Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0211620 | XP_039686567.1 | 95.785 | 261 | 11 | 0 | 2 | 262 | 5 | 265 | 8.36e-156 | 444 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0211620 | sp|Q8LCG7|NFYC2_ARATH | 86.154 | 130 | 14 | 2 | 79 | 207 | 55 | 181 | 2.67e-77 | 235 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0211620 | I3TAY1 | 95.785 | 261 | 11 | 0 | 2 | 262 | 5 | 265 | 3.99e-156 | 444 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0211620 | TF | NF-YC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0211620 | MtrunA17_Chr2g0310741 | 95.785 | 261 | 11 | 0 | 2 | 262 | 5 | 265 | 7.69e-160 | 444 |
| Msa0211620 | MtrunA17_Chr7g0272991 | 56.917 | 253 | 94 | 7 | 1 | 244 | 1 | 247 | 1.09e-79 | 241 |
| Msa0211620 | MtrunA17_Chr1g0191681 | 59.402 | 234 | 77 | 10 | 1 | 223 | 1 | 227 | 1.90e-73 | 224 |
| Msa0211620 | MtrunA17_Chr3g0132191 | 67.361 | 144 | 37 | 3 | 81 | 223 | 36 | 170 | 4.25e-62 | 194 |
| Msa0211620 | MtrunA17_Chr2g0288481 | 55.034 | 149 | 52 | 3 | 82 | 221 | 67 | 209 | 1.42e-52 | 171 |
| Msa0211620 | MtrunA17_Chr2g0318921 | 60.241 | 83 | 32 | 1 | 99 | 180 | 21 | 103 | 1.91e-30 | 110 |
| Msa0211620 | MtrunA17_Chr2g0318881 | 60.241 | 83 | 32 | 1 | 99 | 180 | 21 | 103 | 2.13e-30 | 110 |
| Msa0211620 | MtrunA17_Chr8g0376351 | 62.162 | 74 | 28 | 0 | 118 | 191 | 1 | 74 | 1.91e-26 | 99.0 |
| Msa0211620 | MtrunA17_Chr3g0081161 | 41.026 | 78 | 46 | 0 | 101 | 178 | 9 | 86 | 3.45e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0211620 | AT1G56170.1 | 86.154 | 130 | 14 | 2 | 79 | 207 | 55 | 181 | 2.71e-78 | 235 |
| Msa0211620 | AT1G56170.2 | 86.154 | 130 | 14 | 2 | 79 | 207 | 55 | 181 | 2.71e-78 | 235 |
| Msa0211620 | AT5G63470.2 | 58.128 | 203 | 66 | 5 | 38 | 231 | 20 | 212 | 2.58e-69 | 214 |
| Msa0211620 | AT5G63470.1 | 58.128 | 203 | 66 | 5 | 38 | 231 | 20 | 212 | 2.58e-69 | 214 |
| Msa0211620 | AT1G08970.3 | 71.528 | 144 | 38 | 3 | 82 | 223 | 62 | 204 | 5.82e-69 | 213 |
| Msa0211620 | AT1G08970.4 | 71.528 | 144 | 38 | 3 | 82 | 223 | 62 | 204 | 5.82e-69 | 213 |
| Msa0211620 | AT1G08970.2 | 71.528 | 144 | 38 | 3 | 82 | 223 | 62 | 204 | 5.82e-69 | 213 |
| Msa0211620 | AT1G08970.1 | 71.528 | 144 | 38 | 3 | 82 | 223 | 62 | 204 | 5.82e-69 | 213 |
| Msa0211620 | AT1G54830.2 | 69.388 | 147 | 33 | 3 | 82 | 223 | 52 | 191 | 4.46e-68 | 210 |
| Msa0211620 | AT1G54830.3 | 69.388 | 147 | 33 | 3 | 82 | 223 | 52 | 191 | 4.46e-68 | 210 |
| Msa0211620 | AT1G54830.1 | 69.388 | 147 | 33 | 3 | 82 | 223 | 52 | 191 | 4.46e-68 | 210 |
| Msa0211620 | AT3G48590.1 | 65.060 | 166 | 52 | 3 | 68 | 230 | 33 | 195 | 7.81e-68 | 210 |
| Msa0211620 | AT5G50480.1 | 47.879 | 165 | 70 | 4 | 78 | 240 | 35 | 185 | 1.29e-47 | 157 |
| Msa0211620 | AT5G27910.1 | 42.222 | 180 | 84 | 6 | 76 | 253 | 15 | 176 | 2.47e-40 | 138 |
| Msa0211620 | AT5G50490.1 | 39.429 | 175 | 93 | 4 | 69 | 241 | 8 | 171 | 8.83e-36 | 126 |
| Msa0211620 | AT5G50470.1 | 48.148 | 108 | 47 | 2 | 78 | 179 | 44 | 148 | 2.54e-30 | 113 |
| Msa0211620 | AT5G38140.1 | 45.000 | 100 | 51 | 2 | 79 | 177 | 48 | 144 | 2.15e-26 | 102 |
Find 78 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGTGGTGGCTCCTGTTGC+TGG | 0.253446 | 2_1:+53122798 | None:intergenic |
| TAGAGTTGACTTTGCGATCT+TGG | 0.263614 | 2_1:-53123138 | Msa0211620:CDS |
| TTTGCTCAATTTCTTGCATT+TGG | 0.264134 | 2_1:+53123290 | None:intergenic |
| ACTGTTCCCATGTTGGCTTC+TGG | 0.277594 | 2_1:-53123460 | Msa0211620:CDS |
| TCTTCTTTCAATTCATCTCT+TGG | 0.282962 | 2_1:+53123016 | None:intergenic |
| TACGCGCAAGTGGGAGAGTA+TGG | 0.334677 | 2_1:+53123251 | None:intergenic |
| ATGCGGCTGGAGGCTGTGTT+GGG | 0.338530 | 2_1:+53123413 | None:intergenic |
| TATATTGCTGCATGATCAAC+TGG | 0.341302 | 2_1:+53122878 | None:intergenic |
| ATCAACAGCTTCAAATGTTC+TGG | 0.346777 | 2_1:-53123318 | Msa0211620:CDS |
| GTTGGTGTTGCTGCTGTTGA+TGG | 0.352589 | 2_1:+53123341 | None:intergenic |
| GGTGGAAATGCTGTGCTTGC+TGG | 0.362971 | 2_1:+53123362 | None:intergenic |
| GTCCCACCACAACATCCTTT+AGG | 0.406073 | 2_1:-53122926 | Msa0211620:CDS |
| AATGCGGCTGGAGGCTGTGT+TGG | 0.408535 | 2_1:+53123412 | None:intergenic |
| TGTGGTGGGACATAATAATA+TGG | 0.412277 | 2_1:+53122938 | None:intergenic |
| TCAGCTGGAGCACCGATTAT+CGG | 0.426072 | 2_1:+53122965 | None:intergenic |
| CAACATCCTTTAGGTCCTAC+AGG | 0.429195 | 2_1:-53122917 | Msa0211620:CDS |
| AGCTTCAACTTCAATTTCCA+TGG | 0.432682 | 2_1:-53125865 | Msa0211620:exon |
| AAGCCTACTATTCCGATAAT+CGG | 0.435007 | 2_1:-53122977 | Msa0211620:CDS |
| AGTGAGAAGAATAGACCATT+TGG | 0.449073 | 2_1:+53123488 | None:intergenic |
| GTGCTTGCTGGTATGCGAAT+TGG | 0.457941 | 2_1:+53123374 | None:intergenic |
| CCACAGGAGGTCGAGGCTGC+TGG | 0.460527 | 2_1:+53122849 | None:intergenic |
| AAGTGCACACATCCAGCAAC+AGG | 0.468963 | 2_1:-53122810 | Msa0211620:CDS |
| TCAACAGCTTCAAATGTTCT+GGG | 0.490507 | 2_1:-53123317 | Msa0211620:CDS |
| GCTGGAGGCTGTGTTGGGGT+AGG | 0.495800 | 2_1:+53123418 | None:intergenic |
| CTCCTGTGGCTTTCATGCCA+TGG | 0.498225 | 2_1:-53122835 | Msa0211620:CDS |
| CGCACCAGGTACTAGCCAAA+TGG | 0.499512 | 2_1:-53123503 | Msa0211620:CDS |
| GCACCGATTATCGGAATAGT+AGG | 0.501513 | 2_1:+53122974 | None:intergenic |
| ATCATCCCTGTAGGACCTAA+AGG | 0.501857 | 2_1:+53122911 | None:intergenic |
| GAGCTTCTGCTGAAATCATC+CGG | 0.503953 | 2_1:+53123197 | None:intergenic |
| GAGTCTGTCTGTGGCTGTTG+TGG | 0.506073 | 2_1:+53122782 | None:intergenic |
| CTACCTGACTGTTCCCATGT+TGG | 0.506876 | 2_1:-53123467 | Msa0211620:CDS |
| AGGTCCTACAGGGATGATCA+TGG | 0.513342 | 2_1:-53122906 | Msa0211620:CDS |
| ATGAAAGCCACAGGAGGTCG+AGG | 0.520693 | 2_1:+53122842 | None:intergenic |
| AGAGATGAATTGAAAGAAGA+GGG | 0.526767 | 2_1:-53123013 | Msa0211620:CDS |
| TAATAATATGGAATATCAGC+TGG | 0.527976 | 2_1:+53122950 | None:intergenic |
| TCCTCTTGTTCTCTTCAGTG+TGG | 0.538251 | 2_1:+53123113 | None:intergenic |
| TCTGTCTGTGGCTGTTGTGG+TGG | 0.546304 | 2_1:+53122785 | None:intergenic |
| TGAAAGCCGATGAAGATGTC+CGG | 0.548255 | 2_1:-53123216 | Msa0211620:CDS |
| AAGCCAACATGGGAACAGTC+AGG | 0.549822 | 2_1:+53123464 | None:intergenic |
| GAATTGAAAGAAGAGGGGCT+TGG | 0.553111 | 2_1:-53123007 | Msa0211620:CDS |
| CTTGCTGGTATGCGAATTGG+TGG | 0.555433 | 2_1:+53123377 | None:intergenic |
| GCTTCAACTTCAATTTCCAT+GGG | 0.558456 | 2_1:-53125864 | Msa0211620:intron |
| GGTGTTGCTGCTGTTGATGG+TGG | 0.572770 | 2_1:+53123344 | None:intergenic |
| AATCATCCGGACATCTTCAT+CGG | 0.573019 | 2_1:+53123210 | None:intergenic |
| AGGTGTGCCAGAAGCCAACA+TGG | 0.576129 | 2_1:+53123453 | None:intergenic |
| AAGAGATGAATTGAAAGAAG+AGG | 0.576346 | 2_1:-53123014 | Msa0211620:CDS |
| GCGGAATTAGAGAATGCGGC+TGG | 0.581472 | 2_1:+53123400 | None:intergenic |
| TAGACCATTTGGCTAGTACC+TGG | 0.582406 | 2_1:+53123499 | None:intergenic |
| TCTGCGATCGGAGTCGCACC+AGG | 0.583461 | 2_1:-53123517 | Msa0211620:CDS |
| GACCATGGCATGAAAGCCAC+AGG | 0.584151 | 2_1:+53122833 | None:intergenic |
| GAAAGAAGAGGGGCTTGGAA+TGG | 0.586004 | 2_1:-53123002 | Msa0211620:CDS |
| GACCTAAAGGATGTTGTGGT+GGG | 0.590318 | 2_1:+53122924 | None:intergenic |
| CCAGCAGCCTCGACCTCCTG+TGG | 0.590845 | 2_1:-53122849 | Msa0211620:CDS |
| GGGGTAGGAACAGCTACAGC+AGG | 0.597736 | 2_1:+53123433 | None:intergenic |
| GGTCCTACAGGGATGATCAT+GGG | 0.598225 | 2_1:-53122905 | Msa0211620:CDS |
| TTTCCCATGATCATCCCTGT+AGG | 0.601110 | 2_1:+53122902 | None:intergenic |
| ACATTTGAAGCTGTTGATGT+TGG | 0.601353 | 2_1:+53123323 | None:intergenic |
| TGCGGCTGGAGGCTGTGTTG+GGG | 0.604131 | 2_1:+53123414 | None:intergenic |
| TCCACACTGAAGAGAACAAG+AGG | 0.607941 | 2_1:-53123114 | Msa0211620:CDS |
| CAGCAGCAACAATCTGCGAT+CGG | 0.614961 | 2_1:-53123529 | Msa0211620:CDS |
| GGTACAAGGTCAATGGTGGA+TGG | 0.615420 | 2_1:+53125897 | None:intergenic |
| ATTTATTAAGAGTCTGTCTG+TGG | 0.628344 | 2_1:+53122773 | None:intergenic |
| GTAGGACCTAAAGGATGTTG+TGG | 0.634993 | 2_1:+53122920 | None:intergenic |
| AAGCTGTATTGTGAGGTACA+AGG | 0.635993 | 2_1:+53125883 | None:intergenic |
| GAATTAGAGAATGCGGCTGG+AGG | 0.643197 | 2_1:+53123403 | None:intergenic |
| GGACCTAAAGGATGTTGTGG+TGG | 0.645250 | 2_1:+53122923 | None:intergenic |
| TGGATGTGTGCACTTGACCA+TGG | 0.646696 | 2_1:+53122818 | None:intergenic |
| TTGCTGGTATGCGAATTGGT+GGG | 0.649667 | 2_1:+53123378 | None:intergenic |
| ATTGTGAGGTACAAGGTCAA+TGG | 0.651278 | 2_1:+53125890 | None:intergenic |
| GTGGGCGGAATTAGAGAATG+CGG | 0.665564 | 2_1:+53123396 | None:intergenic |
| CTGGTATGCGAATTGGTGGG+CGG | 0.667066 | 2_1:+53123381 | None:intergenic |
| AACATCCTTTAGGTCCTACA+GGG | 0.669689 | 2_1:-53122916 | Msa0211620:CDS |
| GTGAGGTACAAGGTCAATGG+TGG | 0.674983 | 2_1:+53125893 | None:intergenic |
| CATGGCATGAAAGCCACAGG+AGG | 0.683115 | 2_1:+53122836 | None:intergenic |
| GAGATGAATTGAAAGAAGAG+GGG | 0.683256 | 2_1:-53123012 | Msa0211620:CDS |
| GGTGTGCCAGAAGCCAACAT+GGG | 0.687320 | 2_1:+53123454 | None:intergenic |
| ATATTGCTGCATGATCAACT+GGG | 0.690297 | 2_1:+53122879 | None:intergenic |
| GAAGTTGAAGCTGTATTGTG+AGG | 0.714630 | 2_1:+53125876 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAAAAGATAAATTGA+AGG | + | chr2_1:53124375-53124394 | None:intergenic | 10.0% |
| !!! | TTTTCTATTTTACTTTATTT+TGG | - | chr2_1:53124585-53124604 | Msa0211620:intron | 10.0% |
| !!! | TTTCTATTTTACTTTATTTT+GGG | - | chr2_1:53124586-53124605 | Msa0211620:intron | 10.0% |
| !!! | ATCTTATTGTTATCTTTTTT+TGG | - | chr2_1:53123098-53123117 | Msa0211620:CDS | 15.0% |
| !! | AACAAAATATTAACAATTAC+TGG | - | chr2_1:53123140-53123159 | Msa0211620:CDS | 15.0% |
| !! | TTAATATTTACTTATTTGTC+TGG | - | chr2_1:53123171-53123190 | Msa0211620:CDS | 15.0% |
| !! | AGTAAACAATAAGTAAATAT+TGG | + | chr2_1:53123260-53123279 | None:intergenic | 15.0% |
| !!! | ATTTTCCTATTTTCAAAATA+CGG | + | chr2_1:53124989-53125008 | None:intergenic | 15.0% |
| !!! | GATTACATCATTTTGTATAT+TGG | - | chr2_1:53122953-53122972 | Msa0211620:CDS | 20.0% |
| !!! | TTTAACTTTAATCTTCTCTT+AGG | - | chr2_1:53123048-53123067 | Msa0211620:CDS | 20.0% |
| !! | TTAACTTTAATCTTCTCTTA+GGG | - | chr2_1:53123049-53123068 | Msa0211620:CDS | 20.0% |
| !! | AACAATAAGTAAATATTGGA+GGG | + | chr2_1:53123256-53123275 | None:intergenic | 20.0% |
| !! | AAACAATAAGTAAATATTGG+AGG | + | chr2_1:53123257-53123276 | None:intergenic | 20.0% |
| !!! | TAATTTGTACATTGTTTCTT+TGG | - | chr2_1:53123298-53123317 | Msa0211620:CDS | 20.0% |
| !! | CAATTATCATGTTTATATTC+TGG | - | chr2_1:53123329-53123348 | Msa0211620:CDS | 20.0% |
| !! | TTTAAAAGATGTCAAGATAA+AGG | - | chr2_1:53123646-53123665 | Msa0211620:intron | 20.0% |
| !!! | ATTTTTAGTTTGATGAATTG+AGG | - | chr2_1:53123788-53123807 | Msa0211620:intron | 20.0% |
| !! | ATAATTTATACTTCTATTCC+TGG | - | chr2_1:53123982-53124001 | Msa0211620:intron | 20.0% |
| !! | TAATTTATACTTCTATTCCT+GGG | - | chr2_1:53123983-53124002 | Msa0211620:intron | 20.0% |
| !! | TGAATATTGTTAAATGCAAT+TGG | - | chr2_1:53124017-53124036 | Msa0211620:intron | 20.0% |
| !! | GATATTGTTTACAAACATAA+TGG | - | chr2_1:53124271-53124290 | Msa0211620:intron | 20.0% |
| !!! | TTTACAAACATAATGGATAA+TGG | - | chr2_1:53124278-53124297 | Msa0211620:intron | 20.0% |
| !! | TAAAATAGAAAATATGCAGA+AGG | + | chr2_1:53124577-53124596 | None:intergenic | 20.0% |
| !! | AAACTATTAACAATGAACTT+TGG | - | chr2_1:53124614-53124633 | Msa0211620:intron | 20.0% |
| !! | TCTTATAAGTTATATGTGTA+TGG | - | chr2_1:53124686-53124705 | Msa0211620:intron | 20.0% |
| !! | ATATAATATTCCAAACTTGA+AGG | + | chr2_1:53125072-53125091 | None:intergenic | 20.0% |
| !!! | AAATGATGTTTTTGATTTCT+TGG | - | chr2_1:53125680-53125699 | Msa0211620:intron | 20.0% |
| ! | TCTAAGCAATAAAGTAATGT+GGG | - | chr2_1:53123564-53123583 | Msa0211620:intron | 25.0% |
| ! | AATTTATACTTCTATTCCTG+GGG | - | chr2_1:53123984-53124003 | Msa0211620:intron | 25.0% |
| ! | CAATGGATAATTACAGTTTA+AGG | + | chr2_1:53124140-53124159 | None:intergenic | 25.0% |
| ! | CTTAAACTGTAATTATCCAT+TGG | - | chr2_1:53124138-53124157 | Msa0211620:intron | 25.0% |
| ! | ATTACATTTATCCATTCCAA+TGG | + | chr2_1:53124157-53124176 | None:intergenic | 25.0% |
| ! | AAACAATATCAAAACATGTG+TGG | + | chr2_1:53124261-53124280 | None:intergenic | 25.0% |
| ! | ATATCTCTTAGAATTGTACT+TGG | - | chr2_1:53124441-53124460 | Msa0211620:intron | 25.0% |
| ! | TTCATTTACAAAGTCATATC+AGG | + | chr2_1:53124919-53124938 | None:intergenic | 25.0% |
| ! | TTGGAATATTATATAACGTG+AGG | - | chr2_1:53125078-53125097 | Msa0211620:intron | 25.0% |
| ! | TACAGTTCTGTAAAAAGAAA+GGG | + | chr2_1:53125112-53125131 | None:intergenic | 25.0% |
| !! | TTTCTTTTTACAGAACTGTA+GGG | - | chr2_1:53125112-53125131 | Msa0211620:intron | 25.0% |
| ! | TAATAATATGGAATATCAGC+TGG | + | chr2_1:53125783-53125802 | None:intergenic | 25.0% |
| TAAGTAAATATTGGAGGGTT+TGG | + | chr2_1:53123251-53123270 | None:intergenic | 30.0% | |
| ! | TTGTACATTGTTTCTTTGGT+TGG | - | chr2_1:53123302-53123321 | Msa0211620:CDS | 30.0% |
| ! | TGTACATTGTTTCTTTGGTT+GGG | - | chr2_1:53123303-53123322 | Msa0211620:CDS | 30.0% |
| ACACCTACAATCAGAAATAT+CGG | + | chr2_1:53123412-53123431 | None:intergenic | 30.0% | |
| GTCTAAGCAATAAAGTAATG+TGG | - | chr2_1:53123563-53123582 | Msa0211620:intron | 30.0% | |
| CTAAGCAATAAAGTAATGTG+GGG | - | chr2_1:53123565-53123584 | Msa0211620:intron | 30.0% | |
| GATTCGTTAAATATCAAGCT+TGG | - | chr2_1:53123603-53123622 | Msa0211620:intron | 30.0% | |
| TTCATGTTAATCCTGATTAG+AGG | - | chr2_1:53123708-53123727 | Msa0211620:intron | 30.0% | |
| AAATTTCTTGACCTCTAATC+AGG | + | chr2_1:53123722-53123741 | None:intergenic | 30.0% | |
| TTGTGTAGATACCTTAATAC+TGG | + | chr2_1:53123883-53123902 | None:intergenic | 30.0% | |
| ACTGTAATTATCCATTGGAA+TGG | - | chr2_1:53124143-53124162 | Msa0211620:intron | 30.0% | |
| !! | ACAAACATAATGGATAATGG+TGG | - | chr2_1:53124281-53124300 | Msa0211620:intron | 30.0% |
| ! | GCCAAACTTTTCATTATGAT+AGG | - | chr2_1:53124305-53124324 | Msa0211620:intron | 30.0% |
| GCCTATCATAATGAAAAGTT+TGG | + | chr2_1:53124309-53124328 | None:intergenic | 30.0% | |
| ! | TCATAATGAGTAGTTCTATG+AGG | - | chr2_1:53124413-53124432 | Msa0211620:intron | 30.0% |
| TAGAAAATATGCAGAAGGAA+GGG | + | chr2_1:53124572-53124591 | None:intergenic | 30.0% | |
| ATAGAAAATATGCAGAAGGA+AGG | + | chr2_1:53124573-53124592 | None:intergenic | 30.0% | |
| TATGGTATAAGTTGCTTGTA+TGG | - | chr2_1:53124704-53124723 | Msa0211620:intron | 30.0% | |
| ! | TACTTGGCCTATTTTATACT+AGG | - | chr2_1:53124831-53124850 | Msa0211620:intron | 30.0% |
| TCAGGTTCCTAGTATAAAAT+AGG | + | chr2_1:53124841-53124860 | None:intergenic | 30.0% | |
| TCTATACATCTTTCAATCTC+AGG | + | chr2_1:53124859-53124878 | None:intergenic | 30.0% | |
| CTACAGTTCTGTAAAAAGAA+AGG | + | chr2_1:53125113-53125132 | None:intergenic | 30.0% | |
| ! | CTTTCTTTTTACAGAACTGT+AGG | - | chr2_1:53125111-53125130 | Msa0211620:intron | 30.0% |
| TTTGCTCAATTTCTTGCATT+TGG | + | chr2_1:53125443-53125462 | None:intergenic | 30.0% | |
| TCTTCTTTCAATTCATCTCT+TGG | + | chr2_1:53125717-53125736 | None:intergenic | 30.0% | |
| AAGAGATGAATTGAAAGAAG+AGG | - | chr2_1:53125716-53125735 | Msa0211620:intron | 30.0% | |
| AGAGATGAATTGAAAGAAGA+GGG | - | chr2_1:53125717-53125736 | Msa0211620:intron | 30.0% | |
| AGCTTCAACTTCAATTTCCA+TGG | - | chr2_1:53122865-53122884 | Msa0211620:CDS | 35.0% | |
| GCTTCAACTTCAATTTCCAT+GGG | - | chr2_1:53122866-53122885 | Msa0211620:CDS | 35.0% | |
| AAAAAAGCAGAACATACCCA+TGG | + | chr2_1:53122885-53122904 | None:intergenic | 35.0% | |
| TGTCTGACATGTGTAAGTAT+CGG | - | chr2_1:53123438-53123457 | Msa0211620:CDS | 35.0% | |
| ! | GAATTTAAAACCCTGCTCTA+TGG | + | chr2_1:53123755-53123774 | None:intergenic | 35.0% |
| !!! | AGGGTTTTAAATTCTGCTCT+TGG | - | chr2_1:53123761-53123780 | Msa0211620:intron | 35.0% |
| TTGTGATCTCTCCAGTATTA+AGG | - | chr2_1:53123869-53123888 | Msa0211620:intron | 35.0% | |
| AATGTGCAACACTATGAACT+TGG | - | chr2_1:53123926-53123945 | Msa0211620:intron | 35.0% | |
| ATGTGCAACACTATGAACTT+GGG | - | chr2_1:53123927-53123946 | Msa0211620:intron | 35.0% | |
| CATTCTTACTTCACGACAAA+AGG | + | chr2_1:53124076-53124095 | None:intergenic | 35.0% | |
| TATGGCCACAGTTAATTACA+TGG | + | chr2_1:53124467-53124486 | None:intergenic | 35.0% | |
| GTAATTAACTGTGGCCATAT+CGG | - | chr2_1:53124468-53124487 | Msa0211620:intron | 35.0% | |
| TGTATGGTTATCCTAAGCAT+CGG | - | chr2_1:53124720-53124739 | Msa0211620:intron | 35.0% | |
| ! | TTCACTGCAATAGCATTTTG+AGG | - | chr2_1:53124767-53124786 | Msa0211620:intron | 35.0% |
| ! | TCACTGCAATAGCATTTTGA+GGG | - | chr2_1:53124768-53124787 | Msa0211620:intron | 35.0% |
| AAACCACATGTTATCCTGAT+GGG | - | chr2_1:53124944-53124963 | Msa0211620:intron | 35.0% | |
| ! | AAGGTACTAGATTCTTACAG+AGG | + | chr2_1:53125053-53125072 | None:intergenic | 35.0% |
| ! | GAATCTAGTACCTTCAAGTT+TGG | - | chr2_1:53125059-53125078 | Msa0211620:intron | 35.0% |
| CTTATAGCATCAACTTGTCA+TGG | - | chr2_1:53125158-53125177 | Msa0211620:intron | 35.0% | |
| AGTGAGAAGAATAGACCATT+TGG | + | chr2_1:53125245-53125264 | None:intergenic | 35.0% | |
| ! | ACATTTGAAGCTGTTGATGT+TGG | + | chr2_1:53125410-53125429 | None:intergenic | 35.0% |
| ATCAACAGCTTCAAATGTTC+TGG | - | chr2_1:53125412-53125431 | Msa0211620:intron | 35.0% | |
| TCAACAGCTTCAAATGTTCT+GGG | - | chr2_1:53125413-53125432 | Msa0211620:intron | 35.0% | |
| ! | TTTTCTTTATACGCGCAAGT+GGG | + | chr2_1:53125491-53125510 | None:intergenic | 35.0% |
| ! | ATTTTCTTTATACGCGCAAG+TGG | + | chr2_1:53125492-53125511 | None:intergenic | 35.0% |
| GAGATGAATTGAAAGAAGAG+GGG | - | chr2_1:53125718-53125737 | Msa0211620:intron | 35.0% | |
| AAGCCTACTATTCCGATAAT+CGG | - | chr2_1:53125753-53125772 | Msa0211620:intron | 35.0% | |
| ! | TGTGGTGGGACATAATAATA+TGG | + | chr2_1:53125795-53125814 | None:intergenic | 35.0% |
| ATATTGCTGCATGATCAACT+GGG | + | chr2_1:53125854-53125873 | None:intergenic | 35.0% | |
| TATATTGCTGCATGATCAAC+TGG | + | chr2_1:53125855-53125874 | None:intergenic | 35.0% | |
| ATTGTGAGGTACAAGGTCAA+TGG | + | chr2_1:53122843-53122862 | None:intergenic | 40.0% | |
| AAGCTGTATTGTGAGGTACA+AGG | + | chr2_1:53122850-53122869 | None:intergenic | 40.0% | |
| GAAGTTGAAGCTGTATTGTG+AGG | + | chr2_1:53122857-53122876 | None:intergenic | 40.0% | |
| TAAACCCATGACCACAAACT+TGG | - | chr2_1:53123197-53123216 | Msa0211620:CDS | 40.0% | |
| GATACCAAGTTTGTGGTCAT+GGG | + | chr2_1:53123204-53123223 | None:intergenic | 40.0% | |
| AGATACCAAGTTTGTGGTCA+TGG | + | chr2_1:53123205-53123224 | None:intergenic | 40.0% | |
| GTCAAGAGATACCAAGTTTG+TGG | + | chr2_1:53123211-53123230 | None:intergenic | 40.0% | |
| ! | AGAGCGTTTACTCTCTTTCA+TGG | - | chr2_1:53123361-53123380 | Msa0211620:CDS | 40.0% |
| ! | GCACCGATATTTCTGATTGT+AGG | - | chr2_1:53123406-53123425 | Msa0211620:CDS | 40.0% |
| TTTCTGATTGTAGGTGTGTC+TGG | - | chr2_1:53123415-53123434 | Msa0211620:CDS | 40.0% | |
| TCACAATTATCACGCATGCA+AGG | + | chr2_1:53123855-53123874 | None:intergenic | 40.0% | |
| TATTCAAACCTTGTTACCCC+AGG | + | chr2_1:53124003-53124022 | None:intergenic | 40.0% | |
| CTTGGCCATGTAATTAACTG+TGG | - | chr2_1:53124459-53124478 | Msa0211620:intron | 40.0% | |
| !! | TGCAATAGCATTTTGAGGGT+TGG | - | chr2_1:53124772-53124791 | Msa0211620:intron | 40.0% |
| CAAACCACATGTTATCCTGA+TGG | - | chr2_1:53124943-53124962 | Msa0211620:intron | 40.0% | |
| TTACCCATCAGGATAACATG+TGG | + | chr2_1:53124950-53124969 | None:intergenic | 40.0% | |
| ! | ACATGTTATCCTGATGGGTA+AGG | - | chr2_1:53124949-53124968 | Msa0211620:intron | 40.0% |
| ! | TTTTCAACACCTTACCCATC+AGG | + | chr2_1:53124961-53124980 | None:intergenic | 40.0% |
| !! | TGATGGGTAAGGTGTTGAAA+AGG | - | chr2_1:53124960-53124979 | Msa0211620:intron | 40.0% |
| !! | GGAGGCCGTATTTTGAAAAT+AGG | - | chr2_1:53124981-53125000 | Msa0211620:intron | 40.0% |
| ! | TTTTACAGAACTGTAGGGAG+AGG | - | chr2_1:53125117-53125136 | Msa0211620:intron | 40.0% |
| AATCATCCGGACATCTTCAT+CGG | + | chr2_1:53125523-53125542 | None:intergenic | 40.0% | |
| ! | CATGCTTTTGCAAATACGAC+TGG | + | chr2_1:53125558-53125577 | None:intergenic | 40.0% |
| ! | TAGAGTTGACTTTGCGATCT+TGG | - | chr2_1:53125592-53125611 | Msa0211620:intron | 40.0% |
| AACATCCTTTAGGTCCTACA+GGG | - | chr2_1:53125814-53125833 | Msa0211620:intron | 40.0% | |
| ACTACTCTCTCTCTCTCTCA+GGG | - | chr2_1:53122805-53122824 | Msa0211620:CDS | 45.0% | |
| TAATGTGGGGAGAAGAAGTG+AGG | - | chr2_1:53123578-53123597 | Msa0211620:intron | 45.0% | |
| CTTCTATTCCTGGGGTAACA+AGG | - | chr2_1:53123992-53124011 | Msa0211620:intron | 45.0% | |
| TGTTAGCGCATACGTTACTG+TGG | - | chr2_1:53124184-53124203 | Msa0211620:intron | 45.0% | |
| ! | AGGCGTTCATGCGTACTTTT+TGG | - | chr2_1:53124325-53124344 | Msa0211620:intron | 45.0% |
| !! | GGCGTTCATGCGTACTTTTT+GGG | - | chr2_1:53124326-53124345 | Msa0211620:intron | 45.0% |
| AGGCCAAGTACCAACATAGT+CGG | + | chr2_1:53124821-53124840 | None:intergenic | 45.0% | |
| GGATTAGAGAACAGAGCAGT+CGG | + | chr2_1:53124898-53124917 | None:intergenic | 45.0% | |
| !! | TGGGTAAGGTGTTGAAAAGG+AGG | - | chr2_1:53124963-53124982 | Msa0211620:intron | 45.0% |
| TAGACCATTTGGCTAGTACC+TGG | + | chr2_1:53125234-53125253 | None:intergenic | 45.0% | |
| TTGCTGGTATGCGAATTGGT+GGG | + | chr2_1:53125355-53125374 | None:intergenic | 45.0% | |
| TGAAAGCCGATGAAGATGTC+CGG | - | chr2_1:53125514-53125533 | Msa0211620:intron | 45.0% | |
| GAGCTTCTGCTGAAATCATC+CGG | + | chr2_1:53125536-53125555 | None:intergenic | 45.0% | |
| TCCACACTGAAGAGAACAAG+AGG | - | chr2_1:53125616-53125635 | Msa0211620:intron | 45.0% | |
| TCCTCTTGTTCTCTTCAGTG+TGG | + | chr2_1:53125620-53125639 | None:intergenic | 45.0% | |
| GAATTGAAAGAAGAGGGGCT+TGG | - | chr2_1:53125723-53125742 | Msa0211620:intron | 45.0% | |
| !! | GCACCGATTATCGGAATAGT+AGG | + | chr2_1:53125759-53125778 | None:intergenic | 45.0% |
| GACCTAAAGGATGTTGTGGT+GGG | + | chr2_1:53125809-53125828 | None:intergenic | 45.0% | |
| GTAGGACCTAAAGGATGTTG+TGG | + | chr2_1:53125813-53125832 | None:intergenic | 45.0% | |
| CAACATCCTTTAGGTCCTAC+AGG | - | chr2_1:53125813-53125832 | Msa0211620:intron | 45.0% | |
| ATCATCCCTGTAGGACCTAA+AGG | + | chr2_1:53125822-53125841 | None:intergenic | 45.0% | |
| TTTCCCATGATCATCCCTGT+AGG | + | chr2_1:53125831-53125850 | None:intergenic | 45.0% | |
| CACTACTCTCTCTCTCTCTC+AGG | - | chr2_1:53122804-53122823 | Msa0211620:CDS | 50.0% | |
| ! | GGTACAAGGTCAATGGTGGA+TGG | + | chr2_1:53122836-53122855 | None:intergenic | 50.0% |
| GTGAGGTACAAGGTCAATGG+TGG | + | chr2_1:53122840-53122859 | None:intergenic | 50.0% | |
| TTTGTGCTCTGCCATAGAGC+AGG | - | chr2_1:53123741-53123760 | Msa0211620:intron | 50.0% | |
| TTGTGCTCTGCCATAGAGCA+GGG | - | chr2_1:53123742-53123761 | Msa0211620:intron | 50.0% | |
| CAGTGCAATTGTGGCCGATA+TGG | + | chr2_1:53124485-53124504 | None:intergenic | 50.0% | |
| TCGGCTATGCAGTGCAATTG+TGG | + | chr2_1:53124494-53124513 | None:intergenic | 50.0% | |
| ACAATTGCACTGCATAGCCG+AGG | - | chr2_1:53124493-53124512 | Msa0211620:intron | 50.0% | |
| TATTGCAGTGAAGCGAGTGG+CGG | + | chr2_1:53124759-53124778 | None:intergenic | 50.0% | |
| TGCTATTGCAGTGAAGCGAG+TGG | + | chr2_1:53124762-53124781 | None:intergenic | 50.0% | |
| !! | CAGCGGATTGAAGATCGTTG+CGG | + | chr2_1:53124798-53124817 | None:intergenic | 50.0% |
| AGTACCAACATAGTCGGCAG+CGG | + | chr2_1:53124815-53124834 | None:intergenic | 50.0% | |
| ! | CTGCCGACTATGTTGGTACT+TGG | - | chr2_1:53124815-53124834 | Msa0211620:intron | 50.0% |
| AGAGCAGTCGGATACACAGT+TGG | + | chr2_1:53124886-53124905 | None:intergenic | 50.0% | |
| CAGCAGCAACAATCTGCGAT+CGG | - | chr2_1:53125201-53125220 | Msa0211620:intron | 50.0% | |
| CTACCTGACTGTTCCCATGT+TGG | - | chr2_1:53125263-53125282 | Msa0211620:intron | 50.0% | |
| AAGCCAACATGGGAACAGTC+AGG | + | chr2_1:53125269-53125288 | None:intergenic | 50.0% | |
| !! | ACTGTTCCCATGTTGGCTTC+TGG | - | chr2_1:53125270-53125289 | Msa0211620:intron | 50.0% |
| GAATTAGAGAATGCGGCTGG+AGG | + | chr2_1:53125330-53125349 | None:intergenic | 50.0% | |
| GTGGGCGGAATTAGAGAATG+CGG | + | chr2_1:53125337-53125356 | None:intergenic | 50.0% | |
| CTTGCTGGTATGCGAATTGG+TGG | + | chr2_1:53125356-53125375 | None:intergenic | 50.0% | |
| ! | GTGCTTGCTGGTATGCGAAT+TGG | + | chr2_1:53125359-53125378 | None:intergenic | 50.0% |
| !! | GTTGGTGTTGCTGCTGTTGA+TGG | + | chr2_1:53125392-53125411 | None:intergenic | 50.0% |
| GAAAGAAGAGGGGCTTGGAA+TGG | - | chr2_1:53125728-53125747 | Msa0211620:intron | 50.0% | |
| !! | TCAGCTGGAGCACCGATTAT+CGG | + | chr2_1:53125768-53125787 | None:intergenic | 50.0% |
| GTCCCACCACAACATCCTTT+AGG | - | chr2_1:53125804-53125823 | Msa0211620:intron | 50.0% | |
| GGACCTAAAGGATGTTGTGG+TGG | + | chr2_1:53125810-53125829 | None:intergenic | 50.0% | |
| AGGTCCTACAGGGATGATCA+TGG | - | chr2_1:53125824-53125843 | Msa0211620:intron | 50.0% | |
| GGTCCTACAGGGATGATCAT+GGG | - | chr2_1:53125825-53125844 | Msa0211620:intron | 50.0% | |
| TGGATGTGTGCACTTGACCA+TGG | + | chr2_1:53125915-53125934 | None:intergenic | 50.0% | |
| AAGTGCACACATCCAGCAAC+AGG | - | chr2_1:53125920-53125939 | Msa0211620:five_prime_UTR | 50.0% | |
| TGGCTGCTACACCGATGCTT+AGG | + | chr2_1:53124734-53124753 | None:intergenic | 55.0% | |
| ! | CAATCCGCTGCCGACTATGT+TGG | - | chr2_1:53124808-53124827 | Msa0211620:intron | 55.0% |
| CGCACCAGGTACTAGCCAAA+TGG | - | chr2_1:53125227-53125246 | Msa0211620:intron | 55.0% | |
| GGTGTGCCAGAAGCCAACAT+GGG | + | chr2_1:53125279-53125298 | None:intergenic | 55.0% | |
| AGGTGTGCCAGAAGCCAACA+TGG | + | chr2_1:53125280-53125299 | None:intergenic | 55.0% | |
| GCGGAATTAGAGAATGCGGC+TGG | + | chr2_1:53125333-53125352 | None:intergenic | 55.0% | |
| CTGGTATGCGAATTGGTGGG+CGG | + | chr2_1:53125352-53125371 | None:intergenic | 55.0% | |
| GGTGGAAATGCTGTGCTTGC+TGG | + | chr2_1:53125371-53125390 | None:intergenic | 55.0% | |
| !! | GGTGTTGCTGCTGTTGATGG+TGG | + | chr2_1:53125389-53125408 | None:intergenic | 55.0% |
| TACGCGCAAGTGGGAGAGTA+TGG | + | chr2_1:53125482-53125501 | None:intergenic | 55.0% | |
| ATGAAAGCCACAGGAGGTCG+AGG | + | chr2_1:53125891-53125910 | None:intergenic | 55.0% | |
| CATGGCATGAAAGCCACAGG+AGG | + | chr2_1:53125897-53125916 | None:intergenic | 55.0% | |
| CTCCTGTGGCTTTCATGCCA+TGG | - | chr2_1:53125895-53125914 | Msa0211620:five_prime_UTR | 55.0% | |
| GACCATGGCATGAAAGCCAC+AGG | + | chr2_1:53125900-53125919 | None:intergenic | 55.0% | |
| TCTGTCTGTGGCTGTTGTGG+TGG | + | chr2_1:53125948-53125967 | None:intergenic | 55.0% | |
| GAGTCTGTCTGTGGCTGTTG+TGG | + | chr2_1:53125951-53125970 | None:intergenic | 55.0% | |
| TTGCACTGCATAGCCGAGGC+AGG | - | chr2_1:53124497-53124516 | Msa0211620:intron | 60.0% | |
| TGCACTGCATAGCCGAGGCA+GGG | - | chr2_1:53124498-53124517 | Msa0211620:intron | 60.0% | |
| ! | AACACCAGAGCACCCTGCCT+CGG | + | chr2_1:53124513-53124532 | None:intergenic | 60.0% |
| CAGTGAAGCGAGTGGCGGTA+TGG | + | chr2_1:53124754-53124773 | None:intergenic | 60.0% | |
| GGGGTAGGAACAGCTACAGC+AGG | + | chr2_1:53125300-53125319 | None:intergenic | 60.0% | |
| ATGCGGCTGGAGGCTGTGTT+GGG | + | chr2_1:53125320-53125339 | None:intergenic | 60.0% | |
| AATGCGGCTGGAGGCTGTGT+TGG | + | chr2_1:53125321-53125340 | None:intergenic | 60.0% | |
| GTTGTGGTGGCTCCTGTTGC+TGG | + | chr2_1:53125935-53125954 | None:intergenic | 60.0% | |
| ! | ATAGCCGAGGCAGGGTGCTC+TGG | - | chr2_1:53124506-53124525 | Msa0211620:intron | 65.0% |
| TCTGCGATCGGAGTCGCACC+AGG | - | chr2_1:53125213-53125232 | Msa0211620:intron | 65.0% | |
| GCTGGAGGCTGTGTTGGGGT+AGG | + | chr2_1:53125315-53125334 | None:intergenic | 65.0% | |
| TGCGGCTGGAGGCTGTGTTG+GGG | + | chr2_1:53125319-53125338 | None:intergenic | 65.0% | |
| CCACAGGAGGTCGAGGCTGC+TGG | + | chr2_1:53125884-53125903 | None:intergenic | 70.0% | |
| CCAGCAGCCTCGACCTCCTG+TGG | - | chr2_1:53125881-53125900 | Msa0211620:five_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 53122778 | 53125974 | 53122778 | ID=Msa0211620;Name=Msa0211620 |
| chr2_1 | mRNA | 53122778 | 53125974 | 53122778 | ID=Msa0211620-mRNA-1;Parent=Msa0211620;Name=Msa0211620-mRNA-1;_AED=0.15;_eAED=0.18;_QI=106|0|0.5|1|0|0|2|0|262 |
| chr2_1 | exon | 53122778 | 53123562 | 53122778 | ID=Msa0211620-mRNA-1:exon:14770;Parent=Msa0211620-mRNA-1 |
| chr2_1 | exon | 53125865 | 53125974 | 53125865 | ID=Msa0211620-mRNA-1:exon:14769;Parent=Msa0211620-mRNA-1 |
| chr2_1 | five_prime_UTR | 53125869 | 53125974 | 53125869 | ID=Msa0211620-mRNA-1:five_prime_utr;Parent=Msa0211620-mRNA-1 |
| chr2_1 | CDS | 53125865 | 53125868 | 53125865 | ID=Msa0211620-mRNA-1:cds;Parent=Msa0211620-mRNA-1 |
| chr2_1 | CDS | 53122778 | 53123562 | 53122778 | ID=Msa0211620-mRNA-1:cds;Parent=Msa0211620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
