AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0214220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0214220 MtrunA17_Chr2g0315211 99.381 323 2 0 1 323 1 323 0.0 659
Msa0214220 MtrunA17_Chr2g0315201 74.303 323 76 1 1 323 1 316 9.57e-150 423
Msa0214220 MtrunA17_Chr1g0154651 38.629 321 108 11 6 323 14 248 1.90e-42 147
Msa0214220 MtrunA17_Chr3g0141401 41.742 333 148 14 3 321 12 312 3.48e-36 132
Msa0214220 MtrunA17_Chr5g0403631 43.860 342 138 10 6 321 9 322 9.22e-33 123
Msa0214220 MtrunA17_Chr5g0408851 40.870 115 65 2 17 131 61 172 2.59e-16 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0214220 AT1G78700.1 69.760 334 81 8 1 323 1 325 5.52e-132 379
Msa0214220 AT4G18890.1 61.585 328 77 9 1 323 1 284 2.89e-103 304
Msa0214220 AT4G18890.2 52.988 251 69 9 78 323 2 208 1.50e-63 200
Msa0214220 AT1G75080.2 40.385 364 120 14 6 323 23 335 1.22e-46 160
Msa0214220 AT1G75080.1 40.385 364 120 14 6 323 23 335 1.22e-46 160
Msa0214220 AT1G19350.3 41.160 362 116 15 6 321 44 354 7.79e-45 157
Msa0214220 AT1G19350.5 40.884 362 117 15 6 321 22 332 8.72e-45 156
Msa0214220 AT1G19350.1 40.884 362 117 15 6 321 22 332 8.72e-45 156
Msa0214220 AT1G19350.6 40.884 362 117 15 6 321 22 332 8.72e-45 156
Msa0214220 AT1G19350.4 40.884 362 117 15 6 321 22 332 8.72e-45 156
Msa0214220 AT3G50750.1 42.331 326 105 10 6 318 14 269 2.43e-41 145
Msa0214220 AT4G36780.1 50.685 219 76 7 6 211 16 215 3.41e-33 124
Msa0214220 AT5G45300.2 48.235 85 41 1 17 101 97 178 4.59e-16 79.3
Msa0214220 AT5G45300.3 47.059 85 44 1 17 101 111 194 1.20e-15 78.2
Msa0214220 AT5G45300.1 47.059 85 44 1 17 101 97 180 1.22e-15 78.2
Msa0214220 AT2G45880.1 53.623 69 29 1 11 76 74 142 6.04e-15 75.9

Find 171 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATTCGGATTGAATTAT+AGG 0.190929 2_1:-58654382 Msa0214220:three_prime_UTR
CTTGACCCAGATTGGTTTGC+TGG 0.249683 2_1:-58655242 Msa0214220:CDS
CTACTAATCCATTTGGCTTC+AGG 0.251618 2_1:-58655169 Msa0214220:CDS
ACGTTTGAAGGAGTTGAATT+TGG 0.272772 2_1:+58658404 None:intergenic
AATAAAAGAATAAAATAAAA+TGG 0.287996 2_1:+58654625 None:intergenic
TTCATATTCAAAGTAAAATT+AGG 0.296697 2_1:-58654447 Msa0214220:three_prime_UTR
CCTCCCAGTCAGCTTTCCTC+TGG 0.324519 2_1:+58655348 None:intergenic
GAGAGGATCCATGAAGATTC+TGG 0.328306 2_1:-58654969 Msa0214220:CDS
CACTACTTACCTGGTCTTTG+AGG 0.341054 2_1:+58654917 None:intergenic
CTGATCCCAGCAAACCAATC+TGG 0.350204 2_1:+58655236 None:intergenic
AGAAAATTGGAAAAGATATA+TGG 0.355572 2_1:+58654355 None:intergenic
AGGGAATTTCCATCACCATT+AGG 0.370323 2_1:+58655506 None:intergenic
CATCTGATCCAGAATCTTCA+TGG 0.372743 2_1:+58654961 None:intergenic
GCATGGGATGAGCGCGGGCT+AGG 0.380817 2_1:+58655536 None:intergenic
GTTAAACCCTCAGATACTAT+TGG 0.381335 2_1:-58654505 Msa0214220:three_prime_UTR
TTCTCCGGTTTGAGAATGTA+TGG 0.382953 2_1:-58658149 Msa0214220:CDS
CAGATTGGTTTGCTGGGATC+AGG 0.383352 2_1:-58655235 Msa0214220:CDS
TACTAATCCATTTGGCTTCA+GGG 0.383377 2_1:-58655168 Msa0214220:CDS
CTCCCAGTCAGCTTTCCTCT+GGG 0.391858 2_1:+58655349 None:intergenic
AATTTGCATTGAACTTCCTT+TGG 0.398308 2_1:+58654398 None:intergenic
GGGTCAAGAACTTGGCGGCC+AGG 0.402595 2_1:+58655257 None:intergenic
AAGGAAGAAGAGCCAGGACT+TGG 0.403188 2_1:+58655560 None:intergenic
ATATTATGTAGAAAAGTTAG+AGG 0.408051 2_1:-58654684 Msa0214220:three_prime_UTR
TTATGTATACAACTTTAGTT+AGG 0.409089 2_1:-58654568 Msa0214220:three_prime_UTR
GAGGATCAGTCTACTCGTCC+TGG 0.410691 2_1:-58655329 Msa0214220:CDS
CTAGTCGCTACTAATCCATT+TGG 0.412992 2_1:-58655176 Msa0214220:CDS
AGAGCCAGGACTTGGGTTGT+AGG 0.415820 2_1:+58655568 None:intergenic
ATTTCAGATGAATTTGCCTT+TGG 0.420372 2_1:-58655029 Msa0214220:CDS
TCTACTCGTCCTGGGTGGGG+TGG 0.421075 2_1:-58655320 Msa0214220:CDS
AAGGAAGTTCAATGCAAATT+CGG 0.422861 2_1:-58654395 Msa0214220:three_prime_UTR
TACAAAACGACTACGTTTGA+AGG 0.423304 2_1:+58658392 None:intergenic
CTACTCGTCCTGGGTGGGGT+GGG 0.424088 2_1:-58655319 Msa0214220:CDS
TGGAAGCAGTGCAGTTGGTT+TGG 0.426703 2_1:-58655009 Msa0214220:CDS
AAAGTTAGAGGATGGAGTTA+AGG 0.427651 2_1:-58654672 Msa0214220:three_prime_UTR
GAGCTAAGTGGAGGAGTGAC+AGG 0.433832 2_1:+58655389 None:intergenic
TCAATATACCTGTAATGGAT+TGG 0.434527 2_1:-58654477 Msa0214220:three_prime_UTR
AAAGATCAATATACCTGTAA+TGG 0.435716 2_1:-58654482 Msa0214220:three_prime_UTR
AGAATAACAAGAGGAGAGAG+AGG 0.437244 2_1:-58658199 Msa0214220:CDS
ATACCAACCCAATCCATTAC+AGG 0.437562 2_1:+58654469 None:intergenic
AGAACTTGGCGGCCAGGGCT+AGG 0.439776 2_1:+58655263 None:intergenic
AATATATAGCTGCGGAAGCT+TGG 0.439819 2_1:+58655433 None:intergenic
GCCAAGTTCTTGACCCAGAT+TGG 0.448142 2_1:-58655250 Msa0214220:CDS
ATTTGGAAGAAATTGAGAAC+GGG 0.448456 2_1:+58658421 None:intergenic
TTGACCCAGATTGGTTTGCT+GGG 0.448546 2_1:-58655241 Msa0214220:CDS
ACCAATCTGGGTCAAGAACT+TGG 0.450542 2_1:+58655249 None:intergenic
CAATATACCTGTAATGGATT+GGG 0.451636 2_1:-58654476 Msa0214220:three_prime_UTR
ACCTCTTCCCTGAAGCCAAA+TGG 0.452419 2_1:+58655161 None:intergenic
AGACTCAAATTTCATATTGA+GGG 0.452575 2_1:+58654710 None:intergenic
TCCCATGCTGTAAATCCTAA+TGG 0.453038 2_1:-58655521 Msa0214220:CDS
TCCTCCACTCCTCCTAGCCC+TGG 0.453682 2_1:-58655275 Msa0214220:CDS
TAGGAGGAGTGGAGGAAGGC+TGG 0.458194 2_1:+58655282 None:intergenic
TGAACTTCCTTTGGTCATGC+AGG 0.467251 2_1:+58654407 None:intergenic
TCATTGTTATCGCAATGTTT+CGG 0.469180 2_1:+58658113 None:intergenic
GAACATGTCCCACTTTGTCC+AGG 0.469503 2_1:+58655107 None:intergenic
CAGACTCAAATTTCATATTG+AGG 0.479861 2_1:+58654709 None:intergenic
GGTCAAGAACTTGGCGGCCA+GGG 0.481435 2_1:+58655258 None:intergenic
TCCATTTGGCTTCAGGGAAG+AGG 0.483652 2_1:-58655162 Msa0214220:CDS
CTCTGGGGTGATCGAGCAGT+TGG 0.483752 2_1:+58655365 None:intergenic
TATGTAGAAAAGTTAGAGGA+TGG 0.484664 2_1:-58654680 Msa0214220:three_prime_UTR
AGTTGGTTTGGTGAAGCCTT+GGG 0.485013 2_1:-58654997 Msa0214220:CDS
GGATCAGGATGCCCCACAGC+GGG 0.486389 2_1:-58655220 Msa0214220:CDS
GCCTTTGGAAGCAGTGCAGT+TGG 0.487429 2_1:-58655014 Msa0214220:CDS
CACCCCAGAGGAAAGCTGAC+TGG 0.487819 2_1:-58655352 Msa0214220:CDS
TCAGAGCCCGCAGCTAAAGC+TGG 0.488328 2_1:+58655083 None:intergenic
GCGGAACGCATGGATGTGAT+AGG 0.488603 2_1:-58655644 Msa0214220:CDS
AGGAGAAGTTTGCCCGCTGT+GGG 0.488942 2_1:+58655208 None:intergenic
GCGGCCAGGGCTAGGAGGAG+TGG 0.492595 2_1:+58655271 None:intergenic
CATGGGATGAGCGCGGGCTA+GGG 0.493897 2_1:+58655537 None:intergenic
ACTTCGCCGGAGTTAGTTAA+CGG 0.497778 2_1:+58658484 None:intergenic
GATTCCCGCATGTGGACCCC+TGG 0.499359 2_1:-58655125 Msa0214220:CDS
ATGCAAGCCTGCGGAACGCA+TGG 0.500040 2_1:-58655654 Msa0214220:CDS
CATGATTGACCAAAATGAAA+GGG 0.501546 2_1:+58654527 None:intergenic
AAAGCTCTTTGTAATGAAGC+TGG 0.501704 2_1:-58658083 Msa0214220:CDS
CTCTTTGTAATGAAGCTGGT+TGG 0.502741 2_1:-58658079 Msa0214220:CDS
AGCTCTTTGAAGATATGAAT+CGG 0.504729 2_1:+58658351 None:intergenic
ACTTGGGTTGTAGGAAGCAC+AGG 0.505215 2_1:+58655577 None:intergenic
GCTTCCTACAACCCAAGTCC+TGG 0.505291 2_1:-58655572 Msa0214220:CDS
TGTTCTCCAGCTTTAGCTGC+GGG 0.505800 2_1:-58655089 Msa0214220:CDS
GATGATTTAGAGCTCACTCT+TGG 0.505956 2_1:-58654942 Msa0214220:CDS
TGGATCCTCTCTCCTTCCCA+AGG 0.506658 2_1:+58654981 None:intergenic
CAGTTGGTTTGGTGAAGCCT+TGG 0.507522 2_1:-58654998 Msa0214220:CDS
TCAGTCTACTCGTCCTGGGT+GGG 0.507843 2_1:-58655324 Msa0214220:CDS
TTACGATACGTTGTACCATC+AGG 0.508951 2_1:+58658047 None:intergenic
GGATGAGCGCGGGCTAGGGA+AGG 0.515742 2_1:+58655541 None:intergenic
GTTCCCATACATTCTCAAAC+CGG 0.515743 2_1:+58658145 None:intergenic
ACCCCAGAGGAAAGCTGACT+GGG 0.516090 2_1:-58655351 Msa0214220:CDS
GATCTTTCCAATAGTATCTG+AGG 0.516108 2_1:+58654498 None:intergenic
ACATGATTGACCAAAATGAA+AGG 0.517512 2_1:+58654526 None:intergenic
CAGTCTACTCGTCCTGGGTG+GGG 0.517746 2_1:-58655323 Msa0214220:CDS
CTAGGGAAGGAAGAAGAGCC+AGG 0.519399 2_1:+58655554 None:intergenic
ATCACATCCATGCGTTCCGC+AGG 0.519528 2_1:+58655647 None:intergenic
GGGCTAGGAGGAGTGGAGGA+AGG 0.523810 2_1:+58655278 None:intergenic
TGATCCCAGCAAACCAATCT+GGG 0.525877 2_1:+58655237 None:intergenic
CACCATTAGGATTTACAGCA+TGG 0.525920 2_1:+58655519 None:intergenic
GTGATAGGTGGTTCTGCAAT+GGG 0.525969 2_1:-58655629 Msa0214220:CDS
TCTGAAATAGCTTCAGACAT+TGG 0.527497 2_1:+58655044 None:intergenic
GCTAGATGACGTCGGGGACG+AGG 0.535162 2_1:-58658244 Msa0214220:exon
TATACAACTTTAGTTAGGTG+TGG 0.535701 2_1:-58654563 Msa0214220:three_prime_UTR
CGTCCCCGACGTCATCTAGC+CGG 0.536345 2_1:+58658247 None:intergenic
TTGTCCAGGGGTCCACATGC+GGG 0.536824 2_1:+58655121 None:intergenic
AGGAGTGACAGGAGCACTGA+TGG 0.537549 2_1:+58655400 None:intergenic
ATCTTTCCAATAGTATCTGA+GGG 0.539699 2_1:+58654499 None:intergenic
ATACAACTTTAGTTAGGTGT+GGG 0.543542 2_1:-58654562 Msa0214220:three_prime_UTR
TAGGAGAAGTTTGCCCGCTG+TGG 0.548726 2_1:+58655207 None:intergenic
AGGATCAGTCTACTCGTCCT+GGG 0.551485 2_1:-58655328 Msa0214220:CDS
AATTTGGAAGAAATTGAGAA+CGG 0.555130 2_1:+58658420 None:intergenic
ATGGAAATTCCCTCATTCCA+TGG 0.555829 2_1:-58655496 Msa0214220:CDS
TTCTCTCTCTCCTTCCACGT+TGG 0.560859 2_1:+58658218 None:intergenic
GCTGTAAATCCTAATGGTGA+TGG 0.562331 2_1:-58655515 Msa0214220:CDS
TAGCTGCGGAAGCTTGGAAG+AGG 0.564442 2_1:+58655439 None:intergenic
GCCAGGGCTAGGAGGAGTGG+AGG 0.565432 2_1:+58655274 None:intergenic
AGTTAACGGTGAATGTTGAC+CGG 0.566671 2_1:+58658498 None:intergenic
ATAGCAGCGAAGATCTTCTC+CGG 0.568682 2_1:-58658164 Msa0214220:CDS
GACGAGGCAACCAACGTGGA+AGG 0.571428 2_1:-58658228 Msa0214220:CDS
ATCAGTCTACTCGTCCTGGG+TGG 0.572626 2_1:-58655325 Msa0214220:CDS
TTTGTCCAGGGGTCCACATG+CGG 0.572765 2_1:+58655120 None:intergenic
AACATGTCCCACTTTGTCCA+GGG 0.573471 2_1:+58655108 None:intergenic
CGAGCAGTTGGAGAGCTAAG+TGG 0.574747 2_1:+58655377 None:intergenic
ACCATTAGGATTTACAGCAT+GGG 0.576979 2_1:+58655520 None:intergenic
ACGTGAGGTGGTTACTTCGC+CGG 0.577792 2_1:+58658471 None:intergenic
ATGTTCTCCAGCTTTAGCTG+CGG 0.579604 2_1:-58655090 Msa0214220:CDS
TCTCCGGTTTGAGAATGTAT+GGG 0.580133 2_1:-58658148 Msa0214220:CDS
AGGAAGAAGAGCCAGGACTT+GGG 0.580376 2_1:+58655561 None:intergenic
CAAATGGATTAGTAGCGACT+AGG 0.580823 2_1:+58655177 None:intergenic
ACCAACTGCACTGCTTCCAA+AGG 0.582208 2_1:+58655013 None:intergenic
TCCCAGTCAGCTTTCCTCTG+GGG 0.589485 2_1:+58655350 None:intergenic
TTACAGCATGGGATGAGCGC+GGG 0.592384 2_1:+58655531 None:intergenic
TGTGATAGGTGGTTCTGCAA+TGG 0.592423 2_1:-58655630 Msa0214220:CDS
GGTTGGATCGTTGAGCCTGA+TGG 0.594077 2_1:-58658062 Msa0214220:CDS
ATGTGGACCCCTGGACAAAG+TGG 0.596230 2_1:-58655116 Msa0214220:CDS
GGTTTGGTGAAGCCTTGGGA+AGG 0.598437 2_1:-58654993 Msa0214220:CDS
ACTTGGCGGCCAGGGCTAGG+AGG 0.598658 2_1:+58655266 None:intergenic
TGATGGTACAACGTATCGTA+AGG 0.599548 2_1:-58658045 Msa0214220:intron
GGAGAAGTTTGCCCGCTGTG+GGG 0.600569 2_1:+58655209 None:intergenic
CATTCACCGTTAACTAACTC+CGG 0.600897 2_1:-58658490 Msa0214220:five_prime_UTR
AGGAGAGAGAGAATAACAAG+AGG 0.603214 2_1:-58658208 Msa0214220:CDS
TGAAGCCTTGGGAAGGAGAG+AGG 0.605206 2_1:-58654986 Msa0214220:CDS
AAATGTACCTGCATGACCAA+AGG 0.606651 2_1:-58654414 Msa0214220:three_prime_UTR
CTCTTGGTACCTCAAAGACC+AGG 0.612700 2_1:-58654926 Msa0214220:intron
GTGGCAGTGATTCCCGCATG+TGG 0.613531 2_1:-58655133 Msa0214220:CDS
GACTCAAATTTCATATTGAG+GGG 0.622482 2_1:+58654711 None:intergenic
GTAGCGACTAGGCTGAAGGT+AGG 0.624575 2_1:+58655188 None:intergenic
TACTGCTGCCCACCCCACCC+AGG 0.630033 2_1:+58655311 None:intergenic
ATTAGTAGCGACTAGGCTGA+AGG 0.637373 2_1:+58655184 None:intergenic
AATTGGAAAAGATATATGGT+AGG 0.642271 2_1:+58654359 None:intergenic
TGTGGACCCCTGGACAAAGT+GGG 0.642302 2_1:-58655115 Msa0214220:CDS
CTGACATGGTAAGATGAACA+CGG 0.642363 2_1:+58655602 None:intergenic
TACAACTTTAGTTAGGTGTG+GGG 0.643760 2_1:-58654561 Msa0214220:three_prime_UTR
CCGCAGCTATATATTCACAC+TGG 0.647026 2_1:-58655425 Msa0214220:CDS
ATACCTGTAATGGATTGGGT+TGG 0.647510 2_1:-58654472 Msa0214220:three_prime_UTR
ATGTTGACCGGAAAACTCGT+CGG 0.650604 2_1:+58658510 None:intergenic
TTTCAAGGGATGCAAGCCTG+CGG 0.653639 2_1:-58655663 Msa0214220:intron
GCAGTTGGAGAGCTAAGTGG+AGG 0.657333 2_1:+58655380 None:intergenic
TTTACAGCATGGGATGAGCG+CGG 0.658189 2_1:+58655530 None:intergenic
CTGCATAAATGAATAGTCAG+TGG 0.662411 2_1:-58654735 Msa0214220:three_prime_UTR
AGGAAGCACAGGGACTGACA+TGG 0.663416 2_1:+58655588 None:intergenic
CGGGGACGAGGCAACCAACG+TGG 0.666818 2_1:-58658232 Msa0214220:CDS
CTTGGGTTGTAGGAAGCACA+GGG 0.669094 2_1:+58655578 None:intergenic
CCAGAGGAAAGCTGACTGGG+AGG 0.670133 2_1:-58655348 Msa0214220:CDS
ACATGTCCCACTTTGTCCAG+GGG 0.671696 2_1:+58655109 None:intergenic
TGACATGGTAAGATGAACAC+GGG 0.677171 2_1:+58655603 None:intergenic
AATCTGGGTCAAGAACTTGG+CGG 0.679247 2_1:+58655252 None:intergenic
TGATTGGATCTAAGAACGTG+AGG 0.680052 2_1:+58658456 None:intergenic
TTGGATCTAAGAACGTGAGG+TGG 0.690870 2_1:+58658459 None:intergenic
CTGATGATGATCCAGATGAG+AGG 0.693997 2_1:+58655465 None:intergenic
TCTTTGAAGATATGAATCGG+AGG 0.701302 2_1:+58658354 None:intergenic
GAACGCATGGATGTGATAGG+TGG 0.705174 2_1:-58655641 Msa0214220:CDS
CCAGTGTGAATATATAGCTG+CGG 0.708057 2_1:+58655425 None:intergenic
GGGATCAGGATGCCCCACAG+CGG 0.711509 2_1:-58655221 Msa0214220:CDS
CAACTGCTCGATCACCCCAG+AGG 0.741309 2_1:-58655364 Msa0214220:CDS
TTTCCGGCTAGATGACGTCG+GGG 0.741931 2_1:-58658250 Msa0214220:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTAATTTTAGTATTAATT+TGG - chr2_1:58654852-58654871 Msa0214220:intron 10.0%
!!! TGATATATTTTTTTGTTCAT+CGG - chr2_1:58654494-58654513 Msa0214220:three_prime_UTR 15.0%
!! CATAATAATTTCAACAAAAA+TGG + chr2_1:58655182-58655201 None:intergenic 15.0%
!!! TATGATTTTGTTGTTATTTT+TGG - chr2_1:58655278-58655297 Msa0214220:CDS 15.0%
!! TAATGAAAATGTTTATTTCA+AGG - chr2_1:58657130-58657149 Msa0214220:intron 15.0%
!! AATGAAAATGTTTATTTCAA+GGG - chr2_1:58657131-58657150 Msa0214220:intron 15.0%
!!! TTATTCTTTTATTTTCTCTA+AGG - chr2_1:58658193-58658212 Msa0214220:CDS 15.0%
!! TTCATATTCAAAGTAAAATT+AGG - chr2_1:58658361-58658380 Msa0214220:five_prime_UTR 15.0%
!!! TTTATTGTTTTTTTCTTCAC+CGG - chr2_1:58654523-58654542 Msa0214220:three_prime_UTR 20.0%
!! AAAAAAAATTGTTATGCATG+TGG - chr2_1:58654951-58654970 Msa0214220:CDS 20.0%
!! AAAAAAATTGTTATGCATGT+GGG - chr2_1:58654952-58654971 Msa0214220:CDS 20.0%
!! TGAAATTATTATGTGTATCT+AGG - chr2_1:58655189-58655208 Msa0214220:CDS 20.0%
!!! TTGTTGTTATTTTTGGTTTA+TGG - chr2_1:58655285-58655304 Msa0214220:CDS 20.0%
!!! GTTAGATTCTTTCTTTTTTT+AGG - chr2_1:58655329-58655348 Msa0214220:CDS 20.0%
!!! AAAAATGGTATTTTGAGATT+TGG - chr2_1:58655525-58655544 Msa0214220:CDS 20.0%
!!! GTGATATTTCTTCTTTTTTT+AGG - chr2_1:58655737-58655756 Msa0214220:intron 20.0%
!!! ATATTTCTTCTTTTTTTAGG+AGG - chr2_1:58655740-58655759 Msa0214220:intron 20.0%
!! AATAAATGCAAAAACGAAAA+TGG + chr2_1:58655953-58655972 None:intergenic 20.0%
!!! GTTTTTGCATTTATTGTTTT+TGG - chr2_1:58655958-58655977 Msa0214220:intron 20.0%
!! AAAAGATGAATAGAAAAATG+TGG - chr2_1:58655982-58656001 Msa0214220:intron 20.0%
!! TGAACAAAAATTAACCAAAA+TGG - chr2_1:58656084-58656103 Msa0214220:intron 20.0%
!!! ATATGATATGTCAATTTTGT+AGG + chr2_1:58656199-58656218 None:intergenic 20.0%
!! AAAAACTTGATGTATTATTG+AGG - chr2_1:58656350-58656369 Msa0214220:intron 20.0%
!! AAAACTTGATGTATTATTGA+GGG - chr2_1:58656351-58656370 Msa0214220:intron 20.0%
!! AGAATTATTTAACAGAATGT+AGG + chr2_1:58656598-58656617 None:intergenic 20.0%
!! AATATACTAAAAGCTATCAA+TGG - chr2_1:58656635-58656654 Msa0214220:intron 20.0%
!!! AGATTTAATTCCTTTTTAAG+CGG + chr2_1:58656850-58656869 None:intergenic 20.0%
!!! ATATTAGATGCTTTATTGAA+GGG - chr2_1:58656992-58657011 Msa0214220:intron 20.0%
!!! TATATCATTTTAGCAACTAA+TGG + chr2_1:58657049-58657068 None:intergenic 20.0%
!! ATATTATGTAGAAAAGTTAG+AGG - chr2_1:58658124-58658143 Msa0214220:CDS 20.0%
!! TTATGTATACAACTTTAGTT+AGG - chr2_1:58658240-58658259 Msa0214220:CDS 20.0%
!! AGAAAATTGGAAAAGATATA+TGG + chr2_1:58658456-58658475 None:intergenic 20.0%
!! AAAAACAAGTGATAGAAAAT+TGG + chr2_1:58658469-58658488 None:intergenic 20.0%
!!! TGTTTTTCTGATTTTATTTC+AGG - chr2_1:58658482-58658501 Msa0214220:five_prime_UTR 20.0%
!!! GTTTTTCTGATTTTATTTCA+GGG - chr2_1:58658483-58658502 Msa0214220:five_prime_UTR 20.0%
!! TTTCAGAAATCTAAGAAAAA+TGG + chr2_1:58658521-58658540 None:intergenic 20.0%
! AATTTGGAAGAAATTGAGAA+CGG + chr2_1:58654391-58654410 None:intergenic 25.0%
! AAAAAATTGTTATGCATGTG+GGG - chr2_1:58654953-58654972 Msa0214220:CDS 25.0%
! GTAATGTGATTACAAGAATT+AGG - chr2_1:58655307-58655326 Msa0214220:CDS 25.0%
!!! ATTCGTGAGAAATATTTTGA+GGG - chr2_1:58655476-58655495 Msa0214220:CDS 25.0%
! TAGATCGTCATCAATAATAA+AGG + chr2_1:58655826-58655845 None:intergenic 25.0%
! ACGAAAATGGAAAAAGTAAA+AGG + chr2_1:58655940-58655959 None:intergenic 25.0%
! AAGCAAACATCTAACTTATT+AGG - chr2_1:58656134-58656153 Msa0214220:intron 25.0%
! ACAGTATATAAAACATCAAC+TGG + chr2_1:58656160-58656179 None:intergenic 25.0%
!! TTCTATTTGGGATATTAATC+TGG + chr2_1:58656252-58656271 None:intergenic 25.0%
! AACATTGAAGAGTTCTATTT+GGG + chr2_1:58656264-58656283 None:intergenic 25.0%
! TTACTAGTGTTCTTCAATAA+TGG - chr2_1:58656294-58656313 Msa0214220:intron 25.0%
! CTATCAATGGTAGAATTTAA+GGG - chr2_1:58656648-58656667 Msa0214220:intron 25.0%
!!! AATCAAAATCATTTTTGCAG+TGG + chr2_1:58656688-58656707 None:intergenic 25.0%
!!! ATTTTGATTGTGATTAAAGC+AGG - chr2_1:58656699-58656718 Msa0214220:intron 25.0%
!!! TTTTGATTGTGATTAAAGCA+GGG - chr2_1:58656700-58656719 Msa0214220:intron 25.0%
! TGAAAAAGAGATGAATAGTT+TGG + chr2_1:58656740-58656759 None:intergenic 25.0%
! GAAATCAATTTAGTGCTTTA+AGG + chr2_1:58656783-58656802 None:intergenic 25.0%
!!! GATTTAATTCCTTTTTAAGC+GGG + chr2_1:58656849-58656868 None:intergenic 25.0%
! GAAAAAGAACTTCCTATTAT+TGG + chr2_1:58656935-58656954 None:intergenic 25.0%
!! AAAATATAACTTGCATGCAA+TGG + chr2_1:58656966-58656985 None:intergenic 25.0%
!! CATATTAGATGCTTTATTGA+AGG - chr2_1:58656991-58657010 Msa0214220:intron 25.0%
!!! ATTTATGCAGCACTTTTTTT+TGG + chr2_1:58658063-58658082 None:intergenic 25.0%
! AGACTCAAATTTCATATTGA+GGG + chr2_1:58658101-58658120 None:intergenic 25.0%
!!! ATTTTTCAACCCTTTCATTT+TGG - chr2_1:58658272-58658291 Msa0214220:five_prime_UTR 25.0%
! AAAGATCAATATACCTGTAA+TGG - chr2_1:58658326-58658345 Msa0214220:five_prime_UTR 25.0%
! AATTGGAAAAGATATATGGT+AGG + chr2_1:58658452-58658471 None:intergenic 25.0%
ATTTGGAAGAAATTGAGAAC+GGG + chr2_1:58654390-58654409 None:intergenic 30.0%
! AGCTCTTTGAAGATATGAAT+CGG + chr2_1:58654460-58654479 None:intergenic 30.0%
TCATTGTTATCGCAATGTTT+CGG + chr2_1:58654698-58654717 None:intergenic 30.0%
CAATGATTCTCCAAATCAAA+AGG - chr2_1:58655038-58655057 Msa0214220:CDS 30.0%
ATTATGTGTATCTAGGTGTT+TGG - chr2_1:58655196-58655215 Msa0214220:CDS 30.0%
! GATTCGTGAGAAATATTTTG+AGG - chr2_1:58655475-58655494 Msa0214220:CDS 30.0%
!! TTCGTGAGAAATATTTTGAG+GGG - chr2_1:58655477-58655496 Msa0214220:CDS 30.0%
!!! TTTTGAGATTTGGACTTTTG+AGG - chr2_1:58655535-58655554 Msa0214220:CDS 30.0%
!! TTTGAGATTTGGACTTTTGA+GGG - chr2_1:58655536-58655555 Msa0214220:CDS 30.0%
AACTACCCTTAAATTCAGAA+GGG + chr2_1:58655592-58655611 None:intergenic 30.0%
AAACTACCCTTAAATTCAGA+AGG + chr2_1:58655593-58655612 None:intergenic 30.0%
! TCTGAATTTAAGGGTAGTTT+TGG - chr2_1:58655593-58655612 Msa0214220:CDS 30.0%
!!! GGTAGTTTTGATGTATGATT+TGG - chr2_1:58655614-58655633 Msa0214220:CDS 30.0%
AAGAAATATCACGAGAAGTA+AGG + chr2_1:58655729-58655748 None:intergenic 30.0%
!! ATTGATGACGATCTATAAAC+TGG - chr2_1:58655831-58655850 Msa0214220:intron 30.0%
TATTGAGGACAAACAAAACT+GGG + chr2_1:58655892-58655911 None:intergenic 30.0%
CTTTGTGAATTAAAAGTGAC+AGG - chr2_1:58656050-58656069 Msa0214220:intron 30.0%
!!! AACTGTATTGATTGCCATTT+TGG + chr2_1:58656101-58656120 None:intergenic 30.0%
GAACATTGAAGAGTTCTATT+TGG + chr2_1:58656265-58656284 None:intergenic 30.0%
ACTCTTCAATGTTCAACTAT+AGG - chr2_1:58656271-58656290 Msa0214220:intron 30.0%
! AGTGTTCTTCAATAATGGAA+TGG - chr2_1:58656299-58656318 Msa0214220:intron 30.0%
TATTATTGAGGGATAACTGT+AGG - chr2_1:58656362-58656381 Msa0214220:intron 30.0%
!! GTTTCTAGTAACTGATTCAA+TGG - chr2_1:58656456-58656475 Msa0214220:intron 30.0%
AAAATCAATACATGCAGAGA+AGG + chr2_1:58656519-58656538 None:intergenic 30.0%
TTACTTTCACCAAAGACAAA+AGG - chr2_1:58656537-58656556 Msa0214220:intron 30.0%
GCTATCAATGGTAGAATTTA+AGG - chr2_1:58656647-58656666 Msa0214220:intron 30.0%
!! TAGTGCTTTAAGGTTTGTTA+GGG + chr2_1:58656773-58656792 None:intergenic 30.0%
!! TTAGTGCTTTAAGGTTTGTT+AGG + chr2_1:58656774-58656793 None:intergenic 30.0%
! AATTGATTTCACTGTTAACC+TGG - chr2_1:58656793-58656812 Msa0214220:intron 30.0%
TTGCTACAATGTCCAATAAT+AGG - chr2_1:58656920-58656939 Msa0214220:intron 30.0%
! GCATGCAAGTTATATTTTGT+TGG - chr2_1:58656968-58656987 Msa0214220:intron 30.0%
ATTTCAGATGAATTTGCCTT+TGG - chr2_1:58657779-58657798 Msa0214220:intron 30.0%
AGTGACAACATTTGAAAAAC+TGG - chr2_1:58657910-58657929 Msa0214220:intron 30.0%
GTGACAACATTTGAAAAACT+GGG - chr2_1:58657911-58657930 Msa0214220:intron 30.0%
GACTCAAATTTCATATTGAG+GGG + chr2_1:58658100-58658119 None:intergenic 30.0%
CAGACTCAAATTTCATATTG+AGG + chr2_1:58658102-58658121 None:intergenic 30.0%
TATGTAGAAAAGTTAGAGGA+TGG - chr2_1:58658128-58658147 Msa0214220:CDS 30.0%
TATACAACTTTAGTTAGGTG+TGG - chr2_1:58658245-58658264 Msa0214220:exon 30.0%
ATACAACTTTAGTTAGGTGT+GGG - chr2_1:58658246-58658265 Msa0214220:exon 30.0%
CATGATTGACCAAAATGAAA+GGG + chr2_1:58658284-58658303 None:intergenic 30.0%
ACATGATTGACCAAAATGAA+AGG + chr2_1:58658285-58658304 None:intergenic 30.0%
ATCTTTCCAATAGTATCTGA+GGG + chr2_1:58658312-58658331 None:intergenic 30.0%
!! TCAATATACCTGTAATGGAT+TGG - chr2_1:58658331-58658350 Msa0214220:five_prime_UTR 30.0%
!! CAATATACCTGTAATGGATT+GGG - chr2_1:58658332-58658351 Msa0214220:five_prime_UTR 30.0%
AATTTGCATTGAACTTCCTT+TGG + chr2_1:58658413-58658432 None:intergenic 30.0%
AAGGAAGTTCAATGCAAATT+CGG - chr2_1:58658413-58658432 Msa0214220:five_prime_UTR 30.0%
GCAAATTCGGATTGAATTAT+AGG - chr2_1:58658426-58658445 Msa0214220:five_prime_UTR 30.0%
!! TTTTTGAAGAAACGCGTTGA+AGG + chr2_1:58654264-58654283 None:intergenic 35.0%
ACGTTTGAAGGAGTTGAATT+TGG + chr2_1:58654407-58654426 None:intergenic 35.0%
TACAAAACGACTACGTTTGA+AGG + chr2_1:58654419-58654438 None:intergenic 35.0%
! TCTTTGAAGATATGAATCGG+AGG + chr2_1:58654457-58654476 None:intergenic 35.0%
!!! ATTGTTTTTTTCTTCACCGG+CGG - chr2_1:58654526-58654545 Msa0214220:three_prime_UTR 35.0%
AAAGCTCTTTGTAATGAAGC+TGG - chr2_1:58654725-58654744 Msa0214220:three_prime_UTR 35.0%
GATTCTCCAAATCAAAAGGA+CGG - chr2_1:58655042-58655061 Msa0214220:CDS 35.0%
!! CTTTTTCCGTCCTTTTGATT+TGG + chr2_1:58655051-58655070 None:intergenic 35.0%
! ACAATTTCGATCAGAAGTGT+AGG + chr2_1:58655093-58655112 None:intergenic 35.0%
!!! GCTGCGTTTAATGTTACTTT+TGG - chr2_1:58655253-58655272 Msa0214220:CDS 35.0%
!!! TTTCTTTTTTTAGGACTCGC+CGG - chr2_1:58655338-58655357 Msa0214220:CDS 35.0%
AGCACTAAAGATTCTCTCTA+TGG - chr2_1:58655422-58655441 Msa0214220:CDS 35.0%
GAGGGTGAAAGGAAAAAAAA+TGG - chr2_1:58655510-58655529 Msa0214220:CDS 35.0%
ACATGACCCTTCTGAATTTA+AGG - chr2_1:58655583-58655602 Msa0214220:CDS 35.0%
CATGACCCTTCTGAATTTAA+GGG - chr2_1:58655584-58655603 Msa0214220:CDS 35.0%
!!! CTTCTTTTTTTAGGAGGTTG+CGG - chr2_1:58655746-58655765 Msa0214220:intron 35.0%
GATCTATAAACTGGAAAGAG+TGG - chr2_1:58655840-58655859 Msa0214220:intron 35.0%
ATTGAGGACAAACAAAACTG+GGG + chr2_1:58655891-58655910 None:intergenic 35.0%
CTATTGAGGACAAACAAAAC+TGG + chr2_1:58655893-58655912 None:intergenic 35.0%
!!! CAGTTTTGTTTGTCCTCAAT+AGG - chr2_1:58655891-58655910 Msa0214220:intron 35.0%
ACGTGTGTAACTGTGTTTAA+AGG - chr2_1:58656011-58656030 Msa0214220:intron 35.0%
CGTGTGTAACTGTGTTTAAA+GGG - chr2_1:58656012-58656031 Msa0214220:intron 35.0%
GTGTGTAACTGTGTTTAAAG+GGG - chr2_1:58656013-58656032 Msa0214220:intron 35.0%
TGTGTAACTGTGTTTAAAGG+GGG - chr2_1:58656014-58656033 Msa0214220:intron 35.0%
!! AGGAGTATTAGTACAGTTTG+AGG - chr2_1:58656426-58656445 Msa0214220:intron 35.0%
! GGAGTATTAGTACAGTTTGA+GGG - chr2_1:58656427-58656446 Msa0214220:intron 35.0%
!! GATGAATAGTTTGGAGCTTT+TGG + chr2_1:58656731-58656750 None:intergenic 35.0%
! TAGATTTTTGCATCATAGCC+AGG + chr2_1:58656814-58656833 None:intergenic 35.0%
GACTGTATATACTGATCTAC+AGG - chr2_1:58656890-58656909 Msa0214220:intron 35.0%
! TTAGCAACTAATGGATCGAT+AGG + chr2_1:58657040-58657059 None:intergenic 35.0%
ACCATTAGGATTTACAGCAT+GGG + chr2_1:58657291-58657310 None:intergenic 35.0%
! TACTAATCCATTTGGCTTCA+GGG - chr2_1:58657640-58657659 Msa0214220:intron 35.0%
! TCTGAAATAGCTTCAGACAT+TGG + chr2_1:58657767-58657786 None:intergenic 35.0%
AAATGTTGTCACTACTTACC+TGG + chr2_1:58657903-58657922 None:intergenic 35.0%
ACCTGAATTCATATTGTTGC+AGG - chr2_1:58658013-58658032 Msa0214220:intron 35.0%
ACCTGCAACAATATGAATTC+AGG + chr2_1:58658017-58658036 None:intergenic 35.0%
CTGCATAAATGAATAGTCAG+TGG - chr2_1:58658073-58658092 Msa0214220:CDS 35.0%
AAAGTTAGAGGATGGAGTTA+AGG - chr2_1:58658136-58658155 Msa0214220:CDS 35.0%
TACAACTTTAGTTAGGTGTG+GGG - chr2_1:58658247-58658266 Msa0214220:exon 35.0%
GTTAAACCCTCAGATACTAT+TGG - chr2_1:58658303-58658322 Msa0214220:five_prime_UTR 35.0%
GATCTTTCCAATAGTATCTG+AGG + chr2_1:58658313-58658332 None:intergenic 35.0%
AGTTAACGGTGAATGTTGAC+CGG + chr2_1:58654313-58654332 None:intergenic 40.0%
CATTCACCGTTAACTAACTC+CGG - chr2_1:58654318-58654337 Msa0214220:three_prime_UTR 40.0%
TGATTGGATCTAAGAACGTG+AGG + chr2_1:58654355-58654374 None:intergenic 40.0%
!! CGGGAGAATTTTGATCTGAT+TGG + chr2_1:58654371-58654390 None:intergenic 40.0%
AGGAGAGAGAGAATAACAAG+AGG - chr2_1:58654600-58654619 Msa0214220:three_prime_UTR 40.0%
AGAATAACAAGAGGAGAGAG+AGG - chr2_1:58654609-58654628 Msa0214220:three_prime_UTR 40.0%
! TTCTCCGGTTTGAGAATGTA+TGG - chr2_1:58654659-58654678 Msa0214220:three_prime_UTR 40.0%
! TCTCCGGTTTGAGAATGTAT+GGG - chr2_1:58654660-58654679 Msa0214220:three_prime_UTR 40.0%
GTTCCCATACATTCTCAAAC+CGG + chr2_1:58654666-58654685 None:intergenic 40.0%
CTCTTTGTAATGAAGCTGGT+TGG - chr2_1:58654729-58654748 Msa0214220:three_prime_UTR 40.0%
TTACGATACGTTGTACCATC+AGG + chr2_1:58654764-58654783 None:intergenic 40.0%
TGATGGTACAACGTATCGTA+AGG - chr2_1:58654763-58654782 Msa0214220:three_prime_UTR 40.0%
AGTGTCATGTGCTATATTGC+TGG + chr2_1:58654997-58655016 None:intergenic 40.0%
TCTGTCTACACTGATACACT+CGG + chr2_1:58655225-58655244 None:intergenic 40.0%
!! TTGCTGAGCTTGTTGCTATT+TGG - chr2_1:58655650-58655669 Msa0214220:CDS 40.0%
! TATTTGGCAGAAGCTTTTGC+AGG - chr2_1:58655666-58655685 Msa0214220:intron 40.0%
CATTGCATGGTACTCTGATT+TGG - chr2_1:58655689-58655708 Msa0214220:intron 40.0%
AACCAAGGAAAGTCCTATTG+AGG + chr2_1:58655907-58655926 None:intergenic 40.0%
TCAATAGGACTTTCCTTGGT+TGG - chr2_1:58655906-58655925 Msa0214220:intron 40.0%
CAATAGGACTTTCCTTGGTT+GGG - chr2_1:58655907-58655926 Msa0214220:intron 40.0%
AAAGGAAAGAAACCCAACCA+AGG + chr2_1:58655922-58655941 None:intergenic 40.0%
! TTTTCCCCACTGACATTTGT+AGG - chr2_1:58656392-58656411 Msa0214220:intron 40.0%
TACTCCTACAAATGTCAGTG+GGG + chr2_1:58656399-58656418 None:intergenic 40.0%
CTACTCCTACAAATGTCAGT+GGG + chr2_1:58656400-58656419 None:intergenic 40.0%
ATTTGTAGGAGTAGGACTGT+AGG - chr2_1:58656406-58656425 Msa0214220:intron 40.0%
CACCAAAGACAAAAGGATGT+TGG - chr2_1:58656544-58656563 Msa0214220:intron 40.0%
! GACCAACATCCTTTTGTCTT+TGG + chr2_1:58656549-58656568 None:intergenic 40.0%
CAATGGTAGAATTTAAGGGC+TGG - chr2_1:58656652-58656671 Msa0214220:intron 40.0%
!! TTAAGGTTTGTTAGGGAGGA+CGG + chr2_1:58656766-58656785 None:intergenic 40.0%
!! TGCTTTAAGGTTTGTTAGGG+AGG + chr2_1:58656770-58656789 None:intergenic 40.0%
ACATTCTTGCCCGCTTAAAA+AGG - chr2_1:58656837-58656856 Msa0214220:intron 40.0%
TGACATGGTAAGATGAACAC+GGG + chr2_1:58657208-58657227 None:intergenic 40.0%
CTGACATGGTAAGATGAACA+CGG + chr2_1:58657209-58657228 None:intergenic 40.0%
TCCCATGCTGTAAATCCTAA+TGG - chr2_1:58657287-58657306 Msa0214220:intron 40.0%
CACCATTAGGATTTACAGCA+TGG + chr2_1:58657292-58657311 None:intergenic 40.0%
GCTGTAAATCCTAATGGTGA+TGG - chr2_1:58657293-58657312 Msa0214220:intron 40.0%
AGGGAATTTCCATCACCATT+AGG + chr2_1:58657305-58657324 None:intergenic 40.0%
ATGGAAATTCCCTCATTCCA+TGG - chr2_1:58657312-58657331 Msa0214220:intron 40.0%
!! GTTTTTGAGCCATGGAATGA+GGG + chr2_1:58657324-58657343 None:intergenic 40.0%
AATATATAGCTGCGGAAGCT+TGG + chr2_1:58657378-58657397 None:intergenic 40.0%
CCAGTGTGAATATATAGCTG+CGG + chr2_1:58657386-58657405 None:intergenic 40.0%
!! CAAATGGATTAGTAGCGACT+AGG + chr2_1:58657634-58657653 None:intergenic 40.0%
CTAGTCGCTACTAATCCATT+TGG - chr2_1:58657632-58657651 Msa0214220:intron 40.0%
! CTACTAATCCATTTGGCTTC+AGG - chr2_1:58657639-58657658 Msa0214220:intron 40.0%
CATCTGATCCAGAATCTTCA+TGG + chr2_1:58657850-58657869 None:intergenic 40.0%
! GATGATTTAGAGCTCACTCT+TGG - chr2_1:58657866-58657885 Msa0214220:intron 40.0%
!! ATACCTGTAATGGATTGGGT+TGG - chr2_1:58658336-58658355 Msa0214220:five_prime_UTR 40.0%
ATACCAACCCAATCCATTAC+AGG + chr2_1:58658342-58658361 None:intergenic 40.0%
AAATGTACCTGCATGACCAA+AGG - chr2_1:58658394-58658413 Msa0214220:five_prime_UTR 40.0%
! CAATTCTCCGACGAGTTTTC+CGG - chr2_1:58654291-58654310 Msa0214220:three_prime_UTR 45.0%
ATGTTGACCGGAAAACTCGT+CGG + chr2_1:58654301-58654320 None:intergenic 45.0%
ACTTCGCCGGAGTTAGTTAA+CGG + chr2_1:58654327-58654346 None:intergenic 45.0%
TTGGATCTAAGAACGTGAGG+TGG + chr2_1:58654352-58654371 None:intergenic 45.0%
! TTTTTCCGGCTAGATGACGT+CGG - chr2_1:58654556-58654575 Msa0214220:three_prime_UTR 45.0%
ATAGCAGCGAAGATCTTCTC+CGG - chr2_1:58654644-58654663 Msa0214220:three_prime_UTR 45.0%
TGTAGGTGCTAAAGAGCTCT+AGG + chr2_1:58655076-58655095 None:intergenic 45.0%
GCTTCACGCTTAAAAGCGAA+AGG + chr2_1:58655405-58655424 None:intergenic 45.0%
!! AAGCTTTTGCAGGCATTGCA+TGG - chr2_1:58655676-58655695 Msa0214220:intron 45.0%
GTCCTCAATAGGACTTTCCT+TGG - chr2_1:58655902-58655921 Msa0214220:intron 45.0%
CCTACTCCTACAAATGTCAG+TGG + chr2_1:58656401-58656420 None:intergenic 45.0%
CCACTGACATTTGTAGGAGT+AGG - chr2_1:58656398-58656417 Msa0214220:intron 45.0%
! TGTGATAGGTGGTTCTGCAA+TGG - chr2_1:58657178-58657197 Msa0214220:intron 45.0%
! GTGATAGGTGGTTCTGCAAT+GGG - chr2_1:58657179-58657198 Msa0214220:intron 45.0%
!! GGTTTTTGAGCCATGGAATG+AGG + chr2_1:58657325-58657344 None:intergenic 45.0%
!! GATGAGAGGTTTTTGAGCCA+TGG + chr2_1:58657332-58657351 None:intergenic 45.0%
TGGCTCAAAAACCTCTCATC+TGG - chr2_1:58657332-58657351 Msa0214220:intron 45.0%
! CTGATGATGATCCAGATGAG+AGG + chr2_1:58657346-58657365 None:intergenic 45.0%
CCGCAGCTATATATTCACAC+TGG - chr2_1:58657383-58657402 Msa0214220:intron 45.0%
AATCTGGGTCAAGAACTTGG+CGG + chr2_1:58657559-58657578 None:intergenic 45.0%
ACCAATCTGGGTCAAGAACT+TGG + chr2_1:58657562-58657581 None:intergenic 45.0%
!! TTGACCCAGATTGGTTTGCT+GGG - chr2_1:58657567-58657586 Msa0214220:intron 45.0%
TGATCCCAGCAAACCAATCT+GGG + chr2_1:58657574-58657593 None:intergenic 45.0%
ATTAGTAGCGACTAGGCTGA+AGG + chr2_1:58657627-58657646 None:intergenic 45.0%
! TTCAGGGAAGAGGTTTTCTG+TGG - chr2_1:58657656-58657675 Msa0214220:intron 45.0%
AACATGTCCCACTTTGTCCA+GGG + chr2_1:58657703-58657722 None:intergenic 45.0%
! ATGTTCTCCAGCTTTAGCTG+CGG - chr2_1:58657718-58657737 Msa0214220:intron 45.0%
!! AGTTGGTTTGGTGAAGCCTT+GGG - chr2_1:58657811-58657830 Msa0214220:intron 45.0%
GAGAGGATCCATGAAGATTC+TGG - chr2_1:58657839-58657858 Msa0214220:intron 45.0%
! CACTACTTACCTGGTCTTTG+AGG + chr2_1:58657894-58657913 None:intergenic 45.0%
TGAACTTCCTTTGGTCATGC+AGG + chr2_1:58658404-58658423 None:intergenic 45.0%
!! AATAAAAGAATAAAATAAAA+TGG + chr2_1:58658186-58658205 None:intergenic 5.0%
CCGGAAAAAATTCTCACCGC+CGG + chr2_1:58654545-58654564 None:intergenic 50.0%
!!! CCGGCGGTGAGAATTTTTTC+CGG - chr2_1:58654542-58654561 Msa0214220:three_prime_UTR 50.0%
! TTTTCCGGCTAGATGACGTC+GGG - chr2_1:58654557-58654576 Msa0214220:three_prime_UTR 50.0%
TTCTCTCTCTCCTTCCACGT+TGG + chr2_1:58654593-58654612 None:intergenic 50.0%
CGACCAGATCTAACGTACAC+CGG + chr2_1:58655360-58655379 None:intergenic 50.0%
CGGTGTACGTTAGATCTGGT+CGG - chr2_1:58655358-58655377 Msa0214220:CDS 50.0%
GGTGTACGTTAGATCTGGTC+GGG - chr2_1:58655359-58655378 Msa0214220:CDS 50.0%
GTGTACGTTAGATCTGGTCG+GGG - chr2_1:58655360-58655379 Msa0214220:CDS 50.0%
! TTTGAGGGGCATAGATCTCG+AGG - chr2_1:58655491-58655510 Msa0214220:CDS 50.0%
! TTGAGGGGCATAGATCTCGA+GGG - chr2_1:58655492-58655511 Msa0214220:CDS 50.0%
GCATAGATCTCGAGGGTGAA+AGG - chr2_1:58655499-58655518 Msa0214220:CDS 50.0%
TTTCAAGGGATGCAAGCCTG+CGG - chr2_1:58657145-58657164 Msa0214220:intron 50.0%
GAACGCATGGATGTGATAGG+TGG - chr2_1:58657167-58657186 Msa0214220:intron 50.0%
! CTTGGGTTGTAGGAAGCACA+GGG + chr2_1:58657233-58657252 None:intergenic 50.0%
! ACTTGGGTTGTAGGAAGCAC+AGG + chr2_1:58657234-58657253 None:intergenic 50.0%
AGGAAGAAGAGCCAGGACTT+GGG + chr2_1:58657250-58657269 None:intergenic 50.0%
AAGGAAGAAGAGCCAGGACT+TGG + chr2_1:58657251-58657270 None:intergenic 50.0%
TTTACAGCATGGGATGAGCG+CGG + chr2_1:58657281-58657300 None:intergenic 50.0%
AGGATCAGTCTACTCGTCCT+GGG - chr2_1:58657480-58657499 Msa0214220:intron 50.0%
GCCAAGTTCTTGACCCAGAT+TGG - chr2_1:58657558-58657577 Msa0214220:intron 50.0%
!! CTTGACCCAGATTGGTTTGC+TGG - chr2_1:58657566-58657585 Msa0214220:intron 50.0%
CTGATCCCAGCAAACCAATC+TGG + chr2_1:58657575-58657594 None:intergenic 50.0%
!! CAGATTGGTTTGCTGGGATC+AGG - chr2_1:58657573-58657592 Msa0214220:intron 50.0%
! TCCATTTGGCTTCAGGGAAG+AGG - chr2_1:58657646-58657665 Msa0214220:intron 50.0%
ACCTCTTCCCTGAAGCCAAA+TGG + chr2_1:58657650-58657669 None:intergenic 50.0%
ACATGTCCCACTTTGTCCAG+GGG + chr2_1:58657702-58657721 None:intergenic 50.0%
GAACATGTCCCACTTTGTCC+AGG + chr2_1:58657704-58657723 None:intergenic 50.0%
! TGTTCTCCAGCTTTAGCTGC+GGG - chr2_1:58657719-58657738 Msa0214220:intron 50.0%
ACCAACTGCACTGCTTCCAA+AGG + chr2_1:58657798-58657817 None:intergenic 50.0%
TGGAAGCAGTGCAGTTGGTT+TGG - chr2_1:58657799-58657818 Msa0214220:intron 50.0%
!! CAGTTGGTTTGGTGAAGCCT+TGG - chr2_1:58657810-58657829 Msa0214220:intron 50.0%
CTCTTGGTACCTCAAAGACC+AGG - chr2_1:58657882-58657901 Msa0214220:intron 50.0%
ACGTGAGGTGGTTACTTCGC+CGG + chr2_1:58654340-58654359 None:intergenic 55.0%
TTTCCGGCTAGATGACGTCG+GGG - chr2_1:58654558-58654577 Msa0214220:three_prime_UTR 55.0%
GGTTGGATCGTTGAGCCTGA+TGG - chr2_1:58654746-58654765 Msa0214220:three_prime_UTR 55.0%
TCGCCGGTGTACGTTAGATC+TGG - chr2_1:58655354-58655373 Msa0214220:CDS 55.0%
ATCACATCCATGCGTTCCGC+AGG + chr2_1:58657164-58657183 None:intergenic 55.0%
GCGGAACGCATGGATGTGAT+AGG - chr2_1:58657164-58657183 Msa0214220:intron 55.0%
! AGGAAGCACAGGGACTGACA+TGG + chr2_1:58657223-58657242 None:intergenic 55.0%
GCTTCCTACAACCCAAGTCC+TGG - chr2_1:58657236-58657255 Msa0214220:intron 55.0%
! AGAGCCAGGACTTGGGTTGT+AGG + chr2_1:58657243-58657262 None:intergenic 55.0%
CTAGGGAAGGAAGAAGAGCC+AGG + chr2_1:58657257-58657276 None:intergenic 55.0%
TTACAGCATGGGATGAGCGC+GGG + chr2_1:58657280-58657299 None:intergenic 55.0%
TAGCTGCGGAAGCTTGGAAG+AGG + chr2_1:58657372-58657391 None:intergenic 55.0%
!! AGGAGTGACAGGAGCACTGA+TGG + chr2_1:58657411-58657430 None:intergenic 55.0%
GAGCTAAGTGGAGGAGTGAC+AGG + chr2_1:58657422-58657441 None:intergenic 55.0%
GCAGTTGGAGAGCTAAGTGG+AGG + chr2_1:58657431-58657450 None:intergenic 55.0%
CGAGCAGTTGGAGAGCTAAG+TGG + chr2_1:58657434-58657453 None:intergenic 55.0%
ACCCCAGAGGAAAGCTGACT+GGG - chr2_1:58657457-58657476 Msa0214220:intron 55.0%
TCCCAGTCAGCTTTCCTCTG+GGG + chr2_1:58657461-58657480 None:intergenic 55.0%
CTCCCAGTCAGCTTTCCTCT+GGG + chr2_1:58657462-58657481 None:intergenic 55.0%
GAGGATCAGTCTACTCGTCC+TGG - chr2_1:58657479-58657498 Msa0214220:intron 55.0%
ATCAGTCTACTCGTCCTGGG+TGG - chr2_1:58657483-58657502 Msa0214220:intron 55.0%
TCAGTCTACTCGTCCTGGGT+GGG - chr2_1:58657484-58657503 Msa0214220:intron 55.0%
AGGAGAAGTTTGCCCGCTGT+GGG + chr2_1:58657603-58657622 None:intergenic 55.0%
TAGGAGAAGTTTGCCCGCTG+TGG + chr2_1:58657604-58657623 None:intergenic 55.0%
GTAGCGACTAGGCTGAAGGT+AGG + chr2_1:58657623-58657642 None:intergenic 55.0%
TTTGTCCAGGGGTCCACATG+CGG + chr2_1:58657691-58657710 None:intergenic 55.0%
ATGTGGACCCCTGGACAAAG+TGG - chr2_1:58657692-58657711 Msa0214220:intron 55.0%
TGTGGACCCCTGGACAAAGT+GGG - chr2_1:58657693-58657712 Msa0214220:intron 55.0%
! GCCTTTGGAAGCAGTGCAGT+TGG - chr2_1:58657794-58657813 Msa0214220:intron 55.0%
!! GGTTTGGTGAAGCCTTGGGA+AGG - chr2_1:58657815-58657834 Msa0214220:intron 55.0%
TGAAGCCTTGGGAAGGAGAG+AGG - chr2_1:58657822-58657841 Msa0214220:intron 55.0%
TGGATCCTCTCTCCTTCCCA+AGG + chr2_1:58657830-58657849 None:intergenic 55.0%
GACGAGGCAACCAACGTGGA+AGG - chr2_1:58654580-58654599 Msa0214220:three_prime_UTR 60.0%
TCTGGTCGGGGTAGTGTCTG+AGG - chr2_1:58655372-58655391 Msa0214220:CDS 60.0%
ATGCAAGCCTGCGGAACGCA+TGG - chr2_1:58657154-58657173 Msa0214220:intron 60.0%
!! CTCTGGGGTGATCGAGCAGT+TGG + chr2_1:58657446-58657465 None:intergenic 60.0%
CAACTGCTCGATCACCCCAG+AGG - chr2_1:58657444-58657463 Msa0214220:intron 60.0%
CACCCCAGAGGAAAGCTGAC+TGG - chr2_1:58657456-58657475 Msa0214220:intron 60.0%
CCTCCCAGTCAGCTTTCCTC+TGG + chr2_1:58657463-58657482 None:intergenic 60.0%
CCAGAGGAAAGCTGACTGGG+AGG - chr2_1:58657460-58657479 Msa0214220:intron 60.0%
CAGTCTACTCGTCCTGGGTG+GGG - chr2_1:58657485-58657504 Msa0214220:intron 60.0%
TAGGAGGAGTGGAGGAAGGC+TGG + chr2_1:58657529-58657548 None:intergenic 60.0%
GGTCAAGAACTTGGCGGCCA+GGG + chr2_1:58657553-58657572 None:intergenic 60.0%
GGAGAAGTTTGCCCGCTGTG+GGG + chr2_1:58657602-58657621 None:intergenic 60.0%
GTGGCAGTGATTCCCGCATG+TGG - chr2_1:58657675-58657694 Msa0214220:intron 60.0%
TTGTCCAGGGGTCCACATGC+GGG + chr2_1:58657690-58657709 None:intergenic 60.0%
TCAGAGCCCGCAGCTAAAGC+TGG + chr2_1:58657728-58657747 None:intergenic 60.0%
CGTCCCCGACGTCATCTAGC+CGG + chr2_1:58654564-58654583 None:intergenic 65.0%
GCTAGATGACGTCGGGGACG+AGG - chr2_1:58654564-58654583 Msa0214220:three_prime_UTR 65.0%
! CATGGGATGAGCGCGGGCTA+GGG + chr2_1:58657274-58657293 None:intergenic 65.0%
TCTACTCGTCCTGGGTGGGG+TGG - chr2_1:58657488-58657507 Msa0214220:intron 65.0%
CTACTCGTCCTGGGTGGGGT+GGG - chr2_1:58657489-58657508 Msa0214220:intron 65.0%
GGGCTAGGAGGAGTGGAGGA+AGG + chr2_1:58657533-58657552 None:intergenic 65.0%
TCCTCCACTCCTCCTAGCCC+TGG - chr2_1:58657533-58657552 Msa0214220:intron 65.0%
AGAACTTGGCGGCCAGGGCT+AGG + chr2_1:58657548-58657567 None:intergenic 65.0%
GGGTCAAGAACTTGGCGGCC+AGG + chr2_1:58657554-58657573 None:intergenic 65.0%
GGGATCAGGATGCCCCACAG+CGG - chr2_1:58657587-58657606 Msa0214220:intron 65.0%
GGATCAGGATGCCCCACAGC+GGG - chr2_1:58657588-58657607 Msa0214220:intron 65.0%
GATTCCCGCATGTGGACCCC+TGG - chr2_1:58657683-58657702 Msa0214220:intron 65.0%
CGGGGACGAGGCAACCAACG+TGG - chr2_1:58654576-58654595 Msa0214220:three_prime_UTR 70.0%
!! GGATGAGCGCGGGCTAGGGA+AGG + chr2_1:58657270-58657289 None:intergenic 70.0%
GCATGGGATGAGCGCGGGCT+AGG + chr2_1:58657275-58657294 None:intergenic 70.0%
TACTGCTGCCCACCCCACCC+AGG + chr2_1:58657500-58657519 None:intergenic 70.0%
GCCAGGGCTAGGAGGAGTGG+AGG + chr2_1:58657537-58657556 None:intergenic 70.0%
ACTTGGCGGCCAGGGCTAGG+AGG + chr2_1:58657545-58657564 None:intergenic 70.0%
GCGGCCAGGGCTAGGAGGAG+TGG + chr2_1:58657540-58657559 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 58654261 58658569 58654261 ID=Msa0214220;Name=Msa0214220
chr2_1 mRNA 58654261 58658569 58654261 ID=Msa0214220-mRNA-1;Parent=Msa0214220;Name=Msa0214220-mRNA-1;_AED=0.26;_eAED=0.26;_QI=308|1|1|1|1|1|3|531|323
chr2_1 exon 58654261 58654795 58654261 ID=Msa0214220-mRNA-1:exon:16112;Parent=Msa0214220-mRNA-1
chr2_1 exon 58654927 58655678 58654927 ID=Msa0214220-mRNA-1:exon:16111;Parent=Msa0214220-mRNA-1
chr2_1 exon 58658046 58658569 58658046 ID=Msa0214220-mRNA-1:exon:16110;Parent=Msa0214220-mRNA-1
chr2_1 five_prime_UTR 58658262 58658569 58658262 ID=Msa0214220-mRNA-1:five_prime_utr;Parent=Msa0214220-mRNA-1
chr2_1 CDS 58658046 58658261 58658046 ID=Msa0214220-mRNA-1:cds;Parent=Msa0214220-mRNA-1
chr2_1 CDS 58654927 58655678 58654927 ID=Msa0214220-mRNA-1:cds;Parent=Msa0214220-mRNA-1
chr2_1 CDS 58654792 58654795 58654792 ID=Msa0214220-mRNA-1:cds;Parent=Msa0214220-mRNA-1
chr2_1 three_prime_UTR 58654261 58654791 58654261 ID=Msa0214220-mRNA-1:three_prime_utr;Parent=Msa0214220-mRNA-1
Gene Sequence

>Msa0214220

ATGACGTCGGGGACGAGGCAACCAACGTGGAAGGAGAGAGAGAATAACAAGAGGAGAGAGAGGAGAAGAAGAGCGATAGCAGCGAAGATCTTCTCCGGTTTGAGAATGTATGGGAACTATAAGCTTCCGAAACATTGCGATAACAATGAAGTTCTCAAAGCTCTTTGTAATGAAGCTGGTTGGATCGTTGAGCCTGATGGTACAACGTATCGTAAGGGATGCAAGCCTGCGGAACGCATGGATGTGATAGGTGGTTCTGCAATGGGAAGCCCGTGTTCATCTTACCATGTCAGTCCCTGTGCTTCCTACAACCCAAGTCCTGGCTCTTCTTCCTTCCCTAGCCCGCGCTCATCCCATGCTGTAAATCCTAATGGTGATGGAAATTCCCTCATTCCATGGCTCAAAAACCTCTCATCTGGATCATCATCAGCATCCTCTTCCAAGCTTCCGCAGCTATATATTCACACTGGTTCCATCAGTGCTCCTGTCACTCCTCCACTTAGCTCTCCAACTGCTCGATCACCCCAGAGGAAAGCTGACTGGGAGGATCAGTCTACTCGTCCTGGGTGGGGTGGGCAGCAGTACTCTTTCCAGCCTTCCTCCACTCCTCCTAGCCCTGGCCGCCAAGTTCTTGACCCAGATTGGTTTGCTGGGATCAGGATGCCCCACAGCGGGCAAACTTCTCCTACCTTCAGCCTAGTCGCTACTAATCCATTTGGCTTCAGGGAAGAGGTTTTCTGTGGCAGTGATTCCCGCATGTGGACCCCTGGACAAAGTGGGACATGTTCTCCAGCTTTAGCTGCGGGCTCTGATCATAATGCTGACATACCAATGTCTGAAGCTATTTCAGATGAATTTGCCTTTGGAAGCAGTGCAGTTGGTTTGGTGAAGCCTTGGGAAGGAGAGAGGATCCATGAAGATTCTGGATCAGATGATTTAGAGCTCACTCTTGGTACCTCAAAGACCAGGTAA
Protein sequence

>Msa0214220

MTSGTRQPTWKERENNKRRERRRRAIAAKIFSGLRMYGNYKLPKHCDNNEVLKALCNEAGWIVEPDGTTYRKGCKPAERMDVIGGSAMGSPCSSYHVSPCASYNPSPGSSSFPSPRSSHAVNPNGDGNSLIPWLKNLSSGSSSASSSKLPQLYIHTGSISAPVTPPLSSPTARSPQRKADWEDQSTRPGWGGQQYSFQPSSTPPSPGRQVLDPDWFAGIRMPHSGQTSPTFSLVATNPFGFREEVFCGSDSRMWTPGQSGTCSPALAAGSDHNADIPMSEAISDEFAFGSSAVGLVKPWEGERIHEDSGSDDLELTLGTSKTR*