CDS | 25.0% |
| ! | ACGTAAAAAGAAAAAGATGT+TGG | - | chr2_1:29360063-29360082 | Msa0204350:intron | 25.0% |
| !! | CTCAATAGAATCATTTTCAT+CGG | + | chr2_1:29360345-29360364 | None:intergenic | 25.0% |
| ! | GAGAAATCAAAATAGTATTC+AGG | - | chr2_1:29360534-29360553 | Msa0204350:intron | 25.0% |
| !! | AGTAGCAATAATGGAAAATA+GGG | + | chr2_1:29360686-29360705 | None:intergenic | 25.0% |
| !! | TAGTAGCAATAATGGAAAAT+AGG | + | chr2_1:29360687-29360706 | None:intergenic | 25.0% |
| ! | ACTCAAATTAGTAGCAATAA+TGG | + | chr2_1:29360695-29360714 | None:intergenic | 25.0% |
| AAGAAAGAATCCATTCCATT+TGG | - | chr2_1:29357888-29357907 | Msa0204350:CDS | 30.0% | |
| CTTCTTCACCAAAAAATGAT+AGG | - | chr2_1:29358340-29358359 | Msa0204350:CDS | 30.0% | |
| AATTAAATCCTTTATGTGGC+AGG | - | chr2_1:29358605-29358624 | Msa0204350:intron | 30.0% | |
| TGGAAATCTAACATGATTAC+TGG | - | chr2_1:29358648-29358667 | Msa0204350:intron | 30.0% | |
| GGAAATCTAACATGATTACT+GGG | - | chr2_1:29358649-29358668 | Msa0204350:intron | 30.0% | |
| GAAATCTAACATGATTACTG+GGG | - | chr2_1:29358650-29358669 | Msa0204350:intron | 30.0% | |
| TTAAATGCAGTTCATGTGTT+TGG | + | chr2_1:29358769-29358788 | None:intergenic | 30.0% | |
| GGACATCATAATGATTCAAA+AGG | + | chr2_1:29359051-29359070 | None:intergenic | 30.0% | |
| GATGTCCACATACTTAAAAA+AGG | - | chr2_1:29359064-29359083 | Msa0204350:intron | 30.0% | |
| !!! | AGTGACCTTTTTTAAGTATG+TGG | + | chr2_1:29359072-29359091 | None:intergenic | 30.0% |
| AAAAGTCATGTTCTAACACA+TGG | + | chr2_1:29359164-29359183 | None:intergenic | 30.0% | |
| AGAAGAATCCACAAAAATAG+GGG | + | chr2_1:29359366-29359385 | None:intergenic | 30.0% | |
| GAGAAGAATCCACAAAAATA+GGG | + | chr2_1:29359367-29359386 | None:intergenic | 30.0% | |
| AGAGAAGAATCCACAAAAAT+AGG | + | chr2_1:29359368-29359387 | None:intergenic | 30.0% | |
| ATTGACACTTCAGATTAAAC+AGG | + | chr2_1:29359499-29359518 | None:intergenic | 30.0% | |
| ACATAGATTTAGAGAAATGG+AGG | - | chr2_1:29359527-29359546 | Msa0204350:intron | 30.0% | |
| GGATAATAGCATAATAGCTT+AGG | + | chr2_1:29359567-29359586 | None:intergenic | 30.0% | |
| ACATGTTGAAAAACTAACAC+AGG | + | chr2_1:29359713-29359732 | None:intergenic | 30.0% | |
| ATGGTAACATTTCACATGAA+AGG | + | chr2_1:29359826-29359845 | None:intergenic | 30.0% | |
| AAAGTTGGATCGATAAATGA+TGG | + | chr2_1:29359845-29359864 | None:intergenic | 30.0% | |
| AAAGAAAAAGACTGTCAAAC+AGG | - | chr2_1:29359971-29359990 | Msa0204350:intron | 30.0% | |
| ATTGCTCTTCATATTCTTTC+TGG | + | chr2_1:29360238-29360257 | None:intergenic | 30.0% | |
| TCAAAAGATAGACACTCTTA+AGG | - | chr2_1:29360259-29360278 | Msa0204350:intron | 30.0% | |
| CGATGAAAATGATTCTATTG+AGG | - | chr2_1:29360343-29360362 | Msa0204350:CDS | 30.0% | |
| CTACTAATTTGAGTGTGATT+TGG | - | chr2_1:29360701-29360720 | Msa0204350:intron | 30.0% | |
| ! | AATAGATCTGCAATTGATTC+TGG | + | chr2_1:29360762-29360781 | None:intergenic | 30.0% |
| AAATTGTAAGGTCTGCCAAA+TGG | + | chr2_1:29357906-29357925 | None:intergenic | 35.0% | |
| CAAAGATAACCGTCACAAAT+TGG | + | chr2_1:29358117-29358136 | None:intergenic | 35.0% | |
| CAATTTGTGACGGTTATCTT+TGG | - | chr2_1:29358115-29358134 | Msa0204350:intron | 35.0% | |
| CCAGTCATTAAACTTACATC+AGG | + | chr2_1:29358294-29358313 | None:intergenic | 35.0% | |
| CCTGATGTAAGTTTAATGAC+TGG | - | chr2_1:29358291-29358310 | Msa0204350:intron | 35.0% | |
| !!! | CATTTTTTGGTGAAGAAGAC+TGG | + | chr2_1:29358338-29358357 | None:intergenic | 35.0% |
| TCACCAAAAAATGATAGGGA+AGG | - | chr2_1:29358345-29358364 | Msa0204350:CDS | 35.0% | |
| CACCAAAAAATGATAGGGAA+GGG | - | chr2_1:29358346-29358365 | Msa0204350:CDS | 35.0% | |
| ACAGATTGTTCTTGTTCTTC+TGG | - | chr2_1:29358382-29358401 | Msa0204350:CDS | 35.0% | |
| ! | TTTGTTCAGTCTTTGGGAAA+AGG | + | chr2_1:29358423-29358442 | None:intergenic | 35.0% |
| TACTGGGGATGGTAATATTA+TGG | - | chr2_1:29358665-29358684 | Msa0204350:CDS | 35.0% | |
| CACATGAACTGCATTTAATG+TGG | - | chr2_1:29358771-29358790 | Msa0204350:intron | 35.0% | |
| TGTAGAAAATCCATCTAGAC+TGG | - | chr2_1:29358819-29358838 | Msa0204350:intron | 35.0% | |
| ATTATGGCTAACCATACATG+GGG | + | chr2_1:29359329-29359348 | None:intergenic | 35.0% | |
| GATTATGGCTAACCATACAT+GGG | + | chr2_1:29359330-29359349 | None:intergenic | 35.0% | |
| AGATTATGGCTAACCATACA+TGG | + | chr2_1:29359331-29359350 | None:intergenic | 35.0% | |
| !!! | TCTCAAATCCCCTATTTTTG+TGG | - | chr2_1:29359355-29359374 | Msa0204350:intron | 35.0% |
| TAGATTTAGAGAAATGGAGG+TGG | - | chr2_1:29359530-29359549 | Msa0204350:intron | 35.0% | |
| TTATATGCATAGTGTGTTGG+TGG | + | chr2_1:29359612-29359631 | None:intergenic | 35.0% | |
| ATGAAAGGCTCATATAAGAC+AGG | + | chr2_1:29359811-29359830 | None:intergenic | 35.0% | |
| CTTATTTCATCAACTTCCTG+TGG | + | chr2_1:29359946-29359965 | None:intergenic | 35.0% | |
| AAGACTGTCAAACAGGAAAT+CGG | - | chr2_1:29359978-29359997 | Msa0204350:intron | 35.0% | |
| CAAACAAACACATCAGAAGT+TGG | + | chr2_1:29360163-29360182 | None:intergenic | 35.0% | |
| CACTCTTAAGGAAGACAATT+CGG | - | chr2_1:29360271-29360290 | Msa0204350:intron | 35.0% | |
| ! | CTAATTTGAGTGTGATTTGG+TGG | - | chr2_1:29360704-29360723 | Msa0204350:intron | 35.0% |
| TGGCAGACCTTACAATTTCT+TGG | - | chr2_1:29357908-29357927 | Msa0204350:CDS | 40.0% | |
| ! | TGAGGCACCAAGAAATTGTA+AGG | + | chr2_1:29357918-29357937 | None:intergenic | 40.0% |
| CATGATTTACCGACATCTTG+AGG | + | chr2_1:29357936-29357955 | None:intergenic | 40.0% | |
| TGTGGTAGTATAGGTGTGTT+TGG | + | chr2_1:29358051-29358070 | None:intergenic | 40.0% | |
| ACACACCTATACTACCACAT+TGG | - | chr2_1:29358052-29358071 | Msa0204350:intron | 40.0% | |
| CACACCTATACTACCACATT+GGG | - | chr2_1:29358053-29358072 | Msa0204350:intron | 40.0% | |
| GTATCCCAATGTGGTAGTAT+AGG | + | chr2_1:29358060-29358079 | None:intergenic | 40.0% | |
| TGCATAGTTGTATCCCAATG+TGG | + | chr2_1:29358069-29358088 | None:intergenic | 40.0% | |
| ACATTGGGATACAACTATGC+AGG | - | chr2_1:29358068-29358087 | Msa0204350:intron | 40.0% | |
| ACTGGCGAATCAAGAGAATA+TGG | - | chr2_1:29358309-29358328 | Msa0204350:intron | 40.0% | |
| !!! | GTCCCTTCCCTATCATTTTT+TGG | + | chr2_1:29358351-29358370 | None:intergenic | 40.0% |
| GAACAATCTGTACCTCATTG+AGG | + | chr2_1:29358373-29358392 | None:intergenic | 40.0% | |
| TATGTGCACAGTGCAATAAG+TGG | - | chr2_1:29358449-29358468 | Msa0204350:intron | 40.0% | |
| ATTCTCCTTTAAGCACGAAG+TGG | - | chr2_1:29358628-29358647 | Msa0204350:intron | 40.0% | |
| GATTTCCACTTCGTGCTTAA+AGG | + | chr2_1:29358636-29358655 | None:intergenic | 40.0% | |
| TCTAACATGATTACTGGGGA+TGG | - | chr2_1:29358654-29358673 | Msa0204350:CDS | 40.0% | |
| AAATTCTGTGCCAGTCTAGA+TGG | + | chr2_1:29358832-29358851 | None:intergenic | 40.0% | |
| ATCTAGACTGGCACAGAATT+TGG | - | chr2_1:29358831-29358850 | Msa0204350:intron | 40.0% | |
| GAATTTGGAGACAGTTGTCA+AGG | - | chr2_1:29358846-29358865 | Msa0204350:intron | 40.0% | |
| TCTGTAGTCATTGTGAGACT+TGG | - | chr2_1:29359115-29359134 | Msa0204350:intron | 40.0% | |
| ACATGGTAGTCTGGACTTAA+TGG | + | chr2_1:29359147-29359166 | None:intergenic | 40.0% | |
| TGTTCTAACACATGGTAGTC+TGG | + | chr2_1:29359156-29359175 | None:intergenic | 40.0% | |
| ! | ACATCTCATGTGGGTAGTTT+TGG | + | chr2_1:29359588-29359607 | None:intergenic | 40.0% |
| TGAGTCTTGCAAGATATGCT+TGG | - | chr2_1:29359656-29359675 | Msa0204350:intron | 40.0% | |
| !! | CAAGATATGCTTGGCTTTGT+TGG | - | chr2_1:29359665-29359684 | Msa0204350:intron | 40.0% |
| TTAGTTGCATTTCTTGCCAC+AGG | - | chr2_1:29359927-29359946 | Msa0204350:intron | 40.0% | |
| AGGTACATACGACAATGCTT+TGG | - | chr2_1:29360025-29360044 | Msa0204350:CDS | 40.0% | |
| TGGCTACAAAGAGAGATCAA+AGG | + | chr2_1:29360569-29360588 | None:intergenic | 40.0% | |
| GTCATCTAACACGAAGAAAG+TGG | + | chr2_1:29360589-29360608 | None:intergenic | 40.0% | |
| !! | ATTTGAGTGTGATTTGGTGG+TGG | - | chr2_1:29360707-29360726 | Msa0204350:intron | 40.0% |
| ! | GAAGAGCTAGTTAGGTTGTA+TGG | - | chr2_1:29360735-29360754 | Msa0204350:intron | 40.0% |
| GTAAGGTCTGCCAAATGGAA+TGG | + | chr2_1:29357901-29357920 | None:intergenic | 45.0% | |
| !! | TTCTTGGTGCCTCAAGATGT+CGG | - | chr2_1:29357924-29357943 | Msa0204350:CDS | 45.0% |
| TGCTCTGCACCAATTTGTGA+CGG | - | chr2_1:29358105-29358124 | Msa0204350:intron | 45.0% | |
| TGCACAGGCTTTCTCAGAAA+TGG | - | chr2_1:29358218-29358237 | Msa0204350:intron | 45.0% | |
| AGGAGAATCCTGCCACATAA+AGG | + | chr2_1:29358616-29358635 | None:intergenic | 45.0% | |
| TGGCTAACAGTCTTGCATCT+TGG | - | chr2_1:29358791-29358810 | Msa0204350:intron | 45.0% | |
| AGAAACGCAAGAATCATGCG+TGG | - | chr2_1:29359267-29359286 | Msa0204350:intron | 45.0% | |
| TGGAACAGGAAGAGCTAGTT+AGG | - | chr2_1:29360727-29360746 | Msa0204350:intron | 45.0% | |
| !!! | TTATTTTTTTTTTTTTTTTG+TGG | - | chr2_1:29358972-29358991 | Msa0204350:intron | 5.0% |
| ! | TTTTGGTCAGGATGCTGCAC+AGG | - | chr2_1:29358203-29358222 | Msa0204350:intron | 50.0% |
| ATAGGGAAGGGACCTCAATG+AGG | - | chr2_1:29358358-29358377 | Msa0204350:CDS | 50.0% | |
| GGAAGCAAGAGATCGACAGA+TGG | - | chr2_1:29358470-29358489 | Msa0204350:intron | 50.0% | |
| CTAACCATACATGGGGTAGG+GGG | + | chr2_1:29359322-29359341 | None:intergenic | 50.0% | |
| GCTAACCATACATGGGGTAG+GGG | + | chr2_1:29359323-29359342 | None:intergenic | 50.0% | |
| GGCTAACCATACATGGGGTA+GGG | + | chr2_1:29359324-29359343 | None:intergenic | 50.0% | |
| TGGCTAACCATACATGGGGT+AGG | + | chr2_1:29359325-29359344 | None:intergenic | 50.0% | |
| !! | GTTGGTGGCACATCTCATGT+GGG | + | chr2_1:29359597-29359616 | None:intergenic | 50.0% |
| !! | TGTTGGTGGCACATCTCATG+TGG | + | chr2_1:29359598-29359617 | None:intergenic | 50.0% |
| !! | GTGTGATTTGGTGGTGGAAC+AGG | - | chr2_1:29360713-29360732 | Msa0204350:intron | 50.0% |
| ACTGCCCCCTACCCCATGTA+TGG | - | chr2_1:29359315-29359334 | Msa0204350:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 29357879 | 29360800 | 29357879 | ID=Msa0204350;Name=Msa0204350 |
| chr2_1 | mRNA | 29357879 | 29360800 | 29357879 | ID=Msa0204350-mRNA-1;Parent=Msa0204350;Name=Msa0204350-mRNA-1;_AED=0.18;_eAED=0.19;_QI=0|0|0|1|1|1|9|0|247 |
| chr2_1 | exon | 29360738 | 29360800 | 29360738 | ID=Msa0204350-mRNA-1:exon:10548;Parent=Msa0204350-mRNA-1 |
| chr2_1 | exon | 29360590 | 29360640 | 29360590 | ID=Msa0204350-mRNA-1:exon:10547;Parent=Msa0204350-mRNA-1 |
| chr2_1 | exon | 29360300 | 29360466 | 29360300 | ID=Msa0204350-mRNA-1:exon:10546;Parent=Msa0204350-mRNA-1 |
| chr2_1 | exon | 29360165 | 29360219 | 29360165 | ID=Msa0204350-mRNA-1:exon:10545;Parent=Msa0204350-mRNA-1 |
| chr2_1 | exon | 29360004 | 29360052 | 29360004 | ID=Msa0204350-mRNA-1:exon:10544;Parent=Msa0204350-mRNA-1 |
| chr2_1 | exon | 29359767 | 29359855 | 29359767 | ID=Msa0204350-mRNA-1:exon:10543;Parent=Msa0204350-mRNA-1 |
| chr2_1 | exon | 29358653 | 29358730 | 29358653 | ID=Msa0204350-mRNA-1:exon:10542;Parent=Msa0204350-mRNA-1 |
| chr2_1 | exon | 29358315 | 29358440 | 29358315 | ID=Msa0204350-mRNA-1:exon:10541;Parent=Msa0204350-mRNA-1 |
| chr2_1 | exon | 29357879 | 29357944 | 29357879 | ID=Msa0204350-mRNA-1:exon:10540;Parent=Msa0204350-mRNA-1 |
| chr2_1 | CDS | 29360738 | 29360800 | 29360738 | ID=Msa0204350-mRNA-1:cds;Parent=Msa0204350-mRNA-1 |
| chr2_1 | CDS | 29360590 | 29360640 | 29360590 | ID=Msa0204350-mRNA-1:cds;Parent=Msa0204350-mRNA-1 |
| chr2_1 | CDS | 29360300 | 29360466 | 29360300 | ID=Msa0204350-mRNA-1:cds;Parent=Msa0204350-mRNA-1 |
| chr2_1 | CDS | 29360165 | 29360219 | 29360165 | ID=Msa0204350-mRNA-1:cds;Parent=Msa0204350-mRNA-1 |
| chr2_1 | CDS | 29360004 | 29360052 | 29360004 | ID=Msa0204350-mRNA-1:cds;Parent=Msa0204350-mRNA-1 |
| chr2_1 | CDS | 29359767 | 29359855 | 29359767 | ID=Msa0204350-mRNA-1:cds;Parent=Msa0204350-mRNA-1 |
| chr2_1 | CDS | 29358653 | 29358730 | 29358653 | ID=Msa0204350-mRNA-1:cds;Parent=Msa0204350-mRNA-1 |
| chr2_1 | CDS | 29358315 | 29358440 | 29358315 | ID=Msa0204350-mRNA-1:cds;Parent=Msa0204350-mRNA-1 |
| chr2_1 | CDS | 29357879 | 29357944 | 29357879 | ID=Msa0204350-mRNA-1:cds;Parent=Msa0204350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
