Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214320 | AES66556.2 | 79.121 | 182 | 26 | 3 | 1 | 175 | 6 | 182 | 2.92e-96 | 287 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214320 | sp|Q8GWF1|WRK38_ARATH | 57.534 | 73 | 30 | 1 | 13 | 84 | 99 | 171 | 3.31e-23 | 96.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214320 | G7ITD8 | 79.121 | 182 | 26 | 3 | 1 | 175 | 6 | 182 | 1.39e-96 | 287 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0214320 | TF | WRKY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214320 | MtrunA17_Chr2g0315401 | 73.485 | 132 | 23 | 3 | 51 | 175 | 19 | 145 | 9.79e-62 | 188 |
| Msa0214320 | MtrunA17_Chr2g0315341 | 71.774 | 124 | 28 | 2 | 59 | 175 | 1 | 124 | 2.26e-56 | 174 |
| Msa0214320 | MtrunA17_Chr2g0315381 | 53.933 | 178 | 68 | 6 | 8 | 174 | 129 | 303 | 1.81e-54 | 175 |
| Msa0214320 | MtrunA17_Chr2g0315361 | 48.214 | 168 | 70 | 5 | 8 | 161 | 133 | 297 | 2.28e-42 | 144 |
| Msa0214320 | MtrunA17_Chr2g0315371 | 47.191 | 178 | 76 | 5 | 8 | 170 | 126 | 300 | 5.52e-42 | 142 |
| Msa0214320 | MtrunA17_Chr7g0244981 | 48.780 | 123 | 52 | 3 | 8 | 123 | 107 | 225 | 6.70e-32 | 116 |
| Msa0214320 | MtrunA17_Chr7g0244971 | 50.000 | 108 | 50 | 2 | 8 | 115 | 108 | 211 | 1.67e-31 | 115 |
| Msa0214320 | MtrunA17_Chr8g0350621 | 43.333 | 120 | 62 | 3 | 8 | 122 | 96 | 214 | 1.65e-28 | 106 |
| Msa0214320 | MtrunA17_Chr8g0334541 | 52.809 | 89 | 38 | 1 | 8 | 96 | 88 | 172 | 2.76e-26 | 101 |
| Msa0214320 | MtrunA17_Chr3g0128671 | 50.794 | 63 | 31 | 0 | 24 | 86 | 128 | 190 | 9.74e-19 | 81.6 |
| Msa0214320 | MtrunA17_Chr8g0387981 | 53.333 | 60 | 28 | 0 | 23 | 82 | 132 | 191 | 3.16e-18 | 80.9 |
| Msa0214320 | MtrunA17_Chr8g0350631 | 41.818 | 110 | 56 | 5 | 44 | 148 | 5 | 111 | 8.32e-18 | 76.3 |
| Msa0214320 | MtrunA17_Chr5g0428351 | 37.037 | 108 | 65 | 2 | 8 | 113 | 169 | 275 | 2.48e-17 | 77.8 |
| Msa0214320 | MtrunA17_Chr7g0275531 | 49.180 | 61 | 31 | 0 | 22 | 82 | 117 | 177 | 2.43e-16 | 75.1 |
| Msa0214320 | MtrunA17_Chr3g0126391 | 49.180 | 61 | 31 | 0 | 22 | 82 | 132 | 192 | 3.16e-16 | 75.1 |
| Msa0214320 | MtrunA17_Chr4g0051881 | 45.570 | 79 | 38 | 2 | 22 | 98 | 177 | 252 | 2.73e-15 | 72.4 |
| Msa0214320 | MtrunA17_Chr4g0042831 | 34.234 | 111 | 70 | 1 | 1 | 111 | 256 | 363 | 5.98e-15 | 71.6 |
| Msa0214320 | MtrunA17_Chr8g0347251 | 47.619 | 63 | 33 | 0 | 23 | 85 | 136 | 198 | 1.05e-14 | 70.9 |
| Msa0214320 | MtrunA17_Chr8g0383351 | 48.333 | 60 | 28 | 1 | 21 | 80 | 158 | 214 | 3.08e-14 | 68.6 |
| Msa0214320 | MtrunA17_Chr5g0443131 | 47.761 | 67 | 30 | 2 | 22 | 86 | 156 | 219 | 1.49e-13 | 67.4 |
| Msa0214320 | MtrunA17_Chr5g0418781 | 33.621 | 116 | 71 | 2 | 22 | 134 | 123 | 235 | 1.49e-13 | 67.0 |
| Msa0214320 | MtrunA17_Chr7g0270191 | 50.847 | 59 | 26 | 1 | 22 | 80 | 144 | 199 | 2.10e-13 | 66.6 |
| Msa0214320 | MtrunA17_Chr5g0418191 | 38.043 | 92 | 47 | 2 | 21 | 112 | 318 | 399 | 2.36e-13 | 67.4 |
| Msa0214320 | MtrunA17_Chr3g0129361 | 46.667 | 60 | 29 | 1 | 21 | 80 | 142 | 198 | 2.98e-13 | 65.5 |
| Msa0214320 | MtrunA17_Chr7g0263531 | 41.860 | 86 | 46 | 2 | 17 | 102 | 356 | 437 | 5.25e-13 | 66.2 |
| Msa0214320 | MtrunA17_Chr7g0224801 | 46.667 | 60 | 29 | 1 | 21 | 80 | 91 | 147 | 7.68e-13 | 63.5 |
| Msa0214320 | MtrunA17_Chr1g0194481 | 49.153 | 59 | 27 | 1 | 22 | 80 | 157 | 212 | 8.40e-13 | 65.5 |
| Msa0214320 | MtrunA17_Chr2g0333851 | 42.029 | 69 | 38 | 1 | 13 | 81 | 159 | 225 | 2.12e-12 | 64.3 |
| Msa0214320 | MtrunA17_Chr4g0068541 | 40.541 | 74 | 40 | 2 | 8 | 80 | 192 | 262 | 2.45e-12 | 64.3 |
| Msa0214320 | MtrunA17_Chr8g0335811 | 45.902 | 61 | 30 | 1 | 21 | 81 | 152 | 209 | 3.14e-12 | 62.8 |
| Msa0214320 | MtrunA17_Chr7g0218081 | 38.961 | 77 | 44 | 1 | 5 | 81 | 392 | 465 | 3.24e-12 | 63.9 |
| Msa0214320 | MtrunA17_Chr5g0401821 | 43.056 | 72 | 39 | 1 | 24 | 95 | 200 | 269 | 3.27e-12 | 63.2 |
| Msa0214320 | MtrunA17_Chr5g0431811 | 43.750 | 64 | 36 | 0 | 23 | 86 | 672 | 735 | 6.32e-12 | 63.5 |
| Msa0214320 | MtrunA17_Chr7g0248721 | 43.243 | 74 | 38 | 2 | 21 | 94 | 139 | 208 | 8.75e-12 | 61.6 |
| Msa0214320 | MtrunA17_Chr1g0150281 | 39.241 | 79 | 42 | 2 | 3 | 81 | 124 | 196 | 1.47e-11 | 61.6 |
| Msa0214320 | MtrunA17_Chr3g0129321 | 40.244 | 82 | 45 | 2 | 1 | 81 | 95 | 173 | 1.77e-11 | 60.5 |
| Msa0214320 | MtrunA17_Chr5g0445311 | 40.789 | 76 | 41 | 2 | 7 | 81 | 347 | 419 | 1.79e-11 | 62.0 |
| Msa0214320 | MtrunA17_Chr7g0238921 | 50.000 | 60 | 27 | 1 | 21 | 80 | 122 | 178 | 1.98e-11 | 61.2 |
| Msa0214320 | MtrunA17_Chr2g0294231 | 45.763 | 59 | 29 | 1 | 22 | 80 | 202 | 257 | 2.90e-11 | 61.2 |
| Msa0214320 | MtrunA17_Chr4g0071521 | 49.123 | 57 | 27 | 1 | 24 | 80 | 246 | 300 | 3.38e-11 | 60.8 |
| Msa0214320 | MtrunA17_Chr1g0147881 | 45.000 | 60 | 31 | 1 | 21 | 80 | 260 | 317 | 8.18e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214320 | AT5G22570.1 | 57.534 | 73 | 30 | 1 | 13 | 84 | 99 | 171 | 3.36e-24 | 96.3 |
| Msa0214320 | AT5G01900.1 | 54.545 | 66 | 30 | 0 | 18 | 83 | 105 | 170 | 7.62e-22 | 89.7 |
| Msa0214320 | AT1G66560.1 | 52.941 | 68 | 32 | 0 | 23 | 90 | 103 | 170 | 3.06e-21 | 87.8 |
| Msa0214320 | AT1G66600.1 | 55.556 | 63 | 28 | 0 | 22 | 84 | 102 | 164 | 1.48e-20 | 85.9 |
| Msa0214320 | AT1G66550.2 | 50.746 | 67 | 33 | 0 | 24 | 90 | 104 | 170 | 4.87e-20 | 84.7 |
| Msa0214320 | AT1G66550.1 | 50.746 | 67 | 33 | 0 | 24 | 90 | 109 | 175 | 5.63e-20 | 84.3 |
| Msa0214320 | AT3G56400.1 | 45.455 | 77 | 39 | 1 | 8 | 84 | 108 | 181 | 2.09e-19 | 83.6 |
| Msa0214320 | AT1G80590.1 | 52.459 | 61 | 29 | 0 | 24 | 84 | 86 | 146 | 5.31e-19 | 81.6 |
| Msa0214320 | AT5G24110.1 | 46.341 | 82 | 39 | 2 | 22 | 99 | 112 | 192 | 3.88e-17 | 77.8 |
| Msa0214320 | AT4G11070.2 | 33.071 | 127 | 71 | 4 | 23 | 136 | 109 | 234 | 2.51e-16 | 75.1 |
| Msa0214320 | AT4G11070.1 | 33.071 | 127 | 71 | 4 | 23 | 136 | 141 | 266 | 3.90e-16 | 75.1 |
| Msa0214320 | AT2G40750.1 | 42.500 | 80 | 43 | 1 | 3 | 82 | 135 | 211 | 3.23e-15 | 72.8 |
| Msa0214320 | AT2G40740.1 | 45.000 | 60 | 33 | 0 | 23 | 82 | 173 | 232 | 6.39e-15 | 71.2 |
| Msa0214320 | AT4G23810.1 | 43.284 | 67 | 38 | 0 | 23 | 89 | 158 | 224 | 6.77e-15 | 71.6 |
| Msa0214320 | AT2G40740.3 | 45.000 | 60 | 33 | 0 | 23 | 82 | 182 | 241 | 7.63e-15 | 71.2 |
| Msa0214320 | AT2G46400.1 | 45.902 | 61 | 33 | 0 | 22 | 82 | 103 | 163 | 1.38e-14 | 70.5 |
| Msa0214320 | AT1G64000.1 | 49.180 | 61 | 28 | 1 | 21 | 81 | 112 | 169 | 2.93e-14 | 68.2 |
| Msa0214320 | AT2G37260.1 | 40.659 | 91 | 43 | 2 | 22 | 112 | 348 | 427 | 3.88e-14 | 70.1 |
| Msa0214320 | AT2G37260.2 | 40.659 | 91 | 43 | 2 | 22 | 112 | 266 | 345 | 4.61e-14 | 69.3 |
| Msa0214320 | AT2G37260.3 | 40.659 | 91 | 43 | 2 | 22 | 112 | 268 | 347 | 4.70e-14 | 69.3 |
| Msa0214320 | AT2G03340.1 | 42.308 | 78 | 42 | 1 | 21 | 98 | 413 | 487 | 8.95e-14 | 68.9 |
| Msa0214320 | AT4G18170.1 | 50.000 | 60 | 27 | 1 | 22 | 81 | 171 | 227 | 3.22e-13 | 67.0 |
| Msa0214320 | AT5G41570.1 | 47.541 | 61 | 29 | 1 | 21 | 81 | 96 | 153 | 3.60e-13 | 64.7 |
| Msa0214320 | AT1G29860.1 | 50.000 | 60 | 27 | 1 | 22 | 81 | 135 | 191 | 3.83e-13 | 66.2 |
| Msa0214320 | AT1G69310.4 | 47.458 | 59 | 28 | 1 | 22 | 80 | 146 | 201 | 5.47e-13 | 65.9 |
| Msa0214320 | AT1G69310.2 | 47.458 | 59 | 28 | 1 | 22 | 80 | 146 | 201 | 5.47e-13 | 65.9 |
| Msa0214320 | AT1G69310.1 | 47.458 | 59 | 28 | 1 | 22 | 80 | 146 | 201 | 5.47e-13 | 65.9 |
| Msa0214320 | AT4G31800.2 | 43.478 | 69 | 37 | 1 | 13 | 81 | 101 | 167 | 7.66e-13 | 65.1 |
| Msa0214320 | AT2G46130.1 | 43.939 | 66 | 34 | 1 | 16 | 81 | 23 | 85 | 9.79e-13 | 62.0 |
| Msa0214320 | AT4G31800.1 | 43.478 | 69 | 37 | 1 | 13 | 81 | 166 | 232 | 1.26e-12 | 65.1 |
| Msa0214320 | AT4G39410.1 | 45.000 | 60 | 30 | 1 | 21 | 80 | 221 | 277 | 1.42e-12 | 65.1 |
| Msa0214320 | AT5G46350.1 | 48.333 | 60 | 28 | 1 | 22 | 81 | 182 | 238 | 1.86e-12 | 64.7 |
| Msa0214320 | AT1G13960.1 | 47.541 | 61 | 29 | 1 | 21 | 81 | 407 | 464 | 2.08e-12 | 65.1 |
| Msa0214320 | AT5G49520.1 | 47.458 | 59 | 28 | 1 | 22 | 80 | 220 | 275 | 2.22e-12 | 64.7 |
| Msa0214320 | AT2G44745.1 | 45.902 | 61 | 30 | 1 | 21 | 81 | 143 | 200 | 2.27e-12 | 63.5 |
| Msa0214320 | AT5G13080.1 | 47.541 | 61 | 29 | 1 | 21 | 81 | 65 | 122 | 2.94e-12 | 61.6 |
| Msa0214320 | AT1G13960.2 | 47.541 | 61 | 29 | 1 | 21 | 81 | 254 | 311 | 4.34e-12 | 63.9 |
| Msa0214320 | AT2G47260.1 | 43.662 | 71 | 37 | 1 | 22 | 92 | 173 | 240 | 4.49e-12 | 63.5 |
| Msa0214320 | AT2G25000.2 | 44.615 | 65 | 34 | 1 | 17 | 81 | 97 | 159 | 6.00e-12 | 62.4 |
| Msa0214320 | AT2G25000.4 | 44.615 | 65 | 34 | 1 | 17 | 81 | 97 | 159 | 6.00e-12 | 62.4 |
| Msa0214320 | AT2G25000.3 | 44.615 | 65 | 34 | 1 | 17 | 81 | 119 | 181 | 7.80e-12 | 62.4 |
| Msa0214320 | AT5G26170.1 | 40.984 | 61 | 33 | 1 | 21 | 81 | 111 | 168 | 9.61e-12 | 60.8 |
| Msa0214320 | AT2G25000.1 | 44.615 | 65 | 34 | 1 | 17 | 81 | 140 | 202 | 1.06e-11 | 62.4 |
| Msa0214320 | AT2G04880.2 | 47.541 | 61 | 29 | 1 | 21 | 81 | 281 | 338 | 1.82e-11 | 62.4 |
| Msa0214320 | AT2G04880.1 | 47.541 | 61 | 29 | 1 | 21 | 81 | 305 | 362 | 2.09e-11 | 62.0 |
| Msa0214320 | AT5G45260.1 | 44.828 | 58 | 32 | 0 | 24 | 81 | 1209 | 1266 | 2.12e-11 | 62.4 |
| Msa0214320 | AT2G30590.1 | 50.000 | 58 | 27 | 1 | 24 | 81 | 314 | 369 | 4.84e-11 | 60.8 |
| Msa0214320 | AT3G01080.2 | 38.961 | 77 | 44 | 1 | 5 | 81 | 326 | 399 | 5.04e-11 | 60.8 |
| Msa0214320 | AT3G01080.1 | 38.961 | 77 | 44 | 1 | 5 | 81 | 288 | 361 | 5.79e-11 | 60.8 |
Find 30 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTCAGATATCACATTAT+TGG | 0.160744 | 2_1:-58849426 | Msa0214320:CDS |
| TAGGGTATTGTTCTTTGATT+TGG | 0.255964 | 2_1:+58849357 | None:intergenic |
| GGTAATCTGATGTTATTAAT+TGG | 0.278984 | 2_1:+58849264 | None:intergenic |
| AACATAGAAGAAGTATTATT+AGG | 0.316397 | 2_1:+58849401 | None:intergenic |
| GGCTATGAATGGAGAAAGTA+TGG | 0.339396 | 2_1:-58849736 | Msa0214320:CDS |
| ATTATGATGGCCATAATATA+TGG | 0.342578 | 2_1:+58849466 | None:intergenic |
| TTATACAGAACCATATATTA+TGG | 0.345966 | 2_1:-58849476 | Msa0214320:CDS |
| TTCAATTTCATGATGGTTGT+GGG | 0.364141 | 2_1:-58849169 | Msa0214320:CDS |
| CTTCAATTTCATGATGGTTG+TGG | 0.366368 | 2_1:-58849170 | Msa0214320:CDS |
| GGTATTGTTCTTTGATTTGG+AGG | 0.380524 | 2_1:+58849360 | None:intergenic |
| TAAGATCAAAAGCACTTACT+TGG | 0.396882 | 2_1:-58849789 | Msa0214320:CDS |
| AAGATGAATTTGATTATTTG+AGG | 0.408137 | 2_1:-58849223 | Msa0214320:CDS |
| TAGGAATTAATCACTTCTAT+AGG | 0.410509 | 2_1:+58849308 | None:intergenic |
| GATGGTTGTGGGCGCAATCT+TGG | 0.419474 | 2_1:-58849158 | Msa0214320:CDS |
| GATATCTGAATTTAATAAAG+AGG | 0.448286 | 2_1:+58849436 | None:intergenic |
| CAATCTCTTCAATTTCATGA+TGG | 0.464117 | 2_1:-58849176 | Msa0214320:CDS |
| GTGACCAATGTGGTGATCAT+AGG | 0.466914 | 2_1:+58849289 | None:intergenic |
| TAATATATGGTTCTGTATAA+CGG | 0.500534 | 2_1:+58849479 | None:intergenic |
| TGTTTGAAGATGGCTATGAA+TGG | 0.519567 | 2_1:-58849747 | Msa0214320:CDS |
| TAATCAATGCAAAATACCTC+AGG | 0.531627 | 2_1:-58849702 | Msa0214320:intron |
| AAGATCAAAAGCACTTACTT+GGG | 0.571753 | 2_1:-58849788 | Msa0214320:CDS |
| AAAAGCACTTACTTGGGAGA+AGG | 0.572656 | 2_1:-58849782 | Msa0214320:CDS |
| ATATGGTTCTGTATAACGGA+GGG | 0.608401 | 2_1:+58849483 | None:intergenic |
| AATTCCTATGATCACCACAT+TGG | 0.609007 | 2_1:-58849293 | Msa0214320:CDS |
| ATGAAATTGAAGAGATTGTG+TGG | 0.612061 | 2_1:+58849181 | None:intergenic |
| CTTCATAATCACATGAGAGA+GGG | 0.620688 | 2_1:+58849243 | None:intergenic |
| ACATGTGCAGAGAATTCAAG+AGG | 0.632753 | 2_1:-58849507 | Msa0214320:CDS |
| TCTTCATAATCACATGAGAG+AGG | 0.633424 | 2_1:+58849242 | None:intergenic |
| TATATGGTTCTGTATAACGG+AGG | 0.665034 | 2_1:+58849482 | None:intergenic |
| TTAATTGGTTGTGACCAATG+TGG | 0.828115 | 2_1:+58849279 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTAAAACTATAGTAA+TGG | + | chr2_1:58849447-58849466 | None:intergenic | 10.0% |
| !!! | TTATTTTAAAACTATAGTAA+TGG | + | chr2_1:58849447-58849466 | None:intergenic | 10.0% |
| !! | TGAAAAAGAAAAAAATAGTT+GGG | - | chr2_1:58849388-58849407 | Msa0214320:intron | 15.0% |
| !! | ATTACATCATAGTTATAAAA+AGG | + | chr2_1:58849506-58849525 | None:intergenic | 15.0% |
| !! | CAAAGAAATATGATATTTAT+TGG | - | chr2_1:58849580-58849599 | Msa0214320:intron | 15.0% |
| !! | TGAAAAAGAAAAAAATAGTT+GGG | - | chr2_1:58849388-58849407 | Msa0214320:intron | 15.0% |
| !! | ATTACATCATAGTTATAAAA+AGG | + | chr2_1:58849506-58849525 | None:intergenic | 15.0% |
| !! | CAAAGAAATATGATATTTAT+TGG | - | chr2_1:58849580-58849599 | Msa0214320:intron | 15.0% |
| !!! | AATTGGACATTTATTTTAGT+CGG | + | chr2_1:58849162-58849181 | None:intergenic | 20.0% |
| !! | GTGAAAAAGAAAAAAATAGT+TGG | - | chr2_1:58849387-58849406 | Msa0214320:intron | 20.0% |
| !!! | TCTCCATTTTCTAAAATAAA+TGG | - | chr2_1:58849415-58849434 | Msa0214320:CDS | 20.0% |
| !!! | CTTCCATTTATTTTAGAAAA+TGG | + | chr2_1:58849421-58849440 | None:intergenic | 20.0% |
| !! | CAATATATCATTCATATCAT+AGG | - | chr2_1:58849830-58849849 | Msa0214320:intron | 20.0% |
| !!! | TAATATATGGTTCTGTATAA+CGG | + | chr2_1:58849934-58849953 | None:intergenic | 20.0% |
| !! | TTATACAGAACCATATATTA+TGG | - | chr2_1:58849934-58849953 | Msa0214320:intron | 20.0% |
| !! | GATATCTGAATTTAATAAAG+AGG | + | chr2_1:58849977-58849996 | None:intergenic | 20.0% |
| !! | AAATTCAGATATCACATTAT+TGG | - | chr2_1:58849984-58850003 | Msa0214320:intron | 20.0% |
| !!! | AACATAGAAGAAGTATTATT+AGG | + | chr2_1:58850012-58850031 | None:intergenic | 20.0% |
| !! | AAGATGAATTTGATTATTTG+AGG | - | chr2_1:58850187-58850206 | Msa0214320:intron | 20.0% |
| !!! | AATTGGACATTTATTTTAGT+CGG | + | chr2_1:58849162-58849181 | None:intergenic | 20.0% |
| !! | GTGAAAAAGAAAAAAATAGT+TGG | - | chr2_1:58849387-58849406 | Msa0214320:intron | 20.0% |
| !!! | TCTCCATTTTCTAAAATAAA+TGG | - | chr2_1:58849415-58849434 | Msa0214320:CDS | 20.0% |
| !!! | CTTCCATTTATTTTAGAAAA+TGG | + | chr2_1:58849421-58849440 | None:intergenic | 20.0% |
| !! | CAATATATCATTCATATCAT+AGG | - | chr2_1:58849830-58849849 | Msa0214320:intron | 20.0% |
| !!! | TAATATATGGTTCTGTATAA+CGG | + | chr2_1:58849934-58849953 | None:intergenic | 20.0% |
| !! | TTATACAGAACCATATATTA+TGG | - | chr2_1:58849934-58849953 | Msa0214320:intron | 20.0% |
| !! | GATATCTGAATTTAATAAAG+AGG | + | chr2_1:58849977-58849996 | None:intergenic | 20.0% |
| !! | AAATTCAGATATCACATTAT+TGG | - | chr2_1:58849984-58850003 | Msa0214320:intron | 20.0% |
| !!! | AACATAGAAGAAGTATTATT+AGG | + | chr2_1:58850012-58850031 | None:intergenic | 20.0% |
| !! | AAGATGAATTTGATTATTTG+AGG | - | chr2_1:58850187-58850206 | Msa0214320:intron | 20.0% |
| ! | AAATGTCCAATTCAAAAACA+TGG | - | chr2_1:58849170-58849189 | Msa0214320:CDS | 25.0% |
| ! | CCACAATAGACTTTAATTAA+CGG | - | chr2_1:58849360-58849379 | Msa0214320:CDS | 25.0% |
| ! | CACAATAGACTTTAATTAAC+GGG | - | chr2_1:58849361-58849380 | Msa0214320:CDS | 25.0% |
| ! | ACAATAGACTTTAATTAACG+GGG | - | chr2_1:58849362-58849381 | Msa0214320:CDS | 25.0% |
| ! | ATACGATATAAATGCACAAT+AGG | - | chr2_1:58849469-58849488 | Msa0214320:CDS | 25.0% |
| ! | ATTGAAGATATATATACCTG+AGG | + | chr2_1:58849727-58849746 | None:intergenic | 25.0% |
| ! | ATTATGATGGCCATAATATA+TGG | + | chr2_1:58849947-58849966 | None:intergenic | 25.0% |
| ! | TTGTGGATGATAAAAATGTA+GGG | + | chr2_1:58850074-58850093 | None:intergenic | 25.0% |
| ! | TTTGTGGATGATAAAAATGT+AGG | + | chr2_1:58850075-58850094 | None:intergenic | 25.0% |
| !! | ATTTTTATCATCCACAAAAC+TGG | - | chr2_1:58850077-58850096 | Msa0214320:intron | 25.0% |
| ! | TAGGAATTAATCACTTCTAT+AGG | + | chr2_1:58850105-58850124 | None:intergenic | 25.0% |
| ! | GGTAATCTGATGTTATTAAT+TGG | + | chr2_1:58850149-58850168 | None:intergenic | 25.0% |
| ! | AAATGTCCAATTCAAAAACA+TGG | - | chr2_1:58849170-58849189 | Msa0214320:CDS | 25.0% |
| ! | CCACAATAGACTTTAATTAA+CGG | - | chr2_1:58849360-58849379 | Msa0214320:CDS | 25.0% |
| ! | CACAATAGACTTTAATTAAC+GGG | - | chr2_1:58849361-58849380 | Msa0214320:CDS | 25.0% |
| ! | ACAATAGACTTTAATTAACG+GGG | - | chr2_1:58849362-58849381 | Msa0214320:CDS | 25.0% |
| ! | ATACGATATAAATGCACAAT+AGG | - | chr2_1:58849469-58849488 | Msa0214320:CDS | 25.0% |
| ! | ATTGAAGATATATATACCTG+AGG | + | chr2_1:58849727-58849746 | None:intergenic | 25.0% |
| ! | ATTATGATGGCCATAATATA+TGG | + | chr2_1:58849947-58849966 | None:intergenic | 25.0% |
| ! | TTGTGGATGATAAAAATGTA+GGG | + | chr2_1:58850074-58850093 | None:intergenic | 25.0% |
| ! | TTTGTGGATGATAAAAATGT+AGG | + | chr2_1:58850075-58850094 | None:intergenic | 25.0% |
| !! | ATTTTTATCATCCACAAAAC+TGG | - | chr2_1:58850077-58850096 | Msa0214320:intron | 25.0% |
| ! | TAGGAATTAATCACTTCTAT+AGG | + | chr2_1:58850105-58850124 | None:intergenic | 25.0% |
| ! | GGTAATCTGATGTTATTAAT+TGG | + | chr2_1:58850149-58850168 | None:intergenic | 25.0% |
| AATTCAAAAACATGGTCCTT+CGG | - | chr2_1:58849178-58849197 | Msa0214320:CDS | 30.0% | |
| AGACGTACACATAAAACTTT+CGG | + | chr2_1:58849205-58849224 | None:intergenic | 30.0% | |
| !! | AAAGTTTTATGTGTACGTCT+TGG | - | chr2_1:58849205-58849224 | Msa0214320:CDS | 30.0% |
| CCGTTAATTAAAGTCTATTG+TGG | + | chr2_1:58849363-58849382 | None:intergenic | 30.0% | |
| !! | TAAGATCAAAAGCACTTACT+TGG | - | chr2_1:58849621-58849640 | Msa0214320:intron | 30.0% |
| !! | AAGATCAAAAGCACTTACTT+GGG | - | chr2_1:58849622-58849641 | Msa0214320:intron | 30.0% |
| !! | AGCTCAATTTTGTTTGAAGA+TGG | - | chr2_1:58849653-58849672 | Msa0214320:intron | 30.0% |
| TAATCAATGCAAAATACCTC+AGG | - | chr2_1:58849708-58849727 | Msa0214320:CDS | 30.0% | |
| ! | AAGAGGTTTTGCAATTATGA+TGG | + | chr2_1:58849960-58849979 | None:intergenic | 30.0% |
| !! | TAGGGTATTGTTCTTTGATT+TGG | + | chr2_1:58850056-58850075 | None:intergenic | 30.0% |
| ATGAAATTGAAGAGATTGTG+TGG | + | chr2_1:58850232-58850251 | None:intergenic | 30.0% | |
| CAATCTCTTCAATTTCATGA+TGG | - | chr2_1:58850234-58850253 | Msa0214320:intron | 30.0% | |
| TTCAATTTCATGATGGTTGT+GGG | - | chr2_1:58850241-58850260 | Msa0214320:intron | 30.0% | |
| AATTCAAAAACATGGTCCTT+CGG | - | chr2_1:58849178-58849197 | Msa0214320:CDS | 30.0% | |
| AGACGTACACATAAAACTTT+CGG | + | chr2_1:58849205-58849224 | None:intergenic | 30.0% | |
| !! | AAAGTTTTATGTGTACGTCT+TGG | - | chr2_1:58849205-58849224 | Msa0214320:CDS | 30.0% |
| CCGTTAATTAAAGTCTATTG+TGG | + | chr2_1:58849363-58849382 | None:intergenic | 30.0% | |
| !! | TAAGATCAAAAGCACTTACT+TGG | - | chr2_1:58849621-58849640 | Msa0214320:intron | 30.0% |
| !! | AAGATCAAAAGCACTTACTT+GGG | - | chr2_1:58849622-58849641 | Msa0214320:intron | 30.0% |
| !! | AGCTCAATTTTGTTTGAAGA+TGG | - | chr2_1:58849653-58849672 | Msa0214320:intron | 30.0% |
| TAATCAATGCAAAATACCTC+AGG | - | chr2_1:58849708-58849727 | Msa0214320:CDS | 30.0% | |
| ! | AAGAGGTTTTGCAATTATGA+TGG | + | chr2_1:58849960-58849979 | None:intergenic | 30.0% |
| !! | TAGGGTATTGTTCTTTGATT+TGG | + | chr2_1:58850056-58850075 | None:intergenic | 30.0% |
| ATGAAATTGAAGAGATTGTG+TGG | + | chr2_1:58850232-58850251 | None:intergenic | 30.0% | |
| CAATCTCTTCAATTTCATGA+TGG | - | chr2_1:58850234-58850253 | Msa0214320:intron | 30.0% | |
| TTCAATTTCATGATGGTTGT+GGG | - | chr2_1:58850241-58850260 | Msa0214320:intron | 30.0% | |
| !! | GAAGGACCATGTTTTTGAAT+TGG | + | chr2_1:58849179-58849198 | None:intergenic | 35.0% |
| GACGTACACATAAAACTTTC+GGG | + | chr2_1:58849204-58849223 | None:intergenic | 35.0% | |
| TGTTTGAAGATGGCTATGAA+TGG | - | chr2_1:58849663-58849682 | Msa0214320:intron | 35.0% | |
| ! | ATATGGTTCTGTATAACGGA+GGG | + | chr2_1:58849930-58849949 | None:intergenic | 35.0% |
| ! | TATATGGTTCTGTATAACGG+AGG | + | chr2_1:58849931-58849950 | None:intergenic | 35.0% |
| !! | GGTATTGTTCTTTGATTTGG+AGG | + | chr2_1:58850053-58850072 | None:intergenic | 35.0% |
| AATTCCTATGATCACCACAT+TGG | - | chr2_1:58850117-58850136 | Msa0214320:intron | 35.0% | |
| TTAATTGGTTGTGACCAATG+TGG | + | chr2_1:58850134-58850153 | None:intergenic | 35.0% | |
| CTTCATAATCACATGAGAGA+GGG | + | chr2_1:58850170-58850189 | None:intergenic | 35.0% | |
| TCTTCATAATCACATGAGAG+AGG | + | chr2_1:58850171-58850190 | None:intergenic | 35.0% | |
| CTTCAATTTCATGATGGTTG+TGG | - | chr2_1:58850240-58850259 | Msa0214320:intron | 35.0% | |
| !! | GAAGGACCATGTTTTTGAAT+TGG | + | chr2_1:58849179-58849198 | None:intergenic | 35.0% |
| GACGTACACATAAAACTTTC+GGG | + | chr2_1:58849204-58849223 | None:intergenic | 35.0% | |
| TGTTTGAAGATGGCTATGAA+TGG | - | chr2_1:58849663-58849682 | Msa0214320:intron | 35.0% | |
| ! | ATATGGTTCTGTATAACGGA+GGG | + | chr2_1:58849930-58849949 | None:intergenic | 35.0% |
| ! | TATATGGTTCTGTATAACGG+AGG | + | chr2_1:58849931-58849950 | None:intergenic | 35.0% |
| !! | GGTATTGTTCTTTGATTTGG+AGG | + | chr2_1:58850053-58850072 | None:intergenic | 35.0% |
| AATTCCTATGATCACCACAT+TGG | - | chr2_1:58850117-58850136 | Msa0214320:intron | 35.0% | |
| TTAATTGGTTGTGACCAATG+TGG | + | chr2_1:58850134-58850153 | None:intergenic | 35.0% | |
| CTTCATAATCACATGAGAGA+GGG | + | chr2_1:58850170-58850189 | None:intergenic | 35.0% | |
| TCTTCATAATCACATGAGAG+AGG | + | chr2_1:58850171-58850190 | None:intergenic | 35.0% | |
| CTTCAATTTCATGATGGTTG+TGG | - | chr2_1:58850240-58850259 | Msa0214320:intron | 35.0% | |
| TTATGTGTACGTCTTGGCAT+AGG | - | chr2_1:58849211-58849230 | Msa0214320:CDS | 40.0% | |
| !! | AAAAGCACTTACTTGGGAGA+AGG | - | chr2_1:58849628-58849647 | Msa0214320:intron | 40.0% |
| GGCTATGAATGGAGAAAGTA+TGG | - | chr2_1:58849674-58849693 | Msa0214320:intron | 40.0% | |
| ACATGTGCAGAGAATTCAAG+AGG | - | chr2_1:58849903-58849922 | Msa0214320:intron | 40.0% | |
| ! | TTCTATAGGCTCCAGTTTTG+TGG | + | chr2_1:58850091-58850110 | None:intergenic | 40.0% |
| TTATGTGTACGTCTTGGCAT+AGG | - | chr2_1:58849211-58849230 | Msa0214320:CDS | 40.0% | |
| !! | AAAAGCACTTACTTGGGAGA+AGG | - | chr2_1:58849628-58849647 | Msa0214320:intron | 40.0% |
| GGCTATGAATGGAGAAAGTA+TGG | - | chr2_1:58849674-58849693 | Msa0214320:intron | 40.0% | |
| ACATGTGCAGAGAATTCAAG+AGG | - | chr2_1:58849903-58849922 | Msa0214320:intron | 40.0% | |
| ! | TTCTATAGGCTCCAGTTTTG+TGG | + | chr2_1:58850091-58850110 | None:intergenic | 40.0% |
| ACATAAAACTTTCGGGCCGA+AGG | + | chr2_1:58849197-58849216 | None:intergenic | 45.0% | |
| GTGACCAATGTGGTGATCAT+AGG | + | chr2_1:58850124-58850143 | None:intergenic | 45.0% | |
| ACATAAAACTTTCGGGCCGA+AGG | + | chr2_1:58849197-58849216 | None:intergenic | 45.0% | |
| GTGACCAATGTGGTGATCAT+AGG | + | chr2_1:58850124-58850143 | None:intergenic | 45.0% | |
| CGTCTTGGCATAGGATGTGT+CGG | - | chr2_1:58849220-58849239 | Msa0214320:CDS | 50.0% | |
| GGAGGCTGTCATTGAAGCTA+AGG | + | chr2_1:58850035-58850054 | None:intergenic | 50.0% | |
| CGTCTTGGCATAGGATGTGT+CGG | - | chr2_1:58849220-58849239 | Msa0214320:CDS | 50.0% | |
| GGAGGCTGTCATTGAAGCTA+AGG | + | chr2_1:58850035-58850054 | None:intergenic | 50.0% | |
| GATGGTTGTGGGCGCAATCT+TGG | - | chr2_1:58850252-58850271 | Msa0214320:intron | 55.0% | |
| GATGGTTGTGGGCGCAATCT+TGG | - | chr2_1:58850252-58850271 | Msa0214320:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 58849148 | 58850284 | 58849148 | ID=Msa0214320;Name=Msa0214320 |
| chr2_1 | mRNA | 58849148 | 58850284 | 58849148 | ID=Msa0214320-mRNA-1;Parent=Msa0214320;Name=Msa0214320-mRNA-1;_AED=0.15;_eAED=0.19;_QI=0|0|0|0.75|0.33|0.25|4|0|184 |
| chr2_1 | exon | 58850281 | 58850284 | 58850281 | ID=Msa0214320-mRNA-1:exon:16147;Parent=Msa0214320-mRNA-1 |
| chr2_1 | exon | 58849703 | 58849826 | 58849703 | ID=Msa0214320-mRNA-1:exon:16146;Parent=Msa0214320-mRNA-1 |
| chr2_1 | exon | 58849404 | 58849580 | 58849404 | ID=Msa0214320-mRNA-1:exon:16145;Parent=Msa0214320-mRNA-1 |
| chr2_1 | exon | 58849148 | 58849394 | 58849148 | ID=Msa0214320-mRNA-1:exon:16144;Parent=Msa0214320-mRNA-1 |
| chr2_1 | CDS | 58850281 | 58850284 | 58850281 | ID=Msa0214320-mRNA-1:cds;Parent=Msa0214320-mRNA-1 |
| chr2_1 | CDS | 58849703 | 58849826 | 58849703 | ID=Msa0214320-mRNA-1:cds;Parent=Msa0214320-mRNA-1 |
| chr2_1 | CDS | 58849404 | 58849580 | 58849404 | ID=Msa0214320-mRNA-1:cds;Parent=Msa0214320-mRNA-1 |
| chr2_1 | CDS | 58849148 | 58849394 | 58849148 | ID=Msa0214320-mRNA-1:cds;Parent=Msa0214320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
