Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214410 | BAE71298.1 | 94.253 | 174 | 10 | 0 | 1 | 174 | 1 | 174 | 8.33e-121 | 348 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214410 | sp|Q8LGI8|NAA20_ARATH | 90.805 | 174 | 16 | 0 | 1 | 174 | 1 | 174 | 1.24e-119 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214410 | Q2PEQ4 | 94.253 | 174 | 10 | 0 | 1 | 174 | 1 | 174 | 3.98e-121 | 348 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0214410 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214410 | MtrunA17_Chr7g0275421 | 93.919 | 148 | 9 | 0 | 27 | 174 | 12 | 159 | 2.68e-103 | 293 |
| Msa0214410 | MtrunA17_Chr3g0090311 | 35.185 | 162 | 100 | 2 | 1 | 161 | 1 | 158 | 1.13e-28 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214410 | AT1G03150.1 | 90.805 | 174 | 16 | 0 | 1 | 174 | 1 | 174 | 1.26e-120 | 338 |
| Msa0214410 | AT5G13780.1 | 37.179 | 156 | 97 | 1 | 1 | 155 | 1 | 156 | 1.52e-28 | 105 |
Find 42 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAGTGCTACGTTATTATTC+TGG | 0.239936 | 2_1:+58954192 | Msa0214410:CDS |
| GTAACCCATGATTCGATTTC+CGG | 0.242250 | 2_1:-58953451 | None:intergenic |
| TGATTCGATTTCCGGGGCCT+TGG | 0.300853 | 2_1:-58953443 | None:intergenic |
| ACGTATTGTCGTCATCTCTT+AGG | 0.330505 | 2_1:-58953201 | None:intergenic |
| GTCAGGCCATCTTGCTAAAT+AGG | 0.361124 | 2_1:-58953406 | None:intergenic |
| TTCCGGGGCCTTGGGCGACT+TGG | 0.382516 | 2_1:-58953434 | None:intergenic |
| GATTCGATTTCCGGGGCCTT+GGG | 0.386942 | 2_1:-58953442 | None:intergenic |
| TAACCCATGATTCGATTTCC+GGG | 0.408074 | 2_1:-58953450 | None:intergenic |
| TAGTCGTATTCTAATTCATC+AGG | 0.411545 | 2_1:-58954402 | None:intergenic |
| TTCTGGGGAAGAAGATGGAT+TGG | 0.420903 | 2_1:+58954209 | Msa0214410:CDS |
| TGCTTTGGCAAATTCTTTGA+AGG | 0.422503 | 2_1:+58953177 | None:intergenic |
| TATTATTCTGGGGAAGAAGA+TGG | 0.447212 | 2_1:+58954204 | Msa0214410:CDS |
| TGCTAAATAGGTCATGTAGA+AGG | 0.454880 | 2_1:-58953394 | None:intergenic |
| AGTCCGTCAGCCCTCTTAAA+CGG | 0.466234 | 2_1:+58954370 | Msa0214410:CDS |
| GAGTGCTACGTTATTATTCT+GGG | 0.470429 | 2_1:+58954193 | Msa0214410:CDS |
| TCTGGGGAAGAAGATGGATT+GGG | 0.475034 | 2_1:+58954210 | Msa0214410:CDS |
| TTCCAAGTCGCCCAAGGCCC+CGG | 0.485170 | 2_1:+58953432 | Msa0214410:CDS |
| TGACATTTGTAAAACGAAGA+AGG | 0.486544 | 2_1:-58953241 | None:intergenic |
| GGAGTGACATGCCGTTTAAG+AGG | 0.496131 | 2_1:-58954381 | None:intergenic |
| AACTGTTGCCTGCGATACTC+CGG | 0.498445 | 2_1:-58953614 | None:intergenic |
| TAGAGGGGCAAGGAGAATCT+TGG | 0.499019 | 2_1:+58953561 | Msa0214410:CDS |
| TGGGCGACTTGGAAATAGTC+AGG | 0.503036 | 2_1:-58953423 | None:intergenic |
| AACTGCAGTAACCGTTGCTC+CGG | 0.506627 | 2_1:+58953595 | Msa0214410:CDS |
| AGCCATCAAGATGTATGAAA+AGG | 0.514376 | 2_1:+58953802 | Msa0214410:CDS |
| AGGCCCCGGAAATCGAATCA+TGG | 0.515528 | 2_1:+58953446 | Msa0214410:CDS |
| CCGTTGCTCCGGAGTATCGC+AGG | 0.523952 | 2_1:+58953606 | Msa0214410:CDS |
| AACGTGAGTACGTACAGTTT+CGG | 0.540046 | 2_1:-58953279 | None:intergenic |
| ACATGACCTATTTAGCAAGA+TGG | 0.544945 | 2_1:+58953400 | Msa0214410:CDS |
| GCAGTTATGGGTAAAGTAGA+GGG | 0.544970 | 2_1:+58953545 | Msa0214410:intron |
| GGCCCCGGAAATCGAATCAT+GGG | 0.555258 | 2_1:+58953447 | Msa0214410:CDS |
| GACTATTTCCAAGTCGCCCA+AGG | 0.565815 | 2_1:+58953426 | Msa0214410:CDS |
| ATGGGTAAAGTAGAGGGGCA+AGG | 0.572891 | 2_1:+58953551 | Msa0214410:CDS |
| TGCAGTTATGGGTAAAGTAG+AGG | 0.579669 | 2_1:+58953544 | Msa0214410:intron |
| GAGTGACATGCCGTTTAAGA+GGG | 0.585815 | 2_1:-58954380 | None:intergenic |
| AATAATAACGTAGCACTCGT+CGG | 0.603392 | 2_1:-58954188 | None:intergenic |
| AACCCATGATTCGATTTCCG+GGG | 0.619081 | 2_1:-58953449 | None:intergenic |
| ATGCCGTTTAAGAGGGCTGA+CGG | 0.621153 | 2_1:-58954373 | None:intergenic |
| CCTGCGATACTCCGGAGCAA+CGG | 0.637174 | 2_1:-58953606 | None:intergenic |
| GGGCAAGGAGAATCTTGGCA+TGG | 0.661266 | 2_1:+58953566 | Msa0214410:CDS |
| AGTGCTACGTTATTATTCTG+GGG | 0.665106 | 2_1:+58954194 | Msa0214410:CDS |
| CAGTTATGGGTAAAGTAGAG+GGG | 0.668038 | 2_1:+58953546 | Msa0214410:intron |
| AAGAGATGACGACAATACGT+AGG | 0.724152 | 2_1:+58953204 | Msa0214410:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACCCTATTAGAATTT+GGG | - | chr2_1:58953980-58953999 | None:intergenic | 20.0% |
| !! | TAAAAAACCCTATTAGAATT+TGG | - | chr2_1:58953981-58954000 | None:intergenic | 20.0% |
| !! | AGATTACTTATCAATAGTTT+AGG | + | chr2_1:58954013-58954032 | Msa0214410:intron | 20.0% |
| !! | TTAATGTAGAACTTAATCAT+TGG | + | chr2_1:58954039-58954058 | Msa0214410:intron | 20.0% |
| !!! | GATATGTTTTCTTTTAGATT+AGG | + | chr2_1:58954088-58954107 | Msa0214410:intron | 20.0% |
| !! | AAAAAACCCTATTAGAATTT+GGG | - | chr2_1:58953980-58953999 | None:intergenic | 20.0% |
| !! | TAAAAAACCCTATTAGAATT+TGG | - | chr2_1:58953981-58954000 | None:intergenic | 20.0% |
| !! | AGATTACTTATCAATAGTTT+AGG | + | chr2_1:58954013-58954032 | Msa0214410:intron | 20.0% |
| !! | TTAATGTAGAACTTAATCAT+TGG | + | chr2_1:58954039-58954058 | Msa0214410:intron | 20.0% |
| !!! | GATATGTTTTCTTTTAGATT+AGG | + | chr2_1:58954088-58954107 | Msa0214410:intron | 20.0% |
| ! | TTGTGTAAAAGACTATACTA+TGG | + | chr2_1:58953498-58953517 | Msa0214410:intron | 25.0% |
| ! | TGTGTAAAAGACTATACTAT+GGG | + | chr2_1:58953499-58953518 | Msa0214410:intron | 25.0% |
| ! | AATATCATTCATGCAGTTAT+GGG | + | chr2_1:58953533-58953552 | Msa0214410:intron | 25.0% |
| ! | TAGAACTTAATCATTGGATA+TGG | + | chr2_1:58954045-58954064 | Msa0214410:intron | 25.0% |
| ! | ACAGCAAATAAATAGTGATA+CGG | - | chr2_1:58954293-58954312 | None:intergenic | 25.0% |
| ! | TCCTCATATCTGAAAATAAA+GGG | - | chr2_1:58954323-58954342 | None:intergenic | 25.0% |
| ! | TTCCTCATATCTGAAAATAA+AGG | - | chr2_1:58954324-58954343 | None:intergenic | 25.0% |
| !!! | TTTATTTTCAGATATGAGGA+AGG | + | chr2_1:58954323-58954342 | Msa0214410:intron | 25.0% |
| ! | TTGTGTAAAAGACTATACTA+TGG | + | chr2_1:58953498-58953517 | Msa0214410:intron | 25.0% |
| ! | TGTGTAAAAGACTATACTAT+GGG | + | chr2_1:58953499-58953518 | Msa0214410:intron | 25.0% |
| ! | AATATCATTCATGCAGTTAT+GGG | + | chr2_1:58953533-58953552 | Msa0214410:intron | 25.0% |
| ! | TAGAACTTAATCATTGGATA+TGG | + | chr2_1:58954045-58954064 | Msa0214410:intron | 25.0% |
| ! | ACAGCAAATAAATAGTGATA+CGG | - | chr2_1:58954293-58954312 | None:intergenic | 25.0% |
| ! | TCCTCATATCTGAAAATAAA+GGG | - | chr2_1:58954323-58954342 | None:intergenic | 25.0% |
| ! | TTCCTCATATCTGAAAATAA+AGG | - | chr2_1:58954324-58954343 | None:intergenic | 25.0% |
| !!! | TTTATTTTCAGATATGAGGA+AGG | + | chr2_1:58954323-58954342 | Msa0214410:intron | 25.0% |
| TGACATTTGTAAAACGAAGA+AGG | - | chr2_1:58953244-58953263 | None:intergenic | 30.0% | |
| !! | CATAAAGTGAATTGAGTTGA+GGG | - | chr2_1:58953327-58953346 | None:intergenic | 30.0% |
| CATAACTGCATGAATGATAT+TGG | - | chr2_1:58953534-58953553 | None:intergenic | 30.0% | |
| CAATATCATTCATGCAGTTA+TGG | + | chr2_1:58953532-58953551 | Msa0214410:intron | 30.0% | |
| ! | TACCTTTTCATACATCTTGA+TGG | - | chr2_1:58953807-58953826 | None:intergenic | 30.0% |
| ! | TACACAAGGTTGCTTTAAAT+CGG | + | chr2_1:58953885-58953904 | Msa0214410:intron | 30.0% |
| ATCCAACCCAAATTCTAATA+GGG | + | chr2_1:58953971-58953990 | Msa0214410:intron | 30.0% | |
| ACATATCCTAATCCAACAAA+TGG | - | chr2_1:58954075-58954094 | None:intergenic | 30.0% | |
| CAAGCTATAAGATGTCAAAA+AGG | - | chr2_1:58954155-58954174 | None:intergenic | 30.0% | |
| ! | CTTTTTGACATCTTATAGCT+TGG | + | chr2_1:58954153-58954172 | Msa0214410:intron | 30.0% |
| !!! | TCCCTTTATTTTCAGATATG+AGG | + | chr2_1:58954319-58954338 | Msa0214410:intron | 30.0% |
| TAGTCGTATTCTAATTCATC+AGG | - | chr2_1:58954405-58954424 | None:intergenic | 30.0% | |
| TGACATTTGTAAAACGAAGA+AGG | - | chr2_1:58953244-58953263 | None:intergenic | 30.0% | |
| !! | CATAAAGTGAATTGAGTTGA+GGG | - | chr2_1:58953327-58953346 | None:intergenic | 30.0% |
| CATAACTGCATGAATGATAT+TGG | - | chr2_1:58953534-58953553 | None:intergenic | 30.0% | |
| CAATATCATTCATGCAGTTA+TGG | + | chr2_1:58953532-58953551 | Msa0214410:intron | 30.0% | |
| ! | TACCTTTTCATACATCTTGA+TGG | - | chr2_1:58953807-58953826 | None:intergenic | 30.0% |
| ! | TACACAAGGTTGCTTTAAAT+CGG | + | chr2_1:58953885-58953904 | Msa0214410:intron | 30.0% |
| ATCCAACCCAAATTCTAATA+GGG | + | chr2_1:58953971-58953990 | Msa0214410:intron | 30.0% | |
| ACATATCCTAATCCAACAAA+TGG | - | chr2_1:58954075-58954094 | None:intergenic | 30.0% | |
| CAAGCTATAAGATGTCAAAA+AGG | - | chr2_1:58954155-58954174 | None:intergenic | 30.0% | |
| ! | CTTTTTGACATCTTATAGCT+TGG | + | chr2_1:58954153-58954172 | Msa0214410:intron | 30.0% |
| !!! | TCCCTTTATTTTCAGATATG+AGG | + | chr2_1:58954319-58954338 | Msa0214410:intron | 30.0% |
| TAGTCGTATTCTAATTCATC+AGG | - | chr2_1:58954405-58954424 | None:intergenic | 30.0% | |
| !! | TGAATTGAGTTGAGGGTTTA+GGG | - | chr2_1:58953320-58953339 | None:intergenic | 35.0% |
| ! | GCATAAAGTGAATTGAGTTG+AGG | - | chr2_1:58953328-58953347 | None:intergenic | 35.0% |
| TGCTAAATAGGTCATGTAGA+AGG | - | chr2_1:58953397-58953416 | None:intergenic | 35.0% | |
| ACATGACCTATTTAGCAAGA+TGG | + | chr2_1:58953400-58953419 | Msa0214410:CDS | 35.0% | |
| !! | TTTTCATACATCTTGATGGC+TGG | - | chr2_1:58953803-58953822 | None:intergenic | 35.0% |
| AGCCATCAAGATGTATGAAA+AGG | + | chr2_1:58953802-58953821 | Msa0214410:CDS | 35.0% | |
| TGTGGAAGGTTTAATCTGAA+AGG | - | chr2_1:58953846-58953865 | None:intergenic | 35.0% | |
| !! | ACCTTACAAGCTGATTTTGT+AGG | + | chr2_1:58953938-58953957 | Msa0214410:intron | 35.0% |
| TCCTACAAAATCAGCTTGTA+AGG | - | chr2_1:58953942-58953961 | None:intergenic | 35.0% | |
| GATCCAACCCAAATTCTAAT+AGG | + | chr2_1:58953970-58953989 | Msa0214410:intron | 35.0% | |
| AACCCTATTAGAATTTGGGT+TGG | - | chr2_1:58953976-58953995 | None:intergenic | 35.0% | |
| AATAATAACGTAGCACTCGT+CGG | - | chr2_1:58954191-58954210 | None:intergenic | 35.0% | |
| GAGTGCTACGTTATTATTCT+GGG | + | chr2_1:58954193-58954212 | Msa0214410:CDS | 35.0% | |
| AGTGCTACGTTATTATTCTG+GGG | + | chr2_1:58954194-58954213 | Msa0214410:CDS | 35.0% | |
| ! | TATTATTCTGGGGAAGAAGA+TGG | + | chr2_1:58954204-58954223 | Msa0214410:CDS | 35.0% |
| !! | TGAATTGAGTTGAGGGTTTA+GGG | - | chr2_1:58953320-58953339 | None:intergenic | 35.0% |
| ! | GCATAAAGTGAATTGAGTTG+AGG | - | chr2_1:58953328-58953347 | None:intergenic | 35.0% |
| TGCTAAATAGGTCATGTAGA+AGG | - | chr2_1:58953397-58953416 | None:intergenic | 35.0% | |
| ACATGACCTATTTAGCAAGA+TGG | + | chr2_1:58953400-58953419 | Msa0214410:CDS | 35.0% | |
| !! | TTTTCATACATCTTGATGGC+TGG | - | chr2_1:58953803-58953822 | None:intergenic | 35.0% |
| AGCCATCAAGATGTATGAAA+AGG | + | chr2_1:58953802-58953821 | Msa0214410:CDS | 35.0% | |
| TGTGGAAGGTTTAATCTGAA+AGG | - | chr2_1:58953846-58953865 | None:intergenic | 35.0% | |
| !! | ACCTTACAAGCTGATTTTGT+AGG | + | chr2_1:58953938-58953957 | Msa0214410:intron | 35.0% |
| TCCTACAAAATCAGCTTGTA+AGG | - | chr2_1:58953942-58953961 | None:intergenic | 35.0% | |
| GATCCAACCCAAATTCTAAT+AGG | + | chr2_1:58953970-58953989 | Msa0214410:intron | 35.0% | |
| AACCCTATTAGAATTTGGGT+TGG | - | chr2_1:58953976-58953995 | None:intergenic | 35.0% | |
| AATAATAACGTAGCACTCGT+CGG | - | chr2_1:58954191-58954210 | None:intergenic | 35.0% | |
| GAGTGCTACGTTATTATTCT+GGG | + | chr2_1:58954193-58954212 | Msa0214410:CDS | 35.0% | |
| AGTGCTACGTTATTATTCTG+GGG | + | chr2_1:58954194-58954213 | Msa0214410:CDS | 35.0% | |
| ! | TATTATTCTGGGGAAGAAGA+TGG | + | chr2_1:58954204-58954223 | Msa0214410:CDS | 35.0% |
| ACGTATTGTCGTCATCTCTT+AGG | - | chr2_1:58953204-58953223 | None:intergenic | 40.0% | |
| AAGAGATGACGACAATACGT+AGG | + | chr2_1:58953204-58953223 | Msa0214410:exon | 40.0% | |
| AACGTGAGTACGTACAGTTT+CGG | - | chr2_1:58953282-58953301 | None:intergenic | 40.0% | |
| !! | GTGAATTGAGTTGAGGGTTT+AGG | - | chr2_1:58953321-58953340 | None:intergenic | 40.0% |
| TAACCCATGATTCGATTTCC+GGG | - | chr2_1:58953453-58953472 | None:intergenic | 40.0% | |
| GTAACCCATGATTCGATTTC+CGG | - | chr2_1:58953454-58953473 | None:intergenic | 40.0% | |
| TGCAGTTATGGGTAAAGTAG+AGG | + | chr2_1:58953544-58953563 | Msa0214410:intron | 40.0% | |
| GCAGTTATGGGTAAAGTAGA+GGG | + | chr2_1:58953545-58953564 | Msa0214410:intron | 40.0% | |
| CAGTTATGGGTAAAGTAGAG+GGG | + | chr2_1:58953546-58953565 | Msa0214410:intron | 40.0% | |
| GACATCAGCGACAATATGTA+AGG | + | chr2_1:58953665-58953684 | Msa0214410:intron | 40.0% | |
| TCCTTGTAGGTTTGTACACA+AGG | + | chr2_1:58953871-58953890 | Msa0214410:intron | 40.0% | |
| ACCTTGTGTACAAACCTACA+AGG | - | chr2_1:58953875-58953894 | None:intergenic | 40.0% | |
| GGATATGGACTTCCATTTGT+TGG | + | chr2_1:58954060-58954079 | Msa0214410:intron | 40.0% | |
| ! | GGACTTCCATTTGTTGGATT+AGG | + | chr2_1:58954066-58954085 | Msa0214410:intron | 40.0% |
| CGAGTGCTACGTTATTATTC+TGG | + | chr2_1:58954192-58954211 | Msa0214410:CDS | 40.0% | |
| ACGTATTGTCGTCATCTCTT+AGG | - | chr2_1:58953204-58953223 | None:intergenic | 40.0% | |
| AAGAGATGACGACAATACGT+AGG | + | chr2_1:58953204-58953223 | Msa0214410:exon | 40.0% | |
| AACGTGAGTACGTACAGTTT+CGG | - | chr2_1:58953282-58953301 | None:intergenic | 40.0% | |
| !! | GTGAATTGAGTTGAGGGTTT+AGG | - | chr2_1:58953321-58953340 | None:intergenic | 40.0% |
| TAACCCATGATTCGATTTCC+GGG | - | chr2_1:58953453-58953472 | None:intergenic | 40.0% | |
| GTAACCCATGATTCGATTTC+CGG | - | chr2_1:58953454-58953473 | None:intergenic | 40.0% | |
| TGCAGTTATGGGTAAAGTAG+AGG | + | chr2_1:58953544-58953563 | Msa0214410:intron | 40.0% | |
| GCAGTTATGGGTAAAGTAGA+GGG | + | chr2_1:58953545-58953564 | Msa0214410:intron | 40.0% | |
| CAGTTATGGGTAAAGTAGAG+GGG | + | chr2_1:58953546-58953565 | Msa0214410:intron | 40.0% | |
| GACATCAGCGACAATATGTA+AGG | + | chr2_1:58953665-58953684 | Msa0214410:intron | 40.0% | |
| TCCTTGTAGGTTTGTACACA+AGG | + | chr2_1:58953871-58953890 | Msa0214410:intron | 40.0% | |
| ACCTTGTGTACAAACCTACA+AGG | - | chr2_1:58953875-58953894 | None:intergenic | 40.0% | |
| GGATATGGACTTCCATTTGT+TGG | + | chr2_1:58954060-58954079 | Msa0214410:intron | 40.0% | |
| ! | GGACTTCCATTTGTTGGATT+AGG | + | chr2_1:58954066-58954085 | Msa0214410:intron | 40.0% |
| CGAGTGCTACGTTATTATTC+TGG | + | chr2_1:58954192-58954211 | Msa0214410:CDS | 40.0% | |
| GTCAGGCCATCTTGCTAAAT+AGG | - | chr2_1:58953409-58953428 | None:intergenic | 45.0% | |
| AACCCATGATTCGATTTCCG+GGG | - | chr2_1:58953452-58953471 | None:intergenic | 45.0% | |
| GTGTGTTGTGTGTTTGTGTC+TGG | + | chr2_1:58953697-58953716 | Msa0214410:intron | 45.0% | |
| TGTTGTGTGTTTGTGTCTGG+AGG | + | chr2_1:58953700-58953719 | Msa0214410:intron | 45.0% | |
| AAACCTACAAGGAAGCAGTG+TGG | - | chr2_1:58953864-58953883 | None:intergenic | 45.0% | |
| ! | TTCTGGGGAAGAAGATGGAT+TGG | + | chr2_1:58954209-58954228 | Msa0214410:CDS | 45.0% |
| ! | TCTGGGGAAGAAGATGGATT+GGG | + | chr2_1:58954210-58954229 | Msa0214410:CDS | 45.0% |
| !! | GGAAGAAGATGGATTGGGTA+TGG | + | chr2_1:58954215-58954234 | Msa0214410:intron | 45.0% |
| ! | GAGTGACATGCCGTTTAAGA+GGG | - | chr2_1:58954383-58954402 | None:intergenic | 45.0% |
| GTCAGGCCATCTTGCTAAAT+AGG | - | chr2_1:58953409-58953428 | None:intergenic | 45.0% | |
| AACCCATGATTCGATTTCCG+GGG | - | chr2_1:58953452-58953471 | None:intergenic | 45.0% | |
| GTGTGTTGTGTGTTTGTGTC+TGG | + | chr2_1:58953697-58953716 | Msa0214410:intron | 45.0% | |
| TGTTGTGTGTTTGTGTCTGG+AGG | + | chr2_1:58953700-58953719 | Msa0214410:intron | 45.0% | |
| AAACCTACAAGGAAGCAGTG+TGG | - | chr2_1:58953864-58953883 | None:intergenic | 45.0% | |
| ! | TTCTGGGGAAGAAGATGGAT+TGG | + | chr2_1:58954209-58954228 | Msa0214410:CDS | 45.0% |
| ! | TCTGGGGAAGAAGATGGATT+GGG | + | chr2_1:58954210-58954229 | Msa0214410:CDS | 45.0% |
| !! | GGAAGAAGATGGATTGGGTA+TGG | + | chr2_1:58954215-58954234 | Msa0214410:intron | 45.0% |
| ! | GAGTGACATGCCGTTTAAGA+GGG | - | chr2_1:58954383-58954402 | None:intergenic | 45.0% |
| ! | TGGGCGACTTGGAAATAGTC+AGG | - | chr2_1:58953426-58953445 | None:intergenic | 50.0% |
| GACTATTTCCAAGTCGCCCA+AGG | + | chr2_1:58953426-58953445 | Msa0214410:CDS | 50.0% | |
| ATGGGTAAAGTAGAGGGGCA+AGG | + | chr2_1:58953551-58953570 | Msa0214410:CDS | 50.0% | |
| TAGAGGGGCAAGGAGAATCT+TGG | + | chr2_1:58953561-58953580 | Msa0214410:CDS | 50.0% | |
| AACTGCAGTAACCGTTGCTC+CGG | + | chr2_1:58953595-58953614 | Msa0214410:CDS | 50.0% | |
| AACTGTTGCCTGCGATACTC+CGG | - | chr2_1:58953617-58953636 | None:intergenic | 50.0% | |
| CTACAAGGAAGCAGTGTGGA+AGG | - | chr2_1:58953860-58953879 | None:intergenic | 50.0% | |
| CTTCCACACTGCTTCCTTGT+AGG | + | chr2_1:58953858-58953877 | Msa0214410:intron | 50.0% | |
| AGTCCGTCAGCCCTCTTAAA+CGG | + | chr2_1:58954370-58954389 | Msa0214410:CDS | 50.0% | |
| ! | ATGCCGTTTAAGAGGGCTGA+CGG | - | chr2_1:58954376-58954395 | None:intergenic | 50.0% |
| ! | GGAGTGACATGCCGTTTAAG+AGG | - | chr2_1:58954384-58954403 | None:intergenic | 50.0% |
| ! | TGGGCGACTTGGAAATAGTC+AGG | - | chr2_1:58953426-58953445 | None:intergenic | 50.0% |
| GACTATTTCCAAGTCGCCCA+AGG | + | chr2_1:58953426-58953445 | Msa0214410:CDS | 50.0% | |
| ATGGGTAAAGTAGAGGGGCA+AGG | + | chr2_1:58953551-58953570 | Msa0214410:CDS | 50.0% | |
| TAGAGGGGCAAGGAGAATCT+TGG | + | chr2_1:58953561-58953580 | Msa0214410:CDS | 50.0% | |
| AACTGCAGTAACCGTTGCTC+CGG | + | chr2_1:58953595-58953614 | Msa0214410:CDS | 50.0% | |
| AACTGTTGCCTGCGATACTC+CGG | - | chr2_1:58953617-58953636 | None:intergenic | 50.0% | |
| CTACAAGGAAGCAGTGTGGA+AGG | - | chr2_1:58953860-58953879 | None:intergenic | 50.0% | |
| CTTCCACACTGCTTCCTTGT+AGG | + | chr2_1:58953858-58953877 | Msa0214410:intron | 50.0% | |
| AGTCCGTCAGCCCTCTTAAA+CGG | + | chr2_1:58954370-58954389 | Msa0214410:CDS | 50.0% | |
| ! | ATGCCGTTTAAGAGGGCTGA+CGG | - | chr2_1:58954376-58954395 | None:intergenic | 50.0% |
| ! | GGAGTGACATGCCGTTTAAG+AGG | - | chr2_1:58954384-58954403 | None:intergenic | 50.0% |
| GATTCGATTTCCGGGGCCTT+GGG | - | chr2_1:58953445-58953464 | None:intergenic | 55.0% | |
| TGATTCGATTTCCGGGGCCT+TGG | - | chr2_1:58953446-58953465 | None:intergenic | 55.0% | |
| AGGCCCCGGAAATCGAATCA+TGG | + | chr2_1:58953446-58953465 | Msa0214410:CDS | 55.0% | |
| GGCCCCGGAAATCGAATCAT+GGG | + | chr2_1:58953447-58953466 | Msa0214410:CDS | 55.0% | |
| GGGCAAGGAGAATCTTGGCA+TGG | + | chr2_1:58953566-58953585 | Msa0214410:CDS | 55.0% | |
| GATTCGATTTCCGGGGCCTT+GGG | - | chr2_1:58953445-58953464 | None:intergenic | 55.0% | |
| TGATTCGATTTCCGGGGCCT+TGG | - | chr2_1:58953446-58953465 | None:intergenic | 55.0% | |
| AGGCCCCGGAAATCGAATCA+TGG | + | chr2_1:58953446-58953465 | Msa0214410:CDS | 55.0% | |
| GGCCCCGGAAATCGAATCAT+GGG | + | chr2_1:58953447-58953466 | Msa0214410:CDS | 55.0% | |
| GGGCAAGGAGAATCTTGGCA+TGG | + | chr2_1:58953566-58953585 | Msa0214410:CDS | 55.0% | |
| CCTGCGATACTCCGGAGCAA+CGG | - | chr2_1:58953609-58953628 | None:intergenic | 60.0% | |
| CCTGCGATACTCCGGAGCAA+CGG | - | chr2_1:58953609-58953628 | None:intergenic | 60.0% | |
| TTCCAAGTCGCCCAAGGCCC+CGG | + | chr2_1:58953432-58953451 | Msa0214410:CDS | 65.0% | |
| !! | CCGTTGCTCCGGAGTATCGC+AGG | + | chr2_1:58953606-58953625 | Msa0214410:CDS | 65.0% |
| TTCCAAGTCGCCCAAGGCCC+CGG | + | chr2_1:58953432-58953451 | Msa0214410:CDS | 65.0% | |
| !! | CCGTTGCTCCGGAGTATCGC+AGG | + | chr2_1:58953606-58953625 | Msa0214410:CDS | 65.0% |
| TTCCGGGGCCTTGGGCGACT+TGG | - | chr2_1:58953437-58953456 | None:intergenic | 70.0% | |
| TTCCGGGGCCTTGGGCGACT+TGG | - | chr2_1:58953437-58953456 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 58953181 | 58954425 | 58953181 | ID=Msa0214410;Name=Msa0214410 |
| chr2_1 | mRNA | 58953181 | 58954425 | 58953181 | ID=Msa0214410-mRNA-1;Parent=Msa0214410;Name=Msa0214410-mRNA-1;_AED=0.47;_eAED=0.47;_QI=28|0.6|0.5|1|1|1|6|0|174 |
| chr2_1 | exon | 58953181 | 58953286 | 58953181 | ID=Msa0214410-mRNA-1:exon:16205;Parent=Msa0214410-mRNA-1 |
| chr2_1 | exon | 58953384 | 58953474 | 58953384 | ID=Msa0214410-mRNA-1:exon:16206;Parent=Msa0214410-mRNA-1 |
| chr2_1 | exon | 58953549 | 58953681 | 58953549 | ID=Msa0214410-mRNA-1:exon:16207;Parent=Msa0214410-mRNA-1 |
| chr2_1 | exon | 58953754 | 58953823 | 58953754 | ID=Msa0214410-mRNA-1:exon:16208;Parent=Msa0214410-mRNA-1 |
| chr2_1 | exon | 58954171 | 58954231 | 58954171 | ID=Msa0214410-mRNA-1:exon:16209;Parent=Msa0214410-mRNA-1 |
| chr2_1 | exon | 58954334 | 58954425 | 58954334 | ID=Msa0214410-mRNA-1:exon:16210;Parent=Msa0214410-mRNA-1 |
| chr2_1 | five_prime_UTR | 58953181 | 58953208 | 58953181 | ID=Msa0214410-mRNA-1:five_prime_utr;Parent=Msa0214410-mRNA-1 |
| chr2_1 | CDS | 58953209 | 58953286 | 58953209 | ID=Msa0214410-mRNA-1:cds;Parent=Msa0214410-mRNA-1 |
| chr2_1 | CDS | 58953384 | 58953474 | 58953384 | ID=Msa0214410-mRNA-1:cds;Parent=Msa0214410-mRNA-1 |
| chr2_1 | CDS | 58953549 | 58953681 | 58953549 | ID=Msa0214410-mRNA-1:cds;Parent=Msa0214410-mRNA-1 |
| chr2_1 | CDS | 58953754 | 58953823 | 58953754 | ID=Msa0214410-mRNA-1:cds;Parent=Msa0214410-mRNA-1 |
| chr2_1 | CDS | 58954171 | 58954231 | 58954171 | ID=Msa0214410-mRNA-1:cds;Parent=Msa0214410-mRNA-1 |
| chr2_1 | CDS | 58954334 | 58954425 | 58954334 | ID=Msa0214410-mRNA-1:cds;Parent=Msa0214410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
