Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0210680 | XP_003595830.2 | 93.692 | 428 | 26 | 1 | 27 | 454 | 1 | 427 | 0.0 | 794 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0210680 | sp|Q9SYJ8|SOK1_ARATH | 36.725 | 403 | 168 | 13 | 31 | 425 | 7 | 330 | 4.18e-63 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0210680 | G7IQN5 | 93.692 | 428 | 26 | 1 | 27 | 454 | 1 | 427 | 0.0 | 794 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0210680 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0210680 | MtrunA17_Chr2g0309101 | 93.692 | 428 | 26 | 1 | 27 | 454 | 1 | 427 | 0.0 | 794 |
| Msa0210680 | MtrunA17_Chr2g0320281 | 45.055 | 91 | 49 | 1 | 35 | 125 | 31 | 120 | 4.69e-21 | 95.9 |
| Msa0210680 | MtrunA17_Chr4g0030891 | 42.857 | 91 | 51 | 1 | 35 | 125 | 33 | 122 | 1.18e-20 | 94.0 |
| Msa0210680 | MtrunA17_Chr4g0028131 | 45.556 | 90 | 48 | 1 | 36 | 125 | 31 | 119 | 3.05e-20 | 93.2 |
| Msa0210680 | MtrunA17_Chr1g0212601 | 41.121 | 107 | 59 | 4 | 24 | 129 | 3 | 106 | 9.45e-18 | 82.8 |
| Msa0210680 | MtrunA17_Chr8g0382651 | 41.000 | 100 | 57 | 2 | 27 | 125 | 22 | 120 | 2.69e-17 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0210680 | AT1G05577.1 | 36.725 | 403 | 168 | 13 | 31 | 425 | 7 | 330 | 4.25e-64 | 211 |
| Msa0210680 | AT2G28150.1 | 46.739 | 92 | 48 | 1 | 34 | 125 | 31 | 121 | 1.84e-23 | 103 |
| Msa0210680 | AT3G46110.2 | 43.269 | 104 | 58 | 1 | 22 | 125 | 5 | 107 | 2.75e-22 | 97.4 |
| Msa0210680 | AT3G46110.1 | 43.269 | 104 | 58 | 1 | 22 | 125 | 5 | 107 | 3.26e-22 | 97.8 |
| Msa0210680 | AT5G59790.1 | 31.737 | 167 | 102 | 5 | 35 | 191 | 45 | 209 | 2.02e-21 | 96.7 |
| Msa0210680 | AT5G59790.2 | 31.737 | 167 | 102 | 5 | 35 | 191 | 45 | 209 | 2.05e-21 | 96.3 |
| Msa0210680 | AT5G10150.1 | 39.823 | 113 | 66 | 2 | 27 | 139 | 36 | 146 | 2.72e-21 | 95.9 |
| Msa0210680 | AT5G10150.2 | 39.823 | 113 | 66 | 2 | 27 | 139 | 36 | 146 | 7.40e-21 | 94.7 |
Find 75 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGGTCAGCTAGGTGCTT+TGG | 0.272991 | 2_1:+51023984 | Msa0210680:CDS |
| AGAGAGACAAAGATCTCTTT+TGG | 0.288400 | 2_1:+51021923 | Msa0210680:CDS |
| GAGGGTCAGCTAGGTGCTTT+GGG | 0.306723 | 2_1:+51023985 | Msa0210680:CDS |
| CATGATCAAAATGAACATTA+TGG | 0.310101 | 2_1:+51024023 | Msa0210680:CDS |
| CAAATCCACACTACCCCTTT+TGG | 0.310924 | 2_1:+51023135 | Msa0210680:CDS |
| ATATGTGTGGCAGGATTTAA+TGG | 0.312486 | 2_1:+51023059 | Msa0210680:CDS |
| GACGTATTCATTATCAGAAA+TGG | 0.358743 | 2_1:-51023100 | None:intergenic |
| TAGGACCAAGCAAAGGATTC+AGG | 0.359159 | 2_1:-51022884 | None:intergenic |
| CAAACTTCTTATAAACCATT+TGG | 0.361784 | 2_1:+51024531 | Msa0210680:CDS |
| GGCACATTAATAGGCTCCTT+AGG | 0.392655 | 2_1:-51023924 | None:intergenic |
| ACGTATTCATTATCAGAAAT+GGG | 0.408507 | 2_1:-51023099 | None:intergenic |
| CTAGGTGCTTTGGGACTGCT+TGG | 0.417878 | 2_1:+51023994 | Msa0210680:CDS |
| TCAGTTACTTACGAGCAAAT+TGG | 0.421789 | 2_1:-51024558 | None:intergenic |
| CAAAAGGTGGAGAAGTTAGA+AGG | 0.438816 | 2_1:+51022179 | Msa0210680:CDS |
| GCACATTAATAGGCTCCTTA+GGG | 0.443875 | 2_1:-51023923 | None:intergenic |
| GCTTCTTATCTTAGTGAATG+AGG | 0.454114 | 2_1:-51023796 | None:intergenic |
| GATTCTTCTTCTGATAAAGA+TGG | 0.455541 | 2_1:-51023429 | None:intergenic |
| TGTGGATTTGTGATCCTTTG+AGG | 0.457496 | 2_1:-51023122 | None:intergenic |
| ACTTCTTATAAACCATTTGG+TGG | 0.460136 | 2_1:+51024534 | Msa0210680:CDS |
| ATGATTCAACAACCTCTTGT+AGG | 0.473719 | 2_1:-51022903 | None:intergenic |
| AAAGATATTAAGAGATGGCT+TGG | 0.473793 | 2_1:+51022839 | Msa0210680:intron |
| ACCTACCTGAATCCTTTGCT+TGG | 0.483790 | 2_1:+51022879 | Msa0210680:CDS |
| GTTCTTCATCTTGCTCGAAA+CGG | 0.489342 | 2_1:+51022265 | Msa0210680:CDS |
| TGCTCAGAAAATTGCCCCTA+AGG | 0.491836 | 2_1:+51023908 | Msa0210680:CDS |
| CATAATTTGATGAGTAAGAA+GGG | 0.494107 | 2_1:+51023675 | Msa0210680:CDS |
| TGATAAAGTACATACCAAAA+GGG | 0.495189 | 2_1:-51023149 | None:intergenic |
| GAGCAAATTGGTCCACCAAA+TGG | 0.501260 | 2_1:-51024546 | None:intergenic |
| ACAAGCTAGGAGGGTCAGCT+AGG | 0.501758 | 2_1:+51023976 | Msa0210680:CDS |
| TCATAATTTGATGAGTAAGA+AGG | 0.513194 | 2_1:+51023674 | Msa0210680:CDS |
| CAAGAGTGGATATGTGTGGC+AGG | 0.519703 | 2_1:+51023050 | Msa0210680:CDS |
| AAATCAAGCATGGAAACAAA+AGG | 0.522656 | 2_1:+51022163 | Msa0210680:CDS |
| AGAAATCAGTCAGGATTCGT+TGG | 0.523001 | 2_1:+51023506 | Msa0210680:CDS |
| AGATGGCTTGGTGAAGTGAG+AGG | 0.523481 | 2_1:+51022851 | Msa0210680:CDS |
| AGAGATCTTTGTCTCTCTGC+CGG | 0.533661 | 2_1:-51021918 | None:intergenic |
| AATGTTATCAGAAATCAGTC+AGG | 0.538149 | 2_1:+51023497 | Msa0210680:CDS |
| GGCTTGGTGAAGTGAGAGGA+AGG | 0.540996 | 2_1:+51022855 | Msa0210680:CDS |
| GAGATGAAATAATCAAGAGC+AGG | 0.544676 | 2_1:+51024484 | Msa0210680:CDS |
| AAAATGAACATTATGGAGCC+AGG | 0.547597 | 2_1:+51024030 | Msa0210680:CDS |
| TAAGGAGCCTATTAATGTGC+CGG | 0.548310 | 2_1:+51023926 | Msa0210680:CDS |
| CTTGAAAAGATATTAAGAGA+TGG | 0.548408 | 2_1:+51022834 | Msa0210680:intron |
| ATCAAATTATGATACAAAGA+AGG | 0.549252 | 2_1:-51023663 | None:intergenic |
| TGAGACGATGTTGACGATGT+TGG | 0.555123 | 2_1:-51023765 | None:intergenic |
| AAACACATGAAGTCTTGTAA+AGG | 0.559207 | 2_1:+51025333 | Msa0210680:CDS |
| AAGTCTTGTAAAGGAATGAA+AGG | 0.559264 | 2_1:+51025342 | Msa0210680:CDS |
| TGTAAAGGAATGAAAGGCAT+GGG | 0.564737 | 2_1:+51025348 | Msa0210680:CDS |
| AAAAGGGCTGAGATTTGTAA+AGG | 0.565816 | 2_1:+51023951 | Msa0210680:CDS |
| GATAATGAATACGTCCTCAA+AGG | 0.574396 | 2_1:+51023108 | Msa0210680:CDS |
| ATTTGTAAAGGAGACAAGCT+AGG | 0.576650 | 2_1:+51023963 | Msa0210680:CDS |
| CGTATTCATTATCAGAAATG+GGG | 0.578739 | 2_1:-51023098 | None:intergenic |
| CCTTTGCTTGGTCCTACAAG+AGG | 0.578853 | 2_1:+51022891 | Msa0210680:CDS |
| ACATACCAAAAGGGGTAGTG+TGG | 0.583512 | 2_1:-51023140 | None:intergenic |
| TGAAGTTGTACAAGTTGAAG+AGG | 0.587754 | 2_1:+51023383 | Msa0210680:CDS |
| TTGTAAAGGAATGAAAGGCA+TGG | 0.590138 | 2_1:+51025347 | Msa0210680:CDS |
| GTTGATGATGCAGGCAATGT+GGG | 0.595370 | 2_1:+51025283 | Msa0210680:intron |
| AATCTACTTTCTTAGTCACA+TGG | 0.595550 | 2_1:+51022210 | Msa0210680:CDS |
| ATCTACTTTCTTAGTCACAT+GGG | 0.598289 | 2_1:+51022211 | Msa0210680:CDS |
| GTAAAGGAGACAAGCTAGGA+GGG | 0.602767 | 2_1:+51023967 | Msa0210680:CDS |
| AAGTTCATCAAAATCAAGCA+TGG | 0.603008 | 2_1:+51022153 | Msa0210680:CDS |
| GATAAAGTACATACCAAAAG+GGG | 0.611244 | 2_1:-51023148 | None:intergenic |
| AAGCTGTGTTTCCTCAGCAA+TGG | 0.615582 | 2_1:-51025385 | None:intergenic |
| CACATTAATAGGCTCCTTAG+GGG | 0.618248 | 2_1:-51023922 | None:intergenic |
| TACTTTCTTAGTCACATGGG+TGG | 0.621822 | 2_1:+51022214 | Msa0210680:CDS |
| TGAAGAACGCGAATGAGATG+AGG | 0.629767 | 2_1:-51022250 | None:intergenic |
| TCAAGCATGGAAACAAAAGG+TGG | 0.631710 | 2_1:+51022166 | Msa0210680:CDS |
| AACTATAGGAGGTACAAGAG+TGG | 0.640091 | 2_1:+51023036 | Msa0210680:intron |
| GTATTCATTATCAGAAATGG+GGG | 0.640428 | 2_1:-51023097 | None:intergenic |
| TGTAAAGGAGACAAGCTAGG+AGG | 0.643651 | 2_1:+51023966 | Msa0210680:CDS |
| CGAAACGGTGTTTATCTCAG+AGG | 0.652327 | 2_1:+51022280 | Msa0210680:CDS |
| TTCAGCTACAACCATTGCTG+AGG | 0.657539 | 2_1:+51025374 | Msa0210680:CDS |
| TTGGATTGGTTGTGGAACTG+TGG | 0.657832 | 2_1:+51023851 | Msa0210680:CDS |
| GCTTGGTGAAGTGAGAGGAA+GGG | 0.657967 | 2_1:+51022856 | Msa0210680:CDS |
| ACCAAGCAAAGGATTCAGGT+AGG | 0.685603 | 2_1:-51022880 | None:intergenic |
| GGTACAAGAGTGGATATGTG+TGG | 0.687025 | 2_1:+51023046 | Msa0210680:CDS |
| AGTTGATGATGCAGGCAATG+TGG | 0.692418 | 2_1:+51025282 | Msa0210680:intron |
| CCTCTTGTAGGACCAAGCAA+AGG | 0.696251 | 2_1:-51022891 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGTGAATAAATAAAAAT+GGG | - | chr2_1:51023188-51023207 | None:intergenic | 10.0% |
| !! | TTAATGTGAATAAATAAAAA+TGG | - | chr2_1:51023189-51023208 | None:intergenic | 10.0% |
| !! | TATAATTATTTGAATCATAG+TGG | + | chr2_1:51021982-51022001 | Msa0210680:intron | 15.0% |
| !! | GAACAATTTGAATAAAAATA+TGG | - | chr2_1:51022323-51022342 | None:intergenic | 15.0% |
| !! | AAAATTACATAATAAGGTAA+TGG | - | chr2_1:51023252-51023271 | None:intergenic | 15.0% |
| !! | TTAGCAAAAATTACATAATA+AGG | - | chr2_1:51023258-51023277 | None:intergenic | 15.0% |
| !! | TAATTAAAACATTATTTGGT+TGG | + | chr2_1:51024404-51024423 | Msa0210680:intron | 15.0% |
| !! | CAAGGAAATAATGATTAATA+AGG | - | chr2_1:51022930-51022949 | None:intergenic | 20.0% |
| !! | AGTTAAAGGTTAAAAAAATG+AGG | - | chr2_1:51022972-51022991 | None:intergenic | 20.0% |
| !! | GGAAATACATATATAGTTAA+AGG | - | chr2_1:51022986-51023005 | None:intergenic | 20.0% |
| !! | TTAGTTGCAAAAATTGATTA+TGG | - | chr2_1:51023007-51023026 | None:intergenic | 20.0% |
| !! | ACTAACAATTATTGAACTAT+AGG | + | chr2_1:51023022-51023041 | Msa0210680:intron | 20.0% |
| !!! | TCACATTAATATTTTGAGTA+TGG | + | chr2_1:51023200-51023219 | Msa0210680:intron | 20.0% |
| !! | ATCAAATTATGATACAAAGA+AGG | - | chr2_1:51023666-51023685 | None:intergenic | 20.0% |
| !! | ATTCAAAACCATGTTTAAAA+GGG | - | chr2_1:51024258-51024277 | None:intergenic | 20.0% |
| !!! | ATGAAAATTTTTGGTCTTAT+AGG | + | chr2_1:51024644-51024663 | Msa0210680:intron | 20.0% |
| !!! | CCATTTTTTCAACTTAATAA+TGG | - | chr2_1:51024763-51024782 | None:intergenic | 20.0% |
| !!! | CCATTATTAAGTTGAAAAAA+TGG | + | chr2_1:51024760-51024779 | Msa0210680:intron | 20.0% |
| ! | TTATTCAAATTGTTCTGTAC+TGG | + | chr2_1:51022328-51022347 | Msa0210680:intron | 25.0% |
| ! | CTTGAAAAGATATTAAGAGA+TGG | + | chr2_1:51022834-51022853 | Msa0210680:intron | 25.0% |
| ! | AAAAAATGAGGTTGAGAAAA+TGG | - | chr2_1:51022960-51022979 | None:intergenic | 25.0% |
| ! | AACAATTATTGAACTATAGG+AGG | + | chr2_1:51023025-51023044 | Msa0210680:intron | 25.0% |
| ! | ACGTATTCATTATCAGAAAT+GGG | - | chr2_1:51023102-51023121 | None:intergenic | 25.0% |
| ! | TGATAAAGTACATACCAAAA+GGG | - | chr2_1:51023152-51023171 | None:intergenic | 25.0% |
| ! | ATGATAAAGTACATACCAAA+AGG | - | chr2_1:51023153-51023172 | None:intergenic | 25.0% |
| ! | TCATAATTTGATGAGTAAGA+AGG | + | chr2_1:51023674-51023693 | Msa0210680:CDS | 25.0% |
| ! | CATAATTTGATGAGTAAGAA+GGG | + | chr2_1:51023675-51023694 | Msa0210680:CDS | 25.0% |
| ! | CATGATCAAAATGAACATTA+TGG | + | chr2_1:51024023-51024042 | Msa0210680:CDS | 25.0% |
| ! | GATTATGAATATTCTAAGCA+TGG | - | chr2_1:51024231-51024250 | None:intergenic | 25.0% |
| ! | GATTCAAAACCATGTTTAAA+AGG | - | chr2_1:51024259-51024278 | None:intergenic | 25.0% |
| !!! | TTTTAAGAATGGCTTTTAAC+AGG | - | chr2_1:51024281-51024300 | None:intergenic | 25.0% |
| ! | TGTTAAAAGCCATTCTTAAA+AGG | + | chr2_1:51024280-51024299 | Msa0210680:intron | 25.0% |
| ! | GTTAAAAGCCATTCTTAAAA+GGG | + | chr2_1:51024281-51024300 | Msa0210680:intron | 25.0% |
| ! | CAAACTTCTTATAAACCATT+TGG | + | chr2_1:51024531-51024550 | Msa0210680:CDS | 25.0% |
| ! | TTGAGTAAACTTCAATTGTT+TGG | + | chr2_1:51024588-51024607 | Msa0210680:intron | 25.0% |
| ! | GATTTCAACTATGAAATGTT+AGG | + | chr2_1:51024610-51024629 | Msa0210680:intron | 25.0% |
| !! | AAACTGTGCATGAAAATTTT+TGG | + | chr2_1:51024635-51024654 | Msa0210680:intron | 25.0% |
| !!! | AAAATTTTTGGTCTTATAGG+TGG | + | chr2_1:51024647-51024666 | Msa0210680:intron | 25.0% |
| !!! | TTAAGTTGAAAAAATGGAAG+TGG | + | chr2_1:51024766-51024785 | Msa0210680:intron | 25.0% |
| ! | TAATGTGTCTTTACACATAT+GGG | - | chr2_1:51025214-51025233 | None:intergenic | 25.0% |
| ! | TTAATGTGTCTTTACACATA+TGG | - | chr2_1:51025215-51025234 | None:intergenic | 25.0% |
| ACTAAGAGAAACAACTAACA+TGG | - | chr2_1:51021955-51021974 | None:intergenic | 30.0% | |
| !! | TCAAAAGAAGTGTCATTGTT+TGG | + | chr2_1:51022071-51022090 | Msa0210680:intron | 30.0% |
| AAGTTCATCAAAATCAAGCA+TGG | + | chr2_1:51022153-51022172 | Msa0210680:CDS | 30.0% | |
| AAATCAAGCATGGAAACAAA+AGG | + | chr2_1:51022163-51022182 | Msa0210680:CDS | 30.0% | |
| AATCTACTTTCTTAGTCACA+TGG | + | chr2_1:51022210-51022229 | Msa0210680:CDS | 30.0% | |
| ATCTACTTTCTTAGTCACAT+GGG | + | chr2_1:51022211-51022230 | Msa0210680:CDS | 30.0% | |
| TCACACATAGTTCAAAATTG+CGG | + | chr2_1:51022416-51022435 | Msa0210680:intron | 30.0% | |
| !! | CCTCTAAAACCTTTATATTG+CGG | - | chr2_1:51022449-51022468 | None:intergenic | 30.0% |
| GTGTACTAAATTGTGTATCA+CGG | - | chr2_1:51022655-51022674 | None:intergenic | 30.0% | |
| AATTGCAGATCATAGACAAT+AGG | - | chr2_1:51022721-51022740 | None:intergenic | 30.0% | |
| AAAGATATTAAGAGATGGCT+TGG | + | chr2_1:51022839-51022858 | Msa0210680:intron | 30.0% | |
| GTATTCATTATCAGAAATGG+GGG | - | chr2_1:51023100-51023119 | None:intergenic | 30.0% | |
| CGTATTCATTATCAGAAATG+GGG | - | chr2_1:51023101-51023120 | None:intergenic | 30.0% | |
| GACGTATTCATTATCAGAAA+TGG | - | chr2_1:51023103-51023122 | None:intergenic | 30.0% | |
| GATAAAGTACATACCAAAAG+GGG | - | chr2_1:51023151-51023170 | None:intergenic | 30.0% | |
| TAGTTTCTGCATTAGTACAA+AGG | - | chr2_1:51023320-51023339 | None:intergenic | 30.0% | |
| GATTCTTCTTCTGATAAAGA+TGG | - | chr2_1:51023432-51023451 | None:intergenic | 30.0% | |
| AATGTTATCAGAAATCAGTC+AGG | + | chr2_1:51023497-51023516 | Msa0210680:CDS | 30.0% | |
| ! | TTGAAGAAGAGAAGCTTTTA+GGG | + | chr2_1:51023580-51023599 | Msa0210680:CDS | 30.0% |
| AGTAAGAAGGGTAAAAAAGA+TGG | + | chr2_1:51023687-51023706 | Msa0210680:CDS | 30.0% | |
| TGACTAGTGTGTTCAAAAAT+TGG | + | chr2_1:51023832-51023851 | Msa0210680:CDS | 30.0% | |
| AGTGTGTTCAAAAATTGGAT+TGG | + | chr2_1:51023837-51023856 | Msa0210680:CDS | 30.0% | |
| !! | TTCAAAAATTGGATTGGTTG+TGG | + | chr2_1:51023843-51023862 | Msa0210680:CDS | 30.0% |
| TATTAATGTGCCGGAAAAAA+GGG | + | chr2_1:51023935-51023954 | Msa0210680:CDS | 30.0% | |
| TTATGATACAATTTCTCACC+TGG | - | chr2_1:51024051-51024070 | None:intergenic | 30.0% | |
| AATCCAATGCTACTATGATT+GGG | + | chr2_1:51024312-51024331 | Msa0210680:intron | 30.0% | |
| ! | TTTTACAGAAAAAGCTGTGA+TGG | + | chr2_1:51024462-51024481 | Msa0210680:intron | 30.0% |
| ACTTCTTATAAACCATTTGG+TGG | + | chr2_1:51024534-51024553 | Msa0210680:CDS | 30.0% | |
| TTATGATGTTTACCAACTCT+TGG | + | chr2_1:51025096-51025115 | Msa0210680:intron | 30.0% | |
| GCATCATCAACTACTATTTA+TGG | - | chr2_1:51025274-51025293 | None:intergenic | 30.0% | |
| !! | TAAATAGTAGTTGATGATGC+AGG | + | chr2_1:51025274-51025293 | Msa0210680:intron | 30.0% |
| ! | AAACACATGAAGTCTTGTAA+AGG | + | chr2_1:51025333-51025352 | Msa0210680:CDS | 30.0% |
| ! | AAGTCTTGTAAAGGAATGAA+AGG | + | chr2_1:51025342-51025361 | Msa0210680:CDS | 30.0% |
| ! | AGAGAGACAAAGATCTCTTT+TGG | + | chr2_1:51021923-51021942 | Msa0210680:CDS | 35.0% |
| ! | GAGAGACAAAGATCTCTTTT+GGG | + | chr2_1:51021924-51021943 | Msa0210680:CDS | 35.0% |
| !!! | GACACTTCTTTTGAAACACA+AGG | - | chr2_1:51022065-51022084 | None:intergenic | 35.0% |
| !! | GAAGTGTCATTGTTTGGTTT+TGG | + | chr2_1:51022077-51022096 | Msa0210680:intron | 35.0% |
| TGTCATTGTTGAGTTTGTGT+TGG | + | chr2_1:51022100-51022119 | Msa0210680:intron | 35.0% | |
| !! | CCGCAATATAAAGGTTTTAG+AGG | + | chr2_1:51022446-51022465 | Msa0210680:intron | 35.0% |
| ATGATTCAACAACCTCTTGT+AGG | - | chr2_1:51022906-51022925 | None:intergenic | 35.0% | |
| !! | TGAGAAAATGGACTAAAGCA+AGG | - | chr2_1:51022948-51022967 | None:intergenic | 35.0% |
| ATATGTGTGGCAGGATTTAA+TGG | + | chr2_1:51023059-51023078 | Msa0210680:CDS | 35.0% | |
| GATAATGAATACGTCCTCAA+AGG | + | chr2_1:51023108-51023127 | Msa0210680:CDS | 35.0% | |
| ! | TGAAGTTGTACAAGTTGAAG+AGG | + | chr2_1:51023383-51023402 | Msa0210680:CDS | 35.0% |
| ! | GTTGAAGAAGAGAAGCTTTT+AGG | + | chr2_1:51023579-51023598 | Msa0210680:CDS | 35.0% |
| !! | CTTTTAGGGAATGGAAAAGA+AGG | + | chr2_1:51023594-51023613 | Msa0210680:CDS | 35.0% |
| GTAGAAAAAGTTGAATCAGG+AGG | - | chr2_1:51023744-51023763 | None:intergenic | 35.0% | |
| GGAGTAGAAAAAGTTGAATC+AGG | - | chr2_1:51023747-51023766 | None:intergenic | 35.0% | |
| GCTTCTTATCTTAGTGAATG+AGG | - | chr2_1:51023799-51023818 | None:intergenic | 35.0% | |
| !!! | CTTTTTTCCGGCACATTAAT+AGG | - | chr2_1:51023936-51023955 | None:intergenic | 35.0% |
| CTATTAATGTGCCGGAAAAA+AGG | + | chr2_1:51023934-51023953 | Msa0210680:CDS | 35.0% | |
| AAAAGGGCTGAGATTTGTAA+AGG | + | chr2_1:51023951-51023970 | Msa0210680:CDS | 35.0% | |
| ATTTGTAAAGGAGACAAGCT+AGG | + | chr2_1:51023963-51023982 | Msa0210680:CDS | 35.0% | |
| AAAATGAACATTATGGAGCC+AGG | + | chr2_1:51024030-51024049 | Msa0210680:CDS | 35.0% | |
| CAACTGCATACGCAATTTAA+AGG | - | chr2_1:51024092-51024111 | None:intergenic | 35.0% | |
| TTAAATTGCGTATGCAGTTG+CGG | + | chr2_1:51024092-51024111 | Msa0210680:intron | 35.0% | |
| ! | AATCGTGACCCTTTTAAACA+TGG | + | chr2_1:51024247-51024266 | Msa0210680:intron | 35.0% |
| !! | CACAAACACCCTTTTAAGAA+TGG | - | chr2_1:51024292-51024311 | None:intergenic | 35.0% |
| GAATCCAATGCTACTATGAT+TGG | + | chr2_1:51024311-51024330 | Msa0210680:intron | 35.0% | |
| TAACCCAATCATAGTAGCAT+TGG | - | chr2_1:51024318-51024337 | None:intergenic | 35.0% | |
| TACATTAGACATACGTCACT+AGG | + | chr2_1:51024342-51024361 | Msa0210680:intron | 35.0% | |
| GAGATGAAATAATCAAGAGC+AGG | + | chr2_1:51024484-51024503 | Msa0210680:CDS | 35.0% | |
| TCAGTTACTTACGAGCAAAT+TGG | - | chr2_1:51024561-51024580 | None:intergenic | 35.0% | |
| CGTGTCTATCAATGTTTGAT+AGG | - | chr2_1:51024717-51024736 | None:intergenic | 35.0% | |
| GTGTTGTCAATATCAGACAT+TGG | + | chr2_1:51024811-51024830 | Msa0210680:intron | 35.0% | |
| TTCCAACAGAAAAGCCAATA+AGG | + | chr2_1:51024973-51024992 | Msa0210680:intron | 35.0% | |
| ! | ATGTGTTTGTGCATTTTCTC+AGG | - | chr2_1:51025321-51025340 | None:intergenic | 35.0% |
| TTGTAAAGGAATGAAAGGCA+TGG | + | chr2_1:51025347-51025366 | Msa0210680:CDS | 35.0% | |
| ! | TGTAAAGGAATGAAAGGCAT+GGG | + | chr2_1:51025348-51025367 | Msa0210680:CDS | 35.0% |
| TCAAGCATGGAAACAAAAGG+TGG | + | chr2_1:51022166-51022185 | Msa0210680:CDS | 40.0% | |
| CAAAAGGTGGAGAAGTTAGA+AGG | + | chr2_1:51022179-51022198 | Msa0210680:CDS | 40.0% | |
| TACTTTCTTAGTCACATGGG+TGG | + | chr2_1:51022214-51022233 | Msa0210680:CDS | 40.0% | |
| GTTCTTCATCTTGCTCGAAA+CGG | + | chr2_1:51022265-51022284 | Msa0210680:CDS | 40.0% | |
| GGTACACAACCGCAATATAA+AGG | + | chr2_1:51022437-51022456 | Msa0210680:intron | 40.0% | |
| ACACAGTGTTGTCAAATAGC+TGG | + | chr2_1:51022671-51022690 | Msa0210680:intron | 40.0% | |
| ! | AACTATAGGAGGTACAAGAG+TGG | + | chr2_1:51023036-51023055 | Msa0210680:intron | 40.0% |
| TATCAGAAATGGGGGTTATG+AGG | - | chr2_1:51023092-51023111 | None:intergenic | 40.0% | |
| TGTGGATTTGTGATCCTTTG+AGG | - | chr2_1:51023125-51023144 | None:intergenic | 40.0% | |
| AGAAATCAGTCAGGATTCGT+TGG | + | chr2_1:51023506-51023525 | Msa0210680:CDS | 40.0% | |
| !!! | GGATTCGTTGGTTTTTAGCT+CGG | + | chr2_1:51023518-51023537 | Msa0210680:CDS | 40.0% |
| !! | GAAGAGAAGCTTTTAGGGAA+TGG | + | chr2_1:51023585-51023604 | Msa0210680:CDS | 40.0% |
| CACATTAATAGGCTCCTTAG+GGG | - | chr2_1:51023925-51023944 | None:intergenic | 40.0% | |
| GCACATTAATAGGCTCCTTA+GGG | - | chr2_1:51023926-51023945 | None:intergenic | 40.0% | |
| TAAGGAGCCTATTAATGTGC+CGG | + | chr2_1:51023926-51023945 | Msa0210680:CDS | 40.0% | |
| !!! | CAAATCTCAGCCCTTTTTTC+CGG | - | chr2_1:51023948-51023967 | None:intergenic | 40.0% |
| TTACACTGTGAACCAAACTG+TGG | + | chr2_1:51024115-51024134 | Msa0210680:intron | 40.0% | |
| CCACAATACAAACCATTTCG+AGG | - | chr2_1:51024181-51024200 | None:intergenic | 40.0% | |
| ! | CCTCGAAATGGTTTGTATTG+TGG | + | chr2_1:51024178-51024197 | Msa0210680:intron | 40.0% |
| AACACTAACACACACTGACA+CGG | + | chr2_1:51024843-51024862 | Msa0210680:intron | 40.0% | |
| !! | CTAAAGTGTCGAAGCTACTT+AGG | + | chr2_1:51024879-51024898 | Msa0210680:intron | 40.0% |
| !!! | GACCTTATTGGCTTTTCTGT+TGG | - | chr2_1:51024978-51024997 | None:intergenic | 40.0% |
| CAGCAGAATCTTGACCTTAT+TGG | - | chr2_1:51024990-51025009 | None:intergenic | 40.0% | |
| CAATAAGGTCAAGATTCTGC+TGG | + | chr2_1:51024988-51025007 | Msa0210680:intron | 40.0% | |
| TTTACCAACTCTTGGTTGCA+TGG | + | chr2_1:51025104-51025123 | Msa0210680:intron | 40.0% | |
| TTACCAACTCTTGGTTGCAT+GGG | + | chr2_1:51025105-51025124 | Msa0210680:intron | 40.0% | |
| AGAGATCTTTGTCTCTCTGC+CGG | - | chr2_1:51021921-51021940 | None:intergenic | 45.0% | |
| TGAAGAACGCGAATGAGATG+AGG | - | chr2_1:51022253-51022272 | None:intergenic | 45.0% | |
| CGAAACGGTGTTTATCTCAG+AGG | + | chr2_1:51022280-51022299 | Msa0210680:CDS | 45.0% | |
| ACCTACCTGAATCCTTTGCT+TGG | + | chr2_1:51022879-51022898 | Msa0210680:CDS | 45.0% | |
| ACCAAGCAAAGGATTCAGGT+AGG | - | chr2_1:51022883-51022902 | None:intergenic | 45.0% | |
| TAGGACCAAGCAAAGGATTC+AGG | - | chr2_1:51022887-51022906 | None:intergenic | 45.0% | |
| GGTACAAGAGTGGATATGTG+TGG | + | chr2_1:51023046-51023065 | Msa0210680:CDS | 45.0% | |
| ! | CAAATCCACACTACCCCTTT+TGG | + | chr2_1:51023135-51023154 | Msa0210680:CDS | 45.0% |
| ACATACCAAAAGGGGTAGTG+TGG | - | chr2_1:51023143-51023162 | None:intergenic | 45.0% | |
| !!! | TTTTAGCTCGGACAGGTCAT+CGG | + | chr2_1:51023530-51023549 | Msa0210680:CDS | 45.0% |
| TGAGACGATGTTGACGATGT+TGG | - | chr2_1:51023768-51023787 | None:intergenic | 45.0% | |
| !! | TTGGATTGGTTGTGGAACTG+TGG | + | chr2_1:51023851-51023870 | Msa0210680:CDS | 45.0% |
| ! | TAGGGGCAATTTTCTGAGCA+GGG | - | chr2_1:51023908-51023927 | None:intergenic | 45.0% |
| ! | TTAGGGGCAATTTTCTGAGC+AGG | - | chr2_1:51023909-51023928 | None:intergenic | 45.0% |
| TGCTCAGAAAATTGCCCCTA+AGG | + | chr2_1:51023908-51023927 | Msa0210680:CDS | 45.0% | |
| GGCACATTAATAGGCTCCTT+AGG | - | chr2_1:51023927-51023946 | None:intergenic | 45.0% | |
| TGTAAAGGAGACAAGCTAGG+AGG | + | chr2_1:51023966-51023985 | Msa0210680:CDS | 45.0% | |
| GTAAAGGAGACAAGCTAGGA+GGG | + | chr2_1:51023967-51023986 | Msa0210680:CDS | 45.0% | |
| CAATTGCATCAGCCACAGTT+TGG | - | chr2_1:51024130-51024149 | None:intergenic | 45.0% | |
| GCAACTGTATTCTGTTGCAG+AGG | + | chr2_1:51024155-51024174 | Msa0210680:intron | 45.0% | |
| GAGCAAATTGGTCCACCAAA+TGG | - | chr2_1:51024549-51024568 | None:intergenic | 45.0% | |
| !! | AGTTGATGATGCAGGCAATG+TGG | + | chr2_1:51025282-51025301 | Msa0210680:intron | 45.0% |
| !! | GTTGATGATGCAGGCAATGT+GGG | + | chr2_1:51025283-51025302 | Msa0210680:intron | 45.0% |
| TTCAGCTACAACCATTGCTG+AGG | + | chr2_1:51025374-51025393 | Msa0210680:CDS | 45.0% | |
| AAGCTGTGTTTCCTCAGCAA+TGG | - | chr2_1:51025388-51025407 | None:intergenic | 45.0% | |
| !! | ATATATATATAATTAACAAA+AGG | + | chr2_1:51022022-51022041 | Msa0210680:intron | 5.0% |
| !! | TATATATATAATTAACAAAA+GGG | + | chr2_1:51022023-51022042 | Msa0210680:intron | 5.0% |
| !! | AATTTAATTAAAACATTATT+TGG | + | chr2_1:51024400-51024419 | Msa0210680:intron | 5.0% |
| !! | AGATGGCTTGGTGAAGTGAG+AGG | + | chr2_1:51022851-51022870 | Msa0210680:CDS | 50.0% |
| ! | GCTTGGTGAAGTGAGAGGAA+GGG | + | chr2_1:51022856-51022875 | Msa0210680:CDS | 50.0% |
| CCTCTTGTAGGACCAAGCAA+AGG | - | chr2_1:51022894-51022913 | None:intergenic | 50.0% | |
| CCTTTGCTTGGTCCTACAAG+AGG | + | chr2_1:51022891-51022910 | Msa0210680:CDS | 50.0% | |
| CAAGAGTGGATATGTGTGGC+AGG | + | chr2_1:51023050-51023069 | Msa0210680:CDS | 50.0% | |
| !!! | CGTTGGTTTTTAGCTCGGAC+AGG | + | chr2_1:51023523-51023542 | Msa0210680:CDS | 50.0% |
| CGACACCGATACTTACACGT+AGG | + | chr2_1:51024735-51024754 | Msa0210680:intron | 50.0% | |
| TGGCGCCTACGTGTAAGTAT+CGG | - | chr2_1:51024743-51024762 | None:intergenic | 50.0% | |
| TAGCCCATGCAACCAAGAGT+TGG | - | chr2_1:51025111-51025130 | None:intergenic | 50.0% | |
| !! | GGCTTGGTGAAGTGAGAGGA+AGG | + | chr2_1:51022855-51022874 | Msa0210680:CDS | 55.0% |
| ACAAGCTAGGAGGGTCAGCT+AGG | + | chr2_1:51023976-51023995 | Msa0210680:CDS | 55.0% | |
| GAGGGTCAGCTAGGTGCTTT+GGG | + | chr2_1:51023985-51024004 | Msa0210680:CDS | 55.0% | |
| !! | CTAGGTGCTTTGGGACTGCT+TGG | + | chr2_1:51023994-51024013 | Msa0210680:CDS | 55.0% |
| CTGTTGCAGAGGCCTCGAAA+TGG | + | chr2_1:51024166-51024185 | Msa0210680:intron | 55.0% | |
| GGAGGGTCAGCTAGGTGCTT+TGG | + | chr2_1:51023984-51024003 | Msa0210680:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 51021915 | 51025452 | 51021915 | ID=Msa0210680;Name=Msa0210680 |
| chr2_1 | mRNA | 51021915 | 51025452 | 51021915 | ID=Msa0210680-mRNA-1;Parent=Msa0210680;Name=Msa0210680-mRNA-1;_AED=0.08;_eAED=0.10;_QI=0|0|0|1|1|1|7|0|454 |
| chr2_1 | exon | 51021915 | 51021955 | 51021915 | ID=Msa0210680-mRNA-1:exon:14133;Parent=Msa0210680-mRNA-1 |
| chr2_1 | exon | 51022135 | 51022301 | 51022135 | ID=Msa0210680-mRNA-1:exon:14134;Parent=Msa0210680-mRNA-1 |
| chr2_1 | exon | 51022843 | 51022912 | 51022843 | ID=Msa0210680-mRNA-1:exon:14135;Parent=Msa0210680-mRNA-1 |
| chr2_1 | exon | 51023044 | 51023156 | 51023044 | ID=Msa0210680-mRNA-1:exon:14136;Parent=Msa0210680-mRNA-1 |
| chr2_1 | exon | 51023334 | 51024051 | 51023334 | ID=Msa0210680-mRNA-1:exon:14137;Parent=Msa0210680-mRNA-1 |
| chr2_1 | exon | 51024470 | 51024568 | 51024470 | ID=Msa0210680-mRNA-1:exon:14138;Parent=Msa0210680-mRNA-1 |
| chr2_1 | exon | 51025296 | 51025452 | 51025296 | ID=Msa0210680-mRNA-1:exon:14139;Parent=Msa0210680-mRNA-1 |
| chr2_1 | CDS | 51021915 | 51021955 | 51021915 | ID=Msa0210680-mRNA-1:cds;Parent=Msa0210680-mRNA-1 |
| chr2_1 | CDS | 51022135 | 51022301 | 51022135 | ID=Msa0210680-mRNA-1:cds;Parent=Msa0210680-mRNA-1 |
| chr2_1 | CDS | 51022843 | 51022912 | 51022843 | ID=Msa0210680-mRNA-1:cds;Parent=Msa0210680-mRNA-1 |
| chr2_1 | CDS | 51023044 | 51023156 | 51023044 | ID=Msa0210680-mRNA-1:cds;Parent=Msa0210680-mRNA-1 |
| chr2_1 | CDS | 51023334 | 51024051 | 51023334 | ID=Msa0210680-mRNA-1:cds;Parent=Msa0210680-mRNA-1 |
| chr2_1 | CDS | 51024470 | 51024568 | 51024470 | ID=Msa0210680-mRNA-1:cds;Parent=Msa0210680-mRNA-1 |
| chr2_1 | CDS | 51025296 | 51025452 | 51025296 | ID=Msa0210680-mRNA-1:cds;Parent=Msa0210680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
