AlfalfaGEDB | Msa0204420

M. sativa cultivar zhongmu-4 / Msa0204420

KEGG: K11446
GO: GO:0000003 GO:0000976 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008214 GO:0008276 GO:0009314 GO:0009416 GO:0009555 GO:0009628 GO:0009648 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010154 GO:0010216 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032451 GO:0032452 GO:0032453 GO:0032501 GO:0032502 GO:0034641 GO:0034647 GO:0034720 GO:0034721 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0048229 GO:0048316 GO:0048519 GO:0048523 GO:0048573 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
PFAM: PF02375.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0204420	XP_013463743.1	95.713	1003	43	0	1	1003	1	1003	0.0	1900

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0204420	sp\|F4I6G4\|JMJ18_ARATH	64.202	595	196	6	4	589	6	592	0.0	743
Msa0204420	sp\|F4I6G4\|JMJ18_ARATH	53.631	179	73	4	766	942	648	818	6.04e-50	194

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0204420	A0A072V8U6	95.713	1003	43	0	1	1003	1	1003	0.0	1900

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TFs/TRs:

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Gene ID	Type	Classification
Msa0204420	TR	Jumonji

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0204420	MtrunA17_Chr2g0303101	95.713	1003	43	0	1	1003	1	1003	0.0	1900
Msa0204420	MtrunA17_Chr8g0380981	60.697	1033	337	15	34	1001	25	1053	0.0	1176
Msa0204420	MtrunA17_Chr1g0189211	58.520	581	227	6	27	598	125	700	0.0	689
Msa0204420	MtrunA17_Chr1g0189211	37.603	242	139	3	762	1002	998	1228	5.60e-40	160
Msa0204420	MtrunA17_Chr7g0261401	45.391	575	290	8	34	590	99	667	4.31e-159	490
Msa0204420	MtrunA17_Chr5g0397501	40.749	427	205	8	154	568	288	678	1.15e-86	305
Msa0204420	MtrunA17_Chr5g0397501	54.054	74	30	2	47	120	23	92	4.66e-14	77.0
Msa0204420	MtrunA17_Chr5g0410721	35.714	406	176	11	49	440	86	420	3.82e-59	218
Msa0204420	MtrunA17_Chr3g0116441	33.827	405	195	10	52	445	18	360	6.24e-56	212
Msa0204420	MtrunA17_Chr1g0164731	29.187	603	322	17	48	631	41	557	2.90e-54	199

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0204420	AT1G30810.3	64.202	595	196	6	4	589	6	592	0.0	743
Msa0204420	AT1G30810.3	53.631	179	73	4	766	942	648	818	6.14e-51	194
Msa0204420	AT1G30810.2	64.202	595	196	6	4	589	6	592	0.0	743
Msa0204420	AT1G30810.2	53.631	179	73	4	766	942	648	818	6.14e-51	194
Msa0204420	AT1G30810.1	64.202	595	196	6	4	589	6	592	0.0	743
Msa0204420	AT1G30810.1	53.631	179	73	4	766	942	648	818	6.14e-51	194
Msa0204420	AT4G20400.1	61.646	571	200	5	21	585	31	588	0.0	719
Msa0204420	AT4G20400.1	40.265	226	114	3	779	1000	743	951	4.51e-43	170
Msa0204420	AT2G34880.1	58.059	577	217	8	16	585	25	583	0.0	690
Msa0204420	AT2G34880.1	47.179	195	95	3	751	943	618	806	4.04e-46	179

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Find 220 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCGAAGGGAGCCCTCCG+AGG	0.611498	2_1:-29563794	Msa0204420:CDS
AAACCTCAGCAGATAAGTGT+TGG	0.523110	2_1:-29560809	Msa0204420:CDS
AAACTGGTTGTGCGGGAACC+AGG	0.420135	2_1:-29561852	Msa0204420:CDS
AAAGCAGAAGCATGGCTACC+AGG	0.533939	2_1:+29562952	None:intergenic
AAAGGTTTCCCTACATCTCC+AGG	0.510314	2_1:-29560343	Msa0204420:CDS
AAAGTCTTTAAACGTGAAGT+CGG	0.621637	2_1:+29563903	None:intergenic
AAATATCTTTCTCCTTAAGA+AGG	0.467623	2_1:+29564127	None:intergenic
AAATGCAGGGAAACTACACA+CGG	0.725422	2_1:-29559735	Msa0204420:three_prime_UTR
AAATTGCTTGAAGCACTAGA+AGG	0.484561	2_1:-29561988	Msa0204420:CDS
AACCTCAGCAGATAAGTGTT+GGG	0.527827	2_1:-29560808	Msa0204420:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTTGAAAATCTAACCTCTT+TGG	+	chr2_1:29559748-29559767	None:intergenic	30.0%
AGAGAAATCATGCATTGTTA+GGG	+	chr2_1:29559770-29559789	None:intergenic	30.0%
AAGAGAAATCATGCATTGTT+AGG	+	chr2_1:29559771-29559790	None:intergenic	30.0%
TAACATTGTATCTCTGTTTC+TGG	-	chr2_1:29559927-29559946	Msa0204420:three_prime_UTR	30.0%
TTCCTATTTGTTCCAAAGAA+CGG	+	chr2_1:29560431-29560450	None:intergenic	30.0%
TCAATAGTTGGATGAAAAAC+AGG	+	chr2_1:29560661-29560680	None:intergenic	30.0%
CCTATGAAGAAAAAAAGTAG+GGG	-	chr2_1:29560967-29560986	Msa0204420:intron	30.0%
AAAGTCTTTAAACGTGAAGT+CGG	+	chr2_1:29561112-29561131	None:intergenic	30.0%
TTGAAAGATGCAAATGAAGA+TGG	-	chr2_1:29561171-29561190	Msa0204420:CDS	30.0%
CTTATATTGTAGGTGTACTA+TGG	-	chr2_1:29561376-29561395	Msa0204420:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	29559718	29565316	29559718	ID=Msa0204420;Name=Msa0204420
chr2_1	mRNA	29559718	29565316	29559718	ID=Msa0204420-mRNA-1;Parent=Msa0204420;Name=Msa0204420-mRNA-1;_AED=0.06;_eAED=0.06;_QI=5\|1\|1\|1\|1\|1\|11\|369\|1003
chr2_1	exon	29559718	29560416	29559718	ID=Msa0204420-mRNA-1:exon:10613;Parent=Msa0204420-mRNA-1
chr2_1	exon	29560671	29560868	29560671	ID=Msa0204420-mRNA-1:exon:10612;Parent=Msa0204420-mRNA-1
chr2_1	exon	29561127	29561230	29561127	ID=Msa0204420-mRNA-1:exon:10611;Parent=Msa0204420-mRNA-1
chr2_1	exon	29561329	29562262	29561329	ID=Msa0204420-mRNA-1:exon:10610;Parent=Msa0204420-mRNA-1
chr2_1	exon	29562390	29562758	29562390	ID=Msa0204420-mRNA-1:exon:10609;Parent=Msa0204420-mRNA-1
chr2_1	exon	29562885	29563046	29562885	ID=Msa0204420-mRNA-1:exon:10608;Parent=Msa0204420-mRNA-1
chr2_1	exon	29563425	29563646	29563425	ID=Msa0204420-mRNA-1:exon:10607;Parent=Msa0204420-mRNA-1
chr2_1	exon	29563738	29564250	29563738	ID=Msa0204420-mRNA-1:exon:10606;Parent=Msa0204420-mRNA-1
chr2_1	exon	29564353	29564430	29564353	ID=Msa0204420-mRNA-1:exon:10605;Parent=Msa0204420-mRNA-1
chr2_1	exon	29564665	29564736	29564665	ID=Msa0204420-mRNA-1:exon:10604;Parent=Msa0204420-mRNA-1
chr2_1	exon	29565282	29565316	29565282	ID=Msa0204420-mRNA-1:exon:10603;Parent=Msa0204420-mRNA-1
chr2_1	five_prime_UTR	29565312	29565316	29565312	ID=Msa0204420-mRNA-1:five_prime_utr;Parent=Msa0204420-mRNA-1
chr2_1	CDS	29565282	29565311	29565282	ID=Msa0204420-mRNA-1:cds;Parent=Msa0204420-mRNA-1
chr2_1	CDS	29564665	29564736	29564665	ID=Msa0204420-mRNA-1:cds;Parent=Msa0204420-mRNA-1
chr2_1	CDS	29564353	29564430	29564353	ID=Msa0204420-mRNA-1:cds;Parent=Msa0204420-mRNA-1
chr2_1	CDS	29563738	29564250	29563738	ID=Msa0204420-mRNA-1:cds;Parent=Msa0204420-mRNA-1
chr2_1	CDS	29563425	29563646	29563425	ID=Msa0204420-mRNA-1:cds;Parent=Msa0204420-mRNA-1
chr2_1	CDS	29562885	29563046	29562885	ID=Msa0204420-mRNA-1:cds;Parent=Msa0204420-mRNA-1
chr2_1	CDS	29562390	29562758	29562390	ID=Msa0204420-mRNA-1:cds;Parent=Msa0204420-mRNA-1
chr2_1	CDS	29561329	29562262	29561329	ID=Msa0204420-mRNA-1:cds;Parent=Msa0204420-mRNA-1
chr2_1	CDS	29561127	29561230	29561127	ID=Msa0204420-mRNA-1:cds;Parent=Msa0204420-mRNA-1
chr2_1	CDS	29560671	29560868	29560671	ID=Msa0204420-mRNA-1:cds;Parent=Msa0204420-mRNA-1
chr2_1	CDS	29560087	29560416	29560087	ID=Msa0204420-mRNA-1:cds;Parent=Msa0204420-mRNA-1
chr2_1	three_prime_UTR	29559718	29560086	29559718	ID=Msa0204420-mRNA-1:three_prime_utr;Parent=Msa0204420-mRNA-1

Gene Sequence

>Msa0204420

ATGAAACAAATGGAATTGGATGCCAAAGAGGATAGTCCTCTTCAGCACAAGCCTAAAAAGGACAATGCACCTGAGTCTCCTGAAAGTCTTAGAAGTAAAAAGATATCAGCTAGATGGGATCCATCTGAAGCATGTCGGCCTATAATTGATGAAGCACCTGTTTTTCATCCAACTATTGAAGAGTTTGAAGATACACTGAGTTACATAGCGAAGATACGCCCCCTAGCCGAACCTTATGGCATATGTAGGATTGTCCCTCCAGCTTGTTGGGTTCCACCTTGCCTTCTTAAGGAGAAAGATATTTGGGAAAATGCCGAATTTTCCACCCGTATTCAGCAAATTGATTTACTTCAAAATAGAGAACCTATGAAGAAAAAAAGTAGGGGAAGGAAGCGAAAACGTAGAAGGAACTCCAAATCAGGAACATGTAGGAGAGCTTCCAAATCAGCTTCTGAAGCTAATAATGCATCTGAAGCTGATGAGAAATACGGATTTCAAGCAGGGTCCGACTTCACGTTTAAAGACTTTCAGCAATATGCTAGCTACTTTAAGGAATGCTACTTTGGGTTGAAAGATGCAAATGAAGATGGAAAAGTTAATGATAGTAACCACCAAAACCGAAGGGAGCCCTCCGAGGAGGAAATTGAAGGCGAATACTGGCGAATAGTAGAGCAGCCAACAGATGAAGTTGAGGTGTACTATGGAGCGGACTTGGAAACTGGAGTATTTGGAAGTGGTTTTTCTAAGGCATCATCCATACCTAAGGGTTATCCGGATCAGTATGCACTTTCTGGTTGGAATCTAAATAACTTCCCGCGACTACCAGGTTCTGTACTAAGTTTTGAAGGAAGTGACATCTCAGGAGTACTAGTTCCATGGCTGTATGTTGGCATGTGCTTTTCATCGTTTTGTTGGCATGTTGAGGATCATCACCTCTATTCGCTTAATTATCTACACTTTGGTGACTCAAAGATATGGTATGGAGTACCTGGTAGCCATGCTTCTGCTTTAGAAAATGCAATGAAGAAGCACTTGCCTGATTTGTTCGAGGAAGTACCAAATCTACTCAATGATCTGGTTACTCAGTTATCTCCATCAATTCTTAAAGATGAGGGAGTGCCCGTATATCGCACTGTTCAGCACTCTGGGGAATTTGTCATTACTTTTCCGAGGGGGTACCACTCTGGGTTCAATTGTGGGTTCAACTGTGCAGAAGCAGTGAATGTAGCTCCTGTCGATTGGTTAACGCATGGCCTAAATGCCGTTGAACTTTACAGTTTACAACGCCGTAAGACATCATTGTCACATGACAAGCTTTTATTTGGATCATCGCTGGAAGCTATACGAGCCCTTGCAGAGCTAACTCTTCATGGAAAGGAAAGTTCAAAAAATTTGAAATGGAGAAGCTACTGTGGGAAAGATGGAGTTCTTACTAAGGCATTTAAGGCAAGGATAAAGATGGAAGAAGAGAGGCTAAACTGTCTTCCAACTCATTTTAAGTCGCTGAAGATGGGCAACGACTTTGACTTGCATACAGAACGAGAATGCTTTTCTTGCTTCTATGACTTGTATCTATCTGCTGTCGGTTGCGAGTGCTCTCCTGATAAATATTCTTGTCTTAAGCATGCTTGTTTGTTCTGCTCATGCGAAATGGACAAAAGATTTGTTCTGCTTCGATATAATATGAATGAGCTAAACAAATTGCTTGAAGCACTAGAAGGAGATTCACTTGCTCTTGAGTTATGGGAAAGTAAAAACTTCGGAATGGTTTCTGCCGAGGCCAGTGAGGTTTGCATGAATAAACAAGAGGTGGATGGAGACAAGGGTCATGAAGAAACTGGTTGTGCGGGAACCAGGGATAAGTCAAATAGTCATGCTACATCAGAGCTAATGCAGTGTGAATCTCACCTTGTAACCCTTAGCGCGCCGAATGAAAGTATAGATAGTGATAATGACAATATGATAGTCATAGACAAAGATAAGGCGGATATTGCAGATAGCCATAACAAGGGTGATTCAGTAGAGGAAAAAGCATGTTGTTCAGAGACAAAAAAGGAACAAGACAACATGGAACTTGTTGTTGACCTATCACCTTCATCTTCTGTTGTGAAGACAGAAGTTTCATCATGCTCTAGGAATGTTCACAATTCTTGTACATTTGATGGTGGAAAACTTGAGGTGCATCTGCAAATGGATTCAGATTCAAGAAAGAAACCCAAAATTGTAGTTGAAAAAGTCACTGACACCACGAATGCGAGTATATCTTTGACACAAGAAAGCTTTCTAATGCAAATTTTTAGTACTTCTGTCAAGCCTATAAGTTTGGGATCTGTTGTTCATGGGAAGCTATGGTGCAATAAGCATGCAATATATCCAAAAGGATTCAAGAGCCGAGTTAATTTCTTTAGCATCATCGATCCAACAAGAATCTGTAGCTATGTTTCTGAAGTAATTGATGCTGGACTTCTAGGACCTCTTTTCAAGGTTACAATGGAGGAATGTCCAAGTGTCACTTTCACGGAAACCTCAGCAGATAAGTGTTGGGAATCAGTTCTTAAGAGACTACGTGACAAAATCACAGAGCAAAGGAGTCTAGGTGAACATGAACTTCCTTCCTTAGAGCTTCTGAAAAGCATTAACGGTTTTAGAATGTTCGGCTTCCCTTTACCGTCCATTGTTCAGGCCATCGAAGCTCAAGATCCCAGTCATCAGTGTGCAGAGTATTGGAATCACAAAGGTTTCCCTACATCTCCAGGAAGTGTCATCGATAACTGTAAAGTCCTATGTTGTTCAAGTAGCCCTACCAAAGTTTTTGGTATTAATTTGACTGATCAGGCTATAGGCAACATAGGAGGAAGTTATTATTCTCTTGAAGAGATGAAATCAATACTACAAAAGGCAAGTCTCGAAGAGCTAAGCTCATTACGCAAGTTTCTCATCTCTGACGCACAATGTTCTGAGTGGAGAATGACATTAACATCATTGATCGATGAGATTCAGAAAGCTTTGTAG

Protein sequence

>Msa0204420

MKQMELDAKEDSPLQHKPKKDNAPESPESLRSKKISARWDPSEACRPIIDEAPVFHPTIEEFEDTLSYIAKIRPLAEPYGICRIVPPACWVPPCLLKEKDIWENAEFSTRIQQIDLLQNREPMKKKSRGRKRKRRRNSKSGTCRRASKSASEANNASEADEKYGFQAGSDFTFKDFQQYASYFKECYFGLKDANEDGKVNDSNHQNRREPSEEEIEGEYWRIVEQPTDEVEVYYGADLETGVFGSGFSKASSIPKGYPDQYALSGWNLNNFPRLPGSVLSFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHFGDSKIWYGVPGSHASALENAMKKHLPDLFEEVPNLLNDLVTQLSPSILKDEGVPVYRTVQHSGEFVITFPRGYHSGFNCGFNCAEAVNVAPVDWLTHGLNAVELYSLQRRKTSLSHDKLLFGSSLEAIRALAELTLHGKESSKNLKWRSYCGKDGVLTKAFKARIKMEEERLNCLPTHFKSLKMGNDFDLHTERECFSCFYDLYLSAVGCECSPDKYSCLKHACLFCSCEMDKRFVLLRYNMNELNKLLEALEGDSLALELWESKNFGMVSAEASEVCMNKQEVDGDKGHEETGCAGTRDKSNSHATSELMQCESHLVTLSAPNESIDSDNDNMIVIDKDKADIADSHNKGDSVEEKACCSETKKEQDNMELVVDLSPSSSVVKTEVSSCSRNVHNSCTFDGGKLEVHLQMDSDSRKKPKIVVEKVTDTTNASISLTQESFLMQIFSTSVKPISLGSVVHGKLWCNKHAIYPKGFKSRVNFFSIIDPTRICSYVSEVIDAGLLGPLFKVTMEECPSVTFTETSADKCWESVLKRLRDKITEQRSLGEHELPSLELLKSINGFRMFGFPLPSIVQAIEAQDPSHQCAEYWNHKGFPTSPGSVIDNCKVLCCSSSPTKVFGINLTDQAIGNIGGSYYSLEEMKSILQKASLEELSSLRKFLISDAQCSEWRMTLTSLIDEIQKAL*