AlfalfaGEDB | Msa0207920

M. sativa cultivar zhongmu-4 / Msa0207920

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0207920	XP_039687084.1	84.426	122	17	1	1	120	1	122	6.99e-69	213

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0207920	G7INX6	84.426	122	17	1	1	120	1	122	3.34e-69	213

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TFs/TRs:

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Gene ID	Type	Classification
Msa0207920	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0207920	MtrunA17_Chr2g0281511	84.426	122	17	1	1	120	1	122	6.43e-73	213
Msa0207920	MtrunA17_Chr2g0309121	81.148	122	20	2	1	120	1	121	1.41e-67	199
Msa0207920	MtrunA17_Chr3g0081891	81.250	80	13	1	1	78	1	80	1.73e-42	134
Msa0207920	MtrunA17_Chr7g0276661	35.878	131	62	5	7	117	38	166	5.90e-20	80.1
Msa0207920	MtrunA17_Chr5g0430431	48.214	56	29	0	59	114	199	254	3.27e-13	63.9
Msa0207920	MtrunA17_Chr0c01g0489371	39.560	91	51	2	22	108	224	314	5.65e-13	63.5
Msa0207920	MtrunA17_Chr8g0372431	27.835	97	68	1	24	118	6	102	8.54e-13	60.1
Msa0207920	MtrunA17_Chr8g0356961	36.170	94	56	2	19	108	72	165	3.02e-12	60.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 21 sgRNAs with CRISPR-Local

Find 25 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCCGATGTTCATTAT+TGG	0.199581	2_1:-40944939	Msa0207920:CDS
AAGTTAATGGTGCTGAATTA+GGG	0.367629	2_1:-40944969	Msa0207920:CDS
ACGGTAGCATACATCCTATT+AGG	0.440754	2_1:+40944560	None:intergenic
AGAAATACATAGGGAGAGGA+TGG	0.573439	2_1:-40944649	Msa0207920:CDS
AGCATGCATCAGAAATACAT+AGG	0.564126	2_1:-40944659	Msa0207920:CDS
ATACTTCCAATAATGAACAT+CGG	0.646998	2_1:+40944933	None:intergenic
CAGTCAATAATCCTCCTAAT+AGG	0.398760	2_1:-40944574	Msa0207920:CDS
CATCAGAAATACATAGGGAG+AGG	0.580360	2_1:-40944653	Msa0207920:CDS
CCATTCTCAGCAATACGTCG+AGG	0.710417	2_1:+40944767	None:intergenic
CCTCGACGTATTGCTGAGAA+TGG	0.434646	2_1:-40944767	Msa0207920:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACCAGTTTCTTCATCAAAA+GGG	+	chr2_1:40944818-40944837	None:intergenic	30.0%
TTACCAGTTTCTTCATCAAA+AGG	+	chr2_1:40944819-40944838	None:intergenic	30.0%
GAGATTGGAGTTGAAGTTAA+TGG	-	chr2_1:40944550-40944569	Msa0207920:CDS	35.0%
TGGAAACAATGTTTGGTTAG+TGG	-	chr2_1:40944645-40944664	Msa0207920:CDS	35.0%
AGCATGCATCAGAAATACAT+AGG	-	chr2_1:40944873-40944892	Msa0207920:intron	35.0%
GCATGCATCAGAAATACATA+GGG	-	chr2_1:40944874-40944893	Msa0207920:intron	35.0%
CAGTCAATAATCCTCCTAAT+AGG	-	chr2_1:40944958-40944977	Msa0207920:CDS	35.0%
CATCAGAAATACATAGGGAG+AGG	-	chr2_1:40944879-40944898	Msa0207920:intron	40.0%
AGAAATACATAGGGAGAGGA+TGG	-	chr2_1:40944883-40944902	Msa0207920:intron	40.0%
GTAGCATACATCCTATTAGG+AGG	+	chr2_1:40944972-40944991	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	40944544	40945010	40944544	ID=Msa0207920;Name=Msa0207920
chr2_1	mRNA	40944544	40945010	40944544	ID=Msa0207920-mRNA-1;Parent=Msa0207920;Name=Msa0207920-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|1\|1\|1\|2\|0\|120
chr2_1	exon	40944900	40945010	40944900	ID=Msa0207920-mRNA-1:exon:12609;Parent=Msa0207920-mRNA-1
chr2_1	exon	40944544	40944795	40944544	ID=Msa0207920-mRNA-1:exon:12608;Parent=Msa0207920-mRNA-1
chr2_1	CDS	40944900	40945010	40944900	ID=Msa0207920-mRNA-1:cds;Parent=Msa0207920-mRNA-1
chr2_1	CDS	40944544	40944795	40944544	ID=Msa0207920-mRNA-1:cds;Parent=Msa0207920-mRNA-1

Gene Sequence	>Msa0207920 ATGAATGAGATTGGAGTTGAAGTTAATGGTGCTGAATTAGGGAATCTTCAAAATTCCGATGTTCATTATTGGAAGTATAATGTTACTGCTTCTATTTTGGATGGAAACAATAATTTTCCTCGACGTATTGCTGAGAATGGTTTGTATATCAATCAATCTAAAATTCTCCCTTTTGATGAAGAAACTGGTAAATCTTATGACTGTGATGTTCACACTGCGTCAAGAAGCATGCATCAGAAATACATAGGGAGAGGATGGTACGACTTTGTTCTTGAAAAGTGCCTAAAAGTTGGTGACGTTATTTTGTTCACAGTCAATAATCCTCCTAATAGGATGTATGCTACCGTCGTTAACTGGGACTGA
Protein sequence	>Msa0207920 MNEIGVEVNGAELGNLQNSDVHYWKYNVTASILDGNNNFPRRIAENGLYINQSKILPFDEETGKSYDCDVHTASRSMHQKYIGRGWYDFVLEKCLKVGDVILFTVNNPPNRMYATVVNWD*