Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208880 | KEH42071.1 | 90.234 | 256 | 13 | 7 | 6 | 255 | 238 | 487 | 1.32e-150 | 439 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208880 | sp|Q9SA82|BH052_ARATH | 36.564 | 227 | 125 | 6 | 36 | 248 | 41 | 262 | 2.51e-28 | 111 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208880 | A0A072VKB3 | 90.234 | 256 | 13 | 7 | 6 | 255 | 238 | 487 | 6.32e-151 | 439 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0208880 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208880 | MtrunA17_Chr2g0311101 | 88.980 | 245 | 22 | 3 | 16 | 255 | 66 | 310 | 2.20e-142 | 401 |
| Msa0208880 | MtrunA17_Chr1g0179061 | 87.027 | 185 | 13 | 6 | 6 | 184 | 61 | 240 | 4.56e-105 | 305 |
| Msa0208880 | MtrunA17_Chr8g0384141 | 58.491 | 53 | 22 | 0 | 125 | 177 | 125 | 177 | 5.89e-13 | 67.0 |
| Msa0208880 | MtrunA17_Chr3g0134001 | 58.491 | 53 | 22 | 0 | 125 | 177 | 182 | 234 | 1.86e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208880 | AT1G30670.1 | 36.564 | 227 | 125 | 6 | 36 | 248 | 41 | 262 | 2.56e-29 | 111 |
| Msa0208880 | AT2G34820.1 | 40.084 | 237 | 105 | 8 | 36 | 248 | 66 | 289 | 2.80e-27 | 107 |
| Msa0208880 | AT3G21330.1 | 60.377 | 53 | 21 | 0 | 125 | 177 | 280 | 332 | 3.17e-13 | 68.9 |
| Msa0208880 | AT5G01305.1 | 50.000 | 58 | 29 | 0 | 125 | 182 | 48 | 105 | 2.20e-12 | 63.9 |
| Msa0208880 | AT4G00120.1 | 52.830 | 53 | 25 | 0 | 125 | 177 | 123 | 175 | 3.01e-11 | 61.6 |
Find 40 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATTATGATTGCTCAATT+TGG | 0.191234 | 2_1:+45234770 | None:intergenic |
| AGTTGGAATGCTTCAACTTA+TGG | 0.195386 | 2_1:-45235679 | Msa0208880:CDS |
| ATCTCTGCTGTGTTCATCTT+TGG | 0.238213 | 2_1:+45235744 | None:intergenic |
| AATTTGGTGACAAACTCTTT+TGG | 0.289383 | 2_1:+45234786 | None:intergenic |
| CCTCATAGTATAGCAGCTTT+TGG | 0.317037 | 2_1:+45236006 | None:intergenic |
| TACAATTTCTCTTGAACAAA+TGG | 0.348402 | 2_1:+45234831 | None:intergenic |
| ATCAAAACCTACCATCCTTA+AGG | 0.361760 | 2_1:-45234742 | Msa0208880:CDS |
| AAATAACACTATTCTTGCTT+TGG | 0.365183 | 2_1:+45234681 | None:intergenic |
| TCAAAGGAAGCAAAAGGGTT+AGG | 0.369513 | 2_1:+45235912 | None:intergenic |
| TTGATTATTTCAGGAAGAAA+AGG | 0.418378 | 2_1:-45234895 | Msa0208880:intron |
| GAGCTAGGGAAGTTGGTTCC+TGG | 0.426916 | 2_1:-45235771 | Msa0208880:CDS |
| CAAGCTGTTTCAGACCCTTA+AGG | 0.427556 | 2_1:+45234727 | None:intergenic |
| GACACAAGAGCTAGGGAAGT+TGG | 0.431491 | 2_1:-45235778 | Msa0208880:CDS |
| AAAATGAAATCTTCCTCAGT+TGG | 0.434948 | 2_1:+45236059 | None:intergenic |
| TCAAAACCTACCATCCTTAA+GGG | 0.456430 | 2_1:-45234741 | Msa0208880:CDS |
| AAGGGTCTGAAACAGCTTGT+TGG | 0.460418 | 2_1:-45234723 | Msa0208880:CDS |
| CAAAGGAAGCAAAAGGGTTA+GGG | 0.461232 | 2_1:+45235913 | None:intergenic |
| TCTGTCTCAAAGGAAGCAAA+AGG | 0.462646 | 2_1:+45235906 | None:intergenic |
| TTGTGTAGATCTTCACTTGG+AGG | 0.465635 | 2_1:+45234867 | None:intergenic |
| AAATGAAATCTTCCTCAGTT+GGG | 0.470627 | 2_1:+45236060 | None:intergenic |
| GTTCAATGTGAGAAGAAAGT+TGG | 0.488552 | 2_1:-45235864 | Msa0208880:CDS |
| TGTAGATCTTCACTTGGAGG+AGG | 0.494574 | 2_1:+45234870 | None:intergenic |
| GTGTTCATCTTTGGTCCACC+AGG | 0.499817 | 2_1:+45235753 | None:intergenic |
| AGAGTATCGCGGCTCGAGAA+AGG | 0.514420 | 2_1:-45235821 | Msa0208880:CDS |
| ACTGAGAAGACACAAGAGCT+AGG | 0.516284 | 2_1:-45235786 | Msa0208880:CDS |
| CCAAAAGCTGCTATACTATG+AGG | 0.553268 | 2_1:-45236006 | Msa0208880:CDS |
| AGTTTGTGTAGATCTTCACT+TGG | 0.558027 | 2_1:+45234864 | None:intergenic |
| TCGCGGCTCGAGAAAGGAGA+AGG | 0.564993 | 2_1:-45235815 | Msa0208880:CDS |
| GTGAGAAGAAAGTTGGTGAA+AGG | 0.566992 | 2_1:-45235857 | Msa0208880:CDS |
| AAGTTTCTTCAAGCTCAAGT+TGG | 0.567049 | 2_1:-45235696 | Msa0208880:CDS |
| GAGTTCAAAAGCTCTTGTTG+TGG | 0.567814 | 2_1:+45235969 | None:intergenic |
| ACTTATGGAAACATTTAGCA+AGG | 0.569731 | 2_1:-45235664 | Msa0208880:intron |
| TTCAGACCCTTAAGGATGGT+AGG | 0.578594 | 2_1:+45234735 | None:intergenic |
| CTGAGAAGACACAAGAGCTA+GGG | 0.585998 | 2_1:-45235785 | Msa0208880:CDS |
| CTGTCTCAAAGGAAGCAAAA+GGG | 0.598011 | 2_1:+45235907 | None:intergenic |
| CTAGGGAAGTTGGTTCCTGG+TGG | 0.615915 | 2_1:-45235768 | Msa0208880:CDS |
| CTGTTTCAGACCCTTAAGGA+TGG | 0.616344 | 2_1:+45234731 | None:intergenic |
| AGTAGTTGTTGATCTTGACA+AGG | 0.634276 | 2_1:+45236140 | None:intergenic |
| GTAGTTGTTGATCTTGACAA+GGG | 0.670997 | 2_1:+45236141 | None:intergenic |
| TATCTCGTCGCAGAGTATCG+CGG | 0.698927 | 2_1:-45235832 | Msa0208880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTTTGTAAATATCTAAAA+TGG | - | chr2_1:45235420-45235439 | Msa0208880:intron | 15.0% |
| !!! | CACTATTAATTTTATTTTCT+AGG | + | chr2_1:45235870-45235889 | None:intergenic | 15.0% |
| !! | ATCTTTGTAAATATCTAAAA+TGG | - | chr2_1:45235420-45235439 | Msa0208880:intron | 15.0% |
| !!! | CACTATTAATTTTATTTTCT+AGG | + | chr2_1:45235870-45235889 | None:intergenic | 15.0% |
| !! | TCATTTGAGTAAAAACAATT+AGG | + | chr2_1:45234716-45234735 | None:intergenic | 20.0% |
| !! | ACTAACTAAATCTACAATAA+TGG | + | chr2_1:45235455-45235474 | None:intergenic | 20.0% |
| !!! | AATATTTTCAGAGTAAAAGT+AGG | + | chr2_1:45235550-45235569 | None:intergenic | 20.0% |
| !!! | CTTTTACTCTGAAAATATTT+AGG | - | chr2_1:45235551-45235570 | Msa0208880:intron | 20.0% |
| !! | GAATATTTAAAAACAAAGAG+TGG | + | chr2_1:45235760-45235779 | None:intergenic | 20.0% |
| !! | TTATTGTATAAAGTTACACT+AGG | + | chr2_1:45235917-45235936 | None:intergenic | 20.0% |
| !!! | ATATGATCATTGATTATTTC+AGG | - | chr2_1:45235979-45235998 | Msa0208880:CDS | 20.0% |
| !! | TCATTTGAGTAAAAACAATT+AGG | + | chr2_1:45234716-45234735 | None:intergenic | 20.0% |
| !! | ACTAACTAAATCTACAATAA+TGG | + | chr2_1:45235455-45235474 | None:intergenic | 20.0% |
| !!! | AATATTTTCAGAGTAAAAGT+AGG | + | chr2_1:45235550-45235569 | None:intergenic | 20.0% |
| !!! | CTTTTACTCTGAAAATATTT+AGG | - | chr2_1:45235551-45235570 | Msa0208880:intron | 20.0% |
| !! | GAATATTTAAAAACAAAGAG+TGG | + | chr2_1:45235760-45235779 | None:intergenic | 20.0% |
| !! | TTATTGTATAAAGTTACACT+AGG | + | chr2_1:45235917-45235936 | None:intergenic | 20.0% |
| !!! | ATATGATCATTGATTATTTC+AGG | - | chr2_1:45235979-45235998 | Msa0208880:CDS | 20.0% |
| ! | AAACTCATCCACAAAAAAAT+TGG | + | chr2_1:45234942-45234961 | None:intergenic | 25.0% |
| !! | TGAACAACATCAACAATTTT+TGG | + | chr2_1:45235004-45235023 | None:intergenic | 25.0% |
| !! | TTTTATCAACATAAGACCTA+AGG | + | chr2_1:45235356-45235375 | None:intergenic | 25.0% |
| !!! | CAATAAACAAGAGAGTATTT+AGG | - | chr2_1:45235685-45235704 | Msa0208880:CDS | 25.0% |
| ! | TTAGGAACAACAATTGTATA+TGG | - | chr2_1:45235703-45235722 | Msa0208880:CDS | 25.0% |
| ! | TTGATTATTTCAGGAAGAAA+AGG | - | chr2_1:45235988-45236007 | Msa0208880:CDS | 25.0% |
| ! | TACAATTTCTCTTGAACAAA+TGG | + | chr2_1:45236055-45236074 | None:intergenic | 25.0% |
| ! | ATCATTATGATTGCTCAATT+TGG | + | chr2_1:45236116-45236135 | None:intergenic | 25.0% |
| ! | AAACTCATCCACAAAAAAAT+TGG | + | chr2_1:45234942-45234961 | None:intergenic | 25.0% |
| !! | TGAACAACATCAACAATTTT+TGG | + | chr2_1:45235004-45235023 | None:intergenic | 25.0% |
| !! | TTTTATCAACATAAGACCTA+AGG | + | chr2_1:45235356-45235375 | None:intergenic | 25.0% |
| !!! | CAATAAACAAGAGAGTATTT+AGG | - | chr2_1:45235685-45235704 | Msa0208880:CDS | 25.0% |
| ! | TTAGGAACAACAATTGTATA+TGG | - | chr2_1:45235703-45235722 | Msa0208880:CDS | 25.0% |
| ! | TTGATTATTTCAGGAAGAAA+AGG | - | chr2_1:45235988-45236007 | Msa0208880:CDS | 25.0% |
| ! | TACAATTTCTCTTGAACAAA+TGG | + | chr2_1:45236055-45236074 | None:intergenic | 25.0% |
| ! | ATCATTATGATTGCTCAATT+TGG | + | chr2_1:45236116-45236135 | None:intergenic | 25.0% |
| !!! | ATCGTTTTGAGAAGAAAAAG+TGG | + | chr2_1:45234777-45234796 | None:intergenic | 30.0% |
| !! | ACTTTTTCTTCTCAAAACGA+TGG | - | chr2_1:45234776-45234795 | Msa0208880:CDS | 30.0% |
| AAATGAAATCTTCCTCAGTT+GGG | + | chr2_1:45234826-45234845 | None:intergenic | 30.0% | |
| AAAATGAAATCTTCCTCAGT+TGG | + | chr2_1:45234827-45234846 | None:intergenic | 30.0% | |
| !!! | GAACTCAACCAATTTTTTTG+TGG | - | chr2_1:45234931-45234950 | Msa0208880:intron | 30.0% |
| !!! | AATTTTTGGTTCTGTCTCAA+AGG | + | chr2_1:45234990-45235009 | None:intergenic | 30.0% |
| ACTTATGGAAACATTTAGCA+AGG | - | chr2_1:45235219-45235238 | Msa0208880:intron | 30.0% | |
| ! | TATTTAGTTTCCCAAACACT+TGG | - | chr2_1:45235802-45235821 | Msa0208880:CDS | 30.0% |
| TAATATCCTTCCAAGTGTTT+GGG | + | chr2_1:45235815-45235834 | None:intergenic | 30.0% | |
| TTAATATCCTTCCAAGTGTT+TGG | + | chr2_1:45235816-45235835 | None:intergenic | 30.0% | |
| !! | AATTTGGTGACAAACTCTTT+TGG | + | chr2_1:45236100-45236119 | None:intergenic | 30.0% |
| !!! | ATCGTTTTGAGAAGAAAAAG+TGG | + | chr2_1:45234777-45234796 | None:intergenic | 30.0% |
| !! | ACTTTTTCTTCTCAAAACGA+TGG | - | chr2_1:45234776-45234795 | Msa0208880:CDS | 30.0% |
| AAATGAAATCTTCCTCAGTT+GGG | + | chr2_1:45234826-45234845 | None:intergenic | 30.0% | |
| AAAATGAAATCTTCCTCAGT+TGG | + | chr2_1:45234827-45234846 | None:intergenic | 30.0% | |
| !!! | GAACTCAACCAATTTTTTTG+TGG | - | chr2_1:45234931-45234950 | Msa0208880:intron | 30.0% |
| !!! | AATTTTTGGTTCTGTCTCAA+AGG | + | chr2_1:45234990-45235009 | None:intergenic | 30.0% |
| ACTTATGGAAACATTTAGCA+AGG | - | chr2_1:45235219-45235238 | Msa0208880:intron | 30.0% | |
| ! | TATTTAGTTTCCCAAACACT+TGG | - | chr2_1:45235802-45235821 | Msa0208880:CDS | 30.0% |
| TAATATCCTTCCAAGTGTTT+GGG | + | chr2_1:45235815-45235834 | None:intergenic | 30.0% | |
| TTAATATCCTTCCAAGTGTT+TGG | + | chr2_1:45235816-45235835 | None:intergenic | 30.0% | |
| !! | AATTTGGTGACAAACTCTTT+TGG | + | chr2_1:45236100-45236119 | None:intergenic | 30.0% |
| GTAGTTGTTGATCTTGACAA+GGG | + | chr2_1:45234745-45234764 | None:intergenic | 35.0% | |
| AGTAGTTGTTGATCTTGACA+AGG | + | chr2_1:45234746-45234765 | None:intergenic | 35.0% | |
| ! | GAATGAAATTTTCCCAACTG+AGG | - | chr2_1:45234811-45234830 | Msa0208880:CDS | 35.0% |
| GTTCAATGTGAGAAGAAAGT+TGG | - | chr2_1:45235019-45235038 | Msa0208880:intron | 35.0% | |
| AAGTTTCTTCAAGCTCAAGT+TGG | - | chr2_1:45235187-45235206 | Msa0208880:intron | 35.0% | |
| AGTTGGAATGCTTCAACTTA+TGG | - | chr2_1:45235204-45235223 | Msa0208880:intron | 35.0% | |
| ATCAACATAAGACCTAAGGA+AGG | + | chr2_1:45235352-45235371 | None:intergenic | 35.0% | |
| ! | TTTTCAGAGTAAAAGTAGGC+AGG | + | chr2_1:45235546-45235565 | None:intergenic | 35.0% |
| CGGTTAATAAGAAGAGGAAA+TGG | - | chr2_1:45235661-45235680 | Msa0208880:intron | 35.0% | |
| CAATTGTATATGGAATGAGC+TGG | - | chr2_1:45235713-45235732 | Msa0208880:CDS | 35.0% | |
| AGTTTGTGTAGATCTTCACT+TGG | + | chr2_1:45236022-45236041 | None:intergenic | 35.0% | |
| ATCAAAACCTACCATCCTTA+AGG | - | chr2_1:45236141-45236160 | Msa0208880:CDS | 35.0% | |
| TCAAAACCTACCATCCTTAA+GGG | - | chr2_1:45236142-45236161 | Msa0208880:CDS | 35.0% | |
| GTAGTTGTTGATCTTGACAA+GGG | + | chr2_1:45234745-45234764 | None:intergenic | 35.0% | |
| AGTAGTTGTTGATCTTGACA+AGG | + | chr2_1:45234746-45234765 | None:intergenic | 35.0% | |
| ! | GAATGAAATTTTCCCAACTG+AGG | - | chr2_1:45234811-45234830 | Msa0208880:CDS | 35.0% |
| GTTCAATGTGAGAAGAAAGT+TGG | - | chr2_1:45235019-45235038 | Msa0208880:intron | 35.0% | |
| AAGTTTCTTCAAGCTCAAGT+TGG | - | chr2_1:45235187-45235206 | Msa0208880:intron | 35.0% | |
| AGTTGGAATGCTTCAACTTA+TGG | - | chr2_1:45235204-45235223 | Msa0208880:intron | 35.0% | |
| ATCAACATAAGACCTAAGGA+AGG | + | chr2_1:45235352-45235371 | None:intergenic | 35.0% | |
| ! | TTTTCAGAGTAAAAGTAGGC+AGG | + | chr2_1:45235546-45235565 | None:intergenic | 35.0% |
| CGGTTAATAAGAAGAGGAAA+TGG | - | chr2_1:45235661-45235680 | Msa0208880:intron | 35.0% | |
| CAATTGTATATGGAATGAGC+TGG | - | chr2_1:45235713-45235732 | Msa0208880:CDS | 35.0% | |
| AGTTTGTGTAGATCTTCACT+TGG | + | chr2_1:45236022-45236041 | None:intergenic | 35.0% | |
| ATCAAAACCTACCATCCTTA+AGG | - | chr2_1:45236141-45236160 | Msa0208880:CDS | 35.0% | |
| TCAAAACCTACCATCCTTAA+GGG | - | chr2_1:45236142-45236161 | Msa0208880:CDS | 35.0% | |
| ! | TATAGCAGCTTTTGGCGTTT+TGG | + | chr2_1:45234872-45234891 | None:intergenic | 40.0% |
| ! | CCTCATAGTATAGCAGCTTT+TGG | + | chr2_1:45234880-45234899 | None:intergenic | 40.0% |
| CCAAAAGCTGCTATACTATG+AGG | - | chr2_1:45234877-45234896 | Msa0208880:CDS | 40.0% | |
| GAGTTCAAAAGCTCTTGTTG+TGG | + | chr2_1:45234917-45234936 | None:intergenic | 40.0% | |
| CAAAGGAAGCAAAAGGGTTA+GGG | + | chr2_1:45234973-45234992 | None:intergenic | 40.0% | |
| TCAAAGGAAGCAAAAGGGTT+AGG | + | chr2_1:45234974-45234993 | None:intergenic | 40.0% | |
| CTGTCTCAAAGGAAGCAAAA+GGG | + | chr2_1:45234979-45234998 | None:intergenic | 40.0% | |
| TCTGTCTCAAAGGAAGCAAA+AGG | + | chr2_1:45234980-45234999 | None:intergenic | 40.0% | |
| !! | GTGAGAAGAAAGTTGGTGAA+AGG | - | chr2_1:45235026-45235045 | Msa0208880:intron | 40.0% |
| ATCTCTGCTGTGTTCATCTT+TGG | + | chr2_1:45235142-45235161 | None:intergenic | 40.0% | |
| ! | ACTGTTTTGTGTCCTTCCTT+AGG | - | chr2_1:45235337-45235356 | Msa0208880:intron | 40.0% |
| GGGAAACGGTTAATAAGAAG+AGG | - | chr2_1:45235655-45235674 | Msa0208880:intron | 40.0% | |
| TAGTTTCCCAAACACTTGGA+AGG | - | chr2_1:45235806-45235825 | Msa0208880:CDS | 40.0% | |
| !! | TAGGTGCTGAATCATGTCAT+GGG | + | chr2_1:45235851-45235870 | None:intergenic | 40.0% |
| TTGTGTAGATCTTCACTTGG+AGG | + | chr2_1:45236019-45236038 | None:intergenic | 40.0% | |
| ! | TATAGCAGCTTTTGGCGTTT+TGG | + | chr2_1:45234872-45234891 | None:intergenic | 40.0% |
| ! | CCTCATAGTATAGCAGCTTT+TGG | + | chr2_1:45234880-45234899 | None:intergenic | 40.0% |
| CCAAAAGCTGCTATACTATG+AGG | - | chr2_1:45234877-45234896 | Msa0208880:CDS | 40.0% | |
| GAGTTCAAAAGCTCTTGTTG+TGG | + | chr2_1:45234917-45234936 | None:intergenic | 40.0% | |
| CAAAGGAAGCAAAAGGGTTA+GGG | + | chr2_1:45234973-45234992 | None:intergenic | 40.0% | |
| TCAAAGGAAGCAAAAGGGTT+AGG | + | chr2_1:45234974-45234993 | None:intergenic | 40.0% | |
| CTGTCTCAAAGGAAGCAAAA+GGG | + | chr2_1:45234979-45234998 | None:intergenic | 40.0% | |
| TCTGTCTCAAAGGAAGCAAA+AGG | + | chr2_1:45234980-45234999 | None:intergenic | 40.0% | |
| !! | GTGAGAAGAAAGTTGGTGAA+AGG | - | chr2_1:45235026-45235045 | Msa0208880:intron | 40.0% |
| ATCTCTGCTGTGTTCATCTT+TGG | + | chr2_1:45235142-45235161 | None:intergenic | 40.0% | |
| ! | ACTGTTTTGTGTCCTTCCTT+AGG | - | chr2_1:45235337-45235356 | Msa0208880:intron | 40.0% |
| GGGAAACGGTTAATAAGAAG+AGG | - | chr2_1:45235655-45235674 | Msa0208880:intron | 40.0% | |
| TAGTTTCCCAAACACTTGGA+AGG | - | chr2_1:45235806-45235825 | Msa0208880:CDS | 40.0% | |
| !! | TAGGTGCTGAATCATGTCAT+GGG | + | chr2_1:45235851-45235870 | None:intergenic | 40.0% |
| TTGTGTAGATCTTCACTTGG+AGG | + | chr2_1:45236019-45236038 | None:intergenic | 40.0% | |
| !! | AGCTTTTGGCGTTTTGGACA+TGG | + | chr2_1:45234866-45234885 | None:intergenic | 45.0% |
| ACTGAGAAGACACAAGAGCT+AGG | - | chr2_1:45235097-45235116 | Msa0208880:intron | 45.0% | |
| CTGAGAAGACACAAGAGCTA+GGG | - | chr2_1:45235098-45235117 | Msa0208880:intron | 45.0% | |
| TGAGCTGGCTATGTTCAACA+AGG | - | chr2_1:45235728-45235747 | Msa0208880:CDS | 45.0% | |
| !! | CTAGGTGCTGAATCATGTCA+TGG | + | chr2_1:45235852-45235871 | None:intergenic | 45.0% |
| TGTAGATCTTCACTTGGAGG+AGG | + | chr2_1:45236016-45236035 | None:intergenic | 45.0% | |
| TTCAGACCCTTAAGGATGGT+AGG | + | chr2_1:45236151-45236170 | None:intergenic | 45.0% | |
| CTGTTTCAGACCCTTAAGGA+TGG | + | chr2_1:45236155-45236174 | None:intergenic | 45.0% | |
| ! | CAAGCTGTTTCAGACCCTTA+AGG | + | chr2_1:45236159-45236178 | None:intergenic | 45.0% |
| ! | AAGGGTCTGAAACAGCTTGT+TGG | - | chr2_1:45236160-45236179 | Msa0208880:CDS | 45.0% |
| !! | AGCTTTTGGCGTTTTGGACA+TGG | + | chr2_1:45234866-45234885 | None:intergenic | 45.0% |
| ACTGAGAAGACACAAGAGCT+AGG | - | chr2_1:45235097-45235116 | Msa0208880:intron | 45.0% | |
| CTGAGAAGACACAAGAGCTA+GGG | - | chr2_1:45235098-45235117 | Msa0208880:intron | 45.0% | |
| TGAGCTGGCTATGTTCAACA+AGG | - | chr2_1:45235728-45235747 | Msa0208880:CDS | 45.0% | |
| !! | CTAGGTGCTGAATCATGTCA+TGG | + | chr2_1:45235852-45235871 | None:intergenic | 45.0% |
| TGTAGATCTTCACTTGGAGG+AGG | + | chr2_1:45236016-45236035 | None:intergenic | 45.0% | |
| TTCAGACCCTTAAGGATGGT+AGG | + | chr2_1:45236151-45236170 | None:intergenic | 45.0% | |
| CTGTTTCAGACCCTTAAGGA+TGG | + | chr2_1:45236155-45236174 | None:intergenic | 45.0% | |
| ! | CAAGCTGTTTCAGACCCTTA+AGG | + | chr2_1:45236159-45236178 | None:intergenic | 45.0% |
| ! | AAGGGTCTGAAACAGCTTGT+TGG | - | chr2_1:45236160-45236179 | Msa0208880:CDS | 45.0% |
| !! | TATCTCGTCGCAGAGTATCG+CGG | - | chr2_1:45235051-45235070 | Msa0208880:intron | 50.0% |
| GACACAAGAGCTAGGGAAGT+TGG | - | chr2_1:45235105-45235124 | Msa0208880:intron | 50.0% | |
| GTGTTCATCTTTGGTCCACC+AGG | + | chr2_1:45235133-45235152 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr2_1:45235593-45235612 | Msa0208880:intron | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr2_1:45235592-45235611 | Msa0208880:intron | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+GGG | - | chr2_1:45235593-45235612 | Msa0208880:intron | 50.0% | |
| AGAGAGAGAGAGAGGGGTTA+GGG | - | chr2_1:45235635-45235654 | Msa0208880:intron | 50.0% | |
| AGAGAGAGGGGTTAGGGAAA+CGG | - | chr2_1:45235641-45235660 | Msa0208880:intron | 50.0% | |
| !! | TATCTCGTCGCAGAGTATCG+CGG | - | chr2_1:45235051-45235070 | Msa0208880:intron | 50.0% |
| GACACAAGAGCTAGGGAAGT+TGG | - | chr2_1:45235105-45235124 | Msa0208880:intron | 50.0% | |
| GTGTTCATCTTTGGTCCACC+AGG | + | chr2_1:45235133-45235152 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr2_1:45235593-45235612 | Msa0208880:intron | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr2_1:45235592-45235611 | Msa0208880:intron | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+GGG | - | chr2_1:45235593-45235612 | Msa0208880:intron | 50.0% | |
| AGAGAGAGAGAGAGGGGTTA+GGG | - | chr2_1:45235635-45235654 | Msa0208880:intron | 50.0% | |
| AGAGAGAGGGGTTAGGGAAA+CGG | - | chr2_1:45235641-45235660 | Msa0208880:intron | 50.0% | |
| !! | GGCGTTTTGGACATGGAAGC+TGG | + | chr2_1:45234859-45234878 | None:intergenic | 55.0% |
| !! | AGAGTATCGCGGCTCGAGAA+AGG | - | chr2_1:45235062-45235081 | Msa0208880:intron | 55.0% |
| ! | GAGCTAGGGAAGTTGGTTCC+TGG | - | chr2_1:45235112-45235131 | Msa0208880:intron | 55.0% |
| ! | CTAGGGAAGTTGGTTCCTGG+TGG | - | chr2_1:45235115-45235134 | Msa0208880:intron | 55.0% |
| GAGAGAGAGAGAGAGGGGTT+AGG | - | chr2_1:45235634-45235653 | Msa0208880:intron | 55.0% | |
| !! | GGCGTTTTGGACATGGAAGC+TGG | + | chr2_1:45234859-45234878 | None:intergenic | 55.0% |
| !! | AGAGTATCGCGGCTCGAGAA+AGG | - | chr2_1:45235062-45235081 | Msa0208880:intron | 55.0% |
| ! | GAGCTAGGGAAGTTGGTTCC+TGG | - | chr2_1:45235112-45235131 | Msa0208880:intron | 55.0% |
| ! | CTAGGGAAGTTGGTTCCTGG+TGG | - | chr2_1:45235115-45235134 | Msa0208880:intron | 55.0% |
| GAGAGAGAGAGAGAGGGGTT+AGG | - | chr2_1:45235634-45235653 | Msa0208880:intron | 55.0% | |
| TCGCGGCTCGAGAAAGGAGA+AGG | - | chr2_1:45235068-45235087 | Msa0208880:intron | 60.0% | |
| TCGCGGCTCGAGAAAGGAGA+AGG | - | chr2_1:45235068-45235087 | Msa0208880:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 45234689 | 45236216 | 45234689 | ID=Msa0208880;Name=Msa0208880 |
| chr2_1 | mRNA | 45234689 | 45236216 | 45234689 | ID=Msa0208880-mRNA-1;Parent=Msa0208880;Name=Msa0208880-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|2|0|255 |
| chr2_1 | exon | 45235665 | 45236216 | 45235665 | ID=Msa0208880-mRNA-1:exon:13087;Parent=Msa0208880-mRNA-1 |
| chr2_1 | exon | 45234689 | 45234904 | 45234689 | ID=Msa0208880-mRNA-1:exon:13086;Parent=Msa0208880-mRNA-1 |
| chr2_1 | CDS | 45235665 | 45236216 | 45235665 | ID=Msa0208880-mRNA-1:cds;Parent=Msa0208880-mRNA-1 |
| chr2_1 | CDS | 45234689 | 45234904 | 45234689 | ID=Msa0208880-mRNA-1:cds;Parent=Msa0208880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
