AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0204420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0204420 MtrunA17_Chr2g0303101 95.713 1003 43 0 1 1003 1 1003 0.0 1900
Msa0204420 MtrunA17_Chr8g0380981 60.697 1033 337 15 34 1001 25 1053 0.0 1176
Msa0204420 MtrunA17_Chr1g0189211 58.520 581 227 6 27 598 125 700 0.0 689
Msa0204420 MtrunA17_Chr1g0189211 37.603 242 139 3 762 1002 998 1228 5.60e-40 160
Msa0204420 MtrunA17_Chr7g0261401 45.391 575 290 8 34 590 99 667 4.31e-159 490
Msa0204420 MtrunA17_Chr5g0397501 40.749 427 205 8 154 568 288 678 1.15e-86 305
Msa0204420 MtrunA17_Chr5g0397501 54.054 74 30 2 47 120 23 92 4.66e-14 77.0
Msa0204420 MtrunA17_Chr5g0410721 35.714 406 176 11 49 440 86 420 3.82e-59 218
Msa0204420 MtrunA17_Chr3g0116441 33.827 405 195 10 52 445 18 360 6.24e-56 212
Msa0204420 MtrunA17_Chr1g0164731 29.187 603 322 17 48 631 41 557 2.90e-54 199
Msa0204420 MtrunA17_Chr1g0164761 31.450 407 186 11 48 445 4 326 9.42e-47 177
Msa0204420 MtrunA17_Chr1g0199511 39.574 235 138 3 264 495 295 528 7.45e-43 170
Msa0204420 MtrunA17_Chr7g0214951 40.870 115 43 4 294 400 104 201 7.49e-16 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0204420 AT1G30810.3 64.202 595 196 6 4 589 6 592 0.0 743
Msa0204420 AT1G30810.3 53.631 179 73 4 766 942 648 818 6.14e-51 194
Msa0204420 AT1G30810.2 64.202 595 196 6 4 589 6 592 0.0 743
Msa0204420 AT1G30810.2 53.631 179 73 4 766 942 648 818 6.14e-51 194
Msa0204420 AT1G30810.1 64.202 595 196 6 4 589 6 592 0.0 743
Msa0204420 AT1G30810.1 53.631 179 73 4 766 942 648 818 6.14e-51 194
Msa0204420 AT4G20400.1 61.646 571 200 5 21 585 31 588 0.0 719
Msa0204420 AT4G20400.1 40.265 226 114 3 779 1000 743 951 4.51e-43 170
Msa0204420 AT2G34880.1 58.059 577 217 8 16 585 25 583 0.0 690
Msa0204420 AT2G34880.1 47.179 195 95 3 751 943 618 806 4.04e-46 179
Msa0204420 AT4G20400.2 61.842 532 190 4 60 585 7 531 0.0 668
Msa0204420 AT4G20400.2 40.359 223 112 3 782 1000 689 894 4.82e-43 170
Msa0204420 AT1G08620.3 56.724 580 242 3 33 605 141 718 0.0 652
Msa0204420 AT1G08620.3 38.222 225 123 2 762 979 988 1203 2.94e-40 162
Msa0204420 AT1G08620.2 56.724 580 242 3 33 605 127 704 0.0 652
Msa0204420 AT1G08620.2 38.222 225 123 2 762 979 974 1189 3.13e-40 162
Msa0204420 AT1G08620.4 56.724 580 242 3 33 605 127 704 0.0 652
Msa0204420 AT1G08620.4 38.222 225 123 2 762 979 974 1189 3.13e-40 162
Msa0204420 AT1G08620.1 56.724 580 242 3 33 605 127 704 0.0 652
Msa0204420 AT1G08620.1 38.222 225 123 2 762 979 974 1189 3.13e-40 162
Msa0204420 AT2G38950.1 40.258 621 317 11 26 628 80 664 6.81e-138 431
Msa0204420 AT1G63490.1 40.566 424 207 7 160 573 38 426 1.59e-90 315
Msa0204420 AT1G63490.2 40.566 424 207 7 160 573 291 679 1.42e-89 314
Msa0204420 AT1G63490.2 52.174 69 29 2 52 120 31 95 8.87e-12 70.1
Msa0204420 AT1G63490.4 40.566 424 207 7 160 573 291 679 1.47e-89 314
Msa0204420 AT1G63490.4 52.174 69 29 2 52 120 31 95 8.80e-12 70.1
Msa0204420 AT5G46910.2 33.333 510 240 17 49 542 100 525 2.97e-62 224
Msa0204420 AT5G46910.1 33.855 511 236 19 49 542 100 525 1.84e-61 224
Msa0204420 AT3G48430.1 31.648 455 263 11 52 495 20 437 8.34e-46 180
Msa0204420 AT5G04240.1 38.723 235 140 3 264 495 263 496 5.90e-41 164
Msa0204420 AT1G63490.3 36.555 238 128 4 341 573 1 220 2.08e-37 152

Find 220 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGGATCAGTATGCACTTTC+TGG 0.098787 2_1:-29563546 Msa0204420:CDS
GCAATATGCTAGCTACTTTA+AGG 0.106466 2_1:-29563878 Msa0204420:CDS
AGTTCTTACTAAGGCATTTA+AGG 0.159985 2_1:-29562389 Msa0204420:intron
AATTTAACTGAAGAAATTTC+TGG 0.191312 2_1:-29559977 Msa0204420:three_prime_UTR
CGGAGGGCTCCCTTCGGTTT+TGG 0.197047 2_1:+29563797 None:intergenic
GACTTGGAAACTGGAGTATT+TGG 0.209261 2_1:-29563609 Msa0204420:CDS
TTCTTAAGGAGAAAGATATT+TGG 0.254609 2_1:-29564125 Msa0204420:CDS
GTGAAGCCTAGATGAAATTT+TGG 0.255816 2_1:-29559954 Msa0204420:three_prime_UTR
TTCTGTCAAGCCTATAAGTT+TGG 0.258215 2_1:-29561383 Msa0204420:CDS
TGCAAAATGCATCTGTAATT+AGG 0.270016 2_1:+29559908 None:intergenic
ACAACAGATCCCAAACTTAT+AGG 0.275338 2_1:+29561373 None:intergenic
CCCTCATCTTTAAGAATTGA+TGG 0.280365 2_1:+29562721 None:intergenic
GTAATTGATGCTGGACTTCT+AGG 0.284250 2_1:-29561140 Msa0204420:CDS
GTTTGAAAATCTAACCTCTT+TGG 0.284374 2_1:+29565267 None:intergenic
CCCTTTACCGTCCATTGTTC+AGG 0.287730 2_1:-29560670 Msa0204420:intron
TTCACTTGCTCTTGAGTTAT+GGG 0.291488 2_1:-29561962 Msa0204420:CDS
ACCAGATCATTGAGTAGATT+TGG 0.300651 2_1:+29562883 None:intergenic
TGAAAGTCTTAGAAGTAAAA+AGG 0.310711 2_1:-29564664 Msa0204420:intron
TACTTTCATTCGGCGCGCTA+AGG 0.318250 2_1:+29561770 None:intergenic
TGTAAAGTTCAACGGCATTT+AGG 0.320348 2_1:+29562560 None:intergenic
TTGAATGAAACAAATGGAAT+TGG 0.322118 2_1:-29565293 Msa0204420:exon
GGTTCCACCTTGCCTTCTTA+AGG 0.324646 2_1:-29564139 Msa0204420:CDS
ATTAGCTTCAGAAGCTGATT+TGG 0.335951 2_1:+29563969 None:intergenic
AGGAAATTGAAGGCGAATAC+TGG 0.340194 2_1:-29563771 Msa0204420:CDS
TCTTAAGGAGAAAGATATTT+GGG 0.341769 2_1:-29564124 Msa0204420:CDS
GTGCTGAACAGTGCGATATA+CGG 0.343791 2_1:+29562693 None:intergenic
ATTCAGAAAGCTTTGTAGAT+AGG 0.345386 2_1:-29560082 Msa0204420:exon
TACTTTAAGGAATGCTACTT+TGG 0.345768 2_1:-29563865 Msa0204420:CDS
GATTGTCCCTCCAGCTTGTT+GGG 0.347186 2_1:-29564160 Msa0204420:CDS
TCTTCAGCACAAGCCTAAAA+AGG 0.347485 2_1:-29564706 Msa0204420:CDS
CAGTTATCGATGACACTTCC+TGG 0.347721 2_1:+29560325 None:intergenic
CTGAATACGGGTGGAAAATT+CGG 0.351486 2_1:+29564095 None:intergenic
TCTCCTACATGTTCCTGATT+TGG 0.353753 2_1:+29563996 None:intergenic
TTAAGACAAGAATATTTATC+AGG 0.357562 2_1:+29562087 None:intergenic
TGGTATTAATTTGACTGATC+AGG 0.358063 2_1:-29560263 Msa0204420:CDS
CTTGCAGAGCTAACTCTTCA+TGG 0.358880 2_1:-29562463 Msa0204420:CDS
GGATTGTCCCTCCAGCTTGT+TGG 0.359013 2_1:-29564161 Msa0204420:CDS
CACAATTCTTGTACATTTGA+TGG 0.361785 2_1:-29561544 Msa0204420:CDS
ATTCACTTGCTCTTGAGTTA+TGG 0.365297 2_1:-29561963 Msa0204420:CDS
GGTACTTCCTCGAACAAATC+AGG 0.367457 2_1:+29562904 None:intergenic
ACCACTCTGGGTTCAATTGT+GGG 0.368663 2_1:-29562636 Msa0204420:CDS
CTTATATTGTAGGTGTACTA+TGG 0.374880 2_1:-29563636 Msa0204420:intron
GAATTTGCCTTTCAAGGTTA+AGG 0.376693 2_1:-29559860 Msa0204420:three_prime_UTR
ACAGGTGCTTCATCAATTAT+AGG 0.379898 2_1:+29564372 None:intergenic
GAGCTTCTGAAAAGCATTAA+CGG 0.382203 2_1:-29560711 Msa0204420:CDS
GTAAATCAATTTGCTGAATA+CGG 0.383823 2_1:+29564082 None:intergenic
TATGGAGCGGACTTGGAAAC+TGG 0.386530 2_1:-29563618 Msa0204420:CDS
AATTTGACTGATCAGGCTAT+AGG 0.392697 2_1:-29560256 Msa0204420:CDS
TACCACTCTGGGTTCAATTG+TGG 0.397229 2_1:-29562637 Msa0204420:CDS
ATTCCAAAACAAAGTACAAA+AGG 0.408341 2_1:+29559879 None:intergenic
CTACTGAATCACCCTTGTTA+TGG 0.412634 2_1:+29561686 None:intergenic
TTTGTTCTGCTCATGCGAAA+TGG 0.417499 2_1:-29562055 Msa0204420:CDS
AAACTGGTTGTGCGGGAACC+AGG 0.420135 2_1:-29561852 Msa0204420:CDS
ATTTAACTGAAGAAATTTCT+GGG 0.423645 2_1:-29559976 Msa0204420:three_prime_UTR
CCTGAACAATGGACGGTAAA+GGG 0.427142 2_1:+29560670 None:intergenic
TATCGCACTGTTCAGCACTC+TGG 0.427845 2_1:-29562688 Msa0204420:CDS
ACATAGCTACAGATTCTTGT+TGG 0.428494 2_1:+29561170 None:intergenic
GGTGTACTATGGAGCGGACT+TGG 0.428752 2_1:-29563625 Msa0204420:CDS
TCACTATCTATACTTTCATT+CGG 0.430490 2_1:+29561760 None:intergenic
TGTTGCAGATATCAGCTAGA+TGG 0.432281 2_1:-29564416 Msa0204420:intron
ACTTTAAGGAATGCTACTTT+GGG 0.434037 2_1:-29563864 Msa0204420:CDS
TCTGTCAAGCCTATAAGTTT+GGG 0.440166 2_1:-29561382 Msa0204420:CDS
ATCGCACTGTTCAGCACTCT+GGG 0.442116 2_1:-29562687 Msa0204420:CDS
CATGCAAACCTCACTGGCCT+CGG 0.445628 2_1:+29561912 None:intergenic
CGTAGAAGGAACTCCAAATC+AGG 0.448607 2_1:-29564009 Msa0204420:CDS
TTCGCCTTCAATTTCCTCCT+CGG 0.453091 2_1:+29563777 None:intergenic
ATCCATACCTAAGGGTTATC+CGG 0.453266 2_1:-29563565 Msa0204420:CDS
TGCAATAAATGATAAAATGC+AGG 0.455377 2_1:-29559749 Msa0204420:three_prime_UTR
GATGAAATCAATACTACAAA+AGG 0.455907 2_1:-29560200 Msa0204420:CDS
AGTTTGGGATCTGTTGTTCA+TGG 0.456198 2_1:-29561367 Msa0204420:CDS
ACCAAATCTACTCAATGATC+TGG 0.458628 2_1:-29562884 Msa0204420:intron
ACTTTGGTGACTCAAAGATA+TGG 0.460598 2_1:-29562984 Msa0204420:CDS
CCTCCTCGGAGGGCTCCCTT+CGG 0.462526 2_1:+29563791 None:intergenic
GAGAAATACGGATTTCAAGC+AGG 0.463346 2_1:-29563928 Msa0204420:CDS
TTTATTCATGCAAACCTCAC+TGG 0.467027 2_1:+29561906 None:intergenic
AAATATCTTTCTCCTTAAGA+AGG 0.467623 2_1:+29564127 None:intergenic
TAAGGCATCATCCATACCTA+AGG 0.467936 2_1:-29563574 Msa0204420:CDS
GAAGGAAGCGAAAACGTAGA+AGG 0.471595 2_1:-29564023 Msa0204420:CDS
GTCATCAGTGTGCAGAGTAT+TGG 0.471615 2_1:-29560372 Msa0204420:CDS
CAAAGATATACTCGCATTCG+TGG 0.472244 2_1:+29561441 None:intergenic
ACTTGAGGTGCATCTGCAAA+TGG 0.473346 2_1:-29561515 Msa0204420:CDS
TCGCTTAATTATCTACACTT+TGG 0.473473 2_1:-29563000 Msa0204420:CDS
GTTTCTGAAGTAATTGATGC+TGG 0.475315 2_1:-29561149 Msa0204420:CDS
CCTTCAATTTCCTCCTCGGA+GGG 0.477008 2_1:+29563781 None:intergenic
CTGACAGGCAAGGATAAAGA+TGG 0.478929 2_1:-29562247 Msa0204420:intron
AAATTGCTTGAAGCACTAGA+AGG 0.484561 2_1:-29561988 Msa0204420:CDS
CAAGTACCAAAATTTCATCT+AGG 0.484948 2_1:+29559948 None:intergenic
CCTACATATGCCATAAGGTT+CGG 0.488486 2_1:+29564182 None:intergenic
TTGAAAGATGCAAATGAAGA+TGG 0.489132 2_1:-29563841 Msa0204420:CDS
ATACTCTGCACACTGATGAC+TGG 0.492600 2_1:+29560375 None:intergenic
TTTGAAGGAAGTGACATCTC+AGG 0.493396 2_1:-29563477 Msa0204420:CDS
GACAAGGGTCATGAAGAAAC+TGG 0.493740 2_1:-29561868 Msa0204420:CDS
CAGAAGTTTCATCATGCTCT+AGG 0.495798 2_1:-29561573 Msa0204420:CDS
ATGACACTTCCTGGAGATGT+AGG 0.496695 2_1:+29560334 None:intergenic
TGCTGAACAGTGCGATATAC+GGG 0.497948 2_1:+29562694 None:intergenic
ATCTCAATTCTTTCCGACGT+TGG 0.499310 2_1:-29560048 Msa0204420:three_prime_UTR
AGAAGCTACTGTGGGAAAGA+TGG 0.500316 2_1:-29562412 Msa0204420:CDS
GCTAAAGCCTTAACCTTGAA+AGG 0.502839 2_1:+29559853 None:intergenic
GAAACTGGAGTATTTGGAAG+TGG 0.503820 2_1:-29563603 Msa0204420:CDS
TAAATCAATTTGCTGAATAC+GGG 0.504028 2_1:+29564083 None:intergenic
ACCTGAACAATGGACGGTAA+AGG 0.506844 2_1:+29560669 None:intergenic
ACTTTCATTCGGCGCGCTAA+GGG 0.509835 2_1:+29561771 None:intergenic
AAAGGTTTCCCTACATCTCC+AGG 0.510314 2_1:-29560343 Msa0204420:CDS
GCACTTGCCTGATTTGTTCG+AGG 0.511183 2_1:-29562911 Msa0204420:CDS
ATGACTATTTGACTTATCCC+TGG 0.512277 2_1:+29561834 None:intergenic
GTAGATAATTAAGCGAATAG+AGG 0.512964 2_1:+29563007 None:intergenic
CTGTTGTTCATGGGAAGCTA+TGG 0.515810 2_1:-29561357 Msa0204420:CDS
TTCAGCGACTTAAAATGAGT+TGG 0.516196 2_1:+29562201 None:intergenic
ATCAGTATGCACTTTCTGGT+TGG 0.522030 2_1:-29563542 Msa0204420:CDS
ACTGGGATCTTGAGCTTCGA+TGG 0.522302 2_1:+29560393 None:intergenic
CCGAACCTTATGGCATATGT+AGG 0.522757 2_1:-29564182 Msa0204420:CDS
AAACCTCAGCAGATAAGTGT+TGG 0.523110 2_1:-29560809 Msa0204420:CDS
CCAGAAAGTGCATACTGATC+CGG 0.524034 2_1:+29563546 None:intergenic
TCTGAAGCTGATGAGAAATA+CGG 0.527516 2_1:-29563940 Msa0204420:CDS
AACCTCAGCAGATAAGTGTT+GGG 0.527827 2_1:-29560808 Msa0204420:CDS
CAACAGAAGATGAAGGTGAT+AGG 0.529116 2_1:+29561602 None:intergenic
AAGCATGCAATATATCCAAA+AGG 0.529982 2_1:-29561328 Msa0204420:intron
AATAACTTCCCGCGACTACC+AGG 0.532194 2_1:-29563513 Msa0204420:CDS
AAAGCAGAAGCATGGCTACC+AGG 0.533939 2_1:+29562952 None:intergenic
GTTGCAGATATCAGCTAGAT+GGG 0.534301 2_1:-29564415 Msa0204420:intron
ATGTCCAAGTGTCACTTTCA+CGG 0.535146 2_1:-29560832 Msa0204420:CDS
TACTCTGCACACTGATGACT+GGG 0.536048 2_1:+29560376 None:intergenic
TTCCAAAACAAAGTACAAAA+GGG 0.537388 2_1:+29559880 None:intergenic
ATCCGGATAACCCTTAGGTA+TGG 0.541772 2_1:+29563563 None:intergenic
GGTGACTCAAAGATATGGTA+TGG 0.542015 2_1:-29562979 Msa0204420:CDS
TACATTACCTGAACAATGGA+CGG 0.543477 2_1:+29560663 None:intergenic
CATGAAGAAACTGGTTGTGC+GGG 0.545026 2_1:-29561859 Msa0204420:CDS
GTTTGGGATCTGTTGTTCAT+GGG 0.546196 2_1:-29561366 Msa0204420:CDS
GACTTGTATCTATCTGCTGT+CGG 0.547301 2_1:-29562123 Msa0204420:CDS
CAAGGTGGAACCCAACAAGC+TGG 0.548195 2_1:+29564150 None:intergenic
TACTGATCCGGATAACCCTT+AGG 0.548758 2_1:+29563558 None:intergenic
CCCTCCGAGGAGGAAATTGA+AGG 0.549208 2_1:-29563781 Msa0204420:CDS
GCCTTCAATTTCCTCCTCGG+AGG 0.551103 2_1:+29563780 None:intergenic
ATCAATTTGCTGAATACGGG+TGG 0.552299 2_1:+29564086 None:intergenic
ATATGCCATAAGGTTCGGCT+AGG 0.552916 2_1:+29564187 None:intergenic
TCCATCAATTCTTAAAGATG+AGG 0.553059 2_1:-29562722 Msa0204420:CDS
CTAAGACTTTCAGGAGACTC+AGG 0.555487 2_1:+29564675 None:intergenic
ACAATCCTACATATGCCATA+AGG 0.556142 2_1:+29564177 None:intergenic
ATCACAGAGCAAAGGAGTCT+AGG 0.556463 2_1:-29560756 Msa0204420:CDS
CCATGCGTTAACCAATCGAC+AGG 0.557899 2_1:+29562583 None:intergenic
TAAAATGTTTCAGGTTACAA+TGG 0.561074 2_1:-29560859 Msa0204420:intron
TGACACTTCCTGGAGATGTA+GGG 0.563083 2_1:+29560335 None:intergenic
AAGATATGGTATGGAGTACC+TGG 0.563266 2_1:-29562970 Msa0204420:CDS
CTTCTTCTAACAGCATGTTG+AGG 0.565189 2_1:-29563037 Msa0204420:intron
CATGAAGAGTTAGCTCTGCA+AGG 0.567369 2_1:+29562464 None:intergenic
ATAGGCCGACATGCTTCAGA+TGG 0.567817 2_1:+29564390 None:intergenic
GCAATAAATGATAAAATGCA+GGG 0.567915 2_1:-29559748 Msa0204420:three_prime_UTR
GATCAGGCTATAGGCAACAT+AGG 0.569394 2_1:-29560247 Msa0204420:CDS
CAGAATGATACCTTGAAAAG+AGG 0.569627 2_1:+29561116 None:intergenic
AATTCTTGTACATTTGATGG+TGG 0.570192 2_1:-29561541 Msa0204420:CDS
ACAAGAGGTGGATGGAGACA+AGG 0.570762 2_1:-29561884 Msa0204420:CDS
TCTTTCTCCTTAAGAAGGCA+AGG 0.571859 2_1:+29564132 None:intergenic
TGTTTACATTACCTGAACAA+TGG 0.571970 2_1:+29560659 None:intergenic
AATACCTCAACTTCATCTGT+TGG 0.573597 2_1:+29563733 None:intergenic
CTTCGGAATGGTTTCTGCCG+AGG 0.574133 2_1:-29561929 Msa0204420:CDS
AATGGAATTGGATGCCAAAG+AGG 0.575222 2_1:-29565281 Msa0204420:intron
GAAAGATGGAGTTCTTACTA+AGG 0.575446 2_1:-29562398 Msa0204420:CDS
TTCCCAACACTTATCTGCTG+AGG 0.577377 2_1:+29560806 None:intergenic
AACTGGTTGTGCGGGAACCA+GGG 0.577770 2_1:-29561851 Msa0204420:CDS
GTACAGAACCTGGTAGTCGC+GGG 0.577977 2_1:+29563505 None:intergenic
CCATCAATTCTTAAAGATGA+GGG 0.579325 2_1:-29562721 Msa0204420:CDS
GTCTTCACAACAGAAGATGA+AGG 0.582987 2_1:+29561595 None:intergenic
CTAGTTCCATGGCTGTATGT+TGG 0.583650 2_1:-29563450 Msa0204420:CDS
GATAGTCATAGACAAAGATA+AGG 0.583705 2_1:-29561725 Msa0204420:CDS
TTGCATGAATAAACAAGAGG+TGG 0.585885 2_1:-29561896 Msa0204420:CDS
AATGTTTCAGGTTACAATGG+AGG 0.588047 2_1:-29560856 Msa0204420:intron
TGAATGTAGCTCCTGTCGAT+TGG 0.588215 2_1:-29562594 Msa0204420:CDS
TCGGCGCGCTAAGGGTTACA+AGG 0.594676 2_1:+29561779 None:intergenic
TCTCAGGAGTACTAGTTCCA+TGG 0.597637 2_1:-29563461 Msa0204420:CDS
TTGTAAACTGTAAAGTTCAA+CGG 0.597924 2_1:+29562552 None:intergenic
GCAGCCAACAGATGAAGTTG+AGG 0.598144 2_1:-29563737 Msa0204420:intron
AGAGCTAACTCTTCATGGAA+AGG 0.598601 2_1:-29562458 Msa0204420:CDS
TGCCATAAGGTTCGGCTAGG+GGG 0.604755 2_1:+29564190 None:intergenic
TTGAAATGGAGAAGCTACTG+TGG 0.606319 2_1:-29562421 Msa0204420:CDS
TCATGAAGAAACTGGTTGTG+CGG 0.608614 2_1:-29561860 Msa0204420:CDS
CAAGAGGTGGATGGAGACAA+GGG 0.610819 2_1:-29561883 Msa0204420:CDS
GGTTTCTGCCGAGGCCAGTG+AGG 0.611148 2_1:-29561920 Msa0204420:CDS
AAACCGAAGGGAGCCCTCCG+AGG 0.611498 2_1:-29563794 Msa0204420:CDS
ATGAAGAGTTAGCTCTGCAA+GGG 0.613991 2_1:+29562465 None:intergenic
ATGAATAAACAAGAGGTGGA+TGG 0.615332 2_1:-29561892 Msa0204420:CDS
GTTTCCGTGAAAGTGACACT+TGG 0.616503 2_1:+29560828 None:intergenic
TATTGCAGATAGCCATAACA+AGG 0.619186 2_1:-29561698 Msa0204420:CDS
AGAAATACGGATTTCAAGCA+GGG 0.620076 2_1:-29563927 Msa0204420:CDS
AGTACAGAACCTGGTAGTCG+CGG 0.621060 2_1:+29563504 None:intergenic
AAAGTCTTTAAACGTGAAGT+CGG 0.621637 2_1:+29563903 None:intergenic
TATGCCATAAGGTTCGGCTA+GGG 0.624920 2_1:+29564188 None:intergenic
TGAAATGGAGAAGCTACTGT+GGG 0.625781 2_1:-29562420 Msa0204420:CDS
TGATGCTAAAGAAATTAACT+CGG 0.626787 2_1:+29561198 None:intergenic
ATTAGGTCAATGATGATCGA+GGG 0.628372 2_1:+29559925 None:intergenic
CCTGTCGATTGGTTAACGCA+TGG 0.630097 2_1:-29562583 Msa0204420:CDS
ATAGTAACCACCAAAACCGA+AGG 0.630250 2_1:-29563807 Msa0204420:CDS
CACATGCCAACATACAGCCA+TGG 0.631048 2_1:+29563444 None:intergenic
AAGGCATCATCCATACCTAA+GGG 0.631276 2_1:-29563573 Msa0204420:CDS
CCGAAGGGAGCCCTCCGAGG+AGG 0.631741 2_1:-29563791 Msa0204420:CDS
AATTAGGTCAATGATGATCG+AGG 0.632605 2_1:+29559924 None:intergenic
GGATAAAGATGGAAGAAGAG+AGG 0.633004 2_1:-29562236 Msa0204420:CDS
TAACAAGGGTGATTCAGTAG+AGG 0.633767 2_1:-29561683 Msa0204420:CDS
TCAAAACTTAGTACAGAACC+TGG 0.635235 2_1:+29563495 None:intergenic
ATGCCATAAGGTTCGGCTAG+GGG 0.638535 2_1:+29564189 None:intergenic
ACTCCAAATCAGGAACATGT+AGG 0.644682 2_1:-29563999 Msa0204420:CDS
CAGGCTATAGGCAACATAGG+AGG 0.652485 2_1:-29560244 Msa0204420:CDS
ATTGTAGGTGTACTATGGAG+CGG 0.652824 2_1:-29563631 Msa0204420:intron
GTGGAACCCAACAAGCTGGA+GGG 0.653359 2_1:+29564154 None:intergenic
GGTGGAACCCAACAAGCTGG+AGG 0.654238 2_1:+29564153 None:intergenic
GGGATCCATCTGAAGCATGT+CGG 0.655114 2_1:-29564395 Msa0204420:CDS
TAGGGCTACTTGAACAACAT+AGG 0.657747 2_1:+29560296 None:intergenic
CATGTGACAATGATGTCTTA+CGG 0.661845 2_1:+29562527 None:intergenic
ATTTGATGGTGGAAAACTTG+AGG 0.662789 2_1:-29561530 Msa0204420:CDS
TTCTCCTTAAGAAGGCAAGG+TGG 0.663402 2_1:+29564135 None:intergenic
AGTCATAGACAAAGATAAGG+CGG 0.664329 2_1:-29561722 Msa0204420:CDS
GTGACAAAATCACAGAGCAA+AGG 0.668780 2_1:-29560764 Msa0204420:CDS
CTGACGCACAATGTTCTGAG+TGG 0.675673 2_1:-29560135 Msa0204420:CDS
GCAGAGTATTGGAATCACAA+AGG 0.682618 2_1:-29560361 Msa0204420:CDS
TAGTAACCACCAAAACCGAA+GGG 0.693720 2_1:-29563806 Msa0204420:CDS
TTAAAATGACTATCCAACGT+CGG 0.698267 2_1:+29560035 None:intergenic
GGTTTGCATGAATAAACAAG+AGG 0.708956 2_1:-29561899 Msa0204420:CDS
ACCCACAATTGAACCCAGAG+TGG 0.709442 2_1:+29562635 None:intergenic
TCGCACTGTTCAGCACTCTG+GGG 0.722408 2_1:-29562686 Msa0204420:CDS
AAATGCAGGGAAACTACACA+CGG 0.725422 2_1:-29559735 Msa0204420:three_prime_UTR
ATTGCAGATAGCCATAACAA+GGG 0.737688 2_1:-29561697 Msa0204420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAGTTGTAAATTAAACAA+TGG + chr2_1:29561313-29561332 None:intergenic 15.0%
!!! TGTTTAATTTACAACTATAT+TGG - chr2_1:29561314-29561333 Msa0204420:intron 15.0%
!!! CTTATTTTTCATGAAAAAAT+GGG - chr2_1:29561740-29561759 Msa0204420:CDS 15.0%
!! AAAGTTCAAAAAATTTGAAA+TGG - chr2_1:29562577-29562596 Msa0204420:CDS 15.0%
!!! AGTTTAATTTTAAAACGATT+TGG - chr2_1:29563766-29563785 Msa0204420:CDS 15.0%
!!! TATGATTTCATTTTTAAACT+CGG + chr2_1:29563937-29563956 None:intergenic 15.0%
!!! GGTTAATTTATATATTTTGT+CGG + chr2_1:29564071-29564090 None:intergenic 15.0%
!!! TTTTAATTTAGTCATAAGTT+AGG - chr2_1:29564994-29565013 Msa0204420:intron 15.0%
!!! TATGAGTTTTTATCTTTCAT+AGG - chr2_1:29560005-29560024 Msa0204420:three_prime_UTR 20.0%
!!! ATGAGTTTTTATCTTTCATA+GGG - chr2_1:29560006-29560025 Msa0204420:three_prime_UTR 20.0%
!! ATGCAAGAATTCTAAATTAA+TGG + chr2_1:29560268-29560287 None:intergenic 20.0%
!! TTCAACAACAAAACAAATAT+TGG + chr2_1:29560490-29560509 None:intergenic 20.0%
!!! TCTATTCTTTTTTCATATGT+TGG - chr2_1:29560560-29560579 Msa0204420:intron 20.0%
!!! TAAAAAAGTACTTCAATAGT+TGG + chr2_1:29560673-29560692 None:intergenic 20.0%
!!! GCTTATTTTTCATGAAAAAA+TGG - chr2_1:29561739-29561758 Msa0204420:CDS 20.0%
!! AAGAAGAAAATAATGACAAT+GGG + chr2_1:29561961-29561980 None:intergenic 20.0%
!!! ATTTTGGGAATTGTTTTATA+TGG - chr2_1:29562230-29562249 Msa0204420:CDS 20.0%
!! TTAAGACAAGAATATTTATC+AGG + chr2_1:29562928-29562947 None:intergenic 20.0%
!!! ACTTTTTCAACTACAATTTT+GGG + chr2_1:29563543-29563562 None:intergenic 20.0%
!! TTCAAAAGTAAACTAATCAA+TGG + chr2_1:29563747-29563766 None:intergenic 20.0%
!! CAAATTAATACCAAAAACTT+TGG + chr2_1:29564742-29564761 None:intergenic 20.0%
!! AATTTAACTGAAGAAATTTC+TGG - chr2_1:29565035-29565054 Msa0204420:intron 20.0%
!! ATTTAACTGAAGAAATTTCT+GGG - chr2_1:29565036-29565055 Msa0204420:intron 20.0%
! TTGAATGAAACAAATGGAAT+TGG - chr2_1:29559719-29559738 Msa0204420:three_prime_UTR 25.0%
!!! TTATCTGTGTTCATTGATTT+TGG - chr2_1:29559858-29559877 Msa0204420:three_prime_UTR 25.0%
!! TTTTTATCTTTCATAGGGTT+TGG - chr2_1:29560011-29560030 Msa0204420:three_prime_UTR 25.0%
!! TTAGAAATTTTCATGTGATG+CGG - chr2_1:29560039-29560058 Msa0204420:three_prime_UTR 25.0%
! GTAATCTACATATGTGATAT+TGG - chr2_1:29560109-29560128 Msa0204420:CDS 25.0%
! ATAAAATACCGATGCATTAA+AGG + chr2_1:29560217-29560236 None:intergenic 25.0%
!!! GAATTCTTGCATATTTTTTC+AGG - chr2_1:29560276-29560295 Msa0204420:CDS 25.0%
!!! TTTTTACTTCTAAGACTTTC+AGG + chr2_1:29560349-29560368 None:intergenic 25.0%
! TGAAAGTCTTAGAAGTAAAA+AGG - chr2_1:29560348-29560367 Msa0204420:CDS 25.0%
!! TCATTGACTACGTTATATAT+TGG + chr2_1:29560525-29560544 None:intergenic 25.0%
! CGATATAAACAATATGAAGA+TGG + chr2_1:29560705-29560724 None:intergenic 25.0%
! AAATATCTTTCTCCTTAAGA+AGG + chr2_1:29560888-29560907 None:intergenic 25.0%
! TTCTTAAGGAGAAAGATATT+TGG - chr2_1:29560887-29560906 Msa0204420:intron 25.0%
! TCTTAAGGAGAAAGATATTT+GGG - chr2_1:29560888-29560907 Msa0204420:intron 25.0%
!!! TAAATCAATTTGCTGAATAC+GGG + chr2_1:29560932-29560951 None:intergenic 25.0%
!!! GTAAATCAATTTGCTGAATA+CGG + chr2_1:29560933-29560952 None:intergenic 25.0%
! AACCTATGAAGAAAAAAAGT+AGG - chr2_1:29560965-29560984 Msa0204420:intron 25.0%
! ACCTATGAAGAAAAAAAGTA+GGG - chr2_1:29560966-29560985 Msa0204420:intron 25.0%
! ACAATACACTCTTATATTGT+AGG - chr2_1:29561366-29561385 Msa0204420:CDS 25.0%
! AATATGCCAACATAAATAAG+TGG + chr2_1:29561839-29561858 None:intergenic 25.0%
! GAAGAAGAAAATAATGACAA+TGG + chr2_1:29561962-29561981 None:intergenic 25.0%
! TTGTAAACTGTAAAGTTCAA+CGG + chr2_1:29562463-29562482 None:intergenic 25.0%
!! TCGTTCTTATTTAGTTACAA+AGG - chr2_1:29562699-29562718 Msa0204420:CDS 25.0%
! TTATGGGAAAGTAAAAACTT+CGG - chr2_1:29563066-29563085 Msa0204420:intron 25.0%
! TCACTATCTATACTTTCATT+CGG + chr2_1:29563255-29563274 None:intergenic 25.0%
!!! GACTTTTTCAACTACAATTT+TGG + chr2_1:29563544-29563563 None:intergenic 25.0%
! TGATGCTAAAGAAATTAACT+CGG + chr2_1:29563817-29563836 None:intergenic 25.0%
!!! TTTCATTTTTAAACTCGGTA+CGG + chr2_1:29563932-29563951 None:intergenic 25.0%
! TAAAAAACTAACGAAGTTTG+TGG + chr2_1:29564005-29564024 None:intergenic 25.0%
!! AACCAACTATATGAGTTTTA+TGG - chr2_1:29564087-29564106 Msa0204420:CDS 25.0%
! AACCATAAAACTCATATAGT+TGG + chr2_1:29564092-29564111 None:intergenic 25.0%
! CTTATTCCATAAAATGTTTC+AGG - chr2_1:29564144-29564163 Msa0204420:CDS 25.0%
!! TTGTAACCTGAAACATTTTA+TGG + chr2_1:29564153-29564172 None:intergenic 25.0%
!!! TAAAATGTTTCAGGTTACAA+TGG - chr2_1:29564153-29564172 Msa0204420:CDS 25.0%
!!! ATTAACGGTTTTAGAATGTT+CGG - chr2_1:29564316-29564335 Msa0204420:intron 25.0%
! ACATTAGAAAAACTACAAAC+AGG + chr2_1:29564418-29564437 None:intergenic 25.0%
! GAACTAATACACGTATAATT+TGG - chr2_1:29564534-29564553 Msa0204420:intron 25.0%
! TAATACCAAAAACTTTGGTA+GGG + chr2_1:29564737-29564756 None:intergenic 25.0%
! TTAATACCAAAAACTTTGGT+AGG + chr2_1:29564738-29564757 None:intergenic 25.0%
! GATGAAATCAATACTACAAA+AGG - chr2_1:29564812-29564831 Msa0204420:intron 25.0%
! TTCCAAAACAAAGTACAAAA+GGG + chr2_1:29565135-29565154 None:intergenic 25.0%
! ATTCCAAAACAAAGTACAAA+AGG + chr2_1:29565136-29565155 None:intergenic 25.0%
! TGCAATAAATGATAAAATGC+AGG - chr2_1:29565263-29565282 Msa0204420:intron 25.0%
! GCAATAAATGATAAAATGCA+GGG - chr2_1:29565264-29565283 Msa0204420:intron 25.0%
GTTTGAAAATCTAACCTCTT+TGG + chr2_1:29559748-29559767 None:intergenic 30.0%
AGAGAAATCATGCATTGTTA+GGG + chr2_1:29559770-29559789 None:intergenic 30.0%
AAGAGAAATCATGCATTGTT+AGG + chr2_1:29559771-29559790 None:intergenic 30.0%
TAACATTGTATCTCTGTTTC+TGG - chr2_1:29559927-29559946 Msa0204420:three_prime_UTR 30.0%
! GCAAGAAAAGTACAAAAGAT+TGG + chr2_1:29560409-29560428 None:intergenic 30.0%
TTCCTATTTGTTCCAAAGAA+CGG + chr2_1:29560431-29560450 None:intergenic 30.0%
TCAATAGTTGGATGAAAAAC+AGG + chr2_1:29560661-29560680 None:intergenic 30.0%
CCTATGAAGAAAAAAAGTAG+GGG - chr2_1:29560967-29560986 Msa0204420:intron 30.0%
AAAGTCTTTAAACGTGAAGT+CGG + chr2_1:29561112-29561131 None:intergenic 30.0%
! TACTTTAAGGAATGCTACTT+TGG - chr2_1:29561147-29561166 Msa0204420:CDS 30.0%
!! ACTTTAAGGAATGCTACTTT+GGG - chr2_1:29561148-29561167 Msa0204420:CDS 30.0%
TTGAAAGATGCAAATGAAGA+TGG - chr2_1:29561171-29561190 Msa0204420:CDS 30.0%
CTTATATTGTAGGTGTACTA+TGG - chr2_1:29561376-29561395 Msa0204420:CDS 30.0%
! ATTTGGAAGTGGTTTTTCTA+AGG - chr2_1:29561420-29561439 Msa0204420:CDS 30.0%
!! ATCGTTTTTGGAAGCTATTT+GGG + chr2_1:29561931-29561950 None:intergenic 30.0%
!! TATCGTTTTTGGAAGCTATT+TGG + chr2_1:29561932-29561951 None:intergenic 30.0%
AAATAGCTTCCAAAAACGAT+AGG - chr2_1:29561931-29561950 Msa0204420:CDS 30.0%
GTAGATAATTAAGCGAATAG+AGG + chr2_1:29562008-29562027 None:intergenic 30.0%
TCGCTTAATTATCTACACTT+TGG - chr2_1:29562012-29562031 Msa0204420:CDS 30.0%
! CAGAACTTTCACTAGATTTT+GGG - chr2_1:29562215-29562234 Msa0204420:CDS 30.0%
TCCATCAATTCTTAAAGATG+AGG - chr2_1:29562290-29562309 Msa0204420:intron 30.0%
CCATCAATTCTTAAAGATGA+GGG - chr2_1:29562291-29562310 Msa0204420:intron 30.0%
!! AATTTGTCATTACTTTTCCG+AGG - chr2_1:29562349-29562368 Msa0204420:intron 30.0%
!! ATTTGTCATTACTTTTCCGA+GGG - chr2_1:29562350-29562369 Msa0204420:intron 30.0%
! TCACATGACAAGCTTTTATT+TGG - chr2_1:29562501-29562520 Msa0204420:CDS 30.0%
! AGTTCTTACTAAGGCATTTA+AGG - chr2_1:29562623-29562642 Msa0204420:CDS 30.0%
! TGATTCCTTATATGCTTTTC+TGG - chr2_1:29562729-29562748 Msa0204420:CDS 30.0%
GATAGTCATAGACAAAGATA+AGG - chr2_1:29563287-29563306 Msa0204420:intron 30.0%
ATGTTGTTCAGAGACAAAAA+AGG - chr2_1:29563359-29563378 Msa0204420:intron 30.0%
AAAAAAGGAACAAGACAACA+TGG - chr2_1:29563374-29563393 Msa0204420:intron 30.0%
CACAATTCTTGTACATTTGA+TGG - chr2_1:29563468-29563487 Msa0204420:CDS 30.0%
AATTCTTGTACATTTGATGG+TGG - chr2_1:29563471-29563490 Msa0204420:CDS 30.0%
AAGCATGCAATATATCCAAA+AGG - chr2_1:29563684-29563703 Msa0204420:intron 30.0%
!! GATTTGGTAAACACTTTTGT+AGG - chr2_1:29563782-29563801 Msa0204420:CDS 30.0%
! TATATATTTTGTCGGAGTCA+CGG + chr2_1:29564063-29564082 None:intergenic 30.0%
TGTTTACATTACCTGAACAA+TGG + chr2_1:29564356-29564375 None:intergenic 30.0%
TAATCCAGTTCAAAGCAATT+TGG + chr2_1:29564477-29564496 None:intergenic 30.0%
CTGGATTAACATGCTTATTA+CGG - chr2_1:29564489-29564508 Msa0204420:intron 30.0%
AAGATCATAAACGATTCTTC+TGG - chr2_1:29564558-29564577 Msa0204420:intron 30.0%
! TGGTATTAATTTGACTGATC+AGG - chr2_1:29564749-29564768 Msa0204420:intron 30.0%
! ATTCAGAAAGCTTTGTAGAT+AGG - chr2_1:29564930-29564949 Msa0204420:intron 30.0%
TTAAAATGACTATCCAACGT+CGG + chr2_1:29564980-29564999 None:intergenic 30.0%
CAAGTACCAAAATTTCATCT+AGG + chr2_1:29565067-29565086 None:intergenic 30.0%
TGCAAAATGCATCTGTAATT+AGG + chr2_1:29565107-29565126 None:intergenic 30.0%
!!! CTCTTATCCTCTGTTTTTTG+TGG - chr2_1:29559810-29559829 Msa0204420:three_prime_UTR 35.0%
TTGTGATCCACAAAAAACAG+AGG + chr2_1:29559820-29559839 None:intergenic 35.0%
ACACATAGGTCGAAAAACAA+GGG + chr2_1:29559978-29559997 None:intergenic 35.0%
AAATACCGATGCATTAAAGG+AGG + chr2_1:29560214-29560233 None:intergenic 35.0%
! AAGTAAAAAGGTATGTAGCC+AGG - chr2_1:29560360-29560379 Msa0204420:CDS 35.0%
ACAGGTGCTTCATCAATTAT+AGG + chr2_1:29560643-29560662 None:intergenic 35.0%
ACAATCCTACATATGCCATA+AGG + chr2_1:29560838-29560857 None:intergenic 35.0%
!!! CCCCTACTTTTTTTCTTCAT+AGG + chr2_1:29560970-29560989 None:intergenic 35.0%
TGAAGAAAAAAAGTAGGGGA+AGG - chr2_1:29560971-29560990 Msa0204420:intron 35.0%
! ATTAGCTTCAGAAGCTGATT+TGG + chr2_1:29561046-29561065 None:intergenic 35.0%
! TCTGAAGCTGATGAGAAATA+CGG - chr2_1:29561072-29561091 Msa0204420:intron 35.0%
AGAAATACGGATTTCAAGCA+GGG - chr2_1:29561085-29561104 Msa0204420:intron 35.0%
! GCAATATGCTAGCTACTTTA+AGG - chr2_1:29561134-29561153 Msa0204420:CDS 35.0%
AATACCTCAACTTCATCTGT+TGG + chr2_1:29561282-29561301 None:intergenic 35.0%
TCAAAACTTAGTACAGAACC+TGG + chr2_1:29561520-29561539 None:intergenic 35.0%
!! GGTTCTGTACTAAGTTTTGA+AGG - chr2_1:29561520-29561539 Msa0204420:CDS 35.0%
! TGTGCTTTTCATCGTTTTGT+TGG - chr2_1:29561587-29561606 Msa0204420:CDS 35.0%
!! GTGCTTTTCATCGTTTTGTT+GGG - chr2_1:29561588-29561607 Msa0204420:CDS 35.0%
CAACAAAATCATCAGTCTGT+TGG - chr2_1:29561798-29561817 Msa0204420:CDS 35.0%
!! ATGGGTTATCCTATCGTTTT+TGG + chr2_1:29561943-29561962 None:intergenic 35.0%
! ACTTTGGTGACTCAAAGATA+TGG - chr2_1:29562028-29562047 Msa0204420:CDS 35.0%
!!! CATTTTCTAAAGCAGAAGCA+TGG + chr2_1:29562071-29562090 None:intergenic 35.0%
ACCAAATCTACTCAATGATC+TGG - chr2_1:29562128-29562147 Msa0204420:CDS 35.0%
ACCAGATCATTGAGTAGATT+TGG + chr2_1:29562132-29562151 None:intergenic 35.0%
CCTGCTATACACATAATGAT+AGG + chr2_1:29562177-29562196 None:intergenic 35.0%
CCTATCATTATGTGTATAGC+AGG - chr2_1:29562174-29562193 Msa0204420:CDS 35.0%
CCAAAATCTAGTGAAAGTTC+TGG + chr2_1:29562217-29562236 None:intergenic 35.0%
! CCAGAACTTTCACTAGATTT+TGG - chr2_1:29562214-29562233 Msa0204420:CDS 35.0%
! TATGATTTTCATCTTCACGC+AGG - chr2_1:29562254-29562273 Msa0204420:intron 35.0%
! CCCTCATCTTTAAGAATTGA+TGG + chr2_1:29562294-29562313 None:intergenic 35.0%
!! TTTGTCATTACTTTTCCGAG+GGG - chr2_1:29562351-29562370 Msa0204420:intron 35.0%
TGTAAAGTTCAACGGCATTT+AGG + chr2_1:29562455-29562474 None:intergenic 35.0%
CATGTGACAATGATGTCTTA+CGG + chr2_1:29562488-29562507 None:intergenic 35.0%
GAAAGATGGAGTTCTTACTA+AGG - chr2_1:29562614-29562633 Msa0204420:CDS 35.0%
! GGTAACCAGAAAAGCATATA+AGG + chr2_1:29562737-29562756 None:intergenic 35.0%
TTCAGCGACTTAAAATGAGT+TGG + chr2_1:29562814-29562833 None:intergenic 35.0%
!! TCATTTTAAGTCGCTGAAGA+TGG - chr2_1:29562816-29562835 Msa0204420:intron 35.0%
!! CATTTTAAGTCGCTGAAGAT+GGG - chr2_1:29562817-29562836 Msa0204420:intron 35.0%
! AAATTGCTTGAAGCACTAGA+AGG - chr2_1:29563024-29563043 Msa0204420:CDS 35.0%
ATTCACTTGCTCTTGAGTTA+TGG - chr2_1:29563049-29563068 Msa0204420:intron 35.0%
TTCACTTGCTCTTGAGTTAT+GGG - chr2_1:29563050-29563069 Msa0204420:intron 35.0%
GGAAAGTAAAAACTTCGGAA+TGG - chr2_1:29563071-29563090 Msa0204420:intron 35.0%
TTTATTCATGCAAACCTCAC+TGG + chr2_1:29563109-29563128 None:intergenic 35.0%
GGTTTGCATGAATAAACAAG+AGG - chr2_1:29563113-29563132 Msa0204420:intron 35.0%
TTGCATGAATAAACAAGAGG+TGG - chr2_1:29563116-29563135 Msa0204420:intron 35.0%
ATGAATAAACAAGAGGTGGA+TGG - chr2_1:29563120-29563139 Msa0204420:intron 35.0%
! ATGACTATTTGACTTATCCC+TGG + chr2_1:29563181-29563200 None:intergenic 35.0%
AGTCATAGACAAAGATAAGG+CGG - chr2_1:29563290-29563309 Msa0204420:intron 35.0%
TATTGCAGATAGCCATAACA+AGG - chr2_1:29563314-29563333 Msa0204420:intron 35.0%
ATTGCAGATAGCCATAACAA+GGG - chr2_1:29563315-29563334 Msa0204420:intron 35.0%
!! ATTTGATGGTGGAAAACTTG+AGG - chr2_1:29563482-29563501 Msa0204420:CDS 35.0%
TTCTGTCAAGCCTATAAGTT+TGG - chr2_1:29563629-29563648 Msa0204420:intron 35.0%
TCTGTCAAGCCTATAAGTTT+GGG - chr2_1:29563630-29563649 Msa0204420:intron 35.0%
ACAACAGATCCCAAACTTAT+AGG + chr2_1:29563642-29563661 None:intergenic 35.0%
ACATAGCTACAGATTCTTGT+TGG + chr2_1:29563845-29563864 None:intergenic 35.0%
!! GTTTCTGAAGTAATTGATGC+TGG - chr2_1:29563863-29563882 Msa0204420:CDS 35.0%
CAGAATGATACCTTGAAAAG+AGG + chr2_1:29563899-29563918 None:intergenic 35.0%
!! CTCTTTTCAAGGTATCATTC+TGG - chr2_1:29563897-29563916 Msa0204420:CDS 35.0%
CCATGAACGGTAAAAAAAAG+AGG + chr2_1:29563982-29564001 None:intergenic 35.0%
!!! CCTCTTTTTTTTACCGTTCA+TGG - chr2_1:29563979-29563998 Msa0204420:CDS 35.0%
!! AATGTTTCAGGTTACAATGG+AGG - chr2_1:29564156-29564175 Msa0204420:CDS 35.0%
! AATGCTTTTCAGAAGCTCTA+AGG + chr2_1:29564299-29564318 None:intergenic 35.0%
!! GAGCTTCTGAAAAGCATTAA+CGG - chr2_1:29564301-29564320 Msa0204420:intron 35.0%
TACATTACCTGAACAATGGA+CGG + chr2_1:29564352-29564371 None:intergenic 35.0%
AGTTCAAAGCAATTTGGTAG+AGG + chr2_1:29564471-29564490 None:intergenic 35.0%
! TCTACCAAATTGCTTTGAAC+TGG - chr2_1:29564470-29564489 Msa0204420:intron 35.0%
! ATGTTCCGACAAACATTTTC+AGG - chr2_1:29564596-29564615 Msa0204420:intron 35.0%
AATTTGACTGATCAGGCTAT+AGG - chr2_1:29564756-29564775 Msa0204420:intron 35.0%
! GTGAAGCCTAGATGAAATTT+TGG - chr2_1:29565058-29565077 Msa0204420:intron 35.0%
ATTAGGTCAATGATGATCGA+GGG + chr2_1:29565090-29565109 None:intergenic 35.0%
AATTAGGTCAATGATGATCG+AGG + chr2_1:29565091-29565110 None:intergenic 35.0%
!! GACCCTTTTGTACTTTGTTT+TGG - chr2_1:29565130-29565149 Msa0204420:intron 35.0%
!!! GTTTTGGAATTTGCCTTTCA+AGG - chr2_1:29565146-29565165 Msa0204420:intron 35.0%
GAATTTGCCTTTCAAGGTTA+AGG - chr2_1:29565152-29565171 Msa0204420:intron 35.0%
!! TTAGCTTTTGCTCGAATCAT+AGG - chr2_1:29565177-29565196 Msa0204420:intron 35.0%
AATGGAATTGGATGCCAAAG+AGG - chr2_1:29559731-29559750 Msa0204420:three_prime_UTR 40.0%
GACACATAGGTCGAAAAACA+AGG + chr2_1:29559979-29559998 None:intergenic 40.0%
ACTCATATAGCTCGACACAT+AGG + chr2_1:29559992-29560011 None:intergenic 40.0%
TTCATGTGATGCGGTTGATT+AGG - chr2_1:29560048-29560067 Msa0204420:three_prime_UTR 40.0%
! GATGCGGTTGATTAGGTTTT+CGG - chr2_1:29560055-29560074 Msa0204420:three_prime_UTR 40.0%
TTCATGTGATGCGGTTGATT+AGG - chr2_1:29560048-29560067 Msa0204420:three_prime_UTR 40.0%
! GATGCGGTTGATTAGGTTTT+CGG - chr2_1:29560055-29560074 Msa0204420:three_prime_UTR 40.0%
CGTTTCCTCCTTTAATGCAT+CGG - chr2_1:29560206-29560225 Msa0204420:CDS 40.0%
!! TTTTTAGGCTTGTGCTGAAG+AGG + chr2_1:29560307-29560326 None:intergenic 40.0%
TCTTCAGCACAAGCCTAAAA+AGG - chr2_1:29560306-29560325 Msa0204420:CDS 40.0%
! TCAGGTGCATTGTCCTTTTT+AGG + chr2_1:29560322-29560341 None:intergenic 40.0%
! GTACTTTTCTTGCCGTTCTT+TGG - chr2_1:29560416-29560435 Msa0204420:intron 40.0%
!! TGCCGTTCTTTGGAACAAAT+AGG - chr2_1:29560426-29560445 Msa0204420:intron 40.0%
TGTTGCAGATATCAGCTAGA+TGG - chr2_1:29560596-29560615 Msa0204420:intron 40.0%
GTTGCAGATATCAGCTAGAT+GGG - chr2_1:29560597-29560616 Msa0204420:intron 40.0%
TTTGCTTACTCTGTTTCCTC+AGG - chr2_1:29560762-29560781 Msa0204420:CDS 40.0%
AGTGTATCTTCAAACTCCTG+AGG + chr2_1:29560781-29560800 None:intergenic 40.0%
CCTACATATGCCATAAGGTT+CGG + chr2_1:29560833-29560852 None:intergenic 40.0%
TCTTTCTCCTTAAGAAGGCA+AGG + chr2_1:29560883-29560902 None:intergenic 40.0%
CTGAATACGGGTGGAAAATT+CGG + chr2_1:29560920-29560939 None:intergenic 40.0%
!! ATCAATTTGCTGAATACGGG+TGG + chr2_1:29560929-29560948 None:intergenic 40.0%
ACTCCAAATCAGGAACATGT+AGG - chr2_1:29561013-29561032 Msa0204420:intron 40.0%
TCTCCTACATGTTCCTGATT+TGG + chr2_1:29561019-29561038 None:intergenic 40.0%
GAGAAATACGGATTTCAAGC+AGG - chr2_1:29561084-29561103 Msa0204420:intron 40.0%
ATAGTAACCACCAAAACCGA+AGG - chr2_1:29561205-29561224 Msa0204420:CDS 40.0%
TAGTAACCACCAAAACCGAA+GGG - chr2_1:29561206-29561225 Msa0204420:CDS 40.0%
AGGAAATTGAAGGCGAATAC+TGG - chr2_1:29561241-29561260 Msa0204420:intron 40.0%
ATTGTAGGTGTACTATGGAG+CGG - chr2_1:29561381-29561400 Msa0204420:CDS 40.0%
! GACTTGGAAACTGGAGTATT+TGG - chr2_1:29561403-29561422 Msa0204420:CDS 40.0%
! GAAACTGGAGTATTTGGAAG+TGG - chr2_1:29561409-29561428 Msa0204420:CDS 40.0%
! TAAGGCATCATCCATACCTA+AGG - chr2_1:29561438-29561457 Msa0204420:CDS 40.0%
! AAGGCATCATCCATACCTAA+GGG - chr2_1:29561439-29561458 Msa0204420:CDS 40.0%
ATCCATACCTAAGGGTTATC+CGG - chr2_1:29561447-29561466 Msa0204420:CDS 40.0%
! ATCAGTATGCACTTTCTGGT+TGG - chr2_1:29561470-29561489 Msa0204420:CDS 40.0%
TTTGAAGGAAGTGACATCTC+AGG - chr2_1:29561535-29561554 Msa0204420:CDS 40.0%
!! TCATCGTTTTGTTGGGTAAG+TGG - chr2_1:29561595-29561614 Msa0204420:CDS 40.0%
! GCAGAGTTTAAGACATGACA+TGG - chr2_1:29561657-29561676 Msa0204420:CDS 40.0%
CAACATAAATAAGTGGAGCC+TGG + chr2_1:29561832-29561851 None:intergenic 40.0%
CAGGCTCCACTTATTTATGT+TGG - chr2_1:29561830-29561849 Msa0204420:CDS 40.0%
CTTCTTCTAACAGCATGTTG+AGG - chr2_1:29561975-29561994 Msa0204420:CDS 40.0%
GGTGACTCAAAGATATGGTA+TGG - chr2_1:29562033-29562052 Msa0204420:CDS 40.0%
! AAGATATGGTATGGAGTACC+TGG - chr2_1:29562042-29562061 Msa0204420:CDS 40.0%
!! TTGTCATTACTTTTCCGAGG+GGG - chr2_1:29562352-29562371 Msa0204420:intron 40.0%
!! GCTTTTATTTGGATCATCGC+TGG - chr2_1:29562512-29562531 Msa0204420:CDS 40.0%
!! ATGAAGAGTTAGCTCTGCAA+GGG + chr2_1:29562550-29562569 None:intergenic 40.0%
AGAGCTAACTCTTCATGGAA+AGG - chr2_1:29562554-29562573 Msa0204420:CDS 40.0%
TTGAAATGGAGAAGCTACTG+TGG - chr2_1:29562591-29562610 Msa0204420:CDS 40.0%
TGAAATGGAGAAGCTACTGT+GGG - chr2_1:29562592-29562611 Msa0204420:CDS 40.0%
TCCTTGCCTGTCAGAAAAAA+CGG + chr2_1:29562759-29562778 None:intergenic 40.0%
GGATAAAGATGGAAGAAGAG+AGG - chr2_1:29562776-29562795 Msa0204420:intron 40.0%
GACTTGTATCTATCTGCTGT+CGG - chr2_1:29562889-29562908 Msa0204420:CDS 40.0%
TTTGTTCTGCTCATGCGAAA+TGG - chr2_1:29562957-29562976 Msa0204420:CDS 40.0%
TCATGAAGAAACTGGTTGTG+CGG - chr2_1:29563152-29563171 Msa0204420:intron 40.0%
CTACTGAATCACCCTTGTTA+TGG + chr2_1:29563329-29563348 None:intergenic 40.0%
TAACAAGGGTGATTCAGTAG+AGG - chr2_1:29563329-29563348 Msa0204420:intron 40.0%
CAACAGAAGATGAAGGTGAT+AGG + chr2_1:29563413-29563432 None:intergenic 40.0%
GTCTTCACAACAGAAGATGA+AGG + chr2_1:29563420-29563439 None:intergenic 40.0%
CAGAAGTTTCATCATGCTCT+AGG - chr2_1:29563439-29563458 Msa0204420:CDS 40.0%
CAAAGATATACTCGCATTCG+TGG + chr2_1:29563574-29563593 None:intergenic 40.0%
! AGTTTGGGATCTGTTGTTCA+TGG - chr2_1:29563645-29563664 Msa0204420:intron 40.0%
! GTTTGGGATCTGTTGTTCAT+GGG - chr2_1:29563646-29563665 Msa0204420:intron 40.0%
! ATCCAAAAGGTATGCTGTAG+TGG - chr2_1:29563697-29563716 Msa0204420:intron 40.0%
! TCCAAAAGGTATGCTGTAGT+GGG - chr2_1:29563698-29563717 Msa0204420:intron 40.0%
!! TGCTGTAGTGGGATCTTTTA+TGG - chr2_1:29563709-29563728 Msa0204420:intron 40.0%
GTAATTGATGCTGGACTTCT+AGG - chr2_1:29563872-29563891 Msa0204420:CDS 40.0%
!!! ACTTCTAGGACCTCTTTTCA+AGG - chr2_1:29563886-29563905 Msa0204420:CDS 40.0%
TTAAACTCGGTACGGAAACA+AGG + chr2_1:29563924-29563943 None:intergenic 40.0%
!! ATGTCCAAGTGTCACTTTCA+CGG - chr2_1:29564180-29564199 Msa0204420:CDS 40.0%
AAACCTCAGCAGATAAGTGT+TGG - chr2_1:29564203-29564222 Msa0204420:CDS 40.0%
AACCTCAGCAGATAAGTGTT+GGG - chr2_1:29564204-29564223 Msa0204420:CDS 40.0%
GTGACAAAATCACAGAGCAA+AGG - chr2_1:29564248-29564267 Msa0204420:intron 40.0%
!!! CTTTTCAGAAGCTCTAAGGA+AGG + chr2_1:29564295-29564314 None:intergenic 40.0%
GATGGCCTGAAAATGTTTGT+CGG + chr2_1:29564604-29564623 None:intergenic 40.0%
!! GCAGAGTATTGGAATCACAA+AGG - chr2_1:29564651-29564670 Msa0204420:intron 40.0%
! AGTAGCCCTACCAAAGTTTT+TGG - chr2_1:29564729-29564748 Msa0204420:intron 40.0%
ATCTCAATTCTTTCCGACGT+TGG - chr2_1:29564964-29564983 Msa0204420:intron 40.0%
GCTAAAGCCTTAACCTTGAA+AGG + chr2_1:29565162-29565181 None:intergenic 40.0%
AAATGCAGGGAAACTACACA+CGG - chr2_1:29565277-29565296 Msa0204420:intron 40.0%
! GGTTTTCGGTTCATGTGATG+CGG - chr2_1:29560069-29560088 Msa0204420:exon 45.0%
CTAAGACTTTCAGGAGACTC+AGG + chr2_1:29560340-29560359 None:intergenic 45.0%
TATGCCATAAGGTTCGGCTA+GGG + chr2_1:29560827-29560846 None:intergenic 45.0%
ATATGCCATAAGGTTCGGCT+AGG + chr2_1:29560828-29560847 None:intergenic 45.0%
CCGAACCTTATGGCATATGT+AGG - chr2_1:29560830-29560849 Msa0204420:CDS 45.0%
TTCTCCTTAAGAAGGCAAGG+TGG + chr2_1:29560880-29560899 None:intergenic 45.0%
GAAGGAAGCGAAAACGTAGA+AGG - chr2_1:29560989-29561008 Msa0204420:intron 45.0%
CGTAGAAGGAACTCCAAATC+AGG - chr2_1:29561003-29561022 Msa0204420:intron 45.0%
TTCGCCTTCAATTTCCTCCT+CGG + chr2_1:29561238-29561257 None:intergenic 45.0%
ATCCGGATAACCCTTAGGTA+TGG + chr2_1:29561452-29561471 None:intergenic 45.0%
TACTGATCCGGATAACCCTT+AGG + chr2_1:29561457-29561476 None:intergenic 45.0%
! CCAGAAAGTGCATACTGATC+CGG + chr2_1:29561469-29561488 None:intergenic 45.0%
!! TCTCAGGAGTACTAGTTCCA+TGG - chr2_1:29561551-29561570 Msa0204420:CDS 45.0%
CTAGTTCCATGGCTGTATGT+TGG - chr2_1:29561562-29561581 Msa0204420:CDS 45.0%
GGTACTTCCTCGAACAAATC+AGG + chr2_1:29562111-29562130 None:intergenic 45.0%
TGCTGAACAGTGCGATATAC+GGG + chr2_1:29562321-29562340 None:intergenic 45.0%
GTGCTGAACAGTGCGATATA+CGG + chr2_1:29562322-29562341 None:intergenic 45.0%
TACCACTCTGGGTTCAATTG+TGG - chr2_1:29562375-29562394 Msa0204420:intron 45.0%
ACCACTCTGGGTTCAATTGT+GGG - chr2_1:29562376-29562395 Msa0204420:intron 45.0%
TGAATGTAGCTCCTGTCGAT+TGG - chr2_1:29562418-29562437 Msa0204420:CDS 45.0%
!! CATGAAGAGTTAGCTCTGCA+AGG + chr2_1:29562551-29562570 None:intergenic 45.0%
CTTGCAGAGCTAACTCTTCA+TGG - chr2_1:29562549-29562568 Msa0204420:CDS 45.0%
AGAAGCTACTGTGGGAAAGA+TGG - chr2_1:29562600-29562619 Msa0204420:CDS 45.0%
!!! GGTTACCCGTTTTTTCTGAC+AGG - chr2_1:29562750-29562769 Msa0204420:intron 45.0%
CCTTGCCTGTCAGAAAAAAC+GGG + chr2_1:29562758-29562777 None:intergenic 45.0%
CTGACAGGCAAGGATAAAGA+TGG - chr2_1:29562765-29562784 Msa0204420:intron 45.0%
GACAAGGGTCATGAAGAAAC+TGG - chr2_1:29563144-29563163 Msa0204420:intron 45.0%
CATGAAGAAACTGGTTGTGC+GGG - chr2_1:29563153-29563172 Msa0204420:intron 45.0%
ACTTGAGGTGCATCTGCAAA+TGG - chr2_1:29563497-29563516 Msa0204420:CDS 45.0%
CTGTTGTTCATGGGAAGCTA+TGG - chr2_1:29563655-29563674 Msa0204420:intron 45.0%
! TCCCACTACAGCATACCTTT+TGG + chr2_1:29563702-29563721 None:intergenic 45.0%
ACGAAGTTTGTGGCCATGAA+CGG + chr2_1:29563995-29564014 None:intergenic 45.0%
GTTTCCGTGAAAGTGACACT+TGG + chr2_1:29564187-29564206 None:intergenic 45.0%
TTCCCAACACTTATCTGCTG+AGG + chr2_1:29564209-29564228 None:intergenic 45.0%
ATCACAGAGCAAAGGAGTCT+AGG - chr2_1:29564256-29564275 Msa0204420:intron 45.0%
CCTGAACAATGGACGGTAAA+GGG + chr2_1:29564345-29564364 None:intergenic 45.0%
ACCTGAACAATGGACGGTAA+AGG + chr2_1:29564346-29564365 None:intergenic 45.0%
TACTCTGCACACTGATGACT+GGG + chr2_1:29564639-29564658 None:intergenic 45.0%
ATACTCTGCACACTGATGAC+TGG + chr2_1:29564640-29564659 None:intergenic 45.0%
GTCATCAGTGTGCAGAGTAT+TGG - chr2_1:29564640-29564659 Msa0204420:intron 45.0%
AAAGGTTTCCCTACATCTCC+AGG - chr2_1:29564669-29564688 Msa0204420:CDS 45.0%
TGACACTTCCTGGAGATGTA+GGG + chr2_1:29564680-29564699 None:intergenic 45.0%
ATGACACTTCCTGGAGATGT+AGG + chr2_1:29564681-29564700 None:intergenic 45.0%
CAGTTATCGATGACACTTCC+TGG + chr2_1:29564690-29564709 None:intergenic 45.0%
GATCAGGCTATAGGCAACAT+AGG - chr2_1:29564765-29564784 Msa0204420:intron 45.0%
CGTACTCAAAACAGCAGACC+TGG + chr2_1:29560381-29560400 None:intergenic 50.0%
! GGGATCCATCTGAAGCATGT+CGG - chr2_1:29560617-29560636 Msa0204420:intron 50.0%
ATAGGCCGACATGCTTCAGA+TGG + chr2_1:29560625-29560644 None:intergenic 50.0%
ATGCCATAAGGTTCGGCTAG+GGG + chr2_1:29560826-29560845 None:intergenic 50.0%
! GATTGTCCCTCCAGCTTGTT+GGG - chr2_1:29560852-29560871 Msa0204420:intron 50.0%
GGTTCCACCTTGCCTTCTTA+AGG - chr2_1:29560873-29560892 Msa0204420:intron 50.0%
CCTTCAATTTCCTCCTCGGA+GGG + chr2_1:29561234-29561253 None:intergenic 50.0%
GCAGCCAACAGATGAAGTTG+AGG - chr2_1:29561275-29561294 Msa0204420:intron 50.0%
! TATGGAGCGGACTTGGAAAC+TGG - chr2_1:29561394-29561413 Msa0204420:CDS 50.0%
CCGGATCAGTATGCACTTTC+TGG - chr2_1:29561466-29561485 Msa0204420:CDS 50.0%
AATAACTTCCCGCGACTACC+AGG - chr2_1:29561499-29561518 Msa0204420:CDS 50.0%
AGTACAGAACCTGGTAGTCG+CGG + chr2_1:29561511-29561530 None:intergenic 50.0%
CACATGCCAACATACAGCCA+TGG + chr2_1:29561571-29561590 None:intergenic 50.0%
! AGTCTGTTGGCACTTTTGCC+AGG - chr2_1:29561811-29561830 Msa0204420:CDS 50.0%
! AAAGCAGAAGCATGGCTACC+AGG + chr2_1:29562063-29562082 None:intergenic 50.0%
!! GCACTTGCCTGATTTGTTCG+AGG - chr2_1:29562101-29562120 Msa0204420:CDS 50.0%
TATCGCACTGTTCAGCACTC+TGG - chr2_1:29562324-29562343 Msa0204420:intron 50.0%
ATCGCACTGTTCAGCACTCT+GGG - chr2_1:29562325-29562344 Msa0204420:intron 50.0%
ACCCACAATTGAACCCAGAG+TGG + chr2_1:29562380-29562399 None:intergenic 50.0%
CCATGCGTTAACCAATCGAC+AGG + chr2_1:29562432-29562451 None:intergenic 50.0%
! CCTGTCGATTGGTTAACGCA+TGG - chr2_1:29562429-29562448 Msa0204420:CDS 50.0%
!!! CCCGTTTTTTCTGACAGGCA+AGG - chr2_1:29562755-29562774 Msa0204420:intron 50.0%
ACAAGAGGTGGATGGAGACA+AGG - chr2_1:29563128-29563147 Msa0204420:intron 50.0%
CAAGAGGTGGATGGAGACAA+GGG - chr2_1:29563129-29563148 Msa0204420:intron 50.0%
ACTTTCATTCGGCGCGCTAA+GGG + chr2_1:29563244-29563263 None:intergenic 50.0%
TACTTTCATTCGGCGCGCTA+AGG + chr2_1:29563245-29563264 None:intergenic 50.0%
CCCTTTACCGTCCATTGTTC+AGG - chr2_1:29564342-29564361 Msa0204420:intron 50.0%
ACTGGGATCTTGAGCTTCGA+TGG + chr2_1:29564622-29564641 None:intergenic 50.0%
CAGGCTATAGGCAACATAGG+AGG - chr2_1:29564768-29564787 Msa0204420:intron 50.0%
! CTGACGCACAATGTTCTGAG+TGG - chr2_1:29564877-29564896 Msa0204420:intron 50.0%
TGCCATAAGGTTCGGCTAGG+GGG + chr2_1:29560825-29560844 None:intergenic 55.0%
GGATTGTCCCTCCAGCTTGT+TGG - chr2_1:29560851-29560870 Msa0204420:intron 55.0%
GTGGAACCCAACAAGCTGGA+GGG + chr2_1:29560861-29560880 None:intergenic 55.0%
CAAGGTGGAACCCAACAAGC+TGG + chr2_1:29560865-29560884 None:intergenic 55.0%
CCCTCCGAGGAGGAAATTGA+AGG - chr2_1:29561231-29561250 Msa0204420:intron 55.0%
GCCTTCAATTTCCTCCTCGG+AGG + chr2_1:29561235-29561254 None:intergenic 55.0%
! GGTGTACTATGGAGCGGACT+TGG - chr2_1:29561387-29561406 Msa0204420:CDS 55.0%
GTACAGAACCTGGTAGTCGC+GGG + chr2_1:29561510-29561529 None:intergenic 55.0%
TCGCACTGTTCAGCACTCTG+GGG - chr2_1:29562326-29562345 Msa0204420:intron 55.0%
CTTCGGAATGGTTTCTGCCG+AGG - chr2_1:29563083-29563102 Msa0204420:intron 55.0%
! CATGCAAACCTCACTGGCCT+CGG + chr2_1:29563103-29563122 None:intergenic 55.0%
AAACTGGTTGTGCGGGAACC+AGG - chr2_1:29563160-29563179 Msa0204420:intron 55.0%
AACTGGTTGTGCGGGAACCA+GGG - chr2_1:29563161-29563180 Msa0204420:intron 55.0%
GGTGGAACCCAACAAGCTGG+AGG + chr2_1:29560862-29560881 None:intergenic 60.0%
!! AGGGCTCCCTTCGGTTTTGG+TGG + chr2_1:29561215-29561234 None:intergenic 60.0%
!! TTTCCGAGGGGGTACCACTC+TGG - chr2_1:29562363-29562382 Msa0204420:intron 60.0%
!! TTCCGAGGGGGTACCACTCT+GGG - chr2_1:29562364-29562383 Msa0204420:intron 60.0%
AACCCAGAGTGGTACCCCCT+CGG + chr2_1:29562369-29562388 None:intergenic 60.0%
TCGGCGCGCTAAGGGTTACA+AGG + chr2_1:29563236-29563255 None:intergenic 60.0%
CGCCCCCTAGCCGAACCTTA+TGG - chr2_1:29560820-29560839 Msa0204420:CDS 65.0%
! CGGAGGGCTCCCTTCGGTTT+TGG + chr2_1:29561218-29561237 None:intergenic 65.0%
AAACCGAAGGGAGCCCTCCG+AGG - chr2_1:29561218-29561237 Msa0204420:intron 65.0%
GGTTTCTGCCGAGGCCAGTG+AGG - chr2_1:29563092-29563111 Msa0204420:intron 65.0%
CCTCCTCGGAGGGCTCCCTT+CGG + chr2_1:29561224-29561243 None:intergenic 70.0%
CCGAAGGGAGCCCTCCGAGG+AGG - chr2_1:29561221-29561240 Msa0204420:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 29559718 29565316 29559718 ID=Msa0204420;Name=Msa0204420
chr2_1 mRNA 29559718 29565316 29559718 ID=Msa0204420-mRNA-1;Parent=Msa0204420;Name=Msa0204420-mRNA-1;_AED=0.06;_eAED=0.06;_QI=5|1|1|1|1|1|11|369|1003
chr2_1 exon 29559718 29560416 29559718 ID=Msa0204420-mRNA-1:exon:10613;Parent=Msa0204420-mRNA-1
chr2_1 exon 29560671 29560868 29560671 ID=Msa0204420-mRNA-1:exon:10612;Parent=Msa0204420-mRNA-1
chr2_1 exon 29561127 29561230 29561127 ID=Msa0204420-mRNA-1:exon:10611;Parent=Msa0204420-mRNA-1
chr2_1 exon 29561329 29562262 29561329 ID=Msa0204420-mRNA-1:exon:10610;Parent=Msa0204420-mRNA-1
chr2_1 exon 29562390 29562758 29562390 ID=Msa0204420-mRNA-1:exon:10609;Parent=Msa0204420-mRNA-1
chr2_1 exon 29562885 29563046 29562885 ID=Msa0204420-mRNA-1:exon:10608;Parent=Msa0204420-mRNA-1
chr2_1 exon 29563425 29563646 29563425 ID=Msa0204420-mRNA-1:exon:10607;Parent=Msa0204420-mRNA-1
chr2_1 exon 29563738 29564250 29563738 ID=Msa0204420-mRNA-1:exon:10606;Parent=Msa0204420-mRNA-1
chr2_1 exon 29564353 29564430 29564353 ID=Msa0204420-mRNA-1:exon:10605;Parent=Msa0204420-mRNA-1
chr2_1 exon 29564665 29564736 29564665 ID=Msa0204420-mRNA-1:exon:10604;Parent=Msa0204420-mRNA-1
chr2_1 exon 29565282 29565316 29565282 ID=Msa0204420-mRNA-1:exon:10603;Parent=Msa0204420-mRNA-1
chr2_1 five_prime_UTR 29565312 29565316 29565312 ID=Msa0204420-mRNA-1:five_prime_utr;Parent=Msa0204420-mRNA-1
chr2_1 CDS 29565282 29565311 29565282 ID=Msa0204420-mRNA-1:cds;Parent=Msa0204420-mRNA-1
chr2_1 CDS 29564665 29564736 29564665 ID=Msa0204420-mRNA-1:cds;Parent=Msa0204420-mRNA-1
chr2_1 CDS 29564353 29564430 29564353 ID=Msa0204420-mRNA-1:cds;Parent=Msa0204420-mRNA-1
chr2_1 CDS 29563738 29564250 29563738 ID=Msa0204420-mRNA-1:cds;Parent=Msa0204420-mRNA-1
chr2_1 CDS 29563425 29563646 29563425 ID=Msa0204420-mRNA-1:cds;Parent=Msa0204420-mRNA-1
chr2_1 CDS 29562885 29563046 29562885 ID=Msa0204420-mRNA-1:cds;Parent=Msa0204420-mRNA-1
chr2_1 CDS 29562390 29562758 29562390 ID=Msa0204420-mRNA-1:cds;Parent=Msa0204420-mRNA-1
chr2_1 CDS 29561329 29562262 29561329 ID=Msa0204420-mRNA-1:cds;Parent=Msa0204420-mRNA-1
chr2_1 CDS 29561127 29561230 29561127 ID=Msa0204420-mRNA-1:cds;Parent=Msa0204420-mRNA-1
chr2_1 CDS 29560671 29560868 29560671 ID=Msa0204420-mRNA-1:cds;Parent=Msa0204420-mRNA-1
chr2_1 CDS 29560087 29560416 29560087 ID=Msa0204420-mRNA-1:cds;Parent=Msa0204420-mRNA-1
chr2_1 three_prime_UTR 29559718 29560086 29559718 ID=Msa0204420-mRNA-1:three_prime_utr;Parent=Msa0204420-mRNA-1
Gene Sequence

>Msa0204420

ATGAAACAAATGGAATTGGATGCCAAAGAGGATAGTCCTCTTCAGCACAAGCCTAAAAAGGACAATGCACCTGAGTCTCCTGAAAGTCTTAGAAGTAAAAAGATATCAGCTAGATGGGATCCATCTGAAGCATGTCGGCCTATAATTGATGAAGCACCTGTTTTTCATCCAACTATTGAAGAGTTTGAAGATACACTGAGTTACATAGCGAAGATACGCCCCCTAGCCGAACCTTATGGCATATGTAGGATTGTCCCTCCAGCTTGTTGGGTTCCACCTTGCCTTCTTAAGGAGAAAGATATTTGGGAAAATGCCGAATTTTCCACCCGTATTCAGCAAATTGATTTACTTCAAAATAGAGAACCTATGAAGAAAAAAAGTAGGGGAAGGAAGCGAAAACGTAGAAGGAACTCCAAATCAGGAACATGTAGGAGAGCTTCCAAATCAGCTTCTGAAGCTAATAATGCATCTGAAGCTGATGAGAAATACGGATTTCAAGCAGGGTCCGACTTCACGTTTAAAGACTTTCAGCAATATGCTAGCTACTTTAAGGAATGCTACTTTGGGTTGAAAGATGCAAATGAAGATGGAAAAGTTAATGATAGTAACCACCAAAACCGAAGGGAGCCCTCCGAGGAGGAAATTGAAGGCGAATACTGGCGAATAGTAGAGCAGCCAACAGATGAAGTTGAGGTGTACTATGGAGCGGACTTGGAAACTGGAGTATTTGGAAGTGGTTTTTCTAAGGCATCATCCATACCTAAGGGTTATCCGGATCAGTATGCACTTTCTGGTTGGAATCTAAATAACTTCCCGCGACTACCAGGTTCTGTACTAAGTTTTGAAGGAAGTGACATCTCAGGAGTACTAGTTCCATGGCTGTATGTTGGCATGTGCTTTTCATCGTTTTGTTGGCATGTTGAGGATCATCACCTCTATTCGCTTAATTATCTACACTTTGGTGACTCAAAGATATGGTATGGAGTACCTGGTAGCCATGCTTCTGCTTTAGAAAATGCAATGAAGAAGCACTTGCCTGATTTGTTCGAGGAAGTACCAAATCTACTCAATGATCTGGTTACTCAGTTATCTCCATCAATTCTTAAAGATGAGGGAGTGCCCGTATATCGCACTGTTCAGCACTCTGGGGAATTTGTCATTACTTTTCCGAGGGGGTACCACTCTGGGTTCAATTGTGGGTTCAACTGTGCAGAAGCAGTGAATGTAGCTCCTGTCGATTGGTTAACGCATGGCCTAAATGCCGTTGAACTTTACAGTTTACAACGCCGTAAGACATCATTGTCACATGACAAGCTTTTATTTGGATCATCGCTGGAAGCTATACGAGCCCTTGCAGAGCTAACTCTTCATGGAAAGGAAAGTTCAAAAAATTTGAAATGGAGAAGCTACTGTGGGAAAGATGGAGTTCTTACTAAGGCATTTAAGGCAAGGATAAAGATGGAAGAAGAGAGGCTAAACTGTCTTCCAACTCATTTTAAGTCGCTGAAGATGGGCAACGACTTTGACTTGCATACAGAACGAGAATGCTTTTCTTGCTTCTATGACTTGTATCTATCTGCTGTCGGTTGCGAGTGCTCTCCTGATAAATATTCTTGTCTTAAGCATGCTTGTTTGTTCTGCTCATGCGAAATGGACAAAAGATTTGTTCTGCTTCGATATAATATGAATGAGCTAAACAAATTGCTTGAAGCACTAGAAGGAGATTCACTTGCTCTTGAGTTATGGGAAAGTAAAAACTTCGGAATGGTTTCTGCCGAGGCCAGTGAGGTTTGCATGAATAAACAAGAGGTGGATGGAGACAAGGGTCATGAAGAAACTGGTTGTGCGGGAACCAGGGATAAGTCAAATAGTCATGCTACATCAGAGCTAATGCAGTGTGAATCTCACCTTGTAACCCTTAGCGCGCCGAATGAAAGTATAGATAGTGATAATGACAATATGATAGTCATAGACAAAGATAAGGCGGATATTGCAGATAGCCATAACAAGGGTGATTCAGTAGAGGAAAAAGCATGTTGTTCAGAGACAAAAAAGGAACAAGACAACATGGAACTTGTTGTTGACCTATCACCTTCATCTTCTGTTGTGAAGACAGAAGTTTCATCATGCTCTAGGAATGTTCACAATTCTTGTACATTTGATGGTGGAAAACTTGAGGTGCATCTGCAAATGGATTCAGATTCAAGAAAGAAACCCAAAATTGTAGTTGAAAAAGTCACTGACACCACGAATGCGAGTATATCTTTGACACAAGAAAGCTTTCTAATGCAAATTTTTAGTACTTCTGTCAAGCCTATAAGTTTGGGATCTGTTGTTCATGGGAAGCTATGGTGCAATAAGCATGCAATATATCCAAAAGGATTCAAGAGCCGAGTTAATTTCTTTAGCATCATCGATCCAACAAGAATCTGTAGCTATGTTTCTGAAGTAATTGATGCTGGACTTCTAGGACCTCTTTTCAAGGTTACAATGGAGGAATGTCCAAGTGTCACTTTCACGGAAACCTCAGCAGATAAGTGTTGGGAATCAGTTCTTAAGAGACTACGTGACAAAATCACAGAGCAAAGGAGTCTAGGTGAACATGAACTTCCTTCCTTAGAGCTTCTGAAAAGCATTAACGGTTTTAGAATGTTCGGCTTCCCTTTACCGTCCATTGTTCAGGCCATCGAAGCTCAAGATCCCAGTCATCAGTGTGCAGAGTATTGGAATCACAAAGGTTTCCCTACATCTCCAGGAAGTGTCATCGATAACTGTAAAGTCCTATGTTGTTCAAGTAGCCCTACCAAAGTTTTTGGTATTAATTTGACTGATCAGGCTATAGGCAACATAGGAGGAAGTTATTATTCTCTTGAAGAGATGAAATCAATACTACAAAAGGCAAGTCTCGAAGAGCTAAGCTCATTACGCAAGTTTCTCATCTCTGACGCACAATGTTCTGAGTGGAGAATGACATTAACATCATTGATCGATGAGATTCAGAAAGCTTTGTAG
Protein sequence

>Msa0204420

MKQMELDAKEDSPLQHKPKKDNAPESPESLRSKKISARWDPSEACRPIIDEAPVFHPTIEEFEDTLSYIAKIRPLAEPYGICRIVPPACWVPPCLLKEKDIWENAEFSTRIQQIDLLQNREPMKKKSRGRKRKRRRNSKSGTCRRASKSASEANNASEADEKYGFQAGSDFTFKDFQQYASYFKECYFGLKDANEDGKVNDSNHQNRREPSEEEIEGEYWRIVEQPTDEVEVYYGADLETGVFGSGFSKASSIPKGYPDQYALSGWNLNNFPRLPGSVLSFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHFGDSKIWYGVPGSHASALENAMKKHLPDLFEEVPNLLNDLVTQLSPSILKDEGVPVYRTVQHSGEFVITFPRGYHSGFNCGFNCAEAVNVAPVDWLTHGLNAVELYSLQRRKTSLSHDKLLFGSSLEAIRALAELTLHGKESSKNLKWRSYCGKDGVLTKAFKARIKMEEERLNCLPTHFKSLKMGNDFDLHTERECFSCFYDLYLSAVGCECSPDKYSCLKHACLFCSCEMDKRFVLLRYNMNELNKLLEALEGDSLALELWESKNFGMVSAEASEVCMNKQEVDGDKGHEETGCAGTRDKSNSHATSELMQCESHLVTLSAPNESIDSDNDNMIVIDKDKADIADSHNKGDSVEEKACCSETKKEQDNMELVVDLSPSSSVVKTEVSSCSRNVHNSCTFDGGKLEVHLQMDSDSRKKPKIVVEKVTDTTNASISLTQESFLMQIFSTSVKPISLGSVVHGKLWCNKHAIYPKGFKSRVNFFSIIDPTRICSYVSEVIDAGLLGPLFKVTMEECPSVTFTETSADKCWESVLKRLRDKITEQRSLGEHELPSLELLKSINGFRMFGFPLPSIVQAIEAQDPSHQCAEYWNHKGFPTSPGSVIDNCKVLCCSSSPTKVFGINLTDQAIGNIGGSYYSLEEMKSILQKASLEELSSLRKFLISDAQCSEWRMTLTSLIDEIQKAL*