Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214650 | XP_003596347.1 | 94.823 | 367 | 19 | 0 | 1 | 367 | 1 | 367 | 0.0 | 732 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214650 | sp|Q93VI8|TLP7_ARATH | 62.760 | 384 | 121 | 7 | 1 | 367 | 1 | 379 | 5.96e-159 | 454 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214650 | Q2HS99 | 94.823 | 367 | 19 | 0 | 1 | 367 | 1 | 367 | 0.0 | 732 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0214650 | TF | TUB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214650 | MtrunA17_Chr2g0315651 | 94.823 | 367 | 19 | 0 | 1 | 367 | 1 | 367 | 0.0 | 732 |
| Msa0214650 | MtrunA17_Chr2g0315641 | 75.269 | 372 | 83 | 5 | 1 | 367 | 4 | 371 | 0.0 | 567 |
| Msa0214650 | MtrunA17_Chr2g0286441 | 48.333 | 360 | 152 | 9 | 37 | 367 | 39 | 393 | 2.49e-106 | 317 |
| Msa0214650 | MtrunA17_Chr5g0404321 | 47.541 | 366 | 153 | 10 | 37 | 367 | 55 | 416 | 2.58e-104 | 313 |
| Msa0214650 | MtrunA17_Chr8g0373001 | 46.277 | 376 | 165 | 7 | 25 | 367 | 41 | 412 | 1.82e-102 | 308 |
| Msa0214650 | MtrunA17_Chr1g0196071 | 46.814 | 361 | 154 | 9 | 37 | 367 | 50 | 402 | 1.16e-98 | 298 |
| Msa0214650 | MtrunA17_Chr1g0201891 | 44.648 | 383 | 156 | 9 | 37 | 367 | 53 | 431 | 3.04e-97 | 295 |
| Msa0214650 | MtrunA17_Chr1g0155301 | 47.753 | 356 | 158 | 12 | 37 | 367 | 70 | 422 | 3.62e-96 | 292 |
| Msa0214650 | MtrunA17_Chr2g0278511 | 44.063 | 379 | 159 | 10 | 37 | 367 | 54 | 427 | 1.11e-95 | 291 |
| Msa0214650 | MtrunA17_Chr8g0373361 | 37.297 | 370 | 188 | 8 | 25 | 360 | 46 | 405 | 5.32e-68 | 219 |
| Msa0214650 | MtrunA17_Chr8g0373331 | 38.202 | 356 | 153 | 11 | 25 | 360 | 40 | 348 | 1.29e-54 | 183 |
| Msa0214650 | MtrunA17_Chr8g0373341 | 35.860 | 343 | 132 | 11 | 34 | 357 | 47 | 320 | 7.38e-40 | 144 |
| Msa0214650 | MtrunA17_Chr1g0156151 | 47.482 | 139 | 69 | 1 | 52 | 186 | 66 | 204 | 2.19e-35 | 129 |
| Msa0214650 | MtrunA17_Chr8g0373351 | 31.564 | 358 | 156 | 13 | 19 | 359 | 1 | 286 | 6.14e-27 | 108 |
| Msa0214650 | MtrunA17_Chr3g0091401 | 37.209 | 86 | 48 | 1 | 80 | 165 | 9 | 88 | 2.46e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214650 | AT1G53320.1 | 62.760 | 384 | 121 | 7 | 1 | 367 | 1 | 379 | 6.06e-160 | 454 |
| Msa0214650 | AT2G47900.2 | 44.722 | 360 | 165 | 6 | 37 | 367 | 52 | 406 | 1.58e-103 | 311 |
| Msa0214650 | AT2G47900.1 | 44.722 | 360 | 165 | 6 | 37 | 367 | 52 | 406 | 1.58e-103 | 311 |
| Msa0214650 | AT2G47900.3 | 44.598 | 361 | 165 | 6 | 37 | 367 | 52 | 407 | 4.09e-103 | 310 |
| Msa0214650 | AT2G18280.2 | 46.591 | 352 | 167 | 5 | 34 | 367 | 45 | 393 | 6.47e-102 | 306 |
| Msa0214650 | AT2G18280.1 | 46.591 | 352 | 167 | 5 | 34 | 367 | 45 | 393 | 6.47e-102 | 306 |
| Msa0214650 | AT1G76900.2 | 40.371 | 431 | 173 | 9 | 18 | 367 | 28 | 455 | 1.36e-97 | 297 |
| Msa0214650 | AT1G76900.1 | 40.371 | 431 | 173 | 9 | 18 | 367 | 28 | 455 | 1.36e-97 | 297 |
| Msa0214650 | AT1G76900.3 | 40.371 | 431 | 173 | 9 | 18 | 367 | 28 | 455 | 1.36e-97 | 297 |
| Msa0214650 | AT1G25280.1 | 43.990 | 391 | 155 | 9 | 37 | 367 | 59 | 445 | 1.18e-94 | 290 |
| Msa0214650 | AT3G06380.1 | 45.455 | 363 | 163 | 9 | 31 | 367 | 27 | 380 | 2.77e-94 | 286 |
| Msa0214650 | AT1G47270.3 | 43.978 | 357 | 170 | 10 | 33 | 367 | 40 | 388 | 2.35e-89 | 274 |
| Msa0214650 | AT1G47270.1 | 43.978 | 357 | 170 | 10 | 33 | 367 | 65 | 413 | 3.86e-89 | 275 |
| Msa0214650 | AT1G47270.2 | 43.978 | 357 | 170 | 10 | 33 | 367 | 64 | 412 | 4.97e-89 | 274 |
| Msa0214650 | AT5G18680.1 | 44.022 | 368 | 175 | 10 | 25 | 367 | 28 | 389 | 1.17e-88 | 272 |
| Msa0214650 | AT1G43640.1 | 41.514 | 383 | 168 | 10 | 35 | 367 | 53 | 429 | 2.00e-88 | 273 |
| Msa0214650 | AT1G43640.2 | 41.734 | 369 | 159 | 10 | 49 | 367 | 1 | 363 | 9.22e-85 | 261 |
| Msa0214650 | AT3G06380.2 | 44.027 | 293 | 130 | 8 | 100 | 367 | 5 | 288 | 6.87e-68 | 216 |
| Msa0214650 | AT5G18680.2 | 43.537 | 294 | 137 | 8 | 98 | 367 | 9 | 297 | 1.29e-65 | 210 |
| Msa0214650 | AT1G25280.3 | 41.328 | 271 | 96 | 8 | 156 | 367 | 1 | 267 | 2.42e-50 | 170 |
| Msa0214650 | AT1G25280.2 | 41.328 | 271 | 96 | 8 | 156 | 367 | 1 | 267 | 2.42e-50 | 170 |
| Msa0214650 | AT1G61940.2 | 48.276 | 87 | 45 | 0 | 40 | 126 | 1 | 87 | 1.56e-22 | 95.9 |
| Msa0214650 | AT1G61940.1 | 49.180 | 61 | 31 | 0 | 40 | 100 | 1 | 61 | 1.48e-14 | 73.2 |
Find 101 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCACCACTGTGTTGTAAAT+TGG | 0.184549 | 2_1:+59201874 | Msa0214650:CDS |
| CGGCTTGTTCTGTCACTTGA+TGG | 0.251724 | 2_1:-59202524 | None:intergenic |
| ATCATTCGCCTTGGACGTTT+TGG | 0.253223 | 2_1:-59202638 | None:intergenic |
| GCTTGTCAGTAAGATCATTT+TGG | 0.266008 | 2_1:+59203043 | Msa0214650:exon |
| ATAATATCCGCAAGAAGTTC+TGG | 0.306087 | 2_1:-59200859 | None:intergenic |
| TGGGGAAGGTCGCGTGGCCC+TGG | 0.326133 | 2_1:-59201855 | None:intergenic |
| TGTTCTGTCACTTGATGGTT+TGG | 0.330137 | 2_1:-59202519 | None:intergenic |
| GAACGCATGGAAGGCGGATA+AGG | 0.334268 | 2_1:-59202987 | None:intergenic |
| TTTCCCTTCTTGTCTTAAAC+AGG | 0.347974 | 2_1:+59201014 | Msa0214650:CDS |
| GATATCTTCTAGCTGCTAAT+AGG | 0.354984 | 2_1:-59202124 | None:intergenic |
| GCCATTTGCTTAACTAGCTT+CGG | 0.361202 | 2_1:+59203010 | Msa0214650:CDS |
| GTACGGTCACCTTCGCTTAA+CGG | 0.361387 | 2_1:+59200982 | Msa0214650:CDS |
| TCTTCATCTCCTCTCCCTCC+TGG | 0.374907 | 2_1:-59202902 | None:intergenic |
| GCTTTACCACCCTCTCTTCT+CGG | 0.379861 | 2_1:+59200602 | None:intergenic |
| ATCTTACTGACAAGCCAGTT+TGG | 0.393584 | 2_1:-59203035 | None:intergenic |
| TCGCCAGCATTAACAGATAC+AGG | 0.396379 | 2_1:+59202095 | Msa0214650:intron |
| AACTAGCTTCGGCACCAAAC+TGG | 0.421298 | 2_1:+59203021 | Msa0214650:CDS |
| GTACTTACTTACATGGTGTA+AGG | 0.424832 | 2_1:-59201932 | None:intergenic |
| CAAAGCCAACCAGGAGGGAG+AGG | 0.425267 | 2_1:+59202893 | Msa0214650:CDS |
| ATGTTACTATCAATTATTTG+TGG | 0.443910 | 2_1:+59203228 | Msa0214650:three_prime_UTR |
| AACGCATGGAAGGCGGATAA+GGG | 0.450456 | 2_1:-59202986 | None:intergenic |
| CTGTCATATCCTTTCTCTCA+TGG | 0.452722 | 2_1:-59202829 | None:intergenic |
| ACAATTTATGACGCCTCGGC+TGG | 0.460766 | 2_1:+59202494 | Msa0214650:CDS |
| TGAGTTTATTATTTGATTGA+AGG | 0.464459 | 2_1:+59203149 | Msa0214650:intron |
| CTTGAACTTCCATGAGAGAA+AGG | 0.465557 | 2_1:+59202820 | Msa0214650:CDS |
| TCCGATGTGGAACGAGCAAT+TGG | 0.466061 | 2_1:+59202787 | Msa0214650:CDS |
| CATTAAGACATGTATAATGA+TGG | 0.466618 | 2_1:-59200716 | None:intergenic |
| TAATGATGGTTCTATGACTT+GGG | 0.473096 | 2_1:-59200702 | None:intergenic |
| CAAGGAAGTAATGCTTATGT+TGG | 0.475540 | 2_1:+59202200 | Msa0214650:CDS |
| CCCGCTGGTAACGTTGAGGC+AGG | 0.477573 | 2_1:+59202581 | Msa0214650:CDS |
| CATCTCCTCTCCCTCCTGGT+TGG | 0.480773 | 2_1:-59202898 | None:intergenic |
| CGTTACCAGCGGGAACTTGA+GGG | 0.487229 | 2_1:-59202571 | None:intergenic |
| TATTAGCAGCTAGAAGATAT+CGG | 0.489255 | 2_1:+59202126 | Msa0214650:CDS |
| CTTGTGCCTGCGTTTGCAAA+CGG | 0.489375 | 2_1:+59200935 | Msa0214650:CDS |
| CTTTCAGCTGGTTGCTACTG+TGG | 0.494990 | 2_1:+59202868 | Msa0214650:CDS |
| TTTGTCCTCCGATGCACTAC+CGG | 0.499562 | 2_1:-59200815 | None:intergenic |
| CTTTCGCATATTGATGAGGC+AGG | 0.503626 | 2_1:-59202677 | None:intergenic |
| GCCGAAGCTAGTTAAGCAAA+TGG | 0.503920 | 2_1:-59203011 | None:intergenic |
| CCAATTTACAACACAGTGGT+GGG | 0.506056 | 2_1:-59201874 | None:intergenic |
| ACGATGCGGCCATTGTTCTC+CGG | 0.508756 | 2_1:-59200899 | None:intergenic |
| AGAGAGCAAATCATTCGCCT+TGG | 0.519881 | 2_1:-59202647 | None:intergenic |
| TGATGGTTTGGCACCAGCCG+AGG | 0.523937 | 2_1:-59202507 | None:intergenic |
| CAGATACTTCAACAATGCTC+AGG | 0.525873 | 2_1:+59200765 | Msa0214650:CDS |
| ATCAGTGAAGAACTTTCAGC+TGG | 0.527624 | 2_1:+59202856 | Msa0214650:CDS |
| ACGTTACCAGCGGGAACTTG+AGG | 0.529213 | 2_1:-59202572 | None:intergenic |
| ATGCTTATGTTGGCAAGCTA+AGG | 0.535171 | 2_1:+59202210 | Msa0214650:CDS |
| TCCAATTTACAACACAGTGG+TGG | 0.539488 | 2_1:-59201875 | None:intergenic |
| CATCGGAGGACAAAACTGAT+TGG | 0.540142 | 2_1:+59200824 | Msa0214650:CDS |
| ATATCACACGTGAGGTCGTA+CGG | 0.540706 | 2_1:+59200965 | Msa0214650:CDS |
| AGGACCTGTTTAAGACAAGA+AGG | 0.544045 | 2_1:-59201018 | None:intergenic |
| CGCAAGAAGTTCTGGAAGCA+TGG | 0.545732 | 2_1:-59200851 | None:intergenic |
| TTAAGCAAATGGCGAACGCA+TGG | 0.557939 | 2_1:-59203000 | None:intergenic |
| AGGAGAGATCCGAGAAGAGA+GGG | 0.559836 | 2_1:-59200611 | None:intergenic |
| CTTCACAATTTATGACGCCT+CGG | 0.560452 | 2_1:+59202490 | Msa0214650:CDS |
| GGCAAGATAGAGGTAAAATG+TGG | 0.562187 | 2_1:-59201910 | None:intergenic |
| ACTTCCTTGTGAAAAGTCAT+CGG | 0.574248 | 2_1:-59202186 | None:intergenic |
| ATTAAACGAGTTGATGTCAC+CGG | 0.574864 | 2_1:+59200880 | Msa0214650:CDS |
| TTTATTCTTCAAGATTGTGT+AGG | 0.575970 | 2_1:-59202762 | None:intergenic |
| GGAACGAGCAATTGGAGTGC+TGG | 0.578985 | 2_1:+59202795 | Msa0214650:CDS |
| CAGTGGTGGGGAAGGTCGCG+TGG | 0.579862 | 2_1:-59201861 | None:intergenic |
| CGCCAGCATTAACAGATACA+GGG | 0.585383 | 2_1:+59202096 | Msa0214650:intron |
| TACTTACTTACATGGTGTAA+GGG | 0.588591 | 2_1:-59201931 | None:intergenic |
| GCAAATGGCGAACGCATGGA+AGG | 0.591902 | 2_1:-59202996 | None:intergenic |
| TAGGAGAGATCCGAGAAGAG+AGG | 0.593674 | 2_1:-59200612 | None:intergenic |
| ACTGTGGATCAAAGCCAACC+AGG | 0.600528 | 2_1:+59202884 | Msa0214650:CDS |
| TCTGTTTGCTTGCAAAACGC+CGG | 0.603910 | 2_1:-59202544 | None:intergenic |
| CACCACCGGTAGTGCATCGG+AGG | 0.607308 | 2_1:+59200810 | Msa0214650:CDS |
| TGACACCACCGGTAGTGCAT+CGG | 0.608180 | 2_1:+59200807 | Msa0214650:CDS |
| GTGCCTGCGTTTGCAAACGG+TGG | 0.610120 | 2_1:+59200938 | Msa0214650:CDS |
| ATAATGATGGTTCTATGACT+TGG | 0.610978 | 2_1:-59200703 | None:intergenic |
| CCTGCCTCAACGTTACCAGC+GGG | 0.612989 | 2_1:-59202581 | None:intergenic |
| TAAGGGCTGTCTATAGTACA+TGG | 0.615567 | 2_1:-59202969 | None:intergenic |
| TTACAACACAGTGGTGGGGA+AGG | 0.615695 | 2_1:-59201869 | None:intergenic |
| TGAACTTTCGCATATTGATG+AGG | 0.617942 | 2_1:-59202681 | None:intergenic |
| ATGGTGTAAGGGCAAGATAG+AGG | 0.623484 | 2_1:-59201920 | None:intergenic |
| CCCTGCCTCAACGTTACCAG+CGG | 0.624163 | 2_1:-59202582 | None:intergenic |
| CATGCTTCCAGAACTTCTTG+CGG | 0.624235 | 2_1:+59200852 | Msa0214650:CDS |
| CAATTTACAACACAGTGGTG+GGG | 0.625248 | 2_1:-59201873 | None:intergenic |
| ATAAGCCCTCAAGTTCCCGC+TGG | 0.629019 | 2_1:+59202566 | Msa0214650:CDS |
| TCCAATTGCTCGTTCCACAT+CGG | 0.629514 | 2_1:-59202788 | None:intergenic |
| GTCCTCCGATGCACTACCGG+TGG | 0.634176 | 2_1:-59200812 | None:intergenic |
| TGAAGAATAAAGCTCCGATG+TGG | 0.636117 | 2_1:+59202774 | Msa0214650:CDS |
| AATGATGGTTCTATGACTTG+GGG | 0.636509 | 2_1:-59200701 | None:intergenic |
| TCTCCACCGTTTGCAAACGC+AGG | 0.641600 | 2_1:-59200941 | None:intergenic |
| GCTCAGGCTCTCAATGCTAC+CGG | 0.643110 | 2_1:+59200781 | Msa0214650:CDS |
| GGACCTGTTTAAGACAAGAA+GGG | 0.643301 | 2_1:-59201017 | None:intergenic |
| AGAGATCCGAGAAGAGAGGG+TGG | 0.644346 | 2_1:-59200608 | None:intergenic |
| GCTACCGGCGATGACACCAC+CGG | 0.645253 | 2_1:+59200796 | Msa0214650:CDS |
| AATGGCGAACGCATGGAAGG+CGG | 0.645991 | 2_1:-59202993 | None:intergenic |
| ACTACCGGTGGTGTCATCGC+CGG | 0.646189 | 2_1:-59200800 | None:intergenic |
| TGGATCAAAGCCAACCAGGA+GGG | 0.647654 | 2_1:+59202888 | Msa0214650:CDS |
| CCGCTGGTAACGTTGAGGCA+GGG | 0.648958 | 2_1:+59202582 | Msa0214650:CDS |
| CCCCTACTTTACAAAACTGG+AGG | 0.654395 | 2_1:-59202934 | None:intergenic |
| AAGATAGAGGTAAAATGTGG+AGG | 0.660216 | 2_1:-59201907 | None:intergenic |
| CATCAAGTGACAGAACAAGC+CGG | 0.663743 | 2_1:+59202525 | Msa0214650:CDS |
| AGTTCCCGCTGGTAACGTTG+AGG | 0.678794 | 2_1:+59202577 | Msa0214650:CDS |
| GCGACGACATTTCGACGATG+CGG | 0.691215 | 2_1:-59200913 | None:intergenic |
| TTGATGTCACCGGAGAACAA+TGG | 0.692340 | 2_1:+59200890 | Msa0214650:CDS |
| TATTCCAATTTACAACACAG+TGG | 0.695058 | 2_1:-59201878 | None:intergenic |
| GTGGAGAGATATCACACGTG+AGG | 0.702332 | 2_1:+59200957 | Msa0214650:CDS |
| GTGGATCAAAGCCAACCAGG+AGG | 0.711734 | 2_1:+59202887 | Msa0214650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATATTATTTTAATATT+AGG | + | chr2_1:59201738-59201757 | Msa0214650:intron | 0.0% |
| !! | ATAATGATTAAAATTTCAAA+TGG | + | chr2_1:59201990-59202009 | Msa0214650:intron | 10.0% |
| !!! | CAATAAATTGTTATTTTTAA+TGG | - | chr2_1:59202380-59202399 | None:intergenic | 10.0% |
| !!! | TGTTAATGTTATATTGTTTT+TGG | + | chr2_1:59203186-59203205 | Msa0214650:three_prime_UTR | 15.0% |
| !! | TTTCTCTCTTGAATAATTTA+TGG | + | chr2_1:59201065-59201084 | Msa0214650:intron | 20.0% |
| !! | TTTATGGATCATGAAAAATT+TGG | + | chr2_1:59201081-59201100 | Msa0214650:intron | 20.0% |
| !! | TTTCAAATTATTAGTTGTGT+CGG | - | chr2_1:59201216-59201235 | None:intergenic | 20.0% |
| !!! | ATCTTGTTATGTTTTGATAA+AGG | + | chr2_1:59201405-59201424 | Msa0214650:intron | 20.0% |
| !! | TCAAACTATTAAAGAAGAAA+AGG | - | chr2_1:59201641-59201660 | None:intergenic | 20.0% |
| !! | TTAAAATTTCAAATGGAGAT+TGG | + | chr2_1:59201997-59202016 | Msa0214650:intron | 20.0% |
| !!! | TACTCTTTTTCTTCAATAAA+TGG | - | chr2_1:59202288-59202307 | None:intergenic | 20.0% |
| !! | ATTTATTGAAGAAAAAGAGT+AGG | + | chr2_1:59202287-59202306 | Msa0214650:intron | 20.0% |
| !!! | TTCACTTTTTATCATTTGAA+AGG | - | chr2_1:59203092-59203111 | None:intergenic | 20.0% |
| !! | TGAGTTTATTATTTGATTGA+AGG | + | chr2_1:59203149-59203168 | Msa0214650:intron | 20.0% |
| !! | ATGTTACTATCAATTATTTG+TGG | + | chr2_1:59203228-59203247 | Msa0214650:three_prime_UTR | 20.0% |
| ! | CATTAAGACATGTATAATGA+TGG | - | chr2_1:59200719-59200738 | None:intergenic | 25.0% |
| !! | AAATGAATTCATTTTGTTGC+AGG | - | chr2_1:59201041-59201060 | None:intergenic | 25.0% |
| !! | CTAACATTTTGTTCAATTAG+TGG | + | chr2_1:59201139-59201158 | Msa0214650:intron | 25.0% |
| ! | ATCAATTGAATTAAGAGAGT+TGG | + | chr2_1:59201373-59201392 | Msa0214650:intron | 25.0% |
| ! | GATGCATTTATCAAGTATAT+AGG | + | chr2_1:59201713-59201732 | Msa0214650:intron | 25.0% |
| ! | AAATAAAATGATCCTCATTC+AGG | + | chr2_1:59202253-59202272 | Msa0214650:intron | 25.0% |
| ! | TTAATATTTACTCCTTTGTC+CGG | - | chr2_1:59202331-59202350 | None:intergenic | 25.0% |
| ! | TTTATTCTTCAAGATTGTGT+AGG | - | chr2_1:59202765-59202784 | None:intergenic | 25.0% |
| !!! | TTTCTTTTTTTCCTTTCACT+TGG | + | chr2_1:59203125-59203144 | Msa0214650:intron | 25.0% |
| !!! | GTGTGTGTTGTTTTTACATT+AGG | - | chr2_1:59200634-59200653 | None:intergenic | 30.0% |
| ! | TAATGATGGTTCTATGACTT+GGG | - | chr2_1:59200705-59200724 | None:intergenic | 30.0% |
| ! | ATAATGATGGTTCTATGACT+TGG | - | chr2_1:59200706-59200725 | None:intergenic | 30.0% |
| GAAAATGAAACCAAGTTACT+CGG | + | chr2_1:59201517-59201536 | Msa0214650:intron | 30.0% | |
| TATTCCAATTTACAACACAG+TGG | - | chr2_1:59201881-59201900 | None:intergenic | 30.0% | |
| TACTTACTTACATGGTGTAA+GGG | - | chr2_1:59201934-59201953 | None:intergenic | 30.0% | |
| CAAAACAGTACTTACTTACA+TGG | - | chr2_1:59201942-59201961 | None:intergenic | 30.0% | |
| !! | CATGTAAGTAAGTACTGTTT+TGG | + | chr2_1:59201940-59201959 | Msa0214650:intron | 30.0% |
| !! | GTTTTGGCAAAAGGATTATT+TGG | + | chr2_1:59201956-59201975 | Msa0214650:intron | 30.0% |
| TATTAGCAGCTAGAAGATAT+CGG | + | chr2_1:59202126-59202145 | Msa0214650:CDS | 30.0% | |
| TATTGAAGAAAAAGAGTAGG+AGG | + | chr2_1:59202290-59202309 | Msa0214650:intron | 30.0% | |
| TAATATTTACTCCTTTGTCC+GGG | - | chr2_1:59202330-59202349 | None:intergenic | 30.0% | |
| !!! | CAAAAGGCTGAATTTTTTGT+AGG | - | chr2_1:59202615-59202634 | None:intergenic | 30.0% |
| ! | AATGATGGTTCTATGACTTG+GGG | - | chr2_1:59200704-59200723 | None:intergenic | 35.0% |
| ATAATATCCGCAAGAAGTTC+TGG | - | chr2_1:59200862-59200881 | None:intergenic | 35.0% | |
| !! | ATTAAACGAGTTGATGTCAC+CGG | + | chr2_1:59200880-59200899 | Msa0214650:CDS | 35.0% |
| TTTCCCTTCTTGTCTTAAAC+AGG | + | chr2_1:59201014-59201033 | Msa0214650:CDS | 35.0% | |
| CTATCTATGAAGCATGGATA+CGG | + | chr2_1:59201162-59201181 | Msa0214650:intron | 35.0% | |
| AAAATCACGAGTTAACTCGT+AGG | + | chr2_1:59201433-59201452 | Msa0214650:intron | 35.0% | |
| ACTCGTAGGATCATATGTTT+AGG | + | chr2_1:59201447-59201466 | Msa0214650:intron | 35.0% | |
| TCTACGAGTTAATTTCACGT+AGG | + | chr2_1:59201775-59201794 | Msa0214650:intron | 35.0% | |
| AAGATAGAGGTAAAATGTGG+AGG | - | chr2_1:59201910-59201929 | None:intergenic | 35.0% | |
| GTACTTACTTACATGGTGTA+AGG | - | chr2_1:59201935-59201954 | None:intergenic | 35.0% | |
| !!! | GTAAGTACTGTTTTGGCAAA+AGG | + | chr2_1:59201947-59201966 | Msa0214650:intron | 35.0% |
| ! | GATATCTTCTAGCTGCTAAT+AGG | - | chr2_1:59202127-59202146 | None:intergenic | 35.0% |
| ACTTCCTTGTGAAAAGTCAT+CGG | - | chr2_1:59202189-59202208 | None:intergenic | 35.0% | |
| CAAGGAAGTAATGCTTATGT+TGG | + | chr2_1:59202200-59202219 | Msa0214650:CDS | 35.0% | |
| AAATGATCCTCATTCAGGAA+AGG | + | chr2_1:59202258-59202277 | Msa0214650:intron | 35.0% | |
| !!! | TTGGACGTTTTGGTTTCAAA+AGG | - | chr2_1:59202631-59202650 | None:intergenic | 35.0% |
| !!! | TTTTGAAACCAAAACGTCCA+AGG | + | chr2_1:59202630-59202649 | Msa0214650:CDS | 35.0% |
| TGAACTTTCGCATATTGATG+AGG | - | chr2_1:59202684-59202703 | None:intergenic | 35.0% | |
| !! | TCCTCCAGTTTTGTAAAGTA+GGG | + | chr2_1:59202933-59202952 | Msa0214650:CDS | 35.0% |
| ! | GCTTGTCAGTAAGATCATTT+TGG | + | chr2_1:59203043-59203062 | Msa0214650:exon | 35.0% |
| AATAAACTCAGCCAAGTGAA+AGG | - | chr2_1:59203139-59203158 | None:intergenic | 35.0% | |
| CAGATACTTCAACAATGCTC+AGG | + | chr2_1:59200765-59200784 | Msa0214650:CDS | 40.0% | |
| ! | GTGATTTTTCCGTTAAGCGA+AGG | - | chr2_1:59200994-59201013 | None:intergenic | 40.0% |
| ! | GGACCTGTTTAAGACAAGAA+GGG | - | chr2_1:59201020-59201039 | None:intergenic | 40.0% |
| ! | AGGACCTGTTTAAGACAAGA+AGG | - | chr2_1:59201021-59201040 | None:intergenic | 40.0% |
| TAGTGGCTATCTATGAAGCA+TGG | + | chr2_1:59201156-59201175 | Msa0214650:intron | 40.0% | |
| TATGAAGCACAAACACACCT+CGG | - | chr2_1:59201324-59201343 | None:intergenic | 40.0% | |
| !!! | ACTCTCGATTTTGACTACCT+TGG | + | chr2_1:59201816-59201835 | Msa0214650:intron | 40.0% |
| CAATTTACAACACAGTGGTG+GGG | - | chr2_1:59201876-59201895 | None:intergenic | 40.0% | |
| CCAATTTACAACACAGTGGT+GGG | - | chr2_1:59201877-59201896 | None:intergenic | 40.0% | |
| TCCAATTTACAACACAGTGG+TGG | - | chr2_1:59201878-59201897 | None:intergenic | 40.0% | |
| GGCAAGATAGAGGTAAAATG+TGG | - | chr2_1:59201913-59201932 | None:intergenic | 40.0% | |
| TTCCCTGTATCTGTTAATGC+TGG | - | chr2_1:59202101-59202120 | None:intergenic | 40.0% | |
| ATGCTTATGTTGGCAAGCTA+AGG | + | chr2_1:59202210-59202229 | Msa0214650:CDS | 40.0% | |
| ! | TGGTTTTCCTTTCCTGAATG+AGG | - | chr2_1:59202268-59202287 | None:intergenic | 40.0% |
| TTTGTCCGGGTTTAAACTCA+AGG | - | chr2_1:59202317-59202336 | None:intergenic | 40.0% | |
| TTGAGTTTAAACCCGGACAA+AGG | + | chr2_1:59202316-59202335 | Msa0214650:intron | 40.0% | |
| CTTCACAATTTATGACGCCT+CGG | + | chr2_1:59202490-59202509 | Msa0214650:CDS | 40.0% | |
| ! | TGTTCTGTCACTTGATGGTT+TGG | - | chr2_1:59202522-59202541 | None:intergenic | 40.0% |
| TGAAGAATAAAGCTCCGATG+TGG | + | chr2_1:59202774-59202793 | Msa0214650:CDS | 40.0% | |
| CTTGAACTTCCATGAGAGAA+AGG | + | chr2_1:59202820-59202839 | Msa0214650:CDS | 40.0% | |
| CTGTCATATCCTTTCTCTCA+TGG | - | chr2_1:59202832-59202851 | None:intergenic | 40.0% | |
| ATCAGTGAAGAACTTTCAGC+TGG | + | chr2_1:59202856-59202875 | Msa0214650:CDS | 40.0% | |
| !! | CTCCTCCAGTTTTGTAAAGT+AGG | + | chr2_1:59202932-59202951 | Msa0214650:CDS | 40.0% |
| !! | CCTCCAGTTTTGTAAAGTAG+GGG | + | chr2_1:59202934-59202953 | Msa0214650:CDS | 40.0% |
| !! | CTCCAGTTTTGTAAAGTAGG+GGG | + | chr2_1:59202935-59202954 | Msa0214650:CDS | 40.0% |
| TAAGGGCTGTCTATAGTACA+TGG | - | chr2_1:59202972-59202991 | None:intergenic | 40.0% | |
| ! | GCCATTTGCTTAACTAGCTT+CGG | + | chr2_1:59203010-59203029 | Msa0214650:CDS | 40.0% |
| ATCTTACTGACAAGCCAGTT+TGG | - | chr2_1:59203038-59203057 | None:intergenic | 40.0% | |
| CATCGGAGGACAAAACTGAT+TGG | + | chr2_1:59200824-59200843 | Msa0214650:CDS | 45.0% | |
| CATGCTTCCAGAACTTCTTG+CGG | + | chr2_1:59200852-59200871 | Msa0214650:CDS | 45.0% | |
| TTGATGTCACCGGAGAACAA+TGG | + | chr2_1:59200890-59200909 | Msa0214650:CDS | 45.0% | |
| ATATCACACGTGAGGTCGTA+CGG | + | chr2_1:59200965-59200984 | Msa0214650:CDS | 45.0% | |
| ATGAAGCATGGATACGGACA+CGG | + | chr2_1:59201168-59201187 | Msa0214650:intron | 45.0% | |
| TACAAGTGTCAGTGTCGTGT+CGG | + | chr2_1:59201257-59201276 | Msa0214650:intron | 45.0% | |
| ATGAAGCACAAACACACCTC+GGG | - | chr2_1:59201323-59201342 | None:intergenic | 45.0% | |
| GAGGTGTGTTTGTGCTTCAT+AGG | + | chr2_1:59201323-59201342 | Msa0214650:intron | 45.0% | |
| GTGTGTTTGTGCTTCATAGG+TGG | + | chr2_1:59201326-59201345 | Msa0214650:intron | 45.0% | |
| ATGAAACCAAGTTACTCGGC+TGG | + | chr2_1:59201521-59201540 | Msa0214650:intron | 45.0% | |
| GCTGGAAGTCATCAAAACCA+AGG | - | chr2_1:59201836-59201855 | None:intergenic | 45.0% | |
| !! | GTTTTGATGACTTCCAGCCA+GGG | + | chr2_1:59201838-59201857 | Msa0214650:intron | 45.0% |
| CCCACCACTGTGTTGTAAAT+TGG | + | chr2_1:59201874-59201893 | Msa0214650:CDS | 45.0% | |
| ATGGTGTAAGGGCAAGATAG+AGG | - | chr2_1:59201923-59201942 | None:intergenic | 45.0% | |
| TCGCCAGCATTAACAGATAC+AGG | + | chr2_1:59202095-59202114 | Msa0214650:intron | 45.0% | |
| CGCCAGCATTAACAGATACA+GGG | + | chr2_1:59202096-59202115 | Msa0214650:intron | 45.0% | |
| ! | GATGCCGATGACTTTTCACA+AGG | + | chr2_1:59202182-59202201 | Msa0214650:CDS | 45.0% |
| GAGGACCTTGAGTTTAAACC+CGG | + | chr2_1:59202309-59202328 | Msa0214650:intron | 45.0% | |
| CATCAAGTGACAGAACAAGC+CGG | + | chr2_1:59202525-59202544 | Msa0214650:CDS | 45.0% | |
| TCTGTTTGCTTGCAAAACGC+CGG | - | chr2_1:59202547-59202566 | None:intergenic | 45.0% | |
| ! | ATCATTCGCCTTGGACGTTT+TGG | - | chr2_1:59202641-59202660 | None:intergenic | 45.0% |
| AGAGAGCAAATCATTCGCCT+TGG | - | chr2_1:59202650-59202669 | None:intergenic | 45.0% | |
| CTTTCGCATATTGATGAGGC+AGG | - | chr2_1:59202680-59202699 | None:intergenic | 45.0% | |
| TCCAATTGCTCGTTCCACAT+CGG | - | chr2_1:59202791-59202810 | None:intergenic | 45.0% | |
| CCCCTACTTTACAAAACTGG+AGG | - | chr2_1:59202937-59202956 | None:intergenic | 45.0% | |
| CACCCCCTACTTTACAAAAC+TGG | - | chr2_1:59202940-59202959 | None:intergenic | 45.0% | |
| TTAAGCAAATGGCGAACGCA+TGG | - | chr2_1:59203003-59203022 | None:intergenic | 45.0% | |
| GCCGAAGCTAGTTAAGCAAA+TGG | - | chr2_1:59203014-59203033 | None:intergenic | 45.0% | |
| AGGAGAGATCCGAGAAGAGA+GGG | - | chr2_1:59200614-59200633 | None:intergenic | 50.0% | |
| TAGGAGAGATCCGAGAAGAG+AGG | - | chr2_1:59200615-59200634 | None:intergenic | 50.0% | |
| TTTGTCCTCCGATGCACTAC+CGG | - | chr2_1:59200818-59200837 | None:intergenic | 50.0% | |
| !! | CGCAAGAAGTTCTGGAAGCA+TGG | - | chr2_1:59200854-59200873 | None:intergenic | 50.0% |
| CTTGTGCCTGCGTTTGCAAA+CGG | + | chr2_1:59200935-59200954 | Msa0214650:CDS | 50.0% | |
| GTGGAGAGATATCACACGTG+AGG | + | chr2_1:59200957-59200976 | Msa0214650:CDS | 50.0% | |
| GTACGGTCACCTTCGCTTAA+CGG | + | chr2_1:59200982-59201001 | Msa0214650:CDS | 50.0% | |
| !! | GGTTTTGATGACTTCCAGCC+AGG | + | chr2_1:59201837-59201856 | Msa0214650:intron | 50.0% |
| ! | TTACAACACAGTGGTGGGGA+AGG | - | chr2_1:59201872-59201891 | None:intergenic | 50.0% |
| ACAATTTATGACGCCTCGGC+TGG | + | chr2_1:59202494-59202513 | Msa0214650:CDS | 50.0% | |
| ! | CGGCTTGTTCTGTCACTTGA+TGG | - | chr2_1:59202527-59202546 | None:intergenic | 50.0% |
| TCCGATGTGGAACGAGCAAT+TGG | + | chr2_1:59202787-59202806 | Msa0214650:CDS | 50.0% | |
| CTTTCAGCTGGTTGCTACTG+TGG | + | chr2_1:59202868-59202887 | Msa0214650:CDS | 50.0% | |
| ACTGTGGATCAAAGCCAACC+AGG | + | chr2_1:59202884-59202903 | Msa0214650:CDS | 50.0% | |
| TGGATCAAAGCCAACCAGGA+GGG | + | chr2_1:59202888-59202907 | Msa0214650:CDS | 50.0% | |
| AACGCATGGAAGGCGGATAA+GGG | - | chr2_1:59202989-59203008 | None:intergenic | 50.0% | |
| ! | AACTAGCTTCGGCACCAAAC+TGG | + | chr2_1:59203021-59203040 | Msa0214650:CDS | 50.0% |
| GCTCAGGCTCTCAATGCTAC+CGG | + | chr2_1:59200781-59200800 | Msa0214650:CDS | 55.0% | |
| TGACACCACCGGTAGTGCAT+CGG | + | chr2_1:59200807-59200826 | Msa0214650:CDS | 55.0% | |
| ACGATGCGGCCATTGTTCTC+CGG | - | chr2_1:59200902-59200921 | None:intergenic | 55.0% | |
| GCGACGACATTTCGACGATG+CGG | - | chr2_1:59200916-59200935 | None:intergenic | 55.0% | |
| TCTCCACCGTTTGCAAACGC+AGG | - | chr2_1:59200944-59200963 | None:intergenic | 55.0% | |
| ATACGGACACGGACACGACA+CGG | + | chr2_1:59201179-59201198 | Msa0214650:intron | 55.0% | |
| ! | TGTCAGTGTCGTGTCGGTGT+CGG | + | chr2_1:59201263-59201282 | Msa0214650:intron | 55.0% |
| TCGAGTCCAGCCGAGTAACT+TGG | - | chr2_1:59201530-59201549 | None:intergenic | 55.0% | |
| ATAAGCCCTCAAGTTCCCGC+TGG | + | chr2_1:59202566-59202585 | Msa0214650:CDS | 55.0% | |
| CGTTACCAGCGGGAACTTGA+GGG | - | chr2_1:59202574-59202593 | None:intergenic | 55.0% | |
| ACGTTACCAGCGGGAACTTG+AGG | - | chr2_1:59202575-59202594 | None:intergenic | 55.0% | |
| ! | AGTTCCCGCTGGTAACGTTG+AGG | + | chr2_1:59202577-59202596 | Msa0214650:CDS | 55.0% |
| GGAACGAGCAATTGGAGTGC+TGG | + | chr2_1:59202795-59202814 | Msa0214650:CDS | 55.0% | |
| GTGGATCAAAGCCAACCAGG+AGG | + | chr2_1:59202887-59202906 | Msa0214650:CDS | 55.0% | |
| TCTTCATCTCCTCTCCCTCC+TGG | - | chr2_1:59202905-59202924 | None:intergenic | 55.0% | |
| GAACGCATGGAAGGCGGATA+AGG | - | chr2_1:59202990-59203009 | None:intergenic | 55.0% | |
| AATGGCGAACGCATGGAAGG+CGG | - | chr2_1:59202996-59203015 | None:intergenic | 55.0% | |
| GCAAATGGCGAACGCATGGA+AGG | - | chr2_1:59202999-59203018 | None:intergenic | 55.0% | |
| !! | ACTACCGGTGGTGTCATCGC+CGG | - | chr2_1:59200803-59200822 | None:intergenic | 60.0% |
| GTGCCTGCGTTTGCAAACGG+TGG | + | chr2_1:59200938-59200957 | Msa0214650:CDS | 60.0% | |
| GGTTAGACGTGTCGCGGTGT+CGG | - | chr2_1:59201302-59201321 | None:intergenic | 60.0% | |
| ! | ACCTCGGGTTAGACGTGTCG+CGG | - | chr2_1:59201308-59201327 | None:intergenic | 60.0% |
| ! | TGATGGTTTGGCACCAGCCG+AGG | - | chr2_1:59202510-59202529 | None:intergenic | 60.0% |
| CCTGCCTCAACGTTACCAGC+GGG | - | chr2_1:59202584-59202603 | None:intergenic | 60.0% | |
| CCCTGCCTCAACGTTACCAG+CGG | - | chr2_1:59202585-59202604 | None:intergenic | 60.0% | |
| ! | CCGCTGGTAACGTTGAGGCA+GGG | + | chr2_1:59202582-59202601 | Msa0214650:CDS | 60.0% |
| CAAAGCCAACCAGGAGGGAG+AGG | + | chr2_1:59202893-59202912 | Msa0214650:CDS | 60.0% | |
| CATCTCCTCTCCCTCCTGGT+TGG | - | chr2_1:59202901-59202920 | None:intergenic | 60.0% | |
| GCTACCGGCGATGACACCAC+CGG | + | chr2_1:59200796-59200815 | Msa0214650:CDS | 65.0% | |
| CACCACCGGTAGTGCATCGG+AGG | + | chr2_1:59200810-59200829 | Msa0214650:CDS | 65.0% | |
| GTCCTCCGATGCACTACCGG+TGG | - | chr2_1:59200815-59200834 | None:intergenic | 65.0% | |
| ACCGCGACACGTCTAACCCG+AGG | + | chr2_1:59201304-59201323 | Msa0214650:intron | 65.0% | |
| ! | CCCGCTGGTAACGTTGAGGC+AGG | + | chr2_1:59202581-59202600 | Msa0214650:CDS | 65.0% |
| ! | CAGTGGTGGGGAAGGTCGCG+TGG | - | chr2_1:59201864-59201883 | None:intergenic | 70.0% |
| GAAGGTCGCGTGGCCCTGGC+TGG | - | chr2_1:59201854-59201873 | None:intergenic | 75.0% | |
| TGGGGAAGGTCGCGTGGCCC+TGG | - | chr2_1:59201858-59201877 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 59200610 | 59203252 | 59200610 | ID=Msa0214650;Name=Msa0214650 |
| chr2_1 | mRNA | 59200610 | 59203252 | 59200610 | ID=Msa0214650-mRNA-1;Parent=Msa0214650;Name=Msa0214650-mRNA-1;_AED=0.32;_eAED=0.32;_QI=104|1|1|1|0.6|0.33|6|152|367 |
| chr2_1 | exon | 59200610 | 59200675 | 59200610 | ID=Msa0214650-mRNA-1:exon:16299;Parent=Msa0214650-mRNA-1 |
| chr2_1 | exon | 59200698 | 59201035 | 59200698 | ID=Msa0214650-mRNA-1:exon:16300;Parent=Msa0214650-mRNA-1 |
| chr2_1 | exon | 59201855 | 59201942 | 59201855 | ID=Msa0214650-mRNA-1:exon:16301;Parent=Msa0214650-mRNA-1 |
| chr2_1 | exon | 59202102 | 59202231 | 59202102 | ID=Msa0214650-mRNA-1:exon:16302;Parent=Msa0214650-mRNA-1 |
| chr2_1 | exon | 59202469 | 59203106 | 59202469 | ID=Msa0214650-mRNA-1:exon:16303;Parent=Msa0214650-mRNA-1 |
| chr2_1 | exon | 59203153 | 59203252 | 59203153 | ID=Msa0214650-mRNA-1:exon:16304;Parent=Msa0214650-mRNA-1 |
| chr2_1 | five_prime_UTR | 59200610 | 59200675 | 59200610 | ID=Msa0214650-mRNA-1:five_prime_utr;Parent=Msa0214650-mRNA-1 |
| chr2_1 | five_prime_UTR | 59200698 | 59200735 | 59200698 | ID=Msa0214650-mRNA-1:five_prime_utr;Parent=Msa0214650-mRNA-1 |
| chr2_1 | CDS | 59200736 | 59201035 | 59200736 | ID=Msa0214650-mRNA-1:cds;Parent=Msa0214650-mRNA-1 |
| chr2_1 | CDS | 59201855 | 59201942 | 59201855 | ID=Msa0214650-mRNA-1:cds;Parent=Msa0214650-mRNA-1 |
| chr2_1 | CDS | 59202102 | 59202231 | 59202102 | ID=Msa0214650-mRNA-1:cds;Parent=Msa0214650-mRNA-1 |
| chr2_1 | CDS | 59202469 | 59203054 | 59202469 | ID=Msa0214650-mRNA-1:cds;Parent=Msa0214650-mRNA-1 |
| chr2_1 | three_prime_UTR | 59203055 | 59203106 | 59203055 | ID=Msa0214650-mRNA-1:three_prime_utr;Parent=Msa0214650-mRNA-1 |
| chr2_1 | three_prime_UTR | 59203153 | 59203252 | 59203153 | ID=Msa0214650-mRNA-1:three_prime_utr;Parent=Msa0214650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
