Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0210180 | XP_003610735.1 | 96.296 | 108 | 4 | 0 | 1 | 108 | 1 | 108 | 1.16e-66 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0210180 | sp|O34569|YOAA_BACSU | 35.577 | 104 | 64 | 2 | 170 | 273 | 73 | 173 | 1.02e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0210180 | G7K3P0 | 96.296 | 108 | 4 | 0 | 1 | 108 | 1 | 108 | 5.54e-67 | 214 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0210180 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0210180 | MtrunA17_Chr5g0394601 | 96.296 | 108 | 4 | 0 | 1 | 108 | 1 | 108 | 1.07e-70 | 214 |
| Msa0210180 | MtrunA17_Chr5g0394621 | 95.699 | 93 | 4 | 0 | 187 | 279 | 98 | 190 | 1.47e-56 | 181 |
| Msa0210180 | MtrunA17_Chr5g0394621 | 73.563 | 87 | 23 | 0 | 101 | 187 | 81 | 167 | 8.44e-35 | 125 |
| Msa0210180 | MtrunA17_Chr5g0394631 | 79.570 | 93 | 17 | 1 | 189 | 279 | 309 | 401 | 3.68e-42 | 150 |
| Msa0210180 | MtrunA17_Chr5g0394631 | 84.337 | 83 | 13 | 0 | 187 | 269 | 98 | 180 | 9.12e-39 | 141 |
| Msa0210180 | MtrunA17_Chr5g0394631 | 65.169 | 89 | 31 | 0 | 99 | 187 | 79 | 167 | 1.14e-28 | 114 |
| Msa0210180 | MtrunA17_Chr1g0205251 | 78.824 | 85 | 17 | 1 | 1 | 84 | 1 | 85 | 1.18e-41 | 140 |
| Msa0210180 | MtrunA17_Chr1g0204951 | 72.043 | 93 | 26 | 0 | 187 | 279 | 98 | 190 | 1.90e-40 | 139 |
| Msa0210180 | MtrunA17_Chr1g0204951 | 68.493 | 73 | 23 | 0 | 115 | 187 | 95 | 167 | 7.73e-27 | 104 |
| Msa0210180 | MtrunA17_Chr1g0204971 | 66.667 | 93 | 31 | 0 | 187 | 279 | 98 | 190 | 3.52e-36 | 128 |
| Msa0210180 | MtrunA17_Chr1g0204971 | 65.753 | 73 | 25 | 0 | 115 | 187 | 95 | 167 | 1.67e-24 | 98.2 |
| Msa0210180 | MtrunA17_Chr8g0344381 | 49.038 | 104 | 45 | 2 | 2 | 97 | 30 | 133 | 9.34e-27 | 103 |
| Msa0210180 | MtrunA17_Chr7g0223361 | 48.837 | 86 | 44 | 0 | 191 | 276 | 85 | 170 | 9.97e-22 | 90.1 |
| Msa0210180 | MtrunA17_Chr7g0223361 | 54.545 | 66 | 30 | 0 | 122 | 187 | 85 | 150 | 3.04e-16 | 75.5 |
| Msa0210180 | MtrunA17_Chr3g0136441 | 47.945 | 73 | 38 | 0 | 1 | 73 | 10 | 82 | 1.92e-21 | 88.2 |
| Msa0210180 | MtrunA17_Chr4g0070371 | 47.222 | 72 | 38 | 0 | 1 | 72 | 23 | 94 | 1.43e-20 | 86.7 |
| Msa0210180 | MtrunA17_Chr7g0223351 | 47.674 | 86 | 45 | 0 | 191 | 276 | 84 | 169 | 2.61e-19 | 83.6 |
| Msa0210180 | MtrunA17_Chr7g0223351 | 51.515 | 66 | 32 | 0 | 122 | 187 | 84 | 149 | 6.27e-16 | 74.3 |
| Msa0210180 | MtrunA17_Chr3g0140381 | 36.752 | 117 | 64 | 2 | 2 | 114 | 36 | 146 | 7.91e-19 | 81.6 |
| Msa0210180 | MtrunA17_Chr4g0070351 | 47.297 | 74 | 39 | 0 | 1 | 74 | 29 | 102 | 9.19e-19 | 80.9 |
| Msa0210180 | MtrunA17_Chr7g0273661 | 50.667 | 75 | 36 | 1 | 188 | 261 | 82 | 156 | 1.84e-18 | 80.9 |
| Msa0210180 | MtrunA17_Chr7g0273661 | 56.061 | 66 | 29 | 0 | 122 | 187 | 86 | 151 | 4.52e-16 | 74.3 |
| Msa0210180 | MtrunA17_Chr8g0340421 | 44.944 | 89 | 40 | 3 | 2 | 84 | 62 | 147 | 2.65e-18 | 81.3 |
| Msa0210180 | MtrunA17_Chr2g0331111 | 43.678 | 87 | 44 | 2 | 2 | 84 | 62 | 147 | 3.44e-17 | 78.6 |
| Msa0210180 | MtrunA17_Chr1g0150711 | 36.283 | 113 | 59 | 3 | 5 | 104 | 19 | 131 | 1.18e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0210180 | AT3G22540.1 | 68.519 | 108 | 30 | 3 | 1 | 105 | 1 | 107 | 8.60e-41 | 138 |
| Msa0210180 | AT4G14819.1 | 64.151 | 106 | 35 | 2 | 1 | 105 | 1 | 104 | 1.86e-37 | 129 |
| Msa0210180 | AT2G32030.1 | 60.465 | 86 | 34 | 0 | 191 | 276 | 100 | 185 | 1.34e-29 | 112 |
| Msa0210180 | AT2G32030.1 | 69.697 | 66 | 20 | 0 | 122 | 187 | 100 | 165 | 3.78e-22 | 92.0 |
| Msa0210180 | AT2G32020.1 | 60.000 | 85 | 34 | 0 | 192 | 276 | 96 | 180 | 4.16e-27 | 105 |
| Msa0210180 | AT2G32020.1 | 67.647 | 68 | 22 | 0 | 123 | 190 | 96 | 163 | 5.99e-23 | 94.0 |
| Msa0210180 | AT1G72510.1 | 48.352 | 91 | 42 | 1 | 2 | 87 | 33 | 123 | 2.92e-22 | 91.7 |
| Msa0210180 | AT1G72510.2 | 48.352 | 91 | 42 | 1 | 2 | 87 | 33 | 123 | 2.92e-22 | 91.7 |
| Msa0210180 | AT3G22560.1 | 48.837 | 86 | 44 | 0 | 191 | 276 | 87 | 172 | 1.54e-20 | 87.4 |
| Msa0210180 | AT3G22560.1 | 40.385 | 104 | 53 | 3 | 85 | 187 | 57 | 152 | 6.86e-14 | 69.3 |
| Msa0210180 | AT5G20670.1 | 39.423 | 104 | 52 | 2 | 3 | 95 | 23 | 126 | 1.32e-19 | 84.3 |
| Msa0210180 | AT1G79770.1 | 43.119 | 109 | 57 | 2 | 1 | 105 | 50 | 157 | 1.39e-19 | 84.7 |
| Msa0210180 | AT5G25840.1 | 39.048 | 105 | 55 | 2 | 2 | 97 | 42 | 146 | 4.61e-18 | 80.5 |
| Msa0210180 | AT1G54095.1 | 46.053 | 76 | 38 | 2 | 2 | 74 | 15 | 90 | 1.60e-14 | 70.1 |
| Msa0210180 | AT2G09970.1 | 38.043 | 92 | 51 | 2 | 2 | 87 | 33 | 124 | 3.47e-14 | 69.7 |
| Msa0210180 | AT2G25780.1 | 38.202 | 89 | 48 | 3 | 7 | 89 | 40 | 127 | 3.60e-12 | 63.9 |
Find 58 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATCAAATGTGCAGAAAT+TGG | 0.218349 | 2_1:-50195783 | Msa0210180:CDS |
| TCCTAAGAACTCCCTCCTTT+TGG | 0.260104 | 2_1:+50195598 | None:intergenic |
| CTCCAACTAATTCAATTGTT+TGG | 0.272334 | 2_1:-50193158 | Msa0210180:CDS |
| TGTTGGGTCTCAAAGAGTTT+TGG | 0.282550 | 2_1:-50193279 | Msa0210180:CDS |
| AGTCAAAATTTGATGGAAAA+TGG | 0.285752 | 2_1:-50196210 | Msa0210180:CDS |
| ATGTTCTAGGCTCTAAATAT+TGG | 0.292142 | 2_1:-50193403 | Msa0210180:CDS |
| ATGTTCTAGGGTCTAAATAC+TGG | 0.295533 | 2_1:-50195758 | Msa0210180:CDS |
| GCAGAACTTGGCTATGTTCT+AGG | 0.302641 | 2_1:-50193416 | Msa0210180:CDS |
| GCAGAAATTGGGTATGTTCT+AGG | 0.308658 | 2_1:-50195771 | Msa0210180:CDS |
| TGTTCTAGGCTCTAAATATT+GGG | 0.316974 | 2_1:-50193402 | Msa0210180:CDS |
| GCATATACAACTTAAATAAT+AGG | 0.325883 | 2_1:+50193059 | None:intergenic |
| CATCATCTATCTTATTTGTA+TGG | 0.348271 | 2_1:+50193102 | None:intergenic |
| GCTCTAAATATTGGGGTAAA+GGG | 0.356917 | 2_1:-50193394 | Msa0210180:CDS |
| TTCCAAACAATTGAATTAGT+TGG | 0.367321 | 2_1:+50193156 | None:intergenic |
| GTTAGAGATGAAGCTATTAG+AGG | 0.393393 | 2_1:-50196163 | Msa0210180:CDS |
| TCCAAAAGGAGGGAGTTCTT+AGG | 0.394554 | 2_1:-50195599 | Msa0210180:CDS |
| GGGTCTAAATACTGGGGTAA+AGG | 0.408523 | 2_1:-50195750 | Msa0210180:CDS |
| CACGTTTGCTGTGAAACAAA+TGG | 0.422199 | 2_1:-50195721 | Msa0210180:CDS |
| GGCTCTAAATATTGGGGTAA+AGG | 0.422886 | 2_1:-50193395 | Msa0210180:CDS |
| GGTCTAAATACTGGGGTAAA+GGG | 0.432496 | 2_1:-50195749 | Msa0210180:CDS |
| CTTGTTGATGTGGATAATGT+TGG | 0.439455 | 2_1:-50195651 | Msa0210180:CDS |
| ATTCTGTGAGTTGTCTTACT+TGG | 0.446468 | 2_1:-50193333 | Msa0210180:CDS |
| CAAAGAGTGCTTGAGAAAGT+TGG | 0.446874 | 2_1:-50195624 | Msa0210180:CDS |
| GAATCAAATGTGCAGAAATT+GGG | 0.456981 | 2_1:-50195782 | Msa0210180:CDS |
| GAAGTGAAGTCAAAATTTGA+TGG | 0.458617 | 2_1:-50196217 | Msa0210180:CDS |
| TGCTGTGAAACAAATGGTTA+AGG | 0.473285 | 2_1:-50195715 | Msa0210180:CDS |
| AGGAAATATTTGTTCATGAA+AGG | 0.480337 | 2_1:-50193224 | Msa0210180:CDS |
| TTTGATGGAAAATGGTTATG+TGG | 0.481592 | 2_1:-50196202 | Msa0210180:CDS |
| AGGAACAAATGTGCAGAACT+TGG | 0.481600 | 2_1:-50193428 | Msa0210180:CDS |
| GTGAGTTGTCTTACTTGGAA+AGG | 0.487957 | 2_1:-50193328 | Msa0210180:CDS |
| GCTTGAAGCTTTAGTTGATG+TGG | 0.488968 | 2_1:-50193306 | Msa0210180:CDS |
| TAGTTGATGTGGAAAATGTT+GGG | 0.494202 | 2_1:-50193295 | Msa0210180:CDS |
| TGAGAAAGTTGGTTTCCAAA+AGG | 0.498958 | 2_1:-50195613 | Msa0210180:CDS |
| CAGAAATTGGGTATGTTCTA+GGG | 0.510753 | 2_1:-50195770 | Msa0210180:CDS |
| TGTTCTAGGGTCTAAATACT+GGG | 0.513003 | 2_1:-50195757 | Msa0210180:CDS |
| AACTTTGTTGACCTTCTCCT+AGG | 0.514865 | 2_1:+50196034 | None:intergenic |
| TTAGTTGATGTGGAAAATGT+TGG | 0.523001 | 2_1:-50193296 | Msa0210180:CDS |
| TTGATGGAAAATGGTTATGT+GGG | 0.531455 | 2_1:-50196201 | Msa0210180:CDS |
| TTGTTGATGTGGATAATGTT+GGG | 0.535303 | 2_1:-50195650 | Msa0210180:CDS |
| GAAAGTTGGTTTCCAAAAGG+AGG | 0.543592 | 2_1:-50195610 | Msa0210180:CDS |
| TGAGTGTTGCGGCTTAAAAG+AGG | 0.545307 | 2_1:-50196263 | Msa0210180:CDS |
| TGTTGTGAAACAAGTGGTTA+AGG | 0.545474 | 2_1:-50193360 | Msa0210180:CDS |
| AATAATAGGTGTCATAGAGA+TGG | 0.552262 | 2_1:+50193073 | None:intergenic |
| CTCTAAATATTGGGGTAAAG+GGG | 0.564900 | 2_1:-50193393 | Msa0210180:CDS |
| GCTTGAAGCTCTTGTTGATG+TGG | 0.580383 | 2_1:-50195661 | Msa0210180:CDS |
| CCATCAGCAACACAAACTGC+AGG | 0.594058 | 2_1:+50196070 | None:intergenic |
| AAAGTTGGTTTCCAAAAGGA+GGG | 0.596054 | 2_1:-50195609 | Msa0210180:CDS |
| ATGGTATGAGACAGATACCT+AGG | 0.596540 | 2_1:-50196051 | Msa0210180:CDS |
| CACTTGTTTCACAACACACG+TGG | 0.596860 | 2_1:+50193367 | None:intergenic |
| TTAGAGATGAAGCTATTAGA+GGG | 0.599426 | 2_1:-50196162 | Msa0210180:CDS |
| CCTGCAGTTTGTGTTGCTGA+TGG | 0.605550 | 2_1:-50196070 | Msa0210180:CDS |
| TGAGACAGATACCTAGGAGA+AGG | 0.609498 | 2_1:-50196045 | Msa0210180:CDS |
| TCAGCTAAGTGTGAGTGTTG+CGG | 0.613560 | 2_1:-50196274 | Msa0210180:CDS |
| GTTCTAGGCTCTAAATATTG+GGG | 0.619040 | 2_1:-50193401 | Msa0210180:CDS |
| CATTTGTTTCACAGCAAACG+TGG | 0.659491 | 2_1:+50195722 | None:intergenic |
| CATCAAACAAACACAGTACG+AGG | 0.670845 | 2_1:-50196006 | Msa0210180:CDS |
| GTTCTAGGGTCTAAATACTG+GGG | 0.712321 | 2_1:-50195756 | Msa0210180:CDS |
| CACGTGTGTTGTGAAACAAG+TGG | 0.736637 | 2_1:-50193366 | Msa0210180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTACCTTTTTATTAATTTAT+TGG | - | chr2_1:50193938-50193957 | Msa0210180:intron | 10.0% |
| !!! | TTTTTTTTTGCTTATAATTT+GGG | + | chr2_1:50194093-50194112 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTGCTTATAATT+TGG | + | chr2_1:50194094-50194113 | None:intergenic | 10.0% |
| !!! | TTATTTATTTTTTGTTGTAA+GGG | + | chr2_1:50194668-50194687 | None:intergenic | 10.0% |
| !!! | TTTATTTATTTTTTGTTGTA+AGG | + | chr2_1:50194669-50194688 | None:intergenic | 10.0% |
| !! | ACTAAAAAAAATATTTCATA+TGG | + | chr2_1:50194882-50194901 | None:intergenic | 10.0% |
| !!! | TATGAAATATTTTTTTTAGT+AGG | - | chr2_1:50194882-50194901 | Msa0210180:intron | 10.0% |
| !!! | TTTTATTTTATTCTAAATCT+TGG | + | chr2_1:50195080-50195099 | None:intergenic | 10.0% |
| !! | ATTGCTTACTATTTAAAAAA+AGG | + | chr2_1:50193489-50193508 | None:intergenic | 15.0% |
| !! | CAACCAATAAATTAATAAAA+AGG | + | chr2_1:50193944-50193963 | None:intergenic | 15.0% |
| !! | AAAACTAAAACATAAGAATT+TGG | - | chr2_1:50194130-50194149 | Msa0210180:intron | 15.0% |
| !!! | TTCTTTGAAAAAAGTTTTAT+AGG | - | chr2_1:50194171-50194190 | Msa0210180:intron | 15.0% |
| !!! | TGTTTTTTTTGCTTATATTA+TGG | - | chr2_1:50194356-50194375 | Msa0210180:intron | 15.0% |
| !!! | GTTTTTTTTGCTTATATTAT+GGG | - | chr2_1:50194357-50194376 | Msa0210180:intron | 15.0% |
| !!! | TGTAAAATATGTTTTTTTAG+AGG | + | chr2_1:50194474-50194493 | None:intergenic | 15.0% |
| !! | TTCATATGGAAATTATTAAA+TGG | + | chr2_1:50194868-50194887 | None:intergenic | 15.0% |
| !!! | TTTGATCACAAATATTTTTT+TGG | - | chr2_1:50195215-50195234 | Msa0210180:intron | 15.0% |
| !! | TTATAGTTATATATCAGTAA+TGG | - | chr2_1:50195251-50195270 | Msa0210180:intron | 15.0% |
| !! | ACTTGAATAATGTATTAAAA+TGG | + | chr2_1:50195385-50195404 | None:intergenic | 15.0% |
| !!! | ATTCATTGTATTTTCATACT+TGG | - | chr2_1:50193668-50193687 | Msa0210180:intron | 20.0% |
| !! | CAAAATTGAGAAAATATTAG+AGG | - | chr2_1:50193869-50193888 | Msa0210180:intron | 20.0% |
| !!! | TTATTAATTTATTGGTTGTC+CGG | - | chr2_1:50193946-50193965 | Msa0210180:intron | 20.0% |
| !!! | GATGTAAAAACAATTTTCAT+TGG | - | chr2_1:50194196-50194215 | Msa0210180:intron | 20.0% |
| !!! | TGTCTTTTTTGCTTATATTT+TGG | - | chr2_1:50194320-50194339 | Msa0210180:intron | 20.0% |
| !!! | GTCTTTTTTGCTTATATTTT+GGG | - | chr2_1:50194321-50194340 | Msa0210180:intron | 20.0% |
| !!! | ACTATAGTGCATATTTTTTT+TGG | - | chr2_1:50194598-50194617 | Msa0210180:intron | 20.0% |
| !! | CAAAAATGATTTACAATTGT+TGG | - | chr2_1:50195041-50195060 | Msa0210180:intron | 20.0% |
| !!! | TATATAAGAATTTTCACCAT+AGG | - | chr2_1:50196225-50196244 | Msa0210180:CDS | 20.0% |
| ! | AGTCAAAATTTGATGGAAAA+TGG | - | chr2_1:50193146-50193165 | Msa0210180:CDS | 25.0% |
| ! | TATTTCAACCATACCAAAAA+CGG | + | chr2_1:50193454-50193473 | None:intergenic | 25.0% |
| !! | TTGTATTTTCATACTTGGAA+AGG | - | chr2_1:50193673-50193692 | Msa0210180:intron | 25.0% |
| !! | AGGAAGTATGTATTCTTTAA+AGG | - | chr2_1:50193777-50193796 | Msa0210180:intron | 25.0% |
| ! | AGATTGTACAATGATATATC+TGG | + | chr2_1:50193994-50194013 | None:intergenic | 25.0% |
| ! | AATCTCCTATCAAGTAATTA+AGG | - | chr2_1:50194009-50194028 | Msa0210180:intron | 25.0% |
| !! | TTTTTGCTTATAATTTGGGA+CGG | + | chr2_1:50194089-50194108 | None:intergenic | 25.0% |
| !!! | AAACAATTTTCATTGGCTAT+TGG | - | chr2_1:50194203-50194222 | Msa0210180:intron | 25.0% |
| !! | TTTTTGCTTATATTATGGGA+CGG | - | chr2_1:50194361-50194380 | Msa0210180:intron | 25.0% |
| ! | AGAAATTACATACATATGTG+TGG | + | chr2_1:50194426-50194445 | None:intergenic | 25.0% |
| ! | CAATATCTCATGAAATCTAT+TGG | - | chr2_1:50194562-50194581 | Msa0210180:intron | 25.0% |
| !!! | ATATTTTTTTTAGTAGGTCG+CGG | - | chr2_1:50194888-50194907 | Msa0210180:intron | 25.0% |
| !! | TTAAGTGTTTTTCATGAACA+AGG | + | chr2_1:50194918-50194937 | None:intergenic | 25.0% |
| ! | GTCTCTTGATAAACTAAATT+TGG | - | chr2_1:50194946-50194965 | Msa0210180:intron | 25.0% |
| ! | CTGTCTAATGTTAGTTAATT+TGG | + | chr2_1:50195014-50195033 | None:intergenic | 25.0% |
| !! | GATTTACAATTGTTGGTTAT+TGG | - | chr2_1:50195048-50195067 | Msa0210180:intron | 25.0% |
| !!! | ATTATTTTGAGACGTAACAT+AGG | - | chr2_1:50195110-50195129 | Msa0210180:intron | 25.0% |
| !!! | TTATTTTGAGACGTAACATA+GGG | - | chr2_1:50195111-50195130 | Msa0210180:intron | 25.0% |
| !!! | TCTAACACCTAAGTTATTTT+TGG | + | chr2_1:50195149-50195168 | None:intergenic | 25.0% |
| ! | AAAAGAAAAAGCAGAGTTAA+AGG | + | chr2_1:50195502-50195521 | None:intergenic | 25.0% |
| !!! | GCATTAAAGTGTTGAATTTT+AGG | + | chr2_1:50195550-50195569 | None:intergenic | 25.0% |
| !! | TTCTTTTATCTTGGCTAATT+TGG | + | chr2_1:50195575-50195594 | None:intergenic | 25.0% |
| !! | ACTTGTGTTTTCTTTTATCT+TGG | + | chr2_1:50195584-50195603 | None:intergenic | 25.0% |
| ! | ATATAGCTACTAAGTTTCTA+TGG | - | chr2_1:50195831-50195850 | Msa0210180:intron | 25.0% |
| ! | AGGAAATATTTGTTCATGAA+AGG | - | chr2_1:50196132-50196151 | Msa0210180:CDS | 25.0% |
| ! | TTCCAAACAATTGAATTAGT+TGG | + | chr2_1:50196203-50196222 | None:intergenic | 25.0% |
| !!! | ATTTGTATGGTTTTTTCCTA+TGG | + | chr2_1:50196244-50196263 | None:intergenic | 25.0% |
| !! | CATCATCTATCTTATTTGTA+TGG | + | chr2_1:50196257-50196276 | None:intergenic | 25.0% |
| GAAGTGAAGTCAAAATTTGA+TGG | - | chr2_1:50193139-50193158 | Msa0210180:CDS | 30.0% | |
| TTTGATGGAAAATGGTTATG+TGG | - | chr2_1:50193154-50193173 | Msa0210180:CDS | 30.0% | |
| TTGATGGAAAATGGTTATGT+GGG | - | chr2_1:50193155-50193174 | Msa0210180:CDS | 30.0% | |
| TTAGAGATGAAGCTATTAGA+GGG | - | chr2_1:50193194-50193213 | Msa0210180:CDS | 30.0% | |
| ! | TTTTTATTCACCACCTACTT+GGG | + | chr2_1:50193389-50193408 | None:intergenic | 30.0% |
| !!! | TTTTTTATTCACCACCTACT+TGG | + | chr2_1:50193390-50193409 | None:intergenic | 30.0% |
| GAATAAAAAACAGAGGAGAT+TGG | - | chr2_1:50193400-50193419 | Msa0210180:CDS | 30.0% | |
| AGAATCAAATGTGCAGAAAT+TGG | - | chr2_1:50193573-50193592 | Msa0210180:intron | 30.0% | |
| GAATCAAATGTGCAGAAATT+GGG | - | chr2_1:50193574-50193593 | Msa0210180:intron | 30.0% | |
| TTGTTGATGTGGATAATGTT+GGG | - | chr2_1:50193706-50193725 | Msa0210180:intron | 30.0% | |
| ATGGTTCAATTAGATTGAAC+CGG | + | chr2_1:50193968-50193987 | None:intergenic | 30.0% | |
| ACAATGATATATCTGGATCA+TGG | + | chr2_1:50193987-50194006 | None:intergenic | 30.0% | |
| CAATGCCTTAATTACTTGAT+AGG | + | chr2_1:50194017-50194036 | None:intergenic | 30.0% | |
| !! | TTTTCATTGGCTATTGGTTA+TGG | - | chr2_1:50194209-50194228 | Msa0210180:intron | 30.0% |
| ATACATTTGAACATGCATCT+AGG | - | chr2_1:50194518-50194537 | Msa0210180:intron | 30.0% | |
| ATTTCAACTCTACAGAGAAA+AGG | - | chr2_1:50194804-50194823 | Msa0210180:intron | 30.0% | |
| ! | GTTGTGTTATTCATTGATCA+TGG | - | chr2_1:50194971-50194990 | Msa0210180:intron | 30.0% |
| !!! | TATTTTGAGACGTAACATAG+GGG | - | chr2_1:50195112-50195131 | Msa0210180:intron | 30.0% |
| AACCTGTCCAAAAATAACTT+AGG | - | chr2_1:50195139-50195158 | Msa0210180:intron | 30.0% | |
| TACATTATTCAAGTCAACCA+TGG | - | chr2_1:50195391-50195410 | Msa0210180:intron | 30.0% | |
| !! | ATGGAAGAAAGTATCAAGTT+GGG | + | chr2_1:50195472-50195491 | None:intergenic | 30.0% |
| TTAGGCTATTTATAGAGTCA+TGG | + | chr2_1:50195532-50195551 | None:intergenic | 30.0% | |
| ATCAAGGTCAGAAAGATTAA+GGG | + | chr2_1:50195717-50195736 | None:intergenic | 30.0% | |
| TTTGTTCCTTGATTTATCAC+AGG | + | chr2_1:50195917-50195936 | None:intergenic | 30.0% | |
| !! | ATGTTCTAGGCTCTAAATAT+TGG | - | chr2_1:50195953-50195972 | Msa0210180:intron | 30.0% |
| !! | TGTTCTAGGCTCTAAATATT+GGG | - | chr2_1:50195954-50195973 | Msa0210180:intron | 30.0% |
| ! | TTAGTTGATGTGGAAAATGT+TGG | - | chr2_1:50196060-50196079 | Msa0210180:CDS | 30.0% |
| ! | TAGTTGATGTGGAAAATGTT+GGG | - | chr2_1:50196061-50196080 | Msa0210180:CDS | 30.0% |
| CTCCAACTAATTCAATTGTT+TGG | - | chr2_1:50196198-50196217 | Msa0210180:CDS | 30.0% | |
| ! | AATAATAGGTGTCATAGAGA+TGG | + | chr2_1:50196286-50196305 | None:intergenic | 30.0% |
| GTTAGAGATGAAGCTATTAG+AGG | - | chr2_1:50193193-50193212 | Msa0210180:CDS | 35.0% | |
| AGGGAAAAAGACATTTGCAA+TGG | - | chr2_1:50193213-50193232 | Msa0210180:CDS | 35.0% | |
| AGGTGGTGAATAAAAAACAG+AGG | - | chr2_1:50193393-50193412 | Msa0210180:CDS | 35.0% | |
| AAAAACAGAGGAGATTGGAA+AGG | - | chr2_1:50193405-50193424 | Msa0210180:CDS | 35.0% | |
| TGCCATAATGATCATGCTAT+TGG | - | chr2_1:50193510-50193529 | Msa0210180:intron | 35.0% | |
| GCCATAATGATCATGCTATT+GGG | - | chr2_1:50193511-50193530 | Msa0210180:intron | 35.0% | |
| ACCCAATAGCATGATCATTA+TGG | + | chr2_1:50193515-50193534 | None:intergenic | 35.0% | |
| CAGAAATTGGGTATGTTCTA+GGG | - | chr2_1:50193586-50193605 | Msa0210180:intron | 35.0% | |
| !! | ATGTTCTAGGGTCTAAATAC+TGG | - | chr2_1:50193598-50193617 | Msa0210180:intron | 35.0% |
| !! | TGTTCTAGGGTCTAAATACT+GGG | - | chr2_1:50193599-50193618 | Msa0210180:intron | 35.0% |
| TGCTGTGAAACAAATGGTTA+AGG | - | chr2_1:50193641-50193660 | Msa0210180:intron | 35.0% | |
| CTTGTTGATGTGGATAATGT+TGG | - | chr2_1:50193705-50193724 | Msa0210180:intron | 35.0% | |
| ! | TGAGAAAGTTGGTTTCCAAA+AGG | - | chr2_1:50193743-50193762 | Msa0210180:intron | 35.0% |
| ! | AAAGTTGGTTTCCAAAAGGA+GGG | - | chr2_1:50193747-50193766 | Msa0210180:intron | 35.0% |
| !! | GGCATTGATTTAGATCTATG+AGG | - | chr2_1:50194030-50194049 | Msa0210180:intron | 35.0% |
| !! | AACAGGCACTGAATTTGTTT+CGG | + | chr2_1:50194706-50194725 | None:intergenic | 35.0% |
| ACTCTACAGAGAAAAGGAAT+TGG | - | chr2_1:50194810-50194829 | Msa0210180:intron | 35.0% | |
| !! | ATTGGTTTGTAATTGAGACC+AGG | - | chr2_1:50194828-50194847 | Msa0210180:intron | 35.0% |
| !! | TTGGTTTGTAATTGAGACCA+GGG | - | chr2_1:50194829-50194848 | Msa0210180:intron | 35.0% |
| ! | GTGTTTTTCATGAACAAGGT+GGG | + | chr2_1:50194914-50194933 | None:intergenic | 35.0% |
| ! | AGTGTTTTTCATGAACAAGG+TGG | + | chr2_1:50194915-50194934 | None:intergenic | 35.0% |
| !!! | CACCTAAGTTATTTTTGGAC+AGG | + | chr2_1:50195144-50195163 | None:intergenic | 35.0% |
| TTCATGTATGTGAGCTTCAT+AGG | - | chr2_1:50195352-50195371 | Msa0210180:intron | 35.0% | |
| AAGCAAGAAAAGGGAAGTAA+GGG | + | chr2_1:50195446-50195465 | None:intergenic | 35.0% | |
| !! | CATGGAAGAAAGTATCAAGT+TGG | + | chr2_1:50195473-50195492 | None:intergenic | 35.0% |
| !! | GAAAGAAACAAGTGTTGAGA+TGG | - | chr2_1:50195619-50195638 | Msa0210180:CDS | 35.0% |
| TCAAGGTCAGAAAGATTAAG+GGG | + | chr2_1:50195716-50195735 | None:intergenic | 35.0% | |
| CATCAAGGTCAGAAAGATTA+AGG | + | chr2_1:50195718-50195737 | None:intergenic | 35.0% | |
| ATGGACAACTGATGAAAAAG+TGG | - | chr2_1:50195748-50195767 | Msa0210180:CDS | 35.0% | |
| ATTTATCACAGGTCAACTTG+AGG | + | chr2_1:50195906-50195925 | None:intergenic | 35.0% | |
| AGTTGACCTGTGATAAATCA+AGG | - | chr2_1:50195908-50195927 | Msa0210180:intron | 35.0% | |
| !! | GTTCTAGGCTCTAAATATTG+GGG | - | chr2_1:50195955-50195974 | Msa0210180:intron | 35.0% |
| ! | GCTCTAAATATTGGGGTAAA+GGG | - | chr2_1:50195962-50195981 | Msa0210180:intron | 35.0% |
| CTCTAAATATTGGGGTAAAG+GGG | - | chr2_1:50195963-50195982 | Msa0210180:intron | 35.0% | |
| TGTTGTGAAACAAGTGGTTA+AGG | - | chr2_1:50195996-50196015 | Msa0210180:CDS | 35.0% | |
| ATTCTGTGAGTTGTCTTACT+TGG | - | chr2_1:50196023-50196042 | Msa0210180:CDS | 35.0% | |
| ! | AAAGCTGGTTTCCAAAAAGA+GGG | - | chr2_1:50196102-50196121 | Msa0210180:CDS | 35.0% |
| ATGGTATGAGACAGATACCT+AGG | - | chr2_1:50193305-50193324 | Msa0210180:CDS | 40.0% | |
| AACTTTGTTGACCTTCTCCT+AGG | + | chr2_1:50193325-50193344 | None:intergenic | 40.0% | |
| CATCAAACAAACACAGTACG+AGG | - | chr2_1:50193350-50193369 | Msa0210180:CDS | 40.0% | |
| TCAACTTCAACTTCCCAAGT+AGG | - | chr2_1:50193373-50193392 | Msa0210180:CDS | 40.0% | |
| GAGATTGGAAAGGTTGGAAT+AGG | - | chr2_1:50193415-50193434 | Msa0210180:CDS | 40.0% | |
| GCAGAAATTGGGTATGTTCT+AGG | - | chr2_1:50193585-50193604 | Msa0210180:intron | 40.0% | |
| !! | GTTCTAGGGTCTAAATACTG+GGG | - | chr2_1:50193600-50193619 | Msa0210180:intron | 40.0% |
| GGTCTAAATACTGGGGTAAA+GGG | - | chr2_1:50193607-50193626 | Msa0210180:intron | 40.0% | |
| CATTTGTTTCACAGCAAACG+TGG | + | chr2_1:50193637-50193656 | None:intergenic | 40.0% | |
| !! | CACGTTTGCTGTGAAACAAA+TGG | - | chr2_1:50193635-50193654 | Msa0210180:intron | 40.0% |
| !! | CAAAGAGTGCTTGAGAAAGT+TGG | - | chr2_1:50193732-50193751 | Msa0210180:intron | 40.0% |
| ! | GAAAGTTGGTTTCCAAAAGG+AGG | - | chr2_1:50193746-50193765 | Msa0210180:intron | 40.0% |
| ! | TGCTTATAATTTGGGACGGA+GGG | + | chr2_1:50194085-50194104 | None:intergenic | 40.0% |
| ! | TTGCTTATAATTTGGGACGG+AGG | + | chr2_1:50194086-50194105 | None:intergenic | 40.0% |
| TTGCTTATATTATGGGACGG+AGG | - | chr2_1:50194364-50194383 | Msa0210180:intron | 40.0% | |
| TGCTTATATTATGGGACGGA+GGG | - | chr2_1:50194365-50194384 | Msa0210180:intron | 40.0% | |
| CAATTAGACGAGTTGTGAAC+AGG | + | chr2_1:50194723-50194742 | None:intergenic | 40.0% | |
| ATGGTCTCAATTACAAACCC+TGG | + | chr2_1:50194849-50194868 | None:intergenic | 40.0% | |
| GTATGTGAGCTTCATAGGTT+TGG | - | chr2_1:50195357-50195376 | Msa0210180:intron | 40.0% | |
| TTATTCAAGTCAACCATGGC+AGG | - | chr2_1:50195395-50195414 | Msa0210180:intron | 40.0% | |
| AAGGGAAGTAAGGGATTTCA+AGG | + | chr2_1:50195437-50195456 | None:intergenic | 40.0% | |
| CAAGCAAGAAAAGGGAAGTA+AGG | + | chr2_1:50195447-50195466 | None:intergenic | 40.0% | |
| GTTGGGATCAAGCAAGAAAA+GGG | + | chr2_1:50195455-50195474 | None:intergenic | 40.0% | |
| AGTTGGGATCAAGCAAGAAA+AGG | + | chr2_1:50195456-50195475 | None:intergenic | 40.0% | |
| CAGAGTTAAAGGAAGTTGCA+TGG | + | chr2_1:50195491-50195510 | None:intergenic | 40.0% | |
| ATTCTCTCTTCTTTGTCACG+TGG | + | chr2_1:50195668-50195687 | None:intergenic | 40.0% | |
| ! | TTCTGACCTTGATGATCTCA+TGG | - | chr2_1:50195724-50195743 | Msa0210180:CDS | 40.0% |
| ! | ACCTTGATGATCTCATGGTA+TGG | - | chr2_1:50195729-50195748 | Msa0210180:CDS | 40.0% |
| TCCATACCATGAGATCATCA+AGG | + | chr2_1:50195733-50195752 | None:intergenic | 40.0% | |
| TGCATCAATGATCGTGCAAT+TGG | - | chr2_1:50195866-50195885 | Msa0210180:intron | 40.0% | |
| GCATCAATGATCGTGCAATT+GGG | - | chr2_1:50195867-50195886 | Msa0210180:intron | 40.0% | |
| AGGAACAAATGTGCAGAACT+TGG | - | chr2_1:50195928-50195947 | Msa0210180:intron | 40.0% | |
| !! | GGCTCTAAATATTGGGGTAA+AGG | - | chr2_1:50195961-50195980 | Msa0210180:intron | 40.0% |
| GTGAGTTGTCTTACTTGGAA+AGG | - | chr2_1:50196028-50196047 | Msa0210180:CDS | 40.0% | |
| ! | GCTTGAAGCTTTAGTTGATG+TGG | - | chr2_1:50196050-50196069 | Msa0210180:CDS | 40.0% |
| ! | TGTTGGGTCTCAAAGAGTTT+TGG | - | chr2_1:50196077-50196096 | Msa0210180:CDS | 40.0% |
| !!! | CAAAGAGTTTTGGAGAAAGC+TGG | - | chr2_1:50196087-50196106 | Msa0210180:CDS | 40.0% |
| ! | GAAAGCTGGTTTCCAAAAAG+AGG | - | chr2_1:50196101-50196120 | Msa0210180:CDS | 40.0% |
| TCCAAAAAGAGGGAGTTCTA+AGG | - | chr2_1:50196112-50196131 | Msa0210180:CDS | 40.0% | |
| ! | TCCTTAGAACTCCCTCTTTT+TGG | + | chr2_1:50196116-50196135 | None:intergenic | 40.0% |
| ! | TCAGCTAAGTGTGAGTGTTG+CGG | - | chr2_1:50193082-50193101 | Msa0210180:CDS | 45.0% |
| ! | TGAGTGTTGCGGCTTAAAAG+AGG | - | chr2_1:50193093-50193112 | Msa0210180:CDS | 45.0% |
| TGAGACAGATACCTAGGAGA+AGG | - | chr2_1:50193311-50193330 | Msa0210180:CDS | 45.0% | |
| ACTTCAACTTCCCAAGTAGG+TGG | - | chr2_1:50193376-50193395 | Msa0210180:CDS | 45.0% | |
| ACAGAGGAGATTGGAAAGGT+TGG | - | chr2_1:50193409-50193428 | Msa0210180:CDS | 45.0% | |
| CCATACCAAAAACGGAGTGA+TGG | + | chr2_1:50193446-50193465 | None:intergenic | 45.0% | |
| !!! | CCATCACTCCGTTTTTGGTA+TGG | - | chr2_1:50193443-50193462 | Msa0210180:intron | 45.0% |
| GGGTCTAAATACTGGGGTAA+AGG | - | chr2_1:50193606-50193625 | Msa0210180:intron | 45.0% | |
| GCTTGAAGCTCTTGTTGATG+TGG | - | chr2_1:50193695-50193714 | Msa0210180:intron | 45.0% | |
| TCCAAAAGGAGGGAGTTCTT+AGG | - | chr2_1:50193757-50193776 | Msa0210180:intron | 45.0% | |
| ! | TCCTAAGAACTCCCTCCTTT+TGG | + | chr2_1:50193761-50193780 | None:intergenic | 45.0% |
| CTCTTCTTTGTCACGTGGTT+TGG | + | chr2_1:50195663-50195682 | None:intergenic | 45.0% | |
| GGTCAGAAAGATTAAGGGGT+CGG | + | chr2_1:50195712-50195731 | None:intergenic | 45.0% | |
| GCAGAACTTGGCTATGTTCT+AGG | - | chr2_1:50195940-50195959 | Msa0210180:intron | 45.0% | |
| CACTTGTTTCACAACACACG+TGG | + | chr2_1:50195992-50196011 | None:intergenic | 45.0% | |
| CACGTGTGTTGTGAAACAAG+TGG | - | chr2_1:50195990-50196009 | Msa0210180:CDS | 45.0% | |
| CCATCAGCAACACAAACTGC+AGG | + | chr2_1:50193289-50193308 | None:intergenic | 50.0% | |
| ! | CCTGCAGTTTGTGTTGCTGA+TGG | - | chr2_1:50193286-50193305 | Msa0210180:CDS | 50.0% |
| ! | ACACGCCATCACTCCGTTTT+TGG | - | chr2_1:50193438-50193457 | Msa0210180:intron | 50.0% |
| AAGGGGTCGGAGTGTGATTT+GGG | + | chr2_1:50195699-50195718 | None:intergenic | 50.0% | |
| TAAGGGGTCGGAGTGTGATT+TGG | + | chr2_1:50195700-50195719 | None:intergenic | 50.0% | |
| AAGTGGCCAAGTTCTGCTCT+TGG | - | chr2_1:50195765-50195784 | Msa0210180:CDS | 50.0% | |
| AGTGGCCAAGTTCTGCTCTT+GGG | - | chr2_1:50195766-50195785 | Msa0210180:CDS | 50.0% | |
| GAGTTCCCAAGAGCAGAACT+TGG | + | chr2_1:50195774-50195793 | None:intergenic | 50.0% | |
| GTTGATGCCATCATCCTTGC+TGG | + | chr2_1:50195801-50195820 | None:intergenic | 50.0% | |
| CTTCATGTCTCTGCCTGCCA+TGG | + | chr2_1:50195411-50195430 | None:intergenic | 55.0% | |
| TTGGGAACTCTACGCCAGCA+AGG | - | chr2_1:50195784-50195803 | Msa0210180:CDS | 55.0% | |
| CTCTACGCCAGCAAGGATGA+TGG | - | chr2_1:50195791-50195810 | Msa0210180:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 50193070 | 50196308 | 50193070 | ID=Msa0210180;Name=Msa0210180 |
| chr2_1 | mRNA | 50193070 | 50196308 | 50193070 | ID=Msa0210180-mRNA-1;Parent=Msa0210180;Name=Msa0210180-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0|0|1|0.5|1|3|0|312 |
| chr2_1 | exon | 50195988 | 50196308 | 50195988 | ID=Msa0210180-mRNA-1:exon:13848;Parent=Msa0210180-mRNA-1 |
| chr2_1 | exon | 50195597 | 50195835 | 50195597 | ID=Msa0210180-mRNA-1:exon:13847;Parent=Msa0210180-mRNA-1 |
| chr2_1 | exon | 50193070 | 50193448 | 50193070 | ID=Msa0210180-mRNA-1:exon:13846;Parent=Msa0210180-mRNA-1 |
| chr2_1 | CDS | 50195988 | 50196308 | 50195988 | ID=Msa0210180-mRNA-1:cds;Parent=Msa0210180-mRNA-1 |
| chr2_1 | CDS | 50195597 | 50195835 | 50195597 | ID=Msa0210180-mRNA-1:cds;Parent=Msa0210180-mRNA-1 |
| chr2_1 | CDS | 50193070 | 50193448 | 50193070 | ID=Msa0210180-mRNA-1:cds;Parent=Msa0210180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
