Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0210670 | XP_003595830.2 | 87.588 | 427 | 20 | 1 | 27 | 420 | 1 | 427 | 0.0 | 768 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0210670 | sp|Q9SYJ8|SOK1_ARATH | 36.386 | 404 | 176 | 13 | 31 | 409 | 7 | 354 | 1.53e-64 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0210670 | G7IQN5 | 87.588 | 427 | 20 | 1 | 27 | 420 | 1 | 427 | 0.0 | 768 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0210670 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0210670 | MtrunA17_Chr2g0309101 | 87.588 | 427 | 20 | 1 | 27 | 420 | 1 | 427 | 0.0 | 768 |
| Msa0210670 | MtrunA17_Chr2g0320281 | 45.055 | 91 | 49 | 1 | 35 | 125 | 31 | 120 | 5.17e-21 | 95.1 |
| Msa0210670 | MtrunA17_Chr4g0030891 | 41.837 | 98 | 56 | 1 | 28 | 125 | 26 | 122 | 9.24e-21 | 93.6 |
| Msa0210670 | MtrunA17_Chr4g0028131 | 45.556 | 90 | 48 | 1 | 36 | 125 | 31 | 119 | 3.37e-20 | 92.8 |
| Msa0210670 | MtrunA17_Chr1g0212601 | 41.121 | 107 | 59 | 4 | 24 | 129 | 3 | 106 | 9.05e-18 | 82.4 |
| Msa0210670 | MtrunA17_Chr8g0382651 | 41.000 | 100 | 57 | 2 | 27 | 125 | 22 | 120 | 2.33e-17 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0210670 | AT1G05577.1 | 36.386 | 404 | 176 | 13 | 31 | 409 | 7 | 354 | 1.56e-65 | 214 |
| Msa0210670 | AT2G28150.1 | 46.739 | 92 | 48 | 1 | 34 | 125 | 31 | 121 | 2.32e-23 | 102 |
| Msa0210670 | AT3G46110.2 | 43.269 | 104 | 58 | 1 | 22 | 125 | 5 | 107 | 1.94e-22 | 97.4 |
| Msa0210670 | AT3G46110.1 | 43.269 | 104 | 58 | 1 | 22 | 125 | 5 | 107 | 2.20e-22 | 97.8 |
| Msa0210670 | AT5G59790.2 | 31.737 | 167 | 102 | 5 | 35 | 191 | 45 | 209 | 1.46e-21 | 96.3 |
| Msa0210670 | AT5G59790.1 | 31.737 | 167 | 102 | 5 | 35 | 191 | 45 | 209 | 1.46e-21 | 96.7 |
| Msa0210670 | AT5G10150.1 | 39.474 | 114 | 67 | 2 | 27 | 140 | 36 | 147 | 2.61e-21 | 95.9 |
| Msa0210670 | AT5G10150.2 | 39.823 | 113 | 66 | 2 | 27 | 139 | 36 | 146 | 7.68e-21 | 94.0 |
Find 72 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGGTCAGCTAGGTGCTT+TGG | 0.272991 | 2_1:-51007352 | Msa0210670:CDS |
| AGAGAGACAAAGATCTCTTT+TGG | 0.288400 | 2_1:-51009407 | Msa0210670:CDS |
| GAGGGTCAGCTAGGTGCTTT+GGG | 0.306723 | 2_1:-51007351 | Msa0210670:CDS |
| CATGATCAAAATGAACATTA+TGG | 0.310101 | 2_1:-51007313 | Msa0210670:CDS |
| CAAATCCACACTACCCCTTT+TGG | 0.310924 | 2_1:-51008200 | Msa0210670:intron |
| ATATGTGTGGCAGGATTTAA+TGG | 0.312486 | 2_1:-51008276 | Msa0210670:CDS |
| GACGTATTCATTATCAGAAA+TGG | 0.358743 | 2_1:+51008235 | None:intergenic |
| TAGGACCAAGCAAAGGATTC+AGG | 0.359159 | 2_1:+51008451 | None:intergenic |
| CAAACTTCTTATAAACCATT+TGG | 0.361784 | 2_1:-51006805 | Msa0210670:CDS |
| GGCACATTAATAGGCTCCTT+AGG | 0.392655 | 2_1:+51007412 | None:intergenic |
| ACGTATTCATTATCAGAAAT+GGG | 0.408507 | 2_1:+51008236 | None:intergenic |
| CTAGGTGCTTTGGGACTGCT+TGG | 0.417878 | 2_1:-51007342 | Msa0210670:CDS |
| TCAGTTACTTACGAGCAAAT+TGG | 0.421789 | 2_1:+51006778 | None:intergenic |
| CAAAAGGTGGAGAAGTTAGA+AGG | 0.438816 | 2_1:-51009153 | Msa0210670:CDS |
| GCACATTAATAGGCTCCTTA+GGG | 0.443875 | 2_1:+51007413 | None:intergenic |
| GATTCTTCTTCTGATAAAGA+TGG | 0.455541 | 2_1:+51007906 | None:intergenic |
| TGTGGATTTGTGATCCTTTG+AGG | 0.457496 | 2_1:+51008213 | None:intergenic |
| ACTTCTTATAAACCATTTGG+TGG | 0.460136 | 2_1:-51006802 | Msa0210670:CDS |
| ATGATTCAACAACCTCTTGT+AGG | 0.473719 | 2_1:+51008432 | None:intergenic |
| AAAGATATTAAGAGATGGCT+TGG | 0.473793 | 2_1:-51008496 | Msa0210670:intron |
| GTTCTTCATCTTGCTCGAAA+CGG | 0.488480 | 2_1:-51009067 | Msa0210670:CDS |
| TGCTCAGAAAATTGCCCCTA+AGG | 0.491836 | 2_1:-51007428 | Msa0210670:CDS |
| CATGACCACCCATGTGACTA+AGG | 0.493290 | 2_1:+51009113 | None:intergenic |
| CATAATTTGATGAGTAAGAA+GGG | 0.494107 | 2_1:-51007660 | Msa0210670:CDS |
| TGATAAAGTACATACCAAAA+GGG | 0.495189 | 2_1:+51008186 | None:intergenic |
| GAGCAAATTGGTCCACCAAA+TGG | 0.501260 | 2_1:+51006790 | None:intergenic |
| ACAAGCTAGGAGGGTCAGCT+AGG | 0.501758 | 2_1:-51007360 | Msa0210670:CDS |
| TCATAATTTGATGAGTAAGA+AGG | 0.513194 | 2_1:-51007661 | Msa0210670:CDS |
| CAAGAGTGGATATGTGTGGC+AGG | 0.519703 | 2_1:-51008285 | Msa0210670:CDS |
| AAATCAAGCATGGAAACAAA+AGG | 0.522656 | 2_1:-51009169 | Msa0210670:CDS |
| AGAAATCAGTCAGGATTCGT+TGG | 0.523001 | 2_1:-51007829 | Msa0210670:CDS |
| AGATGGCTTGGTGAAGTGAG+AGG | 0.523481 | 2_1:-51008484 | Msa0210670:CDS |
| ACCTACCTGAATCCTTTGCT+TGG | 0.529099 | 2_1:-51008456 | Msa0210670:CDS |
| AGAGATCTTTGTCTCTCTGC+CGG | 0.533661 | 2_1:+51009412 | None:intergenic |
| AATGTTATCAGAAATCAGTC+AGG | 0.538149 | 2_1:-51007838 | Msa0210670:CDS |
| GAGATGAAATAATCAAGAGC+AGG | 0.544676 | 2_1:-51006852 | Msa0210670:CDS |
| AAAATGAACATTATGGAGCC+AGG | 0.547597 | 2_1:-51007306 | Msa0210670:intron |
| TAAGGAGCCTATTAATGTGC+CGG | 0.548310 | 2_1:-51007410 | Msa0210670:CDS |
| CTTGAAAAGATATTAAGAGA+TGG | 0.548408 | 2_1:-51008501 | Msa0210670:intron |
| ATCAAATTATGATACAAAGA+AGG | 0.549252 | 2_1:+51007672 | None:intergenic |
| AAACACATGAAGTCTTGTAA+AGG | 0.559207 | 2_1:-51006004 | Msa0210670:CDS |
| AAGTCTTGTAAAGGAATGAA+AGG | 0.559264 | 2_1:-51005995 | Msa0210670:CDS |
| TGTAAAGGAATGAAAGGCAT+GGG | 0.564737 | 2_1:-51005989 | Msa0210670:CDS |
| AAAAGGGCTGAGATTTGTAA+AGG | 0.565816 | 2_1:-51007385 | Msa0210670:CDS |
| GATAATGAATACGTCCTCAA+AGG | 0.574396 | 2_1:-51008227 | Msa0210670:CDS |
| ATTTGTAAAGGAGACAAGCT+AGG | 0.576650 | 2_1:-51007373 | Msa0210670:CDS |
| CGTATTCATTATCAGAAATG+GGG | 0.578739 | 2_1:+51008237 | None:intergenic |
| CCTTTGCTTGGTCCTACAAG+AGG | 0.578853 | 2_1:-51008444 | Msa0210670:intron |
| ACATACCAAAAGGGGTAGTG+TGG | 0.583512 | 2_1:+51008195 | None:intergenic |
| TGAAGTTGTACAAGTTGAAG+AGG | 0.587754 | 2_1:-51007952 | Msa0210670:CDS |
| TTGTAAAGGAATGAAAGGCA+TGG | 0.590138 | 2_1:-51005990 | Msa0210670:CDS |
| GTTGATGATGCAGGCAATGT+GGG | 0.595370 | 2_1:-51006054 | Msa0210670:intron |
| AATCTACTTCCTTAGTCACA+TGG | 0.596987 | 2_1:-51009122 | Msa0210670:CDS |
| GTAAAGGAGACAAGCTAGGA+GGG | 0.602767 | 2_1:-51007369 | Msa0210670:CDS |
| AAGTTCATCAAAATCAAGCA+TGG | 0.603008 | 2_1:-51009179 | Msa0210670:CDS |
| GATAAAGTACATACCAAAAG+GGG | 0.611244 | 2_1:+51008187 | None:intergenic |
| ATCTACTTCCTTAGTCACAT+GGG | 0.612405 | 2_1:-51009121 | Msa0210670:CDS |
| AAGCTGTGTTTCCTCAGCAA+TGG | 0.615582 | 2_1:+51005952 | None:intergenic |
| CACATTAATAGGCTCCTTAG+GGG | 0.618248 | 2_1:+51007414 | None:intergenic |
| TCAAGCATGGAAACAAAAGG+TGG | 0.631710 | 2_1:-51009166 | Msa0210670:CDS |
| TGAAGAACACGAATGAGATG+AGG | 0.633710 | 2_1:+51009082 | None:intergenic |
| AACTATAGGAGGTACAAGAG+TGG | 0.640091 | 2_1:-51008299 | Msa0210670:intron |
| GTATTCATTATCAGAAATGG+GGG | 0.640428 | 2_1:+51008238 | None:intergenic |
| TGTAAAGGAGACAAGCTAGG+AGG | 0.643651 | 2_1:-51007370 | Msa0210670:CDS |
| CGAAACGGTGTTTATCTCAG+AGG | 0.652327 | 2_1:-51009052 | Msa0210670:intron |
| TTCAGCTACAACCATTGCTG+AGG | 0.657539 | 2_1:-51005963 | Msa0210670:CDS |
| TTGGATTGGTTGTGGAACTG+TGG | 0.657832 | 2_1:-51007485 | Msa0210670:CDS |
| TACTTCCTTAGTCACATGGG+TGG | 0.667081 | 2_1:-51009118 | Msa0210670:CDS |
| ACCAAGCAAAGGATTCAGGT+AGG | 0.685603 | 2_1:+51008455 | None:intergenic |
| GGTACAAGAGTGGATATGTG+TGG | 0.687025 | 2_1:-51008289 | Msa0210670:CDS |
| AGTTGATGATGCAGGCAATG+TGG | 0.692418 | 2_1:-51006055 | Msa0210670:intron |
| CCTCTTGTAGGACCAAGCAA+AGG | 0.696251 | 2_1:+51008444 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGTGAATAAATAAAAAT+GGG | + | chr2_1:51007175-51007194 | None:intergenic | 10.0% |
| !! | TTAATGTGAATAAATAAAAA+TGG | + | chr2_1:51007176-51007195 | None:intergenic | 10.0% |
| !! | TATAATTATTTGAATCATAG+TGG | - | chr2_1:51005974-51005993 | Msa0210670:CDS | 15.0% |
| !! | AGAACAATTGAATAAAAATA+TGG | + | chr2_1:51006313-51006332 | None:intergenic | 15.0% |
| !! | AAAATTACATAATAAGGTAA+TGG | + | chr2_1:51007239-51007258 | None:intergenic | 15.0% |
| !! | TTAGCAAAAATTACATAATA+AGG | + | chr2_1:51007245-51007264 | None:intergenic | 15.0% |
| !! | TAATTAAAACATTATTTGGT+TGG | - | chr2_1:51008390-51008409 | Msa0210670:intron | 15.0% |
| !! | CAAGGAAATAATGATTAATA+AGG | + | chr2_1:51006917-51006936 | None:intergenic | 20.0% |
| !! | AGTTAAAGGTTAAAAAAATG+AGG | + | chr2_1:51006959-51006978 | None:intergenic | 20.0% |
| !! | GGAAATACATATATAGTTAA+AGG | + | chr2_1:51006973-51006992 | None:intergenic | 20.0% |
| !! | TTAGTTGCAAAAATTGATTA+TGG | + | chr2_1:51006994-51007013 | None:intergenic | 20.0% |
| !! | ACTAACAATTATTGAACTAT+AGG | - | chr2_1:51007009-51007028 | Msa0210670:intron | 20.0% |
| !!! | TCACATTAATATTTTGAGTA+TGG | - | chr2_1:51007187-51007206 | Msa0210670:intron | 20.0% |
| !! | ATCAAATTATGATACAAAGA+AGG | + | chr2_1:51007653-51007672 | None:intergenic | 20.0% |
| !! | ATTCAAAACCATGTTTAAAA+GGG | + | chr2_1:51008244-51008263 | None:intergenic | 20.0% |
| !!! | ATGAAAATTTTTGGTCTTAT+AGG | - | chr2_1:51008630-51008649 | Msa0210670:intron | 20.0% |
| !!! | CCATTTTTTCAACTTAATAA+TGG | + | chr2_1:51008749-51008768 | None:intergenic | 20.0% |
| !!! | CCATTATTAAGTTGAAAAAA+TGG | - | chr2_1:51008746-51008765 | Msa0210670:intron | 20.0% |
| ! | TTTATTCAATTGTTCTGTAC+TGG | - | chr2_1:51006317-51006336 | Msa0210670:intron | 25.0% |
| ! | CTTGAAAAGATATTAAGAGA+TGG | - | chr2_1:51006821-51006840 | Msa0210670:CDS | 25.0% |
| ! | AAAAAATGAGGTTGAGAAAA+TGG | + | chr2_1:51006947-51006966 | None:intergenic | 25.0% |
| ! | AACAATTATTGAACTATAGG+AGG | - | chr2_1:51007012-51007031 | Msa0210670:intron | 25.0% |
| ! | ACGTATTCATTATCAGAAAT+GGG | + | chr2_1:51007089-51007108 | None:intergenic | 25.0% |
| ! | TGATAAAGTACATACCAAAA+GGG | + | chr2_1:51007139-51007158 | None:intergenic | 25.0% |
| ! | ATGATAAAGTACATACCAAA+AGG | + | chr2_1:51007140-51007159 | None:intergenic | 25.0% |
| ! | TCATAATTTGATGAGTAAGA+AGG | - | chr2_1:51007661-51007680 | Msa0210670:CDS | 25.0% |
| ! | CATAATTTGATGAGTAAGAA+GGG | - | chr2_1:51007662-51007681 | Msa0210670:CDS | 25.0% |
| ! | CATGATCAAAATGAACATTA+TGG | - | chr2_1:51008009-51008028 | Msa0210670:intron | 25.0% |
| ! | GATTATGAATATTCTAAGCA+TGG | + | chr2_1:51008217-51008236 | None:intergenic | 25.0% |
| ! | GATTCAAAACCATGTTTAAA+AGG | + | chr2_1:51008245-51008264 | None:intergenic | 25.0% |
| !!! | TTTTAAGAATGGCTTTTAAC+AGG | + | chr2_1:51008267-51008286 | None:intergenic | 25.0% |
| ! | TGTTAAAAGCCATTCTTAAA+AGG | - | chr2_1:51008266-51008285 | Msa0210670:CDS | 25.0% |
| ! | GTTAAAAGCCATTCTTAAAA+GGG | - | chr2_1:51008267-51008286 | Msa0210670:CDS | 25.0% |
| ! | CAAACTTCTTATAAACCATT+TGG | - | chr2_1:51008517-51008536 | Msa0210670:intron | 25.0% |
| ! | TTGAGTAAACTTCAATTGTT+TGG | - | chr2_1:51008574-51008593 | Msa0210670:intron | 25.0% |
| ! | GATTTCAACTATGAAATGTT+AGG | - | chr2_1:51008596-51008615 | Msa0210670:intron | 25.0% |
| !! | AAACTGTGCATGAAAATTTT+TGG | - | chr2_1:51008621-51008640 | Msa0210670:intron | 25.0% |
| !!! | AAAATTTTTGGTCTTATAGG+TGG | - | chr2_1:51008633-51008652 | Msa0210670:intron | 25.0% |
| !!! | TTAAGTTGAAAAAATGGAAG+TGG | - | chr2_1:51008752-51008771 | Msa0210670:intron | 25.0% |
| ! | TAATGTGTCTTTACACATAT+GGG | + | chr2_1:51009199-51009218 | None:intergenic | 25.0% |
| ! | TTAATGTGTCTTTACACATA+TGG | + | chr2_1:51009200-51009219 | None:intergenic | 25.0% |
| ACTAAGAGAAACAACTAACA+TGG | + | chr2_1:51005947-51005966 | None:intergenic | 30.0% | |
| !! | TCAAAAGAAGTGTCATTGTT+TGG | - | chr2_1:51006061-51006080 | Msa0210670:intron | 30.0% |
| AAGTTCATCAAAATCAAGCA+TGG | - | chr2_1:51006143-51006162 | Msa0210670:intron | 30.0% | |
| AAATCAAGCATGGAAACAAA+AGG | - | chr2_1:51006153-51006172 | Msa0210670:intron | 30.0% | |
| TCACACATAGTTCAAAATTG+CGG | - | chr2_1:51006405-51006424 | Msa0210670:intron | 30.0% | |
| !! | CCTCTAAAACCTTTATATTG+CGG | + | chr2_1:51006438-51006457 | None:intergenic | 30.0% |
| GTGTACTAAATTGTGTATCA+CGG | + | chr2_1:51006642-51006661 | None:intergenic | 30.0% | |
| AATTGCAGATCATAGACAAT+AGG | + | chr2_1:51006708-51006727 | None:intergenic | 30.0% | |
| AAAGATATTAAGAGATGGCT+TGG | - | chr2_1:51006826-51006845 | Msa0210670:CDS | 30.0% | |
| GTATTCATTATCAGAAATGG+GGG | + | chr2_1:51007087-51007106 | None:intergenic | 30.0% | |
| CGTATTCATTATCAGAAATG+GGG | + | chr2_1:51007088-51007107 | None:intergenic | 30.0% | |
| GACGTATTCATTATCAGAAA+TGG | + | chr2_1:51007090-51007109 | None:intergenic | 30.0% | |
| GATAAAGTACATACCAAAAG+GGG | + | chr2_1:51007138-51007157 | None:intergenic | 30.0% | |
| TAGTTTCTGCATTAGTACAA+AGG | + | chr2_1:51007307-51007326 | None:intergenic | 30.0% | |
| GATTCTTCTTCTGATAAAGA+TGG | + | chr2_1:51007419-51007438 | None:intergenic | 30.0% | |
| AATGTTATCAGAAATCAGTC+AGG | - | chr2_1:51007484-51007503 | Msa0210670:CDS | 30.0% | |
| ! | TTGAAGAAGAGAAGCTTTTA+GGG | - | chr2_1:51007567-51007586 | Msa0210670:intron | 30.0% |
| TGACTAGTGTGTTCAAAAAT+TGG | - | chr2_1:51007818-51007837 | Msa0210670:CDS | 30.0% | |
| AGTGTGTTCAAAAATTGGAT+TGG | - | chr2_1:51007823-51007842 | Msa0210670:CDS | 30.0% | |
| !! | TTCAAAAATTGGATTGGTTG+TGG | - | chr2_1:51007829-51007848 | Msa0210670:CDS | 30.0% |
| TATTAATGTGCCGGAAAAAA+GGG | - | chr2_1:51007921-51007940 | Msa0210670:CDS | 30.0% | |
| TTATGATACAATTTCTCACC+TGG | + | chr2_1:51008037-51008056 | None:intergenic | 30.0% | |
| AATCCAATGCTACTATGATT+GGG | - | chr2_1:51008298-51008317 | Msa0210670:intron | 30.0% | |
| ! | TTTTACAGAAAAAGCTGTGA+TGG | - | chr2_1:51008448-51008467 | Msa0210670:CDS | 30.0% |
| ACTTCTTATAAACCATTTGG+TGG | - | chr2_1:51008520-51008539 | Msa0210670:intron | 30.0% | |
| TTATGATGTTTACCAACTCT+TGG | - | chr2_1:51009081-51009100 | Msa0210670:CDS | 30.0% | |
| GCATCATCAACTACTATTTA+TGG | + | chr2_1:51009259-51009278 | None:intergenic | 30.0% | |
| !! | TAAATAGTAGTTGATGATGC+AGG | - | chr2_1:51009259-51009278 | Msa0210670:intron | 30.0% |
| ! | AAACACATGAAGTCTTGTAA+AGG | - | chr2_1:51009318-51009337 | Msa0210670:intron | 30.0% |
| ! | AAGTCTTGTAAAGGAATGAA+AGG | - | chr2_1:51009327-51009346 | Msa0210670:intron | 30.0% |
| ! | AGAGAGACAAAGATCTCTTT+TGG | - | chr2_1:51005915-51005934 | Msa0210670:CDS | 35.0% |
| ! | GAGAGACAAAGATCTCTTTT+GGG | - | chr2_1:51005916-51005935 | Msa0210670:CDS | 35.0% |
| !!! | GACACTTCTTTTGAAACACA+AGG | + | chr2_1:51006055-51006074 | None:intergenic | 35.0% |
| !! | GAAGTGTCATTGTTTGGTTT+TGG | - | chr2_1:51006067-51006086 | Msa0210670:intron | 35.0% |
| TGTCATTGTTGAGTTTGTGT+TGG | - | chr2_1:51006090-51006109 | Msa0210670:intron | 35.0% | |
| AATCTACTTCCTTAGTCACA+TGG | - | chr2_1:51006200-51006219 | Msa0210670:intron | 35.0% | |
| ATCTACTTCCTTAGTCACAT+GGG | - | chr2_1:51006201-51006220 | Msa0210670:intron | 35.0% | |
| !! | CCGCAATATAAAGGTTTTAG+AGG | - | chr2_1:51006435-51006454 | Msa0210670:intron | 35.0% |
| ACACAAGTTTGTCAAATAGC+TGG | - | chr2_1:51006658-51006677 | Msa0210670:intron | 35.0% | |
| ATGATTCAACAACCTCTTGT+AGG | + | chr2_1:51006893-51006912 | None:intergenic | 35.0% | |
| !! | TGAGAAAATGGACTAAAGCA+AGG | + | chr2_1:51006935-51006954 | None:intergenic | 35.0% |
| ATATGTGTGGCAGGATTTAA+TGG | - | chr2_1:51007046-51007065 | Msa0210670:intron | 35.0% | |
| GATAATGAATACGTCCTCAA+AGG | - | chr2_1:51007095-51007114 | Msa0210670:intron | 35.0% | |
| ! | TGAAGTTGTACAAGTTGAAG+AGG | - | chr2_1:51007370-51007389 | Msa0210670:CDS | 35.0% |
| ! | GTTGAAGAAGAGAAGCTTTT+AGG | - | chr2_1:51007566-51007585 | Msa0210670:intron | 35.0% |
| !! | CTTTTAGGGAATGGAAAAGA+AGG | - | chr2_1:51007581-51007600 | Msa0210670:intron | 35.0% |
| GAGTAAGAAGGGTAAAAAGA+TGG | - | chr2_1:51007673-51007692 | Msa0210670:CDS | 35.0% | |
| GTAGAAAAAGTTGAATCAGG+AGG | + | chr2_1:51007730-51007749 | None:intergenic | 35.0% | |
| GGAGTAGAAAAAGTTGAATC+AGG | + | chr2_1:51007733-51007752 | None:intergenic | 35.0% | |
| GCTTCTTATCTTAGTGAATG+AGG | + | chr2_1:51007785-51007804 | None:intergenic | 35.0% | |
| !!! | CTTTTTTCCGGCACATTAAT+AGG | + | chr2_1:51007922-51007941 | None:intergenic | 35.0% |
| CTATTAATGTGCCGGAAAAA+AGG | - | chr2_1:51007920-51007939 | Msa0210670:CDS | 35.0% | |
| AAAAGGGCTGAGATTTGTAA+AGG | - | chr2_1:51007937-51007956 | Msa0210670:CDS | 35.0% | |
| ATTTGTAAAGGAGACAAGCT+AGG | - | chr2_1:51007949-51007968 | Msa0210670:CDS | 35.0% | |
| AAAATGAACATTATGGAGCC+AGG | - | chr2_1:51008016-51008035 | Msa0210670:intron | 35.0% | |
| CAACTGCATACGCAATTTAA+AGG | + | chr2_1:51008078-51008097 | None:intergenic | 35.0% | |
| TTAAATTGCGTATGCAGTTG+CGG | - | chr2_1:51008078-51008097 | Msa0210670:intron | 35.0% | |
| ! | AATCGTGACCCTTTTAAACA+TGG | - | chr2_1:51008233-51008252 | Msa0210670:CDS | 35.0% |
| !! | CACAAACACCCTTTTAAGAA+TGG | + | chr2_1:51008278-51008297 | None:intergenic | 35.0% |
| GAATCCAATGCTACTATGAT+TGG | - | chr2_1:51008297-51008316 | Msa0210670:intron | 35.0% | |
| TAACCCAATCATAGTAGCAT+TGG | + | chr2_1:51008304-51008323 | None:intergenic | 35.0% | |
| TACATTAGACATACGTCACT+AGG | - | chr2_1:51008328-51008347 | Msa0210670:intron | 35.0% | |
| GAGATGAAATAATCAAGAGC+AGG | - | chr2_1:51008470-51008489 | Msa0210670:CDS | 35.0% | |
| TCAGTTACTTACGAGCAAAT+TGG | + | chr2_1:51008547-51008566 | None:intergenic | 35.0% | |
| CGTGTCTATCAATGTTTGAT+AGG | + | chr2_1:51008703-51008722 | None:intergenic | 35.0% | |
| GTGTTGTCAATATCAGACAT+TGG | - | chr2_1:51008797-51008816 | Msa0210670:intron | 35.0% | |
| TTCCAACAGAAAAGCCAATA+AGG | - | chr2_1:51008959-51008978 | Msa0210670:intron | 35.0% | |
| ! | ATGTGTTTGTGCATTTTCTC+AGG | + | chr2_1:51009306-51009325 | None:intergenic | 35.0% |
| TTGTAAAGGAATGAAAGGCA+TGG | - | chr2_1:51009332-51009351 | Msa0210670:intron | 35.0% | |
| ! | TGTAAAGGAATGAAAGGCAT+GGG | - | chr2_1:51009333-51009352 | Msa0210670:intron | 35.0% |
| TCAAGCATGGAAACAAAAGG+TGG | - | chr2_1:51006156-51006175 | Msa0210670:intron | 40.0% | |
| CAAAAGGTGGAGAAGTTAGA+AGG | - | chr2_1:51006169-51006188 | Msa0210670:intron | 40.0% | |
| TGAAGAACACGAATGAGATG+AGG | + | chr2_1:51006243-51006262 | None:intergenic | 40.0% | |
| GTTCTTCATCTTGCTCGAAA+CGG | - | chr2_1:51006255-51006274 | Msa0210670:intron | 40.0% | |
| GGTACACAACCGCAATATAA+AGG | - | chr2_1:51006426-51006445 | Msa0210670:intron | 40.0% | |
| ! | AACTATAGGAGGTACAAGAG+TGG | - | chr2_1:51007023-51007042 | Msa0210670:intron | 40.0% |
| TATCAGAAATGGGGGTTATG+AGG | + | chr2_1:51007079-51007098 | None:intergenic | 40.0% | |
| TGTGGATTTGTGATCCTTTG+AGG | + | chr2_1:51007112-51007131 | None:intergenic | 40.0% | |
| AGAAATCAGTCAGGATTCGT+TGG | - | chr2_1:51007493-51007512 | Msa0210670:CDS | 40.0% | |
| !!! | GGATTCGTTGGTTTTTAGCT+CGG | - | chr2_1:51007505-51007524 | Msa0210670:CDS | 40.0% |
| !! | GAAGAGAAGCTTTTAGGGAA+TGG | - | chr2_1:51007572-51007591 | Msa0210670:intron | 40.0% |
| CACATTAATAGGCTCCTTAG+GGG | + | chr2_1:51007911-51007930 | None:intergenic | 40.0% | |
| GCACATTAATAGGCTCCTTA+GGG | + | chr2_1:51007912-51007931 | None:intergenic | 40.0% | |
| TAAGGAGCCTATTAATGTGC+CGG | - | chr2_1:51007912-51007931 | Msa0210670:CDS | 40.0% | |
| !!! | CAAATCTCAGCCCTTTTTTC+CGG | + | chr2_1:51007934-51007953 | None:intergenic | 40.0% |
| TTACACTGTGAACCAAACTG+TGG | - | chr2_1:51008101-51008120 | Msa0210670:intron | 40.0% | |
| CCACAATACAAACCATTTCG+AGG | + | chr2_1:51008167-51008186 | None:intergenic | 40.0% | |
| ! | CCTCGAAATGGTTTGTATTG+TGG | - | chr2_1:51008164-51008183 | Msa0210670:intron | 40.0% |
| AACACTAACACACACTGACA+CGG | - | chr2_1:51008829-51008848 | Msa0210670:intron | 40.0% | |
| !! | CTAAAGTGTCGAAGCTACTT+AGG | - | chr2_1:51008865-51008884 | Msa0210670:intron | 40.0% |
| !!! | GACCTTATTGGCTTTTCTGT+TGG | + | chr2_1:51008964-51008983 | None:intergenic | 40.0% |
| CAGCAGAATCTTGACCTTAT+TGG | + | chr2_1:51008976-51008995 | None:intergenic | 40.0% | |
| CAATAAGGTCAAGATTCTGC+TGG | - | chr2_1:51008974-51008993 | Msa0210670:intron | 40.0% | |
| TTTACCAACTCTTGGTTGCA+TGG | - | chr2_1:51009089-51009108 | Msa0210670:CDS | 40.0% | |
| TTACCAACTCTTGGTTGCAT+GGG | - | chr2_1:51009090-51009109 | Msa0210670:CDS | 40.0% | |
| AGAGATCTTTGTCTCTCTGC+CGG | + | chr2_1:51005913-51005932 | None:intergenic | 45.0% | |
| TACTTCCTTAGTCACATGGG+TGG | - | chr2_1:51006204-51006223 | Msa0210670:intron | 45.0% | |
| CGAAACGGTGTTTATCTCAG+AGG | - | chr2_1:51006270-51006289 | Msa0210670:intron | 45.0% | |
| ACCTACCTGAATCCTTTGCT+TGG | - | chr2_1:51006866-51006885 | Msa0210670:CDS | 45.0% | |
| ACCAAGCAAAGGATTCAGGT+AGG | + | chr2_1:51006870-51006889 | None:intergenic | 45.0% | |
| TAGGACCAAGCAAAGGATTC+AGG | + | chr2_1:51006874-51006893 | None:intergenic | 45.0% | |
| GGTACAAGAGTGGATATGTG+TGG | - | chr2_1:51007033-51007052 | Msa0210670:intron | 45.0% | |
| ! | CAAATCCACACTACCCCTTT+TGG | - | chr2_1:51007122-51007141 | Msa0210670:intron | 45.0% |
| ACATACCAAAAGGGGTAGTG+TGG | + | chr2_1:51007130-51007149 | None:intergenic | 45.0% | |
| !!! | TTTTAGCTCGGACAGGTCAT+CGG | - | chr2_1:51007517-51007536 | Msa0210670:CDS | 45.0% |
| TGAGACGATGTTGACGATGT+TGG | + | chr2_1:51007754-51007773 | None:intergenic | 45.0% | |
| !! | TTGGATTGGTTGTGGAACTG+TGG | - | chr2_1:51007837-51007856 | Msa0210670:CDS | 45.0% |
| ! | TAGGGGCAATTTTCTGAGCA+GGG | + | chr2_1:51007894-51007913 | None:intergenic | 45.0% |
| ! | TTAGGGGCAATTTTCTGAGC+AGG | + | chr2_1:51007895-51007914 | None:intergenic | 45.0% |
| TGCTCAGAAAATTGCCCCTA+AGG | - | chr2_1:51007894-51007913 | Msa0210670:CDS | 45.0% | |
| GGCACATTAATAGGCTCCTT+AGG | + | chr2_1:51007913-51007932 | None:intergenic | 45.0% | |
| TGTAAAGGAGACAAGCTAGG+AGG | - | chr2_1:51007952-51007971 | Msa0210670:CDS | 45.0% | |
| GTAAAGGAGACAAGCTAGGA+GGG | - | chr2_1:51007953-51007972 | Msa0210670:CDS | 45.0% | |
| CAATTGCATCAGCCACAGTT+TGG | + | chr2_1:51008116-51008135 | None:intergenic | 45.0% | |
| GCAACTGTATTCTGTTGCAG+AGG | - | chr2_1:51008141-51008160 | Msa0210670:intron | 45.0% | |
| GAGCAAATTGGTCCACCAAA+TGG | + | chr2_1:51008535-51008554 | None:intergenic | 45.0% | |
| !! | AGTTGATGATGCAGGCAATG+TGG | - | chr2_1:51009267-51009286 | Msa0210670:intron | 45.0% |
| !! | GTTGATGATGCAGGCAATGT+GGG | - | chr2_1:51009268-51009287 | Msa0210670:intron | 45.0% |
| TTCAGCTACAACCATTGCTG+AGG | - | chr2_1:51009359-51009378 | Msa0210670:intron | 45.0% | |
| AAGCTGTGTTTCCTCAGCAA+TGG | + | chr2_1:51009373-51009392 | None:intergenic | 45.0% | |
| !! | ATATATATATAATTAACAAA+AGG | - | chr2_1:51006012-51006031 | Msa0210670:CDS | 5.0% |
| !! | TATATATATAATTAACAAAA+GGG | - | chr2_1:51006013-51006032 | Msa0210670:CDS | 5.0% |
| !! | AATTTAATTAAAACATTATT+TGG | - | chr2_1:51008386-51008405 | Msa0210670:intron | 5.0% |
| CATGACCACCCATGTGACTA+AGG | + | chr2_1:51006212-51006231 | None:intergenic | 50.0% | |
| !! | AGATGGCTTGGTGAAGTGAG+AGG | - | chr2_1:51006838-51006857 | Msa0210670:CDS | 50.0% |
| CCTCTTGTAGGACCAAGCAA+AGG | + | chr2_1:51006881-51006900 | None:intergenic | 50.0% | |
| CCTTTGCTTGGTCCTACAAG+AGG | - | chr2_1:51006878-51006897 | Msa0210670:intron | 50.0% | |
| CAAGAGTGGATATGTGTGGC+AGG | - | chr2_1:51007037-51007056 | Msa0210670:intron | 50.0% | |
| !!! | CGTTGGTTTTTAGCTCGGAC+AGG | - | chr2_1:51007510-51007529 | Msa0210670:CDS | 50.0% |
| CGACACCGATACTTACACGT+AGG | - | chr2_1:51008721-51008740 | Msa0210670:intron | 50.0% | |
| TGGCGCCTACGTGTAAGTAT+CGG | + | chr2_1:51008729-51008748 | None:intergenic | 50.0% | |
| TAGCCCATGCAACCAAGAGT+TGG | + | chr2_1:51009096-51009115 | None:intergenic | 50.0% | |
| ACAAGCTAGGAGGGTCAGCT+AGG | - | chr2_1:51007962-51007981 | Msa0210670:CDS | 55.0% | |
| GAGGGTCAGCTAGGTGCTTT+GGG | - | chr2_1:51007971-51007990 | Msa0210670:CDS | 55.0% | |
| !! | CTAGGTGCTTTGGGACTGCT+TGG | - | chr2_1:51007980-51007999 | Msa0210670:CDS | 55.0% |
| CTGTTGCAGAGGCCTCGAAA+TGG | - | chr2_1:51008152-51008171 | Msa0210670:intron | 55.0% | |
| GGAGGGTCAGCTAGGTGCTT+TGG | - | chr2_1:51007970-51007989 | Msa0210670:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 51005907 | 51009437 | 51005907 | ID=Msa0210670;Name=Msa0210670 |
| chr2_1 | mRNA | 51005907 | 51009437 | 51005907 | ID=Msa0210670-mRNA-1;Parent=Msa0210670;Name=Msa0210670-mRNA-1;_AED=0.11;_eAED=0.13;_QI=0|0|0|1|1|1|8|0|420 |
| chr2_1 | exon | 51009397 | 51009437 | 51009397 | ID=Msa0210670-mRNA-1:exon:14168;Parent=Msa0210670-mRNA-1 |
| chr2_1 | exon | 51009053 | 51009219 | 51009053 | ID=Msa0210670-mRNA-1:exon:14167;Parent=Msa0210670-mRNA-1 |
| chr2_1 | exon | 51008445 | 51008514 | 51008445 | ID=Msa0210670-mRNA-1:exon:14166;Parent=Msa0210670-mRNA-1 |
| chr2_1 | exon | 51008201 | 51008313 | 51008201 | ID=Msa0210670-mRNA-1:exon:14165;Parent=Msa0210670-mRNA-1 |
| chr2_1 | exon | 51007650 | 51008023 | 51007650 | ID=Msa0210670-mRNA-1:exon:14164;Parent=Msa0210670-mRNA-1 |
| chr2_1 | exon | 51007307 | 51007548 | 51007307 | ID=Msa0210670-mRNA-1:exon:14163;Parent=Msa0210670-mRNA-1 |
| chr2_1 | exon | 51006790 | 51006888 | 51006790 | ID=Msa0210670-mRNA-1:exon:14162;Parent=Msa0210670-mRNA-1 |
| chr2_1 | exon | 51005907 | 51006063 | 51005907 | ID=Msa0210670-mRNA-1:exon:14161;Parent=Msa0210670-mRNA-1 |
| chr2_1 | CDS | 51009397 | 51009437 | 51009397 | ID=Msa0210670-mRNA-1:cds;Parent=Msa0210670-mRNA-1 |
| chr2_1 | CDS | 51009053 | 51009219 | 51009053 | ID=Msa0210670-mRNA-1:cds;Parent=Msa0210670-mRNA-1 |
| chr2_1 | CDS | 51008445 | 51008514 | 51008445 | ID=Msa0210670-mRNA-1:cds;Parent=Msa0210670-mRNA-1 |
| chr2_1 | CDS | 51008201 | 51008313 | 51008201 | ID=Msa0210670-mRNA-1:cds;Parent=Msa0210670-mRNA-1 |
| chr2_1 | CDS | 51007650 | 51008023 | 51007650 | ID=Msa0210670-mRNA-1:cds;Parent=Msa0210670-mRNA-1 |
| chr2_1 | CDS | 51007307 | 51007548 | 51007307 | ID=Msa0210670-mRNA-1:cds;Parent=Msa0210670-mRNA-1 |
| chr2_1 | CDS | 51006790 | 51006888 | 51006790 | ID=Msa0210670-mRNA-1:cds;Parent=Msa0210670-mRNA-1 |
| chr2_1 | CDS | 51005907 | 51006063 | 51005907 | ID=Msa0210670-mRNA-1:cds;Parent=Msa0210670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
