Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0211810 | KEH42071.1 | 88.450 | 329 | 18 | 10 | 3 | 320 | 168 | 487 | 0.0 | 546 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0211810 | sp|Q9SA82|BH052_ARATH | 38.596 | 228 | 121 | 7 | 99 | 313 | 41 | 262 | 6.00e-29 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0211810 | A0A072VKB3 | 88.450 | 329 | 18 | 10 | 3 | 320 | 168 | 487 | 0.0 | 546 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0211810 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0211810 | MtrunA17_Chr2g0311101 | 87.307 | 323 | 25 | 4 | 1 | 320 | 1 | 310 | 0.0 | 527 |
| Msa0211810 | MtrunA17_Chr1g0179061 | 87.097 | 248 | 13 | 9 | 13 | 249 | 1 | 240 | 1.44e-142 | 402 |
| Msa0211810 | MtrunA17_Chr8g0384141 | 58.491 | 53 | 22 | 0 | 190 | 242 | 125 | 177 | 7.30e-13 | 67.8 |
| Msa0211810 | MtrunA17_Chr3g0134001 | 58.491 | 53 | 22 | 0 | 190 | 242 | 182 | 234 | 3.21e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0211810 | AT1G30670.1 | 38.596 | 228 | 121 | 7 | 99 | 313 | 41 | 262 | 6.10e-30 | 115 |
| Msa0211810 | AT2G34820.1 | 39.331 | 239 | 106 | 7 | 99 | 313 | 66 | 289 | 5.42e-26 | 105 |
| Msa0211810 | AT3G21330.1 | 60.377 | 53 | 21 | 0 | 190 | 242 | 280 | 332 | 5.40e-13 | 69.3 |
| Msa0211810 | AT5G01305.1 | 50.000 | 58 | 29 | 0 | 190 | 247 | 48 | 105 | 6.65e-12 | 63.5 |
Find 48 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATTATGATTGCTCAATT+TGG | 0.191234 | 2_1:+53399786 | None:intergenic |
| AGTTGGAATGCTTCAACTTA+TGG | 0.195386 | 2_1:-53400913 | Msa0211810:CDS |
| ATCTCTGCTGTGTTCATCTT+TGG | 0.238213 | 2_1:+53400978 | None:intergenic |
| AAAATGAAATCTTCCTCATT+TGG | 0.263570 | 2_1:+53401299 | None:intergenic |
| AATTTGGTGACAAACTCTTT+TGG | 0.289383 | 2_1:+53399802 | None:intergenic |
| CCTCATAGTATAACAGCTTT+TGG | 0.301868 | 2_1:+53401246 | None:intergenic |
| AAATGAAATCTTCCTCATTT+GGG | 0.325640 | 2_1:+53401300 | None:intergenic |
| GAAGCAAAAGGGTTAGGGTT+AGG | 0.345524 | 2_1:+53401152 | None:intergenic |
| AAGCAAAAGGGTTAGGGTTA+GGG | 0.345934 | 2_1:+53401153 | None:intergenic |
| TACAATTTCTCTTGAACAAA+TGG | 0.348402 | 2_1:+53399847 | None:intergenic |
| GAGAAGCTTCATTGAAATAG+TGG | 0.359894 | 2_1:+53401462 | None:intergenic |
| ATCAAAACCTACCATCCTTA+AGG | 0.361760 | 2_1:-53399758 | Msa0211810:CDS |
| AAATAACACTATTCTTGCTT+TGG | 0.365183 | 2_1:+53399697 | None:intergenic |
| TCAAAGGAAGCAAAAGGGTT+AGG | 0.369513 | 2_1:+53401146 | None:intergenic |
| GCAGTTTGAATAGGTTGATA+AGG | 0.385279 | 2_1:+53401548 | None:intergenic |
| GAGCTTGGGAAGTTGGTTCC+TGG | 0.392352 | 2_1:-53401005 | Msa0211810:CDS |
| GACACAAGAGCTTGGGAAGT+TGG | 0.397999 | 2_1:-53401012 | Msa0211810:CDS |
| TTGATTATTTCAGGAAGAAA+AGG | 0.406675 | 2_1:-53399911 | Msa0211810:intron |
| CAAGCTGTTTCAGACCCTTA+AGG | 0.427556 | 2_1:+53399743 | None:intergenic |
| TCAAAACCTACCATCCTTAA+GGG | 0.456430 | 2_1:-53399757 | Msa0211810:CDS |
| AAGGGTCTGAAACAGCTTGT+TGG | 0.460418 | 2_1:-53399739 | Msa0211810:CDS |
| CAAAGGAAGCAAAAGGGTTA+GGG | 0.461232 | 2_1:+53401147 | None:intergenic |
| TCTGCCTCAAAGGAAGCAAA+AGG | 0.471457 | 2_1:+53401140 | None:intergenic |
| AGTGGTGATTTCTGAGTTGT+TGG | 0.472171 | 2_1:+53401523 | None:intergenic |
| TTGTGTAAATCTTCACTTGG+AGG | 0.473071 | 2_1:+53399883 | None:intergenic |
| CAGTTTGAATAGGTTGATAA+GGG | 0.475268 | 2_1:+53401549 | None:intergenic |
| TTGTTGGTAGCAGTTTGAAT+AGG | 0.476845 | 2_1:+53401539 | None:intergenic |
| GTTCAATGTGAGAAGAAAGT+TGG | 0.488552 | 2_1:-53401098 | Msa0211810:CDS |
| CCAAAAGCTGTTATACTATG+AGG | 0.493920 | 2_1:-53401246 | Msa0211810:CDS |
| GTGTTCATCTTTGGTCCACC+AGG | 0.499817 | 2_1:+53400987 | None:intergenic |
| ACTGAGAAGACACAAGAGCT+TGG | 0.499993 | 2_1:-53401020 | Msa0211810:CDS |
| CTGAGAAGACACAAGAGCTT+GGG | 0.500383 | 2_1:-53401019 | Msa0211810:CDS |
| AGAGTATCGCGGCTCGAGAA+AGG | 0.514420 | 2_1:-53401055 | Msa0211810:CDS |
| TGTAAATCTTCACTTGGAGG+AGG | 0.533936 | 2_1:+53399886 | None:intergenic |
| CTTGGGAAGTTGGTTCCTGG+TGG | 0.551828 | 2_1:-53401002 | Msa0211810:CDS |
| AGTTTGTGTAAATCTTCACT+TGG | 0.555055 | 2_1:+53399880 | None:intergenic |
| TTGTTCATGATGTTGAAAAG+TGG | 0.560071 | 2_1:+53401505 | None:intergenic |
| TCGCGGCTCGAGAAAGGAGA+AGG | 0.564993 | 2_1:-53401049 | Msa0211810:CDS |
| GTGAGAAGAAAGTTGGTGAA+AGG | 0.566992 | 2_1:-53401091 | Msa0211810:CDS |
| AAGTTTCTTCAAGCTCAAGT+TGG | 0.567049 | 2_1:-53400930 | Msa0211810:CDS |
| ACTTATGGAAACATTTAGCA+AGG | 0.569731 | 2_1:-53400898 | Msa0211810:intron |
| TTCAGACCCTTAAGGATGGT+AGG | 0.578594 | 2_1:+53399751 | None:intergenic |
| GAGTTGAAAAGCTCTTGTTG+TGG | 0.596772 | 2_1:+53401209 | None:intergenic |
| CTGCCTCAAAGGAAGCAAAA+GGG | 0.606158 | 2_1:+53401141 | None:intergenic |
| CTGTTTCAGACCCTTAAGGA+TGG | 0.616344 | 2_1:+53399747 | None:intergenic |
| AGTAGTTGATCATCTTGACA+AGG | 0.655107 | 2_1:+53401380 | None:intergenic |
| TATCTCGTCGCAGAGTATCG+CGG | 0.698927 | 2_1:-53401066 | Msa0211810:CDS |
| GTAGTTGATCATCTTGACAA+GGG | 0.704443 | 2_1:+53401381 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGTTTTTTTGTTAACA+TGG | - | chr2_1:53399722-53399741 | Msa0211810:CDS | 15.0% |
| !!! | TTTTGTTTTTTTGTTAACAT+GGG | - | chr2_1:53399723-53399742 | Msa0211810:CDS | 15.0% |
| !!! | CAATTTTGTCTTTTTTATAT+TGG | - | chr2_1:53400932-53400951 | Msa0211810:CDS | 15.0% |
| !!! | ATTTTGTTTTTTTGTTAACA+TGG | - | chr2_1:53399722-53399741 | Msa0211810:CDS | 15.0% |
| !!! | TTTTGTTTTTTTGTTAACAT+GGG | - | chr2_1:53399723-53399742 | Msa0211810:CDS | 15.0% |
| !!! | CAATTTTGTCTTTTTTATAT+TGG | - | chr2_1:53400932-53400951 | Msa0211810:CDS | 15.0% |
| !! | TCATTTGAGTAAAAACAATT+AGG | + | chr2_1:53399921-53399940 | None:intergenic | 20.0% |
| !!! | TATTTTCATGGAGTAAAAAT+TGG | + | chr2_1:53400971-53400990 | None:intergenic | 20.0% |
| !!! | ACAATTGCTAAATATTTTCA+TGG | + | chr2_1:53400983-53401002 | None:intergenic | 20.0% |
| !! | GCAATTGTTATAAAAATTGA+TGG | - | chr2_1:53400995-53401014 | Msa0211810:CDS | 20.0% |
| !!! | TAAATAATGAGAGAGTATTT+AGG | - | chr2_1:53401110-53401129 | Msa0211810:CDS | 20.0% |
| !! | TTATTGTATAAAGTTACACT+AGG | + | chr2_1:53401353-53401372 | None:intergenic | 20.0% |
| !!! | TTTTGCTAATTGATTATTTC+AGG | - | chr2_1:53401408-53401427 | Msa0211810:CDS | 20.0% |
| !! | TCATTTGAGTAAAAACAATT+AGG | + | chr2_1:53399921-53399940 | None:intergenic | 20.0% |
| !!! | TATTTTCATGGAGTAAAAAT+TGG | + | chr2_1:53400971-53400990 | None:intergenic | 20.0% |
| !!! | ACAATTGCTAAATATTTTCA+TGG | + | chr2_1:53400983-53401002 | None:intergenic | 20.0% |
| !! | GCAATTGTTATAAAAATTGA+TGG | - | chr2_1:53400995-53401014 | Msa0211810:CDS | 20.0% |
| !!! | TAAATAATGAGAGAGTATTT+AGG | - | chr2_1:53401110-53401129 | Msa0211810:CDS | 20.0% |
| !! | TTATTGTATAAAGTTACACT+AGG | + | chr2_1:53401353-53401372 | None:intergenic | 20.0% |
| !!! | TTTTGCTAATTGATTATTTC+AGG | - | chr2_1:53401408-53401427 | Msa0211810:CDS | 20.0% |
| ! | AAATGAAATCTTCCTCATTT+GGG | + | chr2_1:53400031-53400050 | None:intergenic | 25.0% |
| ! | AAAATGAAATCTTCCTCATT+TGG | + | chr2_1:53400032-53400051 | None:intergenic | 25.0% |
| !! | TGAACAACATCAACAATTTT+TGG | + | chr2_1:53400215-53400234 | None:intergenic | 25.0% |
| ! | GAAAAACATGCAAATTCAAT+CGG | + | chr2_1:53400584-53400603 | None:intergenic | 25.0% |
| !!! | ATGCTACTTGATTTTGTTTT+TGG | - | chr2_1:53400639-53400658 | Msa0211810:intron | 25.0% |
| ! | ACTCAAATGATTACAAGAAA+GGG | + | chr2_1:53400666-53400685 | None:intergenic | 25.0% |
| ! | TACTCAAATGATTACAAGAA+AGG | + | chr2_1:53400667-53400686 | None:intergenic | 25.0% |
| ! | TGTTATTATGTCATGTATTG+TGG | - | chr2_1:53400838-53400857 | Msa0211810:intron | 25.0% |
| ! | TATTGTGGTAAATATCTAGA+TGG | - | chr2_1:53400853-53400872 | Msa0211810:intron | 25.0% |
| ! | TTGATTATTTCAGGAAGAAA+AGG | - | chr2_1:53401417-53401436 | Msa0211810:CDS | 25.0% |
| ! | TACAATTTCTCTTGAACAAA+TGG | + | chr2_1:53401484-53401503 | None:intergenic | 25.0% |
| ! | ATCATTATGATTGCTCAATT+TGG | + | chr2_1:53401545-53401564 | None:intergenic | 25.0% |
| ! | AAATGAAATCTTCCTCATTT+GGG | + | chr2_1:53400031-53400050 | None:intergenic | 25.0% |
| ! | AAAATGAAATCTTCCTCATT+TGG | + | chr2_1:53400032-53400051 | None:intergenic | 25.0% |
| !! | TGAACAACATCAACAATTTT+TGG | + | chr2_1:53400215-53400234 | None:intergenic | 25.0% |
| ! | GAAAAACATGCAAATTCAAT+CGG | + | chr2_1:53400584-53400603 | None:intergenic | 25.0% |
| !!! | ATGCTACTTGATTTTGTTTT+TGG | - | chr2_1:53400639-53400658 | Msa0211810:intron | 25.0% |
| ! | ACTCAAATGATTACAAGAAA+GGG | + | chr2_1:53400666-53400685 | None:intergenic | 25.0% |
| ! | TACTCAAATGATTACAAGAA+AGG | + | chr2_1:53400667-53400686 | None:intergenic | 25.0% |
| ! | TGTTATTATGTCATGTATTG+TGG | - | chr2_1:53400838-53400857 | Msa0211810:intron | 25.0% |
| ! | TATTGTGGTAAATATCTAGA+TGG | - | chr2_1:53400853-53400872 | Msa0211810:intron | 25.0% |
| ! | TTGATTATTTCAGGAAGAAA+AGG | - | chr2_1:53401417-53401436 | Msa0211810:CDS | 25.0% |
| ! | TACAATTTCTCTTGAACAAA+TGG | + | chr2_1:53401484-53401503 | None:intergenic | 25.0% |
| ! | ATCATTATGATTGCTCAATT+TGG | + | chr2_1:53401545-53401564 | None:intergenic | 25.0% |
| !! | CAGTTTGAATAGGTTGATAA+GGG | + | chr2_1:53399782-53399801 | None:intergenic | 30.0% |
| TTGTTCATGATGTTGAAAAG+TGG | + | chr2_1:53399826-53399845 | None:intergenic | 30.0% | |
| !!! | ATCGTTTTGAGAAGAAAAAG+TGG | + | chr2_1:53399982-53400001 | None:intergenic | 30.0% |
| !! | ACTTTTTCTTCTCAAAACGA+TGG | - | chr2_1:53399981-53400000 | Msa0211810:intron | 30.0% |
| ! | GAATGAAATTTTCCCAAATG+AGG | - | chr2_1:53400016-53400035 | Msa0211810:intron | 30.0% |
| AAACTCATCCACAAAAAAGT+TGG | + | chr2_1:53400147-53400166 | None:intergenic | 30.0% | |
| ACTTATGGAAACATTTAGCA+AGG | - | chr2_1:53400430-53400449 | Msa0211810:intron | 30.0% | |
| ! | TTCAACTGTTTTATGTCCTT+AGG | - | chr2_1:53400544-53400563 | Msa0211810:intron | 30.0% |
| AAAGACAAAATTGAGACAGT+AGG | + | chr2_1:53400925-53400944 | None:intergenic | 30.0% | |
| ! | AATTGATGGATGCAATTGTT+AGG | - | chr2_1:53401009-53401028 | Msa0211810:CDS | 30.0% |
| GAAAAAAAGGGTTAAGGAAA+CGG | - | chr2_1:53401067-53401086 | Msa0211810:CDS | 30.0% | |
| ! | TATTTAGTTTCCCAAACACT+TGG | - | chr2_1:53401235-53401254 | Msa0211810:CDS | 30.0% |
| TAATATCCTTCCAAGTGTTT+GGG | + | chr2_1:53401248-53401267 | None:intergenic | 30.0% | |
| TTAATATCCTTCCAAGTGTT+TGG | + | chr2_1:53401249-53401268 | None:intergenic | 30.0% | |
| AGTTTGTGTAAATCTTCACT+TGG | + | chr2_1:53401451-53401470 | None:intergenic | 30.0% | |
| !! | AATTTGGTGACAAACTCTTT+TGG | + | chr2_1:53401529-53401548 | None:intergenic | 30.0% |
| !! | CAGTTTGAATAGGTTGATAA+GGG | + | chr2_1:53399782-53399801 | None:intergenic | 30.0% |
| TTGTTCATGATGTTGAAAAG+TGG | + | chr2_1:53399826-53399845 | None:intergenic | 30.0% | |
| !!! | ATCGTTTTGAGAAGAAAAAG+TGG | + | chr2_1:53399982-53400001 | None:intergenic | 30.0% |
| !! | ACTTTTTCTTCTCAAAACGA+TGG | - | chr2_1:53399981-53400000 | Msa0211810:intron | 30.0% |
| ! | GAATGAAATTTTCCCAAATG+AGG | - | chr2_1:53400016-53400035 | Msa0211810:intron | 30.0% |
| AAACTCATCCACAAAAAAGT+TGG | + | chr2_1:53400147-53400166 | None:intergenic | 30.0% | |
| ACTTATGGAAACATTTAGCA+AGG | - | chr2_1:53400430-53400449 | Msa0211810:intron | 30.0% | |
| ! | TTCAACTGTTTTATGTCCTT+AGG | - | chr2_1:53400544-53400563 | Msa0211810:intron | 30.0% |
| AAAGACAAAATTGAGACAGT+AGG | + | chr2_1:53400925-53400944 | None:intergenic | 30.0% | |
| ! | AATTGATGGATGCAATTGTT+AGG | - | chr2_1:53401009-53401028 | Msa0211810:CDS | 30.0% |
| GAAAAAAAGGGTTAAGGAAA+CGG | - | chr2_1:53401067-53401086 | Msa0211810:CDS | 30.0% | |
| ! | TATTTAGTTTCCCAAACACT+TGG | - | chr2_1:53401235-53401254 | Msa0211810:CDS | 30.0% |
| TAATATCCTTCCAAGTGTTT+GGG | + | chr2_1:53401248-53401267 | None:intergenic | 30.0% | |
| TTAATATCCTTCCAAGTGTT+TGG | + | chr2_1:53401249-53401268 | None:intergenic | 30.0% | |
| AGTTTGTGTAAATCTTCACT+TGG | + | chr2_1:53401451-53401470 | None:intergenic | 30.0% | |
| !! | AATTTGGTGACAAACTCTTT+TGG | + | chr2_1:53401529-53401548 | None:intergenic | 30.0% |
| !! | GCAGTTTGAATAGGTTGATA+AGG | + | chr2_1:53399783-53399802 | None:intergenic | 35.0% |
| !! | TTGTTGGTAGCAGTTTGAAT+AGG | + | chr2_1:53399792-53399811 | None:intergenic | 35.0% |
| GAGAAGCTTCATTGAAATAG+TGG | + | chr2_1:53399869-53399888 | None:intergenic | 35.0% | |
| GTAGTTGATCATCTTGACAA+GGG | + | chr2_1:53399950-53399969 | None:intergenic | 35.0% | |
| AGTAGTTGATCATCTTGACA+AGG | + | chr2_1:53399951-53399970 | None:intergenic | 35.0% | |
| ! | TATAACAGCTTTTGGCGTTT+TGG | + | chr2_1:53400077-53400096 | None:intergenic | 35.0% |
| ! | CCTCATAGTATAACAGCTTT+TGG | + | chr2_1:53400085-53400104 | None:intergenic | 35.0% |
| CCAAAAGCTGTTATACTATG+AGG | - | chr2_1:53400082-53400101 | Msa0211810:intron | 35.0% | |
| !!! | CAACTCAACCAACTTTTTTG+TGG | - | chr2_1:53400136-53400155 | Msa0211810:intron | 35.0% |
| !!! | AATTTTTGGTTCTGCCTCAA+AGG | + | chr2_1:53400201-53400220 | None:intergenic | 35.0% |
| GTTCAATGTGAGAAGAAAGT+TGG | - | chr2_1:53400230-53400249 | Msa0211810:intron | 35.0% | |
| AAGTTTCTTCAAGCTCAAGT+TGG | - | chr2_1:53400398-53400417 | Msa0211810:intron | 35.0% | |
| AGTTGGAATGCTTCAACTTA+TGG | - | chr2_1:53400415-53400434 | Msa0211810:intron | 35.0% | |
| ! | GGAGTATTACATAAGACCTA+AGG | + | chr2_1:53400563-53400582 | None:intergenic | 35.0% |
| TGTGTGTGTGAGAGAAAAAA+AGG | - | chr2_1:53401054-53401073 | Msa0211810:CDS | 35.0% | |
| GTGTGTGTGAGAGAAAAAAA+GGG | - | chr2_1:53401055-53401074 | Msa0211810:CDS | 35.0% | |
| GTGAGAGAAAAAAAGGGTTA+AGG | - | chr2_1:53401061-53401080 | Msa0211810:CDS | 35.0% | |
| CAAGTGTATATCAAATGAGC+TGG | - | chr2_1:53401138-53401157 | Msa0211810:CDS | 35.0% | |
| TTGTGTAAATCTTCACTTGG+AGG | + | chr2_1:53401448-53401467 | None:intergenic | 35.0% | |
| ATCAAAACCTACCATCCTTA+AGG | - | chr2_1:53401570-53401589 | Msa0211810:CDS | 35.0% | |
| TCAAAACCTACCATCCTTAA+GGG | - | chr2_1:53401571-53401590 | Msa0211810:CDS | 35.0% | |
| !! | GCAGTTTGAATAGGTTGATA+AGG | + | chr2_1:53399783-53399802 | None:intergenic | 35.0% |
| !! | TTGTTGGTAGCAGTTTGAAT+AGG | + | chr2_1:53399792-53399811 | None:intergenic | 35.0% |
| GAGAAGCTTCATTGAAATAG+TGG | + | chr2_1:53399869-53399888 | None:intergenic | 35.0% | |
| GTAGTTGATCATCTTGACAA+GGG | + | chr2_1:53399950-53399969 | None:intergenic | 35.0% | |
| AGTAGTTGATCATCTTGACA+AGG | + | chr2_1:53399951-53399970 | None:intergenic | 35.0% | |
| ! | TATAACAGCTTTTGGCGTTT+TGG | + | chr2_1:53400077-53400096 | None:intergenic | 35.0% |
| ! | CCTCATAGTATAACAGCTTT+TGG | + | chr2_1:53400085-53400104 | None:intergenic | 35.0% |
| CCAAAAGCTGTTATACTATG+AGG | - | chr2_1:53400082-53400101 | Msa0211810:intron | 35.0% | |
| !!! | CAACTCAACCAACTTTTTTG+TGG | - | chr2_1:53400136-53400155 | Msa0211810:intron | 35.0% |
| !!! | AATTTTTGGTTCTGCCTCAA+AGG | + | chr2_1:53400201-53400220 | None:intergenic | 35.0% |
| GTTCAATGTGAGAAGAAAGT+TGG | - | chr2_1:53400230-53400249 | Msa0211810:intron | 35.0% | |
| AAGTTTCTTCAAGCTCAAGT+TGG | - | chr2_1:53400398-53400417 | Msa0211810:intron | 35.0% | |
| AGTTGGAATGCTTCAACTTA+TGG | - | chr2_1:53400415-53400434 | Msa0211810:intron | 35.0% | |
| ! | GGAGTATTACATAAGACCTA+AGG | + | chr2_1:53400563-53400582 | None:intergenic | 35.0% |
| TGTGTGTGTGAGAGAAAAAA+AGG | - | chr2_1:53401054-53401073 | Msa0211810:CDS | 35.0% | |
| GTGTGTGTGAGAGAAAAAAA+GGG | - | chr2_1:53401055-53401074 | Msa0211810:CDS | 35.0% | |
| GTGAGAGAAAAAAAGGGTTA+AGG | - | chr2_1:53401061-53401080 | Msa0211810:CDS | 35.0% | |
| CAAGTGTATATCAAATGAGC+TGG | - | chr2_1:53401138-53401157 | Msa0211810:CDS | 35.0% | |
| TTGTGTAAATCTTCACTTGG+AGG | + | chr2_1:53401448-53401467 | None:intergenic | 35.0% | |
| ATCAAAACCTACCATCCTTA+AGG | - | chr2_1:53401570-53401589 | Msa0211810:CDS | 35.0% | |
| TCAAAACCTACCATCCTTAA+GGG | - | chr2_1:53401571-53401590 | Msa0211810:CDS | 35.0% | |
| AGTGGTGATTTCTGAGTTGT+TGG | + | chr2_1:53399808-53399827 | None:intergenic | 40.0% | |
| GAGTTGAAAAGCTCTTGTTG+TGG | + | chr2_1:53400122-53400141 | None:intergenic | 40.0% | |
| AAGCAAAAGGGTTAGGGTTA+GGG | + | chr2_1:53400178-53400197 | None:intergenic | 40.0% | |
| CAAAGGAAGCAAAAGGGTTA+GGG | + | chr2_1:53400184-53400203 | None:intergenic | 40.0% | |
| TCAAAGGAAGCAAAAGGGTT+AGG | + | chr2_1:53400185-53400204 | None:intergenic | 40.0% | |
| ! | TAACCCTTTTGCTTCCTTTG+AGG | - | chr2_1:53400184-53400203 | Msa0211810:intron | 40.0% |
| !! | GTGAGAAGAAAGTTGGTGAA+AGG | - | chr2_1:53400237-53400256 | Msa0211810:intron | 40.0% |
| ATCTCTGCTGTGTTCATCTT+TGG | + | chr2_1:53400353-53400372 | None:intergenic | 40.0% | |
| ATTGAGACAGTAGGTAGTCA+TGG | + | chr2_1:53400916-53400935 | None:intergenic | 40.0% | |
| AGGAAACGGTTACTAAGAAG+AGG | - | chr2_1:53401081-53401100 | Msa0211810:CDS | 40.0% | |
| CGGTTACTAAGAAGAGGAAA+TGG | - | chr2_1:53401087-53401106 | Msa0211810:CDS | 40.0% | |
| GGCTATGTAACTGTTCAACA+AGG | - | chr2_1:53401159-53401178 | Msa0211810:CDS | 40.0% | |
| TAGTTTCCCAAACACTTGGA+AGG | - | chr2_1:53401239-53401258 | Msa0211810:CDS | 40.0% | |
| !! | TAGGTGCTGAATCATGTCAT+GGG | + | chr2_1:53401284-53401303 | None:intergenic | 40.0% |
| TGTAAATCTTCACTTGGAGG+AGG | + | chr2_1:53401445-53401464 | None:intergenic | 40.0% | |
| AGTGGTGATTTCTGAGTTGT+TGG | + | chr2_1:53399808-53399827 | None:intergenic | 40.0% | |
| GAGTTGAAAAGCTCTTGTTG+TGG | + | chr2_1:53400122-53400141 | None:intergenic | 40.0% | |
| AAGCAAAAGGGTTAGGGTTA+GGG | + | chr2_1:53400178-53400197 | None:intergenic | 40.0% | |
| CAAAGGAAGCAAAAGGGTTA+GGG | + | chr2_1:53400184-53400203 | None:intergenic | 40.0% | |
| TCAAAGGAAGCAAAAGGGTT+AGG | + | chr2_1:53400185-53400204 | None:intergenic | 40.0% | |
| ! | TAACCCTTTTGCTTCCTTTG+AGG | - | chr2_1:53400184-53400203 | Msa0211810:intron | 40.0% |
| !! | GTGAGAAGAAAGTTGGTGAA+AGG | - | chr2_1:53400237-53400256 | Msa0211810:intron | 40.0% |
| ATCTCTGCTGTGTTCATCTT+TGG | + | chr2_1:53400353-53400372 | None:intergenic | 40.0% | |
| ATTGAGACAGTAGGTAGTCA+TGG | + | chr2_1:53400916-53400935 | None:intergenic | 40.0% | |
| AGGAAACGGTTACTAAGAAG+AGG | - | chr2_1:53401081-53401100 | Msa0211810:CDS | 40.0% | |
| CGGTTACTAAGAAGAGGAAA+TGG | - | chr2_1:53401087-53401106 | Msa0211810:CDS | 40.0% | |
| GGCTATGTAACTGTTCAACA+AGG | - | chr2_1:53401159-53401178 | Msa0211810:CDS | 40.0% | |
| TAGTTTCCCAAACACTTGGA+AGG | - | chr2_1:53401239-53401258 | Msa0211810:CDS | 40.0% | |
| !! | TAGGTGCTGAATCATGTCAT+GGG | + | chr2_1:53401284-53401303 | None:intergenic | 40.0% |
| TGTAAATCTTCACTTGGAGG+AGG | + | chr2_1:53401445-53401464 | None:intergenic | 40.0% | |
| GAAGCAAAAGGGTTAGGGTT+AGG | + | chr2_1:53400179-53400198 | None:intergenic | 45.0% | |
| CTGCCTCAAAGGAAGCAAAA+GGG | + | chr2_1:53400190-53400209 | None:intergenic | 45.0% | |
| TCTGCCTCAAAGGAAGCAAA+AGG | + | chr2_1:53400191-53400210 | None:intergenic | 45.0% | |
| ACTGAGAAGACACAAGAGCT+TGG | - | chr2_1:53400308-53400327 | Msa0211810:intron | 45.0% | |
| CTGAGAAGACACAAGAGCTT+GGG | - | chr2_1:53400309-53400328 | Msa0211810:intron | 45.0% | |
| !! | CTAGGTGCTGAATCATGTCA+TGG | + | chr2_1:53401285-53401304 | None:intergenic | 45.0% |
| TTCAGACCCTTAAGGATGGT+AGG | + | chr2_1:53401580-53401599 | None:intergenic | 45.0% | |
| CTGTTTCAGACCCTTAAGGA+TGG | + | chr2_1:53401584-53401603 | None:intergenic | 45.0% | |
| ! | CAAGCTGTTTCAGACCCTTA+AGG | + | chr2_1:53401588-53401607 | None:intergenic | 45.0% |
| ! | AAGGGTCTGAAACAGCTTGT+TGG | - | chr2_1:53401589-53401608 | Msa0211810:CDS | 45.0% |
| GAAGCAAAAGGGTTAGGGTT+AGG | + | chr2_1:53400179-53400198 | None:intergenic | 45.0% | |
| CTGCCTCAAAGGAAGCAAAA+GGG | + | chr2_1:53400190-53400209 | None:intergenic | 45.0% | |
| TCTGCCTCAAAGGAAGCAAA+AGG | + | chr2_1:53400191-53400210 | None:intergenic | 45.0% | |
| ACTGAGAAGACACAAGAGCT+TGG | - | chr2_1:53400308-53400327 | Msa0211810:intron | 45.0% | |
| CTGAGAAGACACAAGAGCTT+GGG | - | chr2_1:53400309-53400328 | Msa0211810:intron | 45.0% | |
| !! | CTAGGTGCTGAATCATGTCA+TGG | + | chr2_1:53401285-53401304 | None:intergenic | 45.0% |
| TTCAGACCCTTAAGGATGGT+AGG | + | chr2_1:53401580-53401599 | None:intergenic | 45.0% | |
| CTGTTTCAGACCCTTAAGGA+TGG | + | chr2_1:53401584-53401603 | None:intergenic | 45.0% | |
| ! | CAAGCTGTTTCAGACCCTTA+AGG | + | chr2_1:53401588-53401607 | None:intergenic | 45.0% |
| ! | AAGGGTCTGAAACAGCTTGT+TGG | - | chr2_1:53401589-53401608 | Msa0211810:CDS | 45.0% |
| !!! | ATATTTTTTTTTAAAAAAAG+TGG | + | chr2_1:53401191-53401210 | None:intergenic | 5.0% |
| !!! | TATTAATTTTATTATTTTCT+AGG | + | chr2_1:53401303-53401322 | None:intergenic | 5.0% |
| !!! | ATATTTTTTTTTAAAAAAAG+TGG | + | chr2_1:53401191-53401210 | None:intergenic | 5.0% |
| !!! | TATTAATTTTATTATTTTCT+AGG | + | chr2_1:53401303-53401322 | None:intergenic | 5.0% |
| !! | GGCGTTTTGGACAATGAAGC+TGG | + | chr2_1:53400064-53400083 | None:intergenic | 50.0% |
| !! | TATCTCGTCGCAGAGTATCG+CGG | - | chr2_1:53400262-53400281 | Msa0211810:intron | 50.0% |
| GACACAAGAGCTTGGGAAGT+TGG | - | chr2_1:53400316-53400335 | Msa0211810:intron | 50.0% | |
| GTGTTCATCTTTGGTCCACC+AGG | + | chr2_1:53400344-53400363 | None:intergenic | 50.0% | |
| !! | GGCGTTTTGGACAATGAAGC+TGG | + | chr2_1:53400064-53400083 | None:intergenic | 50.0% |
| !! | TATCTCGTCGCAGAGTATCG+CGG | - | chr2_1:53400262-53400281 | Msa0211810:intron | 50.0% |
| GACACAAGAGCTTGGGAAGT+TGG | - | chr2_1:53400316-53400335 | Msa0211810:intron | 50.0% | |
| GTGTTCATCTTTGGTCCACC+AGG | + | chr2_1:53400344-53400363 | None:intergenic | 50.0% | |
| !! | AGAGTATCGCGGCTCGAGAA+AGG | - | chr2_1:53400273-53400292 | Msa0211810:intron | 55.0% |
| ! | GAGCTTGGGAAGTTGGTTCC+TGG | - | chr2_1:53400323-53400342 | Msa0211810:intron | 55.0% |
| ! | CTTGGGAAGTTGGTTCCTGG+TGG | - | chr2_1:53400326-53400345 | Msa0211810:intron | 55.0% |
| !! | AGAGTATCGCGGCTCGAGAA+AGG | - | chr2_1:53400273-53400292 | Msa0211810:intron | 55.0% |
| ! | GAGCTTGGGAAGTTGGTTCC+TGG | - | chr2_1:53400323-53400342 | Msa0211810:intron | 55.0% |
| ! | CTTGGGAAGTTGGTTCCTGG+TGG | - | chr2_1:53400326-53400345 | Msa0211810:intron | 55.0% |
| TCGCGGCTCGAGAAAGGAGA+AGG | - | chr2_1:53400279-53400298 | Msa0211810:intron | 60.0% | |
| TCGCGGCTCGAGAAAGGAGA+AGG | - | chr2_1:53400279-53400298 | Msa0211810:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 53399705 | 53401645 | 53399705 | ID=Msa0211810;Name=Msa0211810 |
| chr2_1 | mRNA | 53399705 | 53401645 | 53399705 | ID=Msa0211810-mRNA-1;Parent=Msa0211810;Name=Msa0211810-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|320 |
| chr2_1 | exon | 53400899 | 53401645 | 53400899 | ID=Msa0211810-mRNA-1:exon:14858;Parent=Msa0211810-mRNA-1 |
| chr2_1 | exon | 53399705 | 53399920 | 53399705 | ID=Msa0211810-mRNA-1:exon:14857;Parent=Msa0211810-mRNA-1 |
| chr2_1 | CDS | 53400899 | 53401645 | 53400899 | ID=Msa0211810-mRNA-1:cds;Parent=Msa0211810-mRNA-1 |
| chr2_1 | CDS | 53399705 | 53399920 | 53399705 | ID=Msa0211810-mRNA-1:cds;Parent=Msa0211810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
