AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0211100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0211100 MtrunA17_Chr2g0309891 96.542 347 11 1 1 347 1 346 0.0 701
Msa0211100 MtrunA17_Chr3g0109821 73.810 168 44 0 1 168 1 168 5.70e-88 278
Msa0211100 MtrunA17_Chr5g0433781 63.592 206 69 3 1 205 1 201 2.89e-86 273
Msa0211100 MtrunA17_Chr6g0481091 71.519 158 44 1 1 158 1 157 6.34e-83 251
Msa0211100 MtrunA17_Chr5g0400461 47.807 228 100 3 1 221 1 216 1.17e-67 216
Msa0211100 MtrunA17_Chr4g0054791 60.000 160 60 2 1 157 1 159 1.27e-63 204
Msa0211100 MtrunA17_Chr4g0056541 54.217 166 72 2 6 170 7 169 4.66e-62 202
Msa0211100 MtrunA17_Chr8g0372121 52.353 170 73 3 1 167 1 165 2.57e-61 198
Msa0211100 MtrunA17_Chr2g0318081 55.063 158 68 2 1 158 11 165 3.05e-60 197
Msa0211100 MtrunA17_Chr4g0018391 54.839 155 66 2 6 159 7 158 7.57e-60 196
Msa0211100 MtrunA17_Chr8g0359921 53.179 173 74 3 1 168 9 179 8.14e-60 195
Msa0211100 MtrunA17_Chr4g0042561 56.604 159 64 3 2 157 5 161 1.00e-59 193
Msa0211100 MtrunA17_Chr1g0197361 53.631 179 79 3 8 185 10 185 3.25e-59 200
Msa0211100 MtrunA17_Chr1g0200561 57.516 153 61 2 6 157 19 168 3.75e-59 194
Msa0211100 MtrunA17_Chr5g0417791 55.030 169 70 4 4 168 1 167 4.23e-59 191
Msa0211100 MtrunA17_Chr7g0252971 52.273 176 70 4 6 169 8 181 5.65e-59 193
Msa0211100 MtrunA17_Chr5g0405211 56.209 153 63 2 6 157 8 157 5.66e-59 194
Msa0211100 MtrunA17_Chr4g0017921 55.556 153 63 2 6 157 8 156 9.35e-59 193
Msa0211100 MtrunA17_Chr3g0092671 53.333 180 80 3 8 186 7 183 9.70e-59 198
Msa0211100 MtrunA17_Chr1g0201021 46.696 227 111 5 4 229 17 234 1.38e-58 198
Msa0211100 MtrunA17_Chr8g0384721 40.580 276 123 8 4 265 5 253 4.56e-58 189
Msa0211100 MtrunA17_Chr1g0197351 57.233 159 63 1 5 158 41 199 4.58e-58 195
Msa0211100 MtrunA17_Chr2g0318101 50.820 183 74 5 5 173 14 194 5.62e-58 191
Msa0211100 MtrunA17_Chr6g0453451 56.774 155 62 3 6 158 20 171 1.12e-57 189
Msa0211100 MtrunA17_Chr3g0130731 55.000 160 67 3 4 161 5 161 1.30e-57 188
Msa0211100 MtrunA17_Chr2g0309331 53.846 156 67 3 4 157 8 160 1.40e-57 190
Msa0211100 MtrunA17_Chr5g0398971 55.128 156 66 3 6 159 7 160 1.95e-57 189
Msa0211100 MtrunA17_Chr5g0428991 52.105 190 78 3 6 188 25 208 1.97e-57 196
Msa0211100 MtrunA17_Chr6g0484441 57.143 154 61 2 6 159 5 153 3.95e-57 188
Msa0211100 MtrunA17_Chr3g0124761 46.121 232 107 7 4 225 5 228 5.04e-57 187
Msa0211100 MtrunA17_Chr2g0316971 59.615 156 58 3 6 158 23 176 5.28e-57 189
Msa0211100 MtrunA17_Chr2g0312321 56.098 164 68 2 1 164 6 165 8.46e-57 187
Msa0211100 MtrunA17_Chr4g0060931 55.000 160 61 3 4 158 15 168 1.66e-56 187
Msa0211100 MtrunA17_Chr8g0364791 54.777 157 70 1 1 157 1 156 2.85e-56 189
Msa0211100 MtrunA17_Chr3g0128151 57.233 159 57 2 5 158 21 173 3.66e-56 192
Msa0211100 MtrunA17_Chr3g0130101 55.333 150 66 1 8 157 9 157 5.48e-56 186
Msa0211100 MtrunA17_Chr3g0091921 56.051 157 66 2 4 159 14 168 6.28e-56 184
Msa0211100 MtrunA17_Chr1g0147421 57.962 157 58 5 5 158 26 177 1.57e-55 185
Msa0211100 MtrunA17_Chr6g0453131 54.321 162 63 4 6 158 15 174 4.00e-55 185
Msa0211100 MtrunA17_Chr3g0128111 48.205 195 81 4 9 189 45 233 4.20e-55 180
Msa0211100 MtrunA17_Chr8g0346001 49.102 167 76 3 6 163 15 181 1.29e-54 184
Msa0211100 MtrunA17_Chr4g0047841 49.153 177 64 4 6 158 15 189 2.37e-54 181
Msa0211100 MtrunA17_Chr3g0139331 55.769 156 62 3 5 158 10 160 4.58e-54 181
Msa0211100 MtrunA17_Chr6g0461661 40.800 250 129 7 3 247 15 250 1.02e-53 181
Msa0211100 MtrunA17_Chr7g0214071 53.448 174 70 5 4 175 13 177 1.44e-53 177
Msa0211100 MtrunA17_Chr8g0384201 52.229 157 74 1 1 157 1 156 1.59e-53 183
Msa0211100 MtrunA17_Chr2g0326361 48.555 173 78 4 5 170 13 181 2.12e-53 178
Msa0211100 MtrunA17_Chr1g0183741 54.194 155 62 3 5 157 9 156 7.70e-52 173
Msa0211100 MtrunA17_Chr8g0361731 50.932 161 67 4 8 158 16 174 8.13e-52 176
Msa0211100 MtrunA17_Chr7g0253011 51.534 163 72 3 4 161 15 175 9.99e-52 176
Msa0211100 MtrunA17_Chr7g0261411 54.902 153 60 3 5 155 9 154 3.24e-51 172
Msa0211100 MtrunA17_Chr5g0417001 51.250 160 67 4 8 158 16 173 3.70e-51 174
Msa0211100 MtrunA17_Chr3g0144271 56.579 152 61 3 6 154 23 172 6.41e-50 172
Msa0211100 MtrunA17_Chr4g0076731 51.316 152 68 3 8 158 56 202 1.30e-49 171
Msa0211100 MtrunA17_Chr7g0263931 49.686 159 73 3 4 157 9 165 2.42e-49 168
Msa0211100 MtrunA17_Chr7g0217721 57.778 135 51 2 9 143 22 150 9.05e-48 164
Msa0211100 MtrunA17_Chr2g0311651 46.988 166 73 4 8 159 24 188 3.65e-46 159
Msa0211100 MtrunA17_Chr2g0311661 43.750 192 86 6 8 178 23 213 1.25e-45 157
Msa0211100 MtrunA17_Chr7g0217711 53.571 140 59 2 4 143 17 150 3.48e-45 152
Msa0211100 MtrunA17_Chr4g0038751 42.690 171 84 4 8 172 17 179 1.56e-43 152
Msa0211100 MtrunA17_Chr8g0345671 49.342 152 67 4 6 154 11 155 5.49e-43 153
Msa0211100 MtrunA17_Chr5g0442771 44.720 161 76 3 8 157 20 178 8.04e-42 148
Msa0211100 MtrunA17_Chr8g0345691 47.368 152 70 4 6 154 12 156 1.10e-39 145
Msa0211100 MtrunA17_Chr2g0321741 50.376 133 57 2 26 158 12 135 4.38e-39 142
Msa0211100 MtrunA17_Chr8g0345711 52.308 130 56 4 6 131 12 139 1.65e-38 135
Msa0211100 MtrunA17_Chr4g0026141 45.513 156 79 5 6 155 5 160 7.75e-38 136
Msa0211100 MtrunA17_Chr8g0385991 43.226 155 78 3 6 154 14 164 6.97e-37 132
Msa0211100 MtrunA17_Chr3g0131911 43.210 162 77 4 6 157 14 170 1.32e-35 129
Msa0211100 MtrunA17_Chr8g0345731 48.485 132 61 4 6 131 24 154 3.02e-35 126
Msa0211100 MtrunA17_Chr2g0321631 43.038 158 79 6 7 155 5 160 2.96e-34 126
Msa0211100 MtrunA17_Chr7g0266701 40.244 164 87 6 5 158 3 165 6.22e-33 123
Msa0211100 MtrunA17_Chr8g0345741 39.375 160 80 5 17 173 2 147 1.36e-31 116
Msa0211100 MtrunA17_Chr4g0050701 41.509 159 76 4 6 157 11 159 1.23e-30 115
Msa0211100 MtrunA17_Chr8g0345721 39.130 161 65 4 3 131 32 191 5.67e-30 114
Msa0211100 MtrunA17_Chr8g0345701 41.667 144 64 5 5 131 6 146 1.58e-29 111
Msa0211100 MtrunA17_Chr3g0113001 53.398 103 38 2 61 157 18 116 4.03e-29 114
Msa0211100 MtrunA17_Chr3g0113031 53.333 90 39 1 71 157 3 92 1.06e-24 101
Msa0211100 MtrunA17_Chr7g0243371 48.980 98 46 2 56 149 12 109 1.56e-24 96.7
Msa0211100 MtrunA17_Chr7g0251651 33.758 157 97 4 4 159 16 166 4.56e-22 92.4
Msa0211100 MtrunA17_Chr8g0384351 35.897 156 77 7 2 157 6 138 1.25e-19 85.5
Msa0211100 MtrunA17_Chr7g0251661 33.077 130 85 2 2 131 6 133 1.52e-18 81.6
Msa0211100 MtrunA17_Chr7g0251671 29.299 157 105 5 6 159 10 163 2.82e-16 75.5
Msa0211100 MtrunA17_Chr3g0130321 27.439 164 100 4 4 156 5 160 6.63e-16 75.5
Msa0211100 MtrunA17_Chr1g0194791 61.702 47 17 1 8 53 48 94 8.96e-14 66.6
Msa0211100 MtrunA17_Chr3g0113011 55.102 49 22 0 4 52 17 65 4.12e-13 63.9
Msa0211100 MtrunA17_Chr8g0389661 32.051 156 74 7 4 133 45 194 2.87e-11 64.3
Msa0211100 MtrunA17_Chr3g0113041 58.140 43 18 0 10 52 23 65 4.92e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0211100 AT1G54330.1 50.000 334 124 7 1 333 1 292 5.44e-97 290
Msa0211100 AT3G17730.1 72.093 172 46 2 1 172 1 170 5.11e-87 262
Msa0211100 AT3G03200.1 72.956 159 43 0 1 159 1 159 4.38e-86 268
Msa0211100 AT5G17260.1 69.412 170 51 1 1 170 1 169 2.31e-85 266
Msa0211100 AT1G65910.1 70.455 176 48 3 1 176 1 172 1.82e-84 268
Msa0211100 AT5G46590.1 57.229 166 69 2 1 164 1 166 3.71e-67 213
Msa0211100 AT4G17980.1 59.877 162 60 3 1 158 1 161 7.04e-67 211
Msa0211100 AT4G17980.2 59.877 162 60 3 1 158 1 161 1.06e-66 212
Msa0211100 AT3G10480.1 47.111 225 109 3 1 216 22 245 5.29e-65 213
Msa0211100 AT3G10490.1 56.000 175 71 1 5 173 26 200 1.02e-64 205
Msa0211100 AT3G10490.2 46.983 232 111 4 5 225 26 256 2.79e-64 211
Msa0211100 AT3G10480.2 47.111 225 108 4 1 216 22 244 1.29e-63 209
Msa0211100 AT5G46590.2 59.459 148 59 1 1 147 1 148 3.09e-63 203
Msa0211100 AT4G27410.2 56.962 158 65 2 1 158 9 163 2.23e-62 201
Msa0211100 AT3G10500.1 60.127 158 62 1 5 162 8 164 3.86e-62 207
Msa0211100 AT1G32510.1 55.758 165 66 1 1 158 1 165 4.29e-62 200
Msa0211100 AT5G66300.1 54.878 164 71 2 5 167 11 172 6.43e-62 200
Msa0211100 AT5G04410.1 58.861 158 64 1 5 162 8 164 1.51e-60 204
Msa0211100 AT3G15500.1 56.962 158 63 3 1 157 9 162 1.65e-59 194
Msa0211100 AT3G10480.3 49.215 191 64 1 1 158 22 212 2.54e-59 199
Msa0211100 AT4G10350.1 57.792 154 61 3 6 157 9 160 6.83e-59 193
Msa0211100 AT1G52890.1 52.571 175 72 4 1 174 9 173 9.27e-59 192
Msa0211100 AT4G27410.3 52.023 173 67 3 1 158 9 180 1.11e-58 192
Msa0211100 AT1G71930.2 56.051 157 63 3 5 159 8 160 1.15e-58 192
Msa0211100 AT1G71930.1 56.051 157 63 3 5 159 8 160 1.15e-58 192
Msa0211100 AT2G18060.3 53.216 171 73 4 1 167 1 168 2.00e-58 193
Msa0211100 AT2G18060.1 53.216 171 73 4 1 167 1 168 2.00e-58 193
Msa0211100 AT1G33280.1 55.556 153 63 2 6 157 8 156 8.59e-58 189
Msa0211100 AT4G35580.3 57.595 158 56 2 5 157 8 159 1.26e-57 195
Msa0211100 AT4G35580.1 57.595 158 56 2 5 157 8 159 1.41e-57 194
Msa0211100 AT4G35580.2 57.595 158 56 2 5 157 8 159 1.46e-57 195
Msa0211100 AT3G04070.2 51.515 165 67 4 5 158 9 171 1.78e-57 190
Msa0211100 AT4G36160.1 55.844 154 64 3 5 157 9 159 1.96e-57 191
Msa0211100 AT4G36160.3 55.844 154 64 3 5 157 9 159 1.96e-57 191
Msa0211100 AT4G36160.2 55.844 154 64 3 5 157 13 163 2.03e-57 191
Msa0211100 AT1G69490.1 55.769 156 64 2 5 157 8 161 2.14e-57 187
Msa0211100 AT1G62700.1 54.194 155 67 2 6 159 7 158 2.17e-57 191
Msa0211100 AT1G62700.2 54.194 155 67 2 6 159 7 158 2.17e-57 191
Msa0211100 AT1G12260.2 52.258 155 70 2 6 159 7 158 2.52e-57 189
Msa0211100 AT1G12260.1 52.258 155 70 2 6 159 7 158 4.54e-57 190
Msa0211100 AT1G33060.1 56.329 158 58 2 5 157 23 174 6.57e-57 196
Msa0211100 AT1G33060.2 56.329 158 58 2 5 157 23 174 6.89e-57 196
Msa0211100 AT5G61430.1 36.474 329 170 11 4 321 14 314 1.01e-56 187
Msa0211100 AT5G39610.1 56.604 159 58 3 4 157 18 170 1.08e-56 186
Msa0211100 AT3G18400.1 55.844 154 64 2 5 158 4 153 1.13e-56 187
Msa0211100 AT5G07680.1 54.819 166 69 3 4 165 15 178 1.15e-56 187
Msa0211100 AT5G07680.2 54.819 166 69 3 4 165 1 164 1.33e-56 187
Msa0211100 AT5G08790.1 56.329 158 62 3 4 157 5 159 1.58e-56 186
Msa0211100 AT2G24430.2 57.962 157 58 4 5 158 15 166 3.29e-56 186
Msa0211100 AT2G24430.1 57.962 157 58 4 5 158 15 166 3.29e-56 186
Msa0211100 AT5G53950.1 58.434 166 64 3 6 168 17 180 3.44e-56 187
Msa0211100 AT1G76420.1 58.710 155 58 3 6 158 22 172 3.84e-56 186
Msa0211100 AT1G56010.2 55.828 163 67 3 1 160 14 174 1.08e-55 185
Msa0211100 AT3G29035.1 57.516 153 62 2 4 155 22 172 5.25e-55 183
Msa0211100 AT3G04070.1 46.961 181 67 4 5 158 9 187 5.97e-55 184
Msa0211100 AT3G15170.1 48.058 206 93 4 6 208 20 214 7.52e-55 182
Msa0211100 AT2G46770.1 41.333 225 98 5 6 217 16 219 8.59e-55 184
Msa0211100 AT5G62380.2 52.258 155 70 2 6 159 7 158 1.24e-54 182
Msa0211100 AT5G62380.1 52.258 155 70 2 6 159 7 158 1.24e-54 182
Msa0211100 AT3G12977.1 53.165 158 72 1 1 158 13 168 1.74e-54 180
Msa0211100 AT5G63790.1 54.375 160 66 3 2 157 46 202 1.79e-54 181
Msa0211100 AT1G01720.1 56.051 157 63 4 4 157 5 158 2.07e-54 180
Msa0211100 AT5G63790.2 54.375 160 66 3 2 157 56 212 2.40e-54 181
Msa0211100 AT1G79580.3 52.564 156 68 3 4 157 15 166 2.55e-54 182
Msa0211100 AT1G79580.5 52.564 156 68 3 4 157 15 166 2.55e-54 182
Msa0211100 AT1G79580.4 52.564 156 68 3 4 157 15 166 2.55e-54 182
Msa0211100 AT1G79580.2 52.564 156 68 3 4 157 15 166 2.55e-54 182
Msa0211100 AT1G79580.1 52.564 156 68 3 4 157 15 166 2.55e-54 182
Msa0211100 AT3G49530.2 42.857 238 107 7 5 227 12 235 6.61e-54 182
Msa0211100 AT1G34190.1 47.027 185 90 2 8 185 18 201 7.84e-54 186
Msa0211100 AT5G24590.2 53.797 158 71 2 1 157 8 164 8.41e-54 183
Msa0211100 AT1G34180.3 52.258 155 73 1 8 162 18 171 1.05e-53 183
Msa0211100 AT3G49530.1 42.857 238 107 7 5 227 12 235 1.18e-53 183
Msa0211100 AT5G09330.5 35.110 319 169 5 1 289 1 311 1.82e-53 183
Msa0211100 AT5G09330.2 35.110 319 169 5 1 289 1 311 1.82e-53 183
Msa0211100 AT5G09330.4 35.110 319 169 5 1 289 1 311 1.82e-53 183
Msa0211100 AT5G09330.3 35.110 319 169 5 1 289 1 311 1.82e-53 183
Msa0211100 AT5G09330.1 35.110 319 169 5 1 289 1 311 1.82e-53 183
Msa0211100 AT5G64060.1 51.899 158 75 1 1 158 1 157 1.97e-53 180
Msa0211100 AT3G61910.1 49.405 168 66 3 6 157 11 175 2.00e-53 179
Msa0211100 AT3G15510.1 48.634 183 73 5 10 180 21 194 4.61e-53 179
Msa0211100 AT1G32770.1 49.080 163 71 3 6 157 16 177 4.76e-53 179
Msa0211100 AT2G33480.1 54.545 154 64 2 4 157 13 160 4.96e-53 176
Msa0211100 AT5G18270.1 55.844 154 64 3 6 157 21 172 6.01e-53 178
Msa0211100 AT1G77450.1 52.353 170 76 4 2 169 6 172 6.46e-53 175
Msa0211100 AT1G34180.1 52.258 155 73 1 8 162 18 171 8.73e-53 183
Msa0211100 AT2G33480.2 54.545 154 62 3 4 157 13 158 2.23e-52 174
Msa0211100 AT1G61110.1 52.023 173 64 6 6 163 16 184 2.31e-52 176
Msa0211100 AT5G18270.2 55.195 154 65 3 6 157 21 172 2.75e-52 176
Msa0211100 AT5G39820.1 44.693 179 75 3 8 164 22 198 2.03e-51 174
Msa0211100 AT1G26870.1 51.534 163 67 3 6 158 16 176 4.25e-51 175
Msa0211100 AT1G34180.4 48.503 167 73 2 8 162 18 183 1.47e-50 175
Msa0211100 AT1G34180.2 48.503 167 73 2 8 162 18 183 1.30e-49 175
Msa0211100 AT3G04060.1 51.205 166 77 3 6 169 20 183 3.20e-49 168
Msa0211100 AT2G02450.1 50.993 151 68 3 8 157 53 198 6.63e-49 169
Msa0211100 AT2G43000.1 50.955 157 72 2 2 158 17 168 7.09e-49 166
Msa0211100 AT2G27300.1 52.564 156 65 3 1 156 9 155 7.87e-49 167
Msa0211100 AT2G02450.2 50.993 151 68 3 8 157 53 198 8.09e-49 169
Msa0211100 AT3G44290.2 50.318 157 69 3 2 158 10 157 4.67e-48 162
Msa0211100 AT5G13180.1 54.487 156 62 4 4 157 12 160 8.80e-48 162
Msa0211100 AT3G44290.1 50.318 157 69 3 2 158 10 157 3.11e-47 163
Msa0211100 AT1G52880.1 52.500 160 63 4 10 158 21 178 1.52e-46 160
Msa0211100 AT1G32870.2 53.165 158 71 2 6 162 10 165 2.57e-46 165
Msa0211100 AT1G32870.1 53.165 158 71 2 6 162 10 165 2.63e-46 165
Msa0211100 AT5G22290.1 48.052 154 72 3 1 154 16 161 3.17e-46 160
Msa0211100 AT4G28530.1 49.708 171 59 5 6 157 10 172 4.12e-46 160
Msa0211100 AT1G32870.3 53.165 158 71 2 6 162 46 201 4.88e-46 165
Msa0211100 AT2G17040.1 44.586 157 76 3 8 161 8 156 1.80e-43 151
Msa0211100 AT5G04395.1 45.098 153 70 2 2 140 24 176 1.32e-41 144
Msa0211100 AT3G12910.1 45.833 168 72 5 8 159 23 187 4.94e-41 146
Msa0211100 AT1G56010.1 62.000 100 36 1 63 160 8 107 1.34e-36 133
Msa0211100 AT4G01520.1 40.385 156 82 4 4 154 2 151 1.37e-34 129
Msa0211100 AT5G61430.2 33.333 270 143 11 63 321 8 251 1.61e-34 128
Msa0211100 AT4G10350.2 58.333 96 37 2 63 157 20 113 2.87e-34 128
Msa0211100 AT3G12977.2 58.947 95 39 0 63 157 20 114 2.06e-33 124
Msa0211100 AT4G01540.3 39.735 151 80 4 9 154 7 151 6.12e-32 124
Msa0211100 AT4G01540.4 39.735 151 80 4 9 154 7 151 6.81e-32 124
Msa0211100 AT4G01540.2 39.735 151 80 4 9 154 7 151 7.40e-32 124
Msa0211100 AT4G01540.1 39.735 151 80 4 9 154 7 151 1.12e-31 124
Msa0211100 AT2G33480.3 56.842 95 40 1 63 157 10 103 2.18e-31 118
Msa0211100 AT5G22380.1 40.385 156 87 5 9 158 8 163 4.33e-31 117
Msa0211100 AT4G01550.1 40.523 153 81 3 9 157 7 153 7.41e-31 122
Msa0211100 AT3G44350.2 38.217 157 93 4 6 158 5 161 9.99e-30 114
Msa0211100 AT3G04420.2 34.518 197 113 6 4 190 1 191 2.72e-29 114
Msa0211100 AT4G28530.2 53.211 109 33 2 6 98 10 116 5.23e-29 114
Msa0211100 AT1G02230.1 38.462 156 83 6 4 154 1 148 7.60e-29 114
Msa0211100 AT3G04420.1 34.518 197 113 6 4 190 1 191 1.18e-28 114
Msa0211100 AT5G64530.2 42.424 132 60 4 4 133 1 118 6.29e-28 107
Msa0211100 AT5G64530.1 42.424 132 60 4 4 133 1 118 1.70e-27 107
Msa0211100 AT3G10490.4 39.744 156 82 4 81 225 2 156 5.97e-26 106
Msa0211100 AT3G10490.3 39.744 156 82 4 81 225 2 156 5.97e-26 106
Msa0211100 AT1G02250.1 34.615 156 89 5 4 154 1 148 7.28e-26 106
Msa0211100 AT3G44350.1 35.897 156 96 4 6 157 5 160 1.04e-25 101
Msa0211100 AT1G02220.1 35.714 154 88 4 4 155 1 145 1.09e-25 106
Msa0211100 AT1G01010.1 36.478 159 77 6 9 154 6 153 7.50e-23 99.0
Msa0211100 AT3G55210.1 35.366 164 87 6 5 155 10 167 1.20e-20 90.9
Msa0211100 AT2G43000.2 48.864 88 45 0 70 157 2 89 1.36e-20 88.6
Msa0211100 AT3G56530.1 31.169 154 100 3 4 155 50 199 3.82e-19 87.0
Msa0211100 AT2G18060.2 48.780 82 39 2 86 167 2 80 1.83e-18 84.7
Msa0211100 AT5G50820.1 31.250 176 102 6 4 173 15 177 5.76e-18 81.3
Msa0211100 AT3G04430.1 34.459 148 83 5 12 147 6 151 7.32e-17 78.6
Msa0211100 AT5G14000.2 30.872 149 93 3 4 150 13 153 3.49e-16 75.5
Msa0211100 AT5G14000.1 32.576 132 83 2 4 133 13 140 4.00e-15 73.6
Msa0211100 AT5G22290.2 50.000 68 27 2 87 154 2 62 2.83e-14 72.0

Find 73 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACCCCTCAAATTTATTTC+AGG 0.177248 2_1:-51860922 Msa0211100:intron
CTATTTGTTCTTGACCCATT+TGG 0.270391 2_1:+51862931 None:intergenic
ATTTCTTCCCAGCAAGGATA+TGG 0.273941 2_1:-51862989 Msa0211100:CDS
GAGAAATCTTCCATCATTAA+AGG 0.281728 2_1:+51859046 None:intergenic
TGACTCTTCCACCAGGATTC+AGG 0.286267 2_1:-51863265 Msa0211100:CDS
GAGCAACAAGAGGAGGTTAT+TGG 0.300268 2_1:-51862909 Msa0211100:CDS
TTTGGATACTTTCTATCTCT+TGG 0.302528 2_1:+51862949 None:intergenic
GAAGCATCACATGGAAATTT+CGG 0.331197 2_1:+51861077 None:intergenic
AAGAGAAATAATGCAAACTA+TGG 0.337719 2_1:-51861129 Msa0211100:CDS
TGCTTCTCTCTCCTCTTTGA+AGG 0.370437 2_1:-51862737 Msa0211100:intron
GGAAAGCAACTGGAAAAGAT+AGG 0.389822 2_1:-51862888 Msa0211100:CDS
ATACCACTCCATATCCTTGC+TGG 0.403123 2_1:+51862981 None:intergenic
GGAGGTTATTGGAAAGCAAC+TGG 0.418101 2_1:-51862898 Msa0211100:CDS
AAGCAGTCATGAGATATATC+AGG 0.420403 2_1:+51858995 None:intergenic
AGAGATAGAAAGTATCCAAA+TGG 0.427350 2_1:-51862946 Msa0211100:CDS
AATCCTGGTGGAAGAGTCAT+TGG 0.436270 2_1:+51863269 None:intergenic
TCCATCATTAAAGGTGTTTG+AGG 0.440072 2_1:+51859055 None:intergenic
TCCTCAAACACCTTTAATGA+TGG 0.443999 2_1:-51859056 Msa0211100:CDS
ATATTCATGCATAACCCAAT+TGG 0.452860 2_1:+51862783 None:intergenic
CTCATGGGATTAGAACCAAT+TGG 0.456147 2_1:-51862798 Msa0211100:CDS
TTCAGCTATTTCTTATCCAA+TGG 0.459398 2_1:-51860952 Msa0211100:CDS
GTTACCTGAAATAAATTTGA+GGG 0.459661 2_1:+51860918 None:intergenic
TCTCTACAAATGTGAACCTT+GGG 0.462150 2_1:-51863150 Msa0211100:CDS
TCAGCTATTTCTTATCCAAT+GGG 0.470769 2_1:-51860951 Msa0211100:CDS
TAATGAAGAAGAACAAGTTA+AGG 0.479152 2_1:-51861225 Msa0211100:CDS
TCATGGGATTAGAACCAATT+GGG 0.493990 2_1:-51862797 Msa0211100:CDS
ATATTATTACATGTCTCTGT+TGG 0.494136 2_1:+51861023 None:intergenic
AACTCTCAAAAGAAACAAGT+TGG 0.494236 2_1:-51862859 Msa0211100:CDS
AAATACAGAGACTGTATGAA+TGG 0.500184 2_1:-51858962 Msa0211100:CDS
ATCTCTACAAATGTGAACCT+TGG 0.501203 2_1:-51863151 Msa0211100:CDS
GAGATAGAAAGTATCCAAAT+GGG 0.506144 2_1:-51862945 Msa0211100:CDS
GATATAGAAATACCTATGTA+TGG 0.506641 2_1:-51859097 Msa0211100:CDS
ATGTGATGCTTCTTCATCTG+AGG 0.512565 2_1:-51861066 Msa0211100:CDS
GCAACAAGTTCTTCATCTGT+AGG 0.512741 2_1:+51863236 None:intergenic
TGTTACCTGAAATAAATTTG+AGG 0.513454 2_1:+51860917 None:intergenic
GAGGGGTAGCTTATTCCCAT+TGG 0.525888 2_1:+51860936 None:intergenic
CAACAAGTTCTTCATCTGTA+GGG 0.531691 2_1:+51863237 None:intergenic
TACCACTCCATATCCTTGCT+GGG 0.532934 2_1:+51862982 None:intergenic
GGATACAAAGAAGGAAATGA+TGG 0.533065 2_1:-51861204 Msa0211100:CDS
CGACTTATTGAATCACATCC+TGG 0.543656 2_1:-51862760 Msa0211100:CDS
ACAAGTTAAGGATACAAAGA+AGG 0.543683 2_1:-51861213 Msa0211100:CDS
GAAAGCAACTGGAAAAGATA+GGG 0.558131 2_1:-51862887 Msa0211100:CDS
AAGACACTTGTTTATTACAA+AGG 0.562015 2_1:-51862829 Msa0211100:CDS
GTAGGGTGGAACCTGAATCC+TGG 0.565472 2_1:+51863254 None:intergenic
TGTGAACCTTGGGATTTACC+AGG 0.580071 2_1:-51863140 Msa0211100:intron
AAGATCATTTCTTCCCAGCA+AGG 0.580350 2_1:-51862995 Msa0211100:CDS
TCTTCATCTGAGGTCACTCA+AGG 0.581348 2_1:-51861056 Msa0211100:CDS
TTCCTCTCAAGATCATTCTG+TGG 0.587376 2_1:-51858912 Msa0211100:CDS
TACAAAGGTAGAGCACCTCA+TGG 0.591677 2_1:-51862814 Msa0211100:CDS
AATGTACCTGGTAAATCCCA+AGG 0.593393 2_1:+51863134 None:intergenic
TTATAGAAGCCACCATACAT+AGG 0.598247 2_1:+51859085 None:intergenic
TAATAATCATTCTATGGCAT+AGG 0.598308 2_1:+51858884 None:intergenic
GTCTTAGAAGAACAAGTGCA+AGG 0.598803 2_1:-51861182 Msa0211100:CDS
ACAAATAGAGCAACAAGAGG+AGG 0.599595 2_1:-51862916 Msa0211100:CDS
AGCCACAGAATGATCTTGAG+AGG 0.603596 2_1:+51858910 None:intergenic
CTTAATATATACCTTCAAAG+AGG 0.606342 2_1:+51862726 None:intergenic
TCTTAGAAGAACAAGTGCAA+GGG 0.610254 2_1:-51861181 Msa0211100:CDS
AAAGAGGAGAGAGAAGCACC+AGG 0.615946 2_1:+51862742 None:intergenic
TGTGCATGAAAATCCTCTGT+CGG 0.623048 2_1:+51860999 None:intergenic
GCTCCAATGACTCTTCCACC+AGG 0.623256 2_1:-51863272 Msa0211100:CDS
ACAAAGGTAGAGCACCTCAT+GGG 0.636035 2_1:-51862813 Msa0211100:CDS
TTACCTGAAATAAATTTGAG+GGG 0.638445 2_1:+51860919 None:intergenic
AGAACAAATAGAGCAACAAG+AGG 0.639297 2_1:-51862919 Msa0211100:CDS
TTCCCAGCAAGGATATGGAG+TGG 0.647720 2_1:-51862984 Msa0211100:CDS
ATAGAAATACCTATGTATGG+TGG 0.647987 2_1:-51859094 Msa0211100:CDS
CTTAGAAGAACAAGTGCAAG+GGG 0.650573 2_1:-51861180 Msa0211100:CDS
CAAGTTCTTCATCTGTAGGG+TGG 0.653084 2_1:+51863240 None:intergenic
CAAGGGGAAGACTCAAGTGG+TGG 0.675596 2_1:-51861164 Msa0211100:CDS
ATGTAATAATATACCGACAG+AGG 0.678009 2_1:-51861012 Msa0211100:CDS
GTGCAAGGGGAAGACTCAAG+TGG 0.679628 2_1:-51861167 Msa0211100:CDS
TCAGATGAAGAAGCATCACA+TGG 0.689871 2_1:+51861068 None:intergenic
GGGTGGAACCTGAATCCTGG+TGG 0.717244 2_1:+51863257 None:intergenic
CAATTGGTTCTAATCCCATG+AGG 0.731060 2_1:+51862799 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATTACATAATCAAAT+TGG - chr2_1:51860110-51860129 Msa0211100:intron 10.0%
!! TATAAAGAAAAAGAAAATAA+AGG + chr2_1:51860197-51860216 None:intergenic 10.0%
!!! ATTAATAGGAATTTAAAATA+GGG - chr2_1:51860462-51860481 Msa0211100:intron 10.0%
!! TTGAAATTAAAAAAAGATAA+AGG + chr2_1:51860537-51860556 None:intergenic 10.0%
!!! ATCTTTTTTTAATTTCAATT+TGG - chr2_1:51860539-51860558 Msa0211100:intron 10.0%
!! AATTTGATTAATACATAATA+GGG + chr2_1:51861654-51861673 None:intergenic 10.0%
!! AAATTTGATTAATACATAAT+AGG + chr2_1:51861655-51861674 None:intergenic 10.0%
!! ATTATGTATTAATCAAATTT+AGG - chr2_1:51861655-51861674 Msa0211100:intron 10.0%
!! TTATGTATTAATCAAATTTA+GGG - chr2_1:51861656-51861675 Msa0211100:intron 10.0%
!!! TTAATCTTCTTTTTTTAAGA+AGG - chr2_1:51859588-51859607 Msa0211100:intron 15.0%
!!! AAATTGAATTTTTTCATTGA+TGG - chr2_1:51859974-51859993 Msa0211100:intron 15.0%
!! ATCAATCTCAAAATAATATA+TGG + chr2_1:51860073-51860092 None:intergenic 15.0%
!! TATTAATGATTGTTTGTAAT+TGG + chr2_1:51860449-51860468 None:intergenic 15.0%
!! AATTACAAACAATCATTAAT+AGG - chr2_1:51860448-51860467 Msa0211100:intron 15.0%
!!! CATTAATAGGAATTTAAAAT+AGG - chr2_1:51860461-51860480 Msa0211100:intron 15.0%
!!! TTCATGATTTTATTTTCTTA+TGG + chr2_1:51860659-51860678 None:intergenic 15.0%
!!! ATCTTTTTTTCATTTCAATT+TGG + chr2_1:51860722-51860741 None:intergenic 15.0%
!! TTGAAATGAAAAAAAGATAA+AGG - chr2_1:51860724-51860743 Msa0211100:intron 15.0%
!!! AATTCATATACACTATTTTA+AGG + chr2_1:51860799-51860818 None:intergenic 15.0%
!! AATTGTTATGAAAAAATTTC+AGG - chr2_1:51860867-51860886 Msa0211100:intron 15.0%
!!! CAGAAAAAAGTTTTTTTTTA+GGG - chr2_1:51862019-51862038 Msa0211100:intron 15.0%
!!! AGAAAAAAGTTTTTTTTTAG+GGG - chr2_1:51862020-51862039 Msa0211100:intron 15.0%
!! AAGACATATACTATTAAAAT+AGG + chr2_1:51862095-51862114 None:intergenic 15.0%
!!! TAGTTTTACATGTAAATTTT+TGG - chr2_1:51862145-51862164 Msa0211100:intron 15.0%
!!! AAATTTTTGGATTTTATCAA+TGG - chr2_1:51862158-51862177 Msa0211100:intron 15.0%
!! AATTATATAAGACTATTATC+AGG + chr2_1:51862886-51862905 None:intergenic 15.0%
!! ATAATTATCGTCAATAAATT+TGG - chr2_1:51862940-51862959 Msa0211100:CDS 15.0%
!! TACTTAGAAAGAAAAATAAC+AGG - chr2_1:51858961-51858980 Msa0211100:CDS 20.0%
!! AAGTAAAAATATGAATGCAT+GGG + chr2_1:51859084-51859103 None:intergenic 20.0%
!! AAAGTAAAAATATGAATGCA+TGG + chr2_1:51859085-51859104 None:intergenic 20.0%
!! TGAAATAACTAAATAGAACT+AGG - chr2_1:51859662-51859681 Msa0211100:intron 20.0%
!! GAAATAACTAAATAGAACTA+GGG - chr2_1:51859663-51859682 Msa0211100:intron 20.0%
!! AAACATTTGTGTCATAATAA+AGG - chr2_1:51859712-51859731 Msa0211100:intron 20.0%
!! ACATAAACTCCTAATTAAAA+GGG + chr2_1:51859855-51859874 None:intergenic 20.0%
!! AACATAAACTCCTAATTAAA+AGG + chr2_1:51859856-51859875 None:intergenic 20.0%
!!! ATCTCATGAATTGTTTTTTA+GGG + chr2_1:51860002-51860021 None:intergenic 20.0%
!!! TATCTCATGAATTGTTTTTT+AGG + chr2_1:51860003-51860022 None:intergenic 20.0%
!!! TGTATTCAAATTTTGGATTA+AGG + chr2_1:51860045-51860064 None:intergenic 20.0%
!! TAATAGTAATATTACGTACA+CGG + chr2_1:51860300-51860319 None:intergenic 20.0%
!!! GTTATCTGAAATTAAGTTAA+GGG + chr2_1:51860506-51860525 None:intergenic 20.0%
!!! TGTTATCTGAAATTAAGTTA+AGG + chr2_1:51860507-51860526 None:intergenic 20.0%
!! CTTGAAAATGTATATGAAAA+TGG + chr2_1:51860575-51860594 None:intergenic 20.0%
!! CGTAAAAATTCATATGAAAA+TGG - chr2_1:51860686-51860705 Msa0211100:intron 20.0%
!!! TAACAATTCTTAGCTTTTAA+TGG + chr2_1:51860855-51860874 None:intergenic 20.0%
!! AATATTGTATGTAACATTTG+AGG + chr2_1:51861695-51861714 None:intergenic 20.0%
!!! AGAAAAGAGTTTTTTTTTAG+GGG + chr2_1:51861846-51861865 None:intergenic 20.0%
!!! CAGAAAAGAGTTTTTTTTTA+GGG + chr2_1:51861847-51861866 None:intergenic 20.0%
!!! TTTATTTTCTGTTGCAATTT+TGG + chr2_1:51861989-51862008 None:intergenic 20.0%
!!! CCTAAAAAAAAACTTTTTTC+TGG + chr2_1:51862021-51862040 None:intergenic 20.0%
!!! CCAGAAAAAAGTTTTTTTTT+AGG - chr2_1:51862018-51862037 Msa0211100:intron 20.0%
!!! AATAGGCTTAATTAATGTTT+TGG + chr2_1:51862078-51862097 None:intergenic 20.0%
!!! TTTTTTCTAGCTCTTAAAAA+AGG + chr2_1:51862835-51862854 None:intergenic 20.0%
!! AATCAATGTCAAAATATTAG+TGG + chr2_1:51862984-51863003 None:intergenic 20.0%
! ATAATTGTAAGAAATGTACC+TGG + chr2_1:51859051-51859070 None:intergenic 25.0%
! AAGACACTTGTTTATTACAA+AGG - chr2_1:51859341-51859360 Msa0211100:intron 25.0%
! CTTAATATATACCTTCAAAG+AGG + chr2_1:51859447-51859466 None:intergenic 25.0%
!!! ATGTTAGCTTGGTAATTTTT+AGG - chr2_1:51859614-51859633 Msa0211100:intron 25.0%
! ATTTGTGTCATAATAAAGGA+GGG - chr2_1:51859716-51859735 Msa0211100:intron 25.0%
!!! AATAGTTGATTTTGGTTGTT+AGG - chr2_1:51859740-51859759 Msa0211100:intron 25.0%
! CATAAACTCCTAATTAAAAG+GGG + chr2_1:51859854-51859873 None:intergenic 25.0%
! AACAAGATTGGAAAAGAAAA+GGG + chr2_1:51860324-51860343 None:intergenic 25.0%
! TAACAAGATTGGAAAAGAAA+AGG + chr2_1:51860325-51860344 None:intergenic 25.0%
! AAGCAAATGTATAACAAGAT+TGG + chr2_1:51860336-51860355 None:intergenic 25.0%
! AATATTGAACACTATGACAT+TGG + chr2_1:51860390-51860409 None:intergenic 25.0%
! CTTAATTTCAGATAACAGTT+TGG - chr2_1:51860510-51860529 Msa0211100:intron 25.0%
! TCATATGAAAATGGACAAAA+AGG - chr2_1:51860695-51860714 Msa0211100:intron 25.0%
!! TTAAGGCAAAATTACACTTT+TGG + chr2_1:51860782-51860801 None:intergenic 25.0%
!! GCTTTTAATGGTACAATTTT+TGG + chr2_1:51860843-51860862 None:intergenic 25.0%
!!! TCTTCTTCATTAGTTTTTGT+TGG + chr2_1:51860937-51860956 None:intergenic 25.0%
! TAATGAAGAAGAACAAGTTA+AGG - chr2_1:51860945-51860964 Msa0211100:CDS 25.0%
! AAGAGAAATAATGCAAACTA+TGG - chr2_1:51861041-51861060 Msa0211100:CDS 25.0%
! ATATTATTACATGTCTCTGT+TGG + chr2_1:51861150-51861169 None:intergenic 25.0%
!! TGAACTATTTTCTTCTTCAT+AGG + chr2_1:51861202-51861221 None:intergenic 25.0%
! TTACCTGAAATAAATTTGAG+GGG + chr2_1:51861254-51861273 None:intergenic 25.0%
! GTTACCTGAAATAAATTTGA+GGG + chr2_1:51861255-51861274 None:intergenic 25.0%
! TGTTACCTGAAATAAATTTG+AGG + chr2_1:51861256-51861275 None:intergenic 25.0%
! TAGAATTGATTGTGATTGTT+TGG - chr2_1:51861348-51861367 Msa0211100:intron 25.0%
! ATGAATCTATTAGATTGGTA+GGG - chr2_1:51861487-51861506 Msa0211100:intron 25.0%
! ACATATGAAAAAGCAAAAGT+GGG - chr2_1:51861511-51861530 Msa0211100:intron 25.0%
! CATTATTATATTGATCTGCT+TGG - chr2_1:51861547-51861566 Msa0211100:intron 25.0%
!! TAATGGCTTAATTACTGTTT+TGG - chr2_1:51861788-51861807 Msa0211100:intron 25.0%
!! TCACAACTTTTAGATACTTA+GGG + chr2_1:51861816-51861835 None:intergenic 25.0%
!! ATCACAACTTTTAGATACTT+AGG + chr2_1:51861817-51861836 None:intergenic 25.0%
!! GTATCTAAAAGTTGTGATTT+TGG - chr2_1:51861819-51861838 Msa0211100:intron 25.0%
!!! CCAGAAAAGAGTTTTTTTTT+AGG + chr2_1:51861848-51861867 None:intergenic 25.0%
!! CCTAAAAAAAAACTCTTTTC+TGG - chr2_1:51861845-51861864 Msa0211100:intron 25.0%
!! TTTACTTTCTGTTGCAATTT+TGG - chr2_1:51861877-51861896 Msa0211100:intron 25.0%
! TGCAACAGAAAATAAACTTA+AGG - chr2_1:51861993-51862012 Msa0211100:intron 25.0%
! GCAACAGAAAATAAACTTAA+GGG - chr2_1:51861994-51862013 Msa0211100:intron 25.0%
! AACTCAAAAATATGCTATGT+GGG + chr2_1:51862184-51862203 None:intergenic 25.0%
! AAACTCAAAAATATGCTATG+TGG + chr2_1:51862185-51862204 None:intergenic 25.0%
! TCAAATGAAATTATAGGGAA+TGG + chr2_1:51862322-51862341 None:intergenic 25.0%
! GTCAGTCAAATGAAATTATA+GGG + chr2_1:51862327-51862346 None:intergenic 25.0%
! AGTCAGTCAAATGAAATTAT+AGG + chr2_1:51862328-51862347 None:intergenic 25.0%
!! ACTATAGCTTTTGCTAAAAT+TGG + chr2_1:51862511-51862530 None:intergenic 25.0%
! AGCAATATATGCATTTGATT+GGG - chr2_1:51862581-51862600 Msa0211100:intron 25.0%
!!! GCATTTTTTTTTAATGATGC+AGG - chr2_1:51863051-51863070 Msa0211100:intron 25.0%
! GATATAGAAATACCTATGTA+TGG - chr2_1:51863073-51863092 Msa0211100:intron 25.0%
TTTGGATACTTTCTATCTCT+TGG + chr2_1:51859224-51859243 None:intergenic 30.0%
!! AGAGATAGAAAGTATCCAAA+TGG - chr2_1:51859224-51859243 Msa0211100:intron 30.0%
!! GAGATAGAAAGTATCCAAAT+GGG - chr2_1:51859225-51859244 Msa0211100:intron 30.0%
AACTCTCAAAAGAAACAAGT+TGG - chr2_1:51859311-51859330 Msa0211100:intron 30.0%
ATATTCATGCATAACCCAAT+TGG + chr2_1:51859390-51859409 None:intergenic 30.0%
TAAGAAGGAATATGTTAGCT+TGG - chr2_1:51859603-51859622 Msa0211100:intron 30.0%
!!! ACTAGGGTTTTGAAGAAAAT+AGG - chr2_1:51859679-51859698 Msa0211100:intron 30.0%
CATTTGTGTCATAATAAAGG+AGG - chr2_1:51859715-51859734 Msa0211100:intron 30.0%
!! GTTTTGATGAAAATAGCGTT+TGG - chr2_1:51859893-51859912 Msa0211100:intron 30.0%
! GGATCAGTGTATTCAAATTT+TGG + chr2_1:51860052-51860071 None:intergenic 30.0%
CTTAATTCCAGGTAACAATT+TGG + chr2_1:51860751-51860770 None:intergenic 30.0%
TGTTACCTGGAATTAAGTTA+AGG - chr2_1:51860754-51860773 Msa0211100:intron 30.0%
GTTACCTGGAATTAAGTTAA+GGG - chr2_1:51860755-51860774 Msa0211100:intron 30.0%
ACAAGTTAAGGATACAAAGA+AGG - chr2_1:51860957-51860976 Msa0211100:CDS 30.0%
ATGTAATAATATACCGACAG+AGG - chr2_1:51861158-51861177 Msa0211100:CDS 30.0%
!! TTCAGCTATTTCTTATCCAA+TGG - chr2_1:51861218-51861237 Msa0211100:CDS 30.0%
!! TCAGCTATTTCTTATCCAAT+GGG - chr2_1:51861219-51861238 Msa0211100:CDS 30.0%
GTGTCATGAATCTATTAGAT+TGG - chr2_1:51861482-51861501 Msa0211100:intron 30.0%
CATGAATCTATTAGATTGGT+AGG - chr2_1:51861486-51861505 Msa0211100:intron 30.0%
TGAATCTATTAGATTGGTAG+GGG - chr2_1:51861488-51861507 Msa0211100:intron 30.0%
GACATATGAAAAAGCAAAAG+TGG - chr2_1:51861510-51861529 Msa0211100:intron 30.0%
CATATGAAAAAGCAAAAGTG+GGG - chr2_1:51861512-51861531 Msa0211100:intron 30.0%
TGATTAATACATAATAGGGC+TGG + chr2_1:51861650-51861669 None:intergenic 30.0%
! ACAACTTTTAGATACTTAGG+GGG + chr2_1:51861814-51861833 None:intergenic 30.0%
! CACAACTTTTAGATACTTAG+GGG + chr2_1:51861815-51861834 None:intergenic 30.0%
GCAACAGAAAGTAAACTTAA+GGG + chr2_1:51861872-51861891 None:intergenic 30.0%
TGCAACAGAAAGTAAACTTA+AGG + chr2_1:51861873-51861892 None:intergenic 30.0%
! GTATCCAAAAGTTGTGATTT+TGG + chr2_1:51862047-51862066 None:intergenic 30.0%
! ATCACAACTTTTGGATACTT+AGG - chr2_1:51862049-51862068 Msa0211100:intron 30.0%
! TCACAACTTTTGGATACTTA+GGG - chr2_1:51862050-51862069 Msa0211100:intron 30.0%
GATCTTAAAGTGATGAAAGT+TGG - chr2_1:51862212-51862231 Msa0211100:intron 30.0%
GAGTAAAGAGATCTTTACTT+TGG + chr2_1:51862369-51862388 None:intergenic 30.0%
AAAGATGTATCTTAGTGGTT+TGG + chr2_1:51862444-51862463 None:intergenic 30.0%
AAGCTAAAGATGTATCTTAG+TGG + chr2_1:51862449-51862468 None:intergenic 30.0%
GAGCAATATATGCATTTGAT+TGG - chr2_1:51862580-51862599 Msa0211100:intron 30.0%
GCAATATATGCATTTGATTG+GGG - chr2_1:51862582-51862601 Msa0211100:intron 30.0%
ATTTCTATTGTAGAGGCTTT+AGG + chr2_1:51862688-51862707 None:intergenic 30.0%
!! TAGGGTTATTTCTATTGTAG+AGG + chr2_1:51862695-51862714 None:intergenic 30.0%
CAAGTGGCAAAAAAATAGTA+GGG + chr2_1:51862713-51862732 None:intergenic 30.0%
TTGGAACTAAAGTTACTCTT+GGG + chr2_1:51862743-51862762 None:intergenic 30.0%
ATTGGAACTAAAGTTACTCT+TGG + chr2_1:51862744-51862763 None:intergenic 30.0%
! AACTTTAGTTCCAATTAGCT+AGG - chr2_1:51862749-51862768 Msa0211100:CDS 30.0%
ATAGAAATACCTATGTATGG+TGG - chr2_1:51863076-51863095 Msa0211100:intron 30.0%
GAGAAATCTTCCATCATTAA+AGG + chr2_1:51863127-51863146 None:intergenic 30.0%
AAATACAGAGACTGTATGAA+TGG - chr2_1:51863208-51863227 Msa0211100:CDS 30.0%
CAACAAGTTCTTCATCTGTA+GGG + chr2_1:51858936-51858955 None:intergenic 35.0%
ATCTCTACAAATGTGAACCT+TGG - chr2_1:51859019-51859038 Msa0211100:CDS 35.0%
TCTCTACAAATGTGAACCTT+GGG - chr2_1:51859020-51859039 Msa0211100:CDS 35.0%
CTATTTGTTCTTGACCCATT+TGG + chr2_1:51859242-51859261 None:intergenic 35.0%
AGAACAAATAGAGCAACAAG+AGG - chr2_1:51859251-51859270 Msa0211100:intron 35.0%
GAAAGCAACTGGAAAAGATA+GGG - chr2_1:51859283-51859302 Msa0211100:intron 35.0%
TCATGGGATTAGAACCAATT+GGG - chr2_1:51859373-51859392 Msa0211100:intron 35.0%
!! AGGAGGGAAATAGTTGATTT+TGG - chr2_1:51859732-51859751 Msa0211100:intron 35.0%
TTGCTGTATACAAACAGTAG+CGG - chr2_1:51859763-51859782 Msa0211100:intron 35.0%
!! TGTGTTGTCCCCTTTTAATT+AGG - chr2_1:51859843-51859862 Msa0211100:intron 35.0%
TTAAGGCAAGCACTAAACAA+TGG + chr2_1:51860028-51860047 None:intergenic 35.0%
AGAACAAGGTTCAAACATGA+CGG + chr2_1:51860137-51860156 None:intergenic 35.0%
TGTTTGAACCTTGTTCTACA+AGG - chr2_1:51860140-51860159 Msa0211100:intron 35.0%
GAACATATAGTGACTAGTGT+AGG + chr2_1:51860175-51860194 None:intergenic 35.0%
TAAAGGACCAAATTGTTACC+TGG - chr2_1:51860741-51860760 Msa0211100:intron 35.0%
! TTTGGTGTAGTCAAAAGCAA+TGG + chr2_1:51860825-51860844 None:intergenic 35.0%
GGATACAAAGAAGGAAATGA+TGG - chr2_1:51860966-51860985 Msa0211100:CDS 35.0%
TCTTAGAAGAACAAGTGCAA+GGG - chr2_1:51860989-51861008 Msa0211100:CDS 35.0%
! GAAGCATCACATGGAAATTT+CGG + chr2_1:51861096-51861115 None:intergenic 35.0%
CTACCCCTCAAATTTATTTC+AGG - chr2_1:51861248-51861267 Msa0211100:CDS 35.0%
TGCTACAAACATGGAGAAAA+AGG + chr2_1:51861586-51861605 None:intergenic 35.0%
GAGCATAAATGCTACAAACA+TGG + chr2_1:51861595-51861614 None:intergenic 35.0%
! CACAACTTTTGGATACTTAG+GGG - chr2_1:51862051-51862070 Msa0211100:intron 35.0%
! ACAACTTTTGGATACTTAGG+GGG - chr2_1:51862052-51862071 Msa0211100:intron 35.0%
!! GCTCACTTCTAAAATTCACT+TGG - chr2_1:51862270-51862289 Msa0211100:intron 35.0%
ATGGTGAAGGAAAGCTAAAT+TGG + chr2_1:51862303-51862322 None:intergenic 35.0%
GAAATTATAGGGAATGGTGA+AGG + chr2_1:51862316-51862335 None:intergenic 35.0%
!! TTTACTCCCATTTTTCCTCA+CGG - chr2_1:51862382-51862401 Msa0211100:intron 35.0%
AACAAACCGTGAGGAAAAAT+GGG + chr2_1:51862391-51862410 None:intergenic 35.0%
TAACAAACCGTGAGGAAAAA+TGG + chr2_1:51862392-51862411 None:intergenic 35.0%
!! ATTTTTCCTCACGGTTTGTT+AGG - chr2_1:51862391-51862410 Msa0211100:intron 35.0%
!! GTAGAGGCTTTAGGTTTAAA+AGG + chr2_1:51862679-51862698 None:intergenic 35.0%
GCAAGTGGCAAAAAAATAGT+AGG + chr2_1:51862714-51862733 None:intergenic 35.0%
ATAACTCATGCCTAGCTAAT+TGG + chr2_1:51862762-51862781 None:intergenic 35.0%
TTATAGAAGCCACCATACAT+AGG + chr2_1:51863088-51863107 None:intergenic 35.0%
TCCTCAAACACCTTTAATGA+TGG - chr2_1:51863114-51863133 Msa0211100:intron 35.0%
!! TCCATCATTAAAGGTGTTTG+AGG + chr2_1:51863118-51863137 None:intergenic 35.0%
AAGCAGTCATGAGATATATC+AGG + chr2_1:51863178-51863197 None:intergenic 35.0%
GCAACAAGTTCTTCATCTGT+AGG + chr2_1:51858937-51858956 None:intergenic 40.0%
AATGTACCTGGTAAATCCCA+AGG + chr2_1:51859039-51859058 None:intergenic 40.0%
AAGATCATTTCTTCCCAGCA+AGG - chr2_1:51859175-51859194 Msa0211100:intron 40.0%
ATTTCTTCCCAGCAAGGATA+TGG - chr2_1:51859181-51859200 Msa0211100:intron 40.0%
ACAAATAGAGCAACAAGAGG+AGG - chr2_1:51859254-51859273 Msa0211100:intron 40.0%
GGAAAGCAACTGGAAAAGAT+AGG - chr2_1:51859282-51859301 Msa0211100:intron 40.0%
!! CAATTGGTTCTAATCCCATG+AGG + chr2_1:51859374-51859393 None:intergenic 40.0%
CTCATGGGATTAGAACCAAT+TGG - chr2_1:51859372-51859391 Msa0211100:intron 40.0%
CGACTTATTGAATCACATCC+TGG - chr2_1:51859410-51859429 Msa0211100:intron 40.0%
ATGTGCATCCTTGTAGAACA+AGG + chr2_1:51860151-51860170 None:intergenic 40.0%
TTCTTATGCAAACAACGACG+AGG - chr2_1:51860609-51860628 Msa0211100:intron 40.0%
TGGTCCCTTAACTTAATTCC+AGG + chr2_1:51860762-51860781 None:intergenic 40.0%
GTCTTAGAAGAACAAGTGCA+AGG - chr2_1:51860988-51861007 Msa0211100:CDS 40.0%
CTTAGAAGAACAAGTGCAAG+GGG - chr2_1:51860990-51861009 Msa0211100:CDS 40.0%
!! TCAGATGAAGAAGCATCACA+TGG + chr2_1:51861105-51861124 None:intergenic 40.0%
ATGTGATGCTTCTTCATCTG+AGG - chr2_1:51861104-51861123 Msa0211100:CDS 40.0%
TGTGCATGAAAATCCTCTGT+CGG + chr2_1:51861174-51861193 None:intergenic 40.0%
GAAATGCAGAGTATAGGCAA+AGG + chr2_1:51861628-51861647 None:intergenic 40.0%
CGTCAAACAGTAAACTTAGG+GGG + chr2_1:51861922-51861941 None:intergenic 40.0%
CCGTCAAACAGTAAACTTAG+GGG + chr2_1:51861923-51861942 None:intergenic 40.0%
CCCCTAAGTTTACTGTTTGA+CGG - chr2_1:51861920-51861939 Msa0211100:intron 40.0%
CCCGTCAAACAGTAAACTTA+GGG + chr2_1:51861924-51861943 None:intergenic 40.0%
CCCTAAGTTTACTGTTTGAC+GGG - chr2_1:51861921-51861940 Msa0211100:intron 40.0%
CCTAAGTTTACTGTTTGACG+GGG - chr2_1:51861922-51861941 Msa0211100:intron 40.0%
! GGGACCAAAATCACAACTTT+TGG - chr2_1:51862040-51862059 Msa0211100:intron 40.0%
TTGAAACCTAACAAACCGTG+AGG + chr2_1:51862400-51862419 None:intergenic 40.0%
TTCCTCTCAAGATCATTCTG+TGG - chr2_1:51863258-51863277 Msa0211100:CDS 40.0%
AATCCTGGTGGAAGAGTCAT+TGG + chr2_1:51858904-51858923 None:intergenic 45.0%
CAAGTTCTTCATCTGTAGGG+TGG + chr2_1:51858933-51858952 None:intergenic 45.0%
TGTGAACCTTGGGATTTACC+AGG - chr2_1:51859030-51859049 Msa0211100:CDS 45.0%
TACCACTCCATATCCTTGCT+GGG + chr2_1:51859191-51859210 None:intergenic 45.0%
ATACCACTCCATATCCTTGC+TGG + chr2_1:51859192-51859211 None:intergenic 45.0%
GAGCAACAAGAGGAGGTTAT+TGG - chr2_1:51859261-51859280 Msa0211100:intron 45.0%
GGAGGTTATTGGAAAGCAAC+TGG - chr2_1:51859272-51859291 Msa0211100:intron 45.0%
! TACAAAGGTAGAGCACCTCA+TGG - chr2_1:51859356-51859375 Msa0211100:intron 45.0%
! ACAAAGGTAGAGCACCTCAT+GGG - chr2_1:51859357-51859376 Msa0211100:intron 45.0%
TGCTTCTCTCTCCTCTTTGA+AGG - chr2_1:51859433-51859452 Msa0211100:intron 45.0%
! TCTTCATCTGAGGTCACTCA+AGG - chr2_1:51861114-51861133 Msa0211100:CDS 45.0%
!! GTTGCAATTTTGGTCCTTCG+TGG - chr2_1:51861887-51861906 Msa0211100:intron 45.0%
CCCCGTCAAACAGTAAACTT+AGG + chr2_1:51861925-51861944 None:intergenic 45.0%
GGCCTGGAAAGCAAACTTAA+GGG - chr2_1:51861943-51861962 Msa0211100:intron 45.0%
GCCTGGAAAGCAAACTTAAG+GGG - chr2_1:51861944-51861963 Msa0211100:intron 45.0%
!! GTTGCAATTTTGGTCCTTCG+TGG + chr2_1:51861887-51861906 None:intergenic 45.0%
ACTCTTGGGAATAGTGCAAG+TGG + chr2_1:51862729-51862748 None:intergenic 45.0%
AGCCACAGAATGATCTTGAG+AGG + chr2_1:51863263-51863282 None:intergenic 45.0%
!! TTAATTAAATATATATATGA+TGG + chr2_1:51859126-51859145 None:intergenic 5.0%
!!! ATATATTTAACATATTTTAA+TGG - chr2_1:51861771-51861790 Msa0211100:intron 5.0%
TGACTCTTCCACCAGGATTC+AGG - chr2_1:51858905-51858924 Msa0211100:CDS 50.0%
TTCCCAGCAAGGATATGGAG+TGG - chr2_1:51859186-51859205 Msa0211100:intron 50.0%
!! AAAGAGGAGAGAGAAGCACC+AGG + chr2_1:51859431-51859450 None:intergenic 50.0%
GAGGGGTAGCTTATTCCCAT+TGG + chr2_1:51861237-51861256 None:intergenic 50.0%
GGGCTGGAAATGCAGAGTAT+AGG + chr2_1:51861634-51861653 None:intergenic 50.0%
GGGCCTGGAAAGCAAACTTA+AGG - chr2_1:51861942-51861961 Msa0211100:intron 50.0%
! GCCCCTTAAGTTTGCTTTCC+AGG + chr2_1:51861948-51861967 None:intergenic 50.0%
AGGGGCTAAAATTGCCACGA+AGG - chr2_1:51861962-51861981 Msa0211100:intron 50.0%
GCTCCAATGACTCTTCCACC+AGG - chr2_1:51858898-51858917 Msa0211100:CDS 55.0%
GTAGGGTGGAACCTGAATCC+TGG + chr2_1:51858919-51858938 None:intergenic 55.0%
GTGCAAGGGGAAGACTCAAG+TGG - chr2_1:51861003-51861022 Msa0211100:CDS 55.0%
CAAGGGGAAGACTCAAGTGG+TGG - chr2_1:51861006-51861025 Msa0211100:CDS 55.0%
GGGGGCTAAAATTGCCACGA+AGG + chr2_1:51861904-51861923 None:intergenic 55.0%
GTTTACTGTTTGACGGGGCC+TGG - chr2_1:51861927-51861946 Msa0211100:intron 55.0%
GGGTGGAACCTGAATCCTGG+TGG + chr2_1:51858916-51858935 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 51858895 51863297 51858895 ID=Msa0211100;Name=Msa0211100
chr2_1 mRNA 51858895 51863297 51858895 ID=Msa0211100-mRNA-1;Parent=Msa0211100;Name=Msa0211100-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.33|0|1|1|1|4|0|347
chr2_1 exon 51863141 51863297 51863141 ID=Msa0211100-mRNA-1:exon:14414;Parent=Msa0211100-mRNA-1
chr2_1 exon 51862738 51863018 51862738 ID=Msa0211100-mRNA-1:exon:14413;Parent=Msa0211100-mRNA-1
chr2_1 exon 51860923 51861303 51860923 ID=Msa0211100-mRNA-1:exon:14412;Parent=Msa0211100-mRNA-1
chr2_1 exon 51858895 51859119 51858895 ID=Msa0211100-mRNA-1:exon:14411;Parent=Msa0211100-mRNA-1
chr2_1 CDS 51863141 51863297 51863141 ID=Msa0211100-mRNA-1:cds;Parent=Msa0211100-mRNA-1
chr2_1 CDS 51862738 51863018 51862738 ID=Msa0211100-mRNA-1:cds;Parent=Msa0211100-mRNA-1
chr2_1 CDS 51860923 51861303 51860923 ID=Msa0211100-mRNA-1:cds;Parent=Msa0211100-mRNA-1
chr2_1 CDS 51858895 51859119 51858895 ID=Msa0211100-mRNA-1:cds;Parent=Msa0211100-mRNA-1
Gene Sequence

>Msa0211100

ATGGCTCCAATGACTCTTCCACCAGGATTCAGGTTCCACCCTACAGATGAAGAACTTGTTGCTTACTACTTAGAAAGAAAAATAACAGGAAGAACTATAGAGCTTGATATCATTGCAGAAGTTGATCTCTACAAATGTGAACCTTGGGATTTACCAGAAAGATCATTTCTTCCCAGCAAGGATATGGAGTGGTATTTTTATAGTCCAAGAGATAGAAAGTATCCAAATGGGTCAAGAACAAATAGAGCAACAAGAGGAGGTTATTGGAAAGCAACTGGAAAAGATAGGGCAGTGAACTCTCAAAAGAAACAAGTTGGAATGAAGAAGACACTTGTTTATTACAAAGGTAGAGCACCTCATGGGATTAGAACCAATTGGGTTATGCATGAATATCGACTTATTGAATCACATCCTGGTGCTTCTCTCTCCTCTTTGAAGGATTCATATTCATTGTGTCGAATTTTCAAGAAGACAATTCAAATTCCAACAAAAACTAATGAAGAAGAACAAGTTAAGGATACAAAGAAGGAAATGATGGTCTTAGAAGAACAAGTGCAAGGGGAAGACTCAAGTGGTGGCACTGAGATCTCAAGAGAAATAATGCAAACTATGGATGAAAAAGTTCTTAATCAAGATGAACATCCGAAATTTCCATGTGATGCTTCTTCATCTGAGGTCACTCAAGGAACATGTACACCAACAGAGACATGTAATAATATACCGACAGAGGATTTTCATGCACAATTTGCCTATGAAGAAGAAAATAGTTCAGCTATTTCTTATCCAATGGGAATAAGCTACCCCTCAAATTTATTTCAGGATATAGAAATACCTATGTATGGTGGCTTCTATAATCAATTTCCTCAAACACCTTTAATGATGGAAGATTTCTCACAAATAGAGACAAAATCAATAATGAAGCCTGATATATCTCATGACTGCTTTTTGTATGACAAATACAGAGACTGTATGAATGGAACACTTGAAGAAATCATCTCTTTATGTTCCTCTCAAGATCATTCTGTGGCTTTTCCTATGCCATAG
Protein sequence

>Msa0211100

MAPMTLPPGFRFHPTDEELVAYYLERKITGRTIELDIIAEVDLYKCEPWDLPERSFLPSKDMEWYFYSPRDRKYPNGSRTNRATRGGYWKATGKDRAVNSQKKQVGMKKTLVYYKGRAPHGIRTNWVMHEYRLIESHPGASLSSLKDSYSLCRIFKKTIQIPTKTNEEEQVKDTKKEMMVLEEQVQGEDSSGGTEISREIMQTMDEKVLNQDEHPKFPCDASSSEVTQGTCTPTETCNNIPTEDFHAQFAYEEENSSAISYPMGISYPSNLFQDIEIPMYGGFYNQFPQTPLMMEDFSQIETKSIMKPDISHDCFLYDKYRDCMNGTLEEIISLCSSQDHSVAFPMP*