Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214770 | PNY00493.1 | 80.627 | 702 | 132 | 2 | 4 | 705 | 3 | 700 | 0.0 | 1182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214770 | sp|Q9SWG3|FAR1_ARATH | 46.197 | 710 | 353 | 6 | 3 | 698 | 8 | 702 | 0.0 | 669 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214770 | A0A2K3NBU0 | 80.627 | 702 | 132 | 2 | 4 | 705 | 3 | 700 | 0.0 | 1182 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0214770 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214770 | MtrunA17_Chr1g0207551 | 50.321 | 624 | 308 | 1 | 33 | 654 | 26 | 649 | 0.0 | 653 |
| Msa0214770 | MtrunA17_Chr2g0329031 | 46.043 | 695 | 351 | 7 | 35 | 718 | 8 | 689 | 0.0 | 640 |
| Msa0214770 | MtrunA17_Chr3g0080351 | 45.122 | 656 | 317 | 4 | 25 | 660 | 57 | 689 | 0.0 | 607 |
| Msa0214770 | MtrunA17_Chr5g0448761 | 39.013 | 669 | 387 | 9 | 28 | 678 | 47 | 712 | 6.29e-166 | 497 |
| Msa0214770 | MtrunA17_Chr2g0296781 | 39.816 | 653 | 374 | 9 | 45 | 684 | 1 | 647 | 1.48e-155 | 469 |
| Msa0214770 | MtrunA17_Chr1g0202341 | 37.640 | 627 | 372 | 7 | 40 | 651 | 50 | 672 | 1.94e-141 | 431 |
| Msa0214770 | MtrunA17_Chr6g0477261 | 41.468 | 545 | 292 | 6 | 157 | 684 | 2 | 536 | 9.53e-138 | 421 |
| Msa0214770 | MtrunA17_Chr5g0441581 | 35.135 | 703 | 404 | 14 | 15 | 691 | 15 | 691 | 3.15e-130 | 402 |
| Msa0214770 | MtrunA17_Chr2g0291581 | 36.174 | 622 | 368 | 9 | 41 | 647 | 71 | 678 | 8.28e-130 | 400 |
| Msa0214770 | MtrunA17_Chr1g0196541 | 38.188 | 563 | 334 | 6 | 45 | 597 | 1 | 559 | 3.63e-129 | 400 |
| Msa0214770 | MtrunA17_Chr5g0440451 | 34.588 | 691 | 376 | 18 | 6 | 655 | 13 | 668 | 1.20e-126 | 400 |
| Msa0214770 | MtrunA17_Chr5g0448511 | 37.748 | 453 | 276 | 2 | 209 | 655 | 11 | 463 | 1.89e-117 | 364 |
| Msa0214770 | MtrunA17_Chr3g0118611 | 40.757 | 449 | 260 | 3 | 210 | 654 | 118 | 564 | 4.84e-113 | 359 |
| Msa0214770 | MtrunA17_Chr2g0291591 | 33.465 | 505 | 335 | 1 | 35 | 539 | 58 | 561 | 5.78e-106 | 335 |
| Msa0214770 | MtrunA17_Chr8g0363841 | 31.691 | 609 | 390 | 9 | 33 | 621 | 9 | 611 | 5.42e-103 | 330 |
| Msa0214770 | MtrunA17_Chr2g0287651 | 32.394 | 568 | 360 | 8 | 43 | 596 | 77 | 634 | 4.94e-101 | 330 |
| Msa0214770 | MtrunA17_Chr2g0287061 | 33.439 | 631 | 349 | 13 | 32 | 643 | 174 | 752 | 4.79e-99 | 323 |
| Msa0214770 | MtrunA17_Chr2g0324011 | 31.317 | 562 | 377 | 5 | 40 | 594 | 9 | 568 | 5.84e-97 | 312 |
| Msa0214770 | MtrunA17_Chr3g0082121 | 30.360 | 695 | 440 | 15 | 1 | 675 | 1 | 671 | 2.45e-95 | 311 |
| Msa0214770 | MtrunA17_Chr6g0458391 | 30.674 | 564 | 358 | 6 | 41 | 594 | 225 | 765 | 1.57e-90 | 300 |
| Msa0214770 | MtrunA17_Chr6g0458391 | 29.891 | 184 | 123 | 3 | 41 | 218 | 91 | 274 | 8.22e-14 | 75.1 |
| Msa0214770 | MtrunA17_Chr1g0198761 | 31.007 | 745 | 459 | 16 | 11 | 718 | 9 | 735 | 6.49e-90 | 298 |
| Msa0214770 | MtrunA17_Chr1g0203721 | 29.359 | 671 | 436 | 9 | 10 | 651 | 24 | 685 | 7.28e-89 | 298 |
| Msa0214770 | MtrunA17_Chr1g0203051 | 30.551 | 599 | 376 | 17 | 8 | 582 | 40 | 622 | 1.29e-82 | 275 |
| Msa0214770 | MtrunA17_Chr2g0276841 | 30.132 | 604 | 385 | 13 | 41 | 624 | 70 | 656 | 1.11e-81 | 274 |
| Msa0214770 | MtrunA17_Chr2g0294841 | 28.393 | 641 | 414 | 13 | 41 | 654 | 45 | 667 | 9.34e-72 | 249 |
| Msa0214770 | MtrunA17_Chr5g0431001 | 33.099 | 426 | 258 | 7 | 41 | 445 | 61 | 480 | 3.40e-63 | 219 |
| Msa0214770 | MtrunA17_Chr2g0290391 | 26.700 | 603 | 400 | 12 | 19 | 592 | 22 | 611 | 4.85e-61 | 218 |
| Msa0214770 | MtrunA17_Chr1g0164591 | 33.442 | 308 | 195 | 3 | 123 | 429 | 10 | 308 | 3.92e-53 | 186 |
| Msa0214770 | MtrunA17_Chr7g0258861 | 33.916 | 286 | 182 | 3 | 40 | 318 | 9 | 294 | 4.74e-47 | 169 |
| Msa0214770 | MtrunA17_Chr7g0233911 | 42.478 | 113 | 59 | 2 | 39 | 146 | 32 | 143 | 2.38e-20 | 90.5 |
| Msa0214770 | MtrunA17_Chr2g0308841 | 26.339 | 224 | 163 | 2 | 370 | 591 | 1 | 224 | 2.54e-20 | 91.7 |
| Msa0214770 | MtrunA17_Chr6g0451441 | 28.708 | 209 | 141 | 3 | 1 | 202 | 40 | 247 | 3.85e-18 | 88.2 |
| Msa0214770 | MtrunA17_Chr2g0329361 | 35.849 | 106 | 62 | 1 | 40 | 139 | 60 | 165 | 5.53e-18 | 84.3 |
| Msa0214770 | MtrunA17_Chr1g0149131 | 30.000 | 110 | 77 | 0 | 315 | 424 | 1 | 110 | 8.51e-16 | 74.3 |
| Msa0214770 | MtrunA17_Chr4g0033611 | 34.513 | 113 | 69 | 2 | 33 | 141 | 68 | 179 | 1.10e-14 | 74.7 |
| Msa0214770 | MtrunA17_Chr3g0078041 | 33.945 | 109 | 67 | 1 | 36 | 139 | 45 | 153 | 4.51e-14 | 72.4 |
| Msa0214770 | MtrunA17_Chr2g0329421 | 35.849 | 106 | 63 | 2 | 40 | 141 | 26 | 130 | 2.90e-13 | 69.7 |
| Msa0214770 | MtrunA17_Chr8g0340801 | 29.630 | 108 | 74 | 1 | 146 | 253 | 2 | 107 | 6.30e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214770 | AT4G15090.1 | 46.197 | 710 | 353 | 6 | 3 | 698 | 8 | 702 | 0.0 | 669 |
| Msa0214770 | AT4G15090.5 | 46.197 | 710 | 353 | 6 | 3 | 698 | 8 | 702 | 0.0 | 669 |
| Msa0214770 | AT4G15090.3 | 46.197 | 710 | 353 | 6 | 3 | 698 | 8 | 702 | 0.0 | 669 |
| Msa0214770 | AT4G15090.2 | 46.197 | 710 | 353 | 6 | 3 | 698 | 8 | 702 | 0.0 | 669 |
| Msa0214770 | AT4G15090.4 | 46.197 | 710 | 353 | 6 | 3 | 698 | 8 | 702 | 0.0 | 669 |
| Msa0214770 | AT3G22170.2 | 45.195 | 666 | 317 | 5 | 14 | 654 | 35 | 677 | 0.0 | 617 |
| Msa0214770 | AT3G22170.1 | 45.195 | 666 | 317 | 5 | 14 | 654 | 35 | 677 | 0.0 | 617 |
| Msa0214770 | AT1G76320.2 | 46.330 | 613 | 321 | 3 | 45 | 656 | 1 | 606 | 0.0 | 592 |
| Msa0214770 | AT1G76320.1 | 46.330 | 613 | 321 | 3 | 45 | 656 | 1 | 606 | 0.0 | 592 |
| Msa0214770 | AT1G76320.4 | 46.330 | 613 | 321 | 3 | 45 | 656 | 1 | 606 | 0.0 | 592 |
| Msa0214770 | AT1G76320.3 | 46.330 | 613 | 321 | 3 | 45 | 656 | 1 | 606 | 0.0 | 591 |
| Msa0214770 | AT2G32250.5 | 41.801 | 622 | 314 | 6 | 44 | 660 | 41 | 619 | 2.11e-164 | 493 |
| Msa0214770 | AT2G32250.6 | 41.801 | 622 | 314 | 6 | 44 | 660 | 41 | 619 | 7.78e-164 | 493 |
| Msa0214770 | AT2G32250.1 | 41.801 | 622 | 314 | 6 | 44 | 660 | 41 | 619 | 7.78e-164 | 493 |
| Msa0214770 | AT2G32250.3 | 41.801 | 622 | 314 | 6 | 44 | 660 | 41 | 619 | 7.78e-164 | 493 |
| Msa0214770 | AT2G32250.2 | 41.801 | 622 | 314 | 6 | 44 | 660 | 41 | 619 | 9.50e-164 | 493 |
| Msa0214770 | AT2G32250.4 | 41.801 | 622 | 314 | 6 | 44 | 660 | 41 | 619 | 9.50e-164 | 493 |
| Msa0214770 | AT2G32250.7 | 41.707 | 621 | 314 | 6 | 45 | 660 | 1 | 578 | 3.86e-163 | 490 |
| Msa0214770 | AT2G32250.8 | 41.707 | 621 | 314 | 6 | 45 | 660 | 1 | 578 | 4.14e-163 | 489 |
| Msa0214770 | AT4G19990.3 | 42.130 | 629 | 308 | 6 | 40 | 647 | 20 | 613 | 1.25e-156 | 473 |
| Msa0214770 | AT4G19990.4 | 42.130 | 629 | 308 | 6 | 40 | 647 | 20 | 613 | 1.25e-156 | 473 |
| Msa0214770 | AT4G38180.1 | 38.268 | 635 | 372 | 6 | 40 | 660 | 72 | 700 | 1.31e-156 | 474 |
| Msa0214770 | AT4G19990.5 | 42.130 | 629 | 308 | 6 | 40 | 647 | 20 | 613 | 1.60e-156 | 472 |
| Msa0214770 | AT4G19990.7 | 42.130 | 629 | 308 | 6 | 40 | 647 | 34 | 627 | 4.53e-156 | 471 |
| Msa0214770 | AT4G19990.6 | 42.130 | 629 | 308 | 6 | 40 | 647 | 20 | 613 | 7.89e-156 | 471 |
| Msa0214770 | AT4G19990.2 | 42.130 | 629 | 308 | 6 | 40 | 647 | 20 | 613 | 7.89e-156 | 471 |
| Msa0214770 | AT4G19990.1 | 41.286 | 591 | 291 | 6 | 78 | 647 | 1 | 556 | 6.14e-142 | 432 |
| Msa0214770 | AT2G27110.2 | 35.463 | 626 | 369 | 10 | 37 | 655 | 45 | 642 | 5.45e-128 | 401 |
| Msa0214770 | AT2G27110.1 | 35.463 | 626 | 369 | 10 | 37 | 655 | 45 | 642 | 5.45e-128 | 401 |
| Msa0214770 | AT1G52520.1 | 33.631 | 672 | 413 | 10 | 2 | 651 | 38 | 698 | 4.97e-126 | 392 |
| Msa0214770 | AT1G80010.1 | 34.665 | 626 | 386 | 9 | 41 | 649 | 95 | 714 | 4.15e-123 | 385 |
| Msa0214770 | AT2G27110.3 | 39.911 | 451 | 262 | 4 | 210 | 655 | 51 | 497 | 1.74e-114 | 362 |
| Msa0214770 | AT3G06250.2 | 32.462 | 650 | 377 | 10 | 18 | 647 | 152 | 759 | 8.20e-107 | 343 |
| Msa0214770 | AT3G06250.2 | 32.381 | 105 | 62 | 1 | 34 | 138 | 21 | 116 | 4.93e-11 | 66.6 |
| Msa0214770 | AT3G06250.1 | 32.462 | 650 | 377 | 10 | 18 | 647 | 152 | 759 | 8.20e-107 | 343 |
| Msa0214770 | AT3G06250.1 | 32.381 | 105 | 62 | 1 | 34 | 138 | 21 | 116 | 4.93e-11 | 66.6 |
| Msa0214770 | AT3G06250.3 | 32.462 | 650 | 377 | 10 | 18 | 647 | 152 | 759 | 8.20e-107 | 343 |
| Msa0214770 | AT3G06250.3 | 32.381 | 105 | 62 | 1 | 34 | 138 | 21 | 116 | 4.93e-11 | 66.6 |
| Msa0214770 | AT5G18960.2 | 32.543 | 633 | 379 | 10 | 22 | 647 | 192 | 783 | 1.48e-105 | 340 |
| Msa0214770 | AT5G18960.2 | 32.773 | 119 | 71 | 1 | 20 | 138 | 22 | 131 | 6.84e-13 | 72.8 |
| Msa0214770 | AT5G18960.1 | 32.543 | 633 | 379 | 10 | 22 | 647 | 192 | 783 | 1.48e-105 | 340 |
| Msa0214770 | AT5G18960.1 | 32.773 | 119 | 71 | 1 | 20 | 138 | 22 | 131 | 6.84e-13 | 72.8 |
| Msa0214770 | AT4G38170.1 | 37.529 | 437 | 256 | 9 | 222 | 649 | 29 | 457 | 2.57e-94 | 304 |
| Msa0214770 | AT1G10240.2 | 27.500 | 600 | 413 | 9 | 5 | 591 | 14 | 604 | 5.67e-78 | 264 |
| Msa0214770 | AT1G10240.1 | 27.500 | 600 | 413 | 9 | 5 | 591 | 14 | 604 | 5.67e-78 | 264 |
| Msa0214770 | AT5G28530.1 | 27.604 | 576 | 382 | 13 | 41 | 592 | 55 | 619 | 6.07e-63 | 223 |
| Msa0214770 | AT5G28530.3 | 27.257 | 576 | 380 | 13 | 41 | 592 | 55 | 615 | 4.91e-62 | 221 |
| Msa0214770 | AT5G28530.2 | 27.257 | 576 | 380 | 13 | 41 | 592 | 55 | 615 | 4.91e-62 | 221 |
| Msa0214770 | AT5G28530.4 | 28.939 | 311 | 214 | 4 | 283 | 592 | 252 | 556 | 3.06e-32 | 133 |
| Msa0214770 | AT5G28530.5 | 28.296 | 311 | 212 | 4 | 283 | 592 | 252 | 552 | 2.50e-31 | 130 |
| Msa0214770 | AT3G07500.1 | 38.235 | 136 | 77 | 3 | 12 | 140 | 1 | 136 | 8.44e-16 | 77.4 |
| Msa0214770 | AT3G59470.3 | 32.117 | 137 | 87 | 3 | 8 | 141 | 40 | 173 | 1.69e-15 | 77.4 |
| Msa0214770 | AT3G59470.1 | 32.117 | 137 | 87 | 3 | 8 | 141 | 40 | 173 | 1.69e-15 | 77.4 |
| Msa0214770 | AT3G59470.2 | 32.117 | 137 | 87 | 3 | 8 | 141 | 52 | 185 | 2.13e-15 | 77.4 |
| Msa0214770 | AT2G43280.1 | 32.692 | 104 | 65 | 1 | 40 | 138 | 21 | 124 | 1.74e-13 | 70.5 |
| Msa0214770 | AT4G12850.4 | 35.455 | 110 | 67 | 2 | 30 | 138 | 3 | 109 | 1.83e-13 | 68.6 |
| Msa0214770 | AT4G12850.2 | 36.000 | 100 | 63 | 1 | 40 | 138 | 10 | 109 | 2.68e-13 | 68.2 |
| Msa0214770 | AT4G12850.1 | 36.000 | 100 | 63 | 1 | 40 | 138 | 10 | 109 | 4.82e-13 | 68.6 |
Find 109 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCCACTCTTTATTCTTCT+TGG | 0.122394 | 2_1:-59405950 | None:intergenic |
| CAAAATCGATGTCGAGAATT+TGG | 0.186476 | 2_1:-59404918 | None:intergenic |
| AAAGAATTTGTGATGGAAAA+TGG | 0.198140 | 2_1:+59404253 | Msa0214770:CDS |
| AAAATATAAAGTTGCTTTAC+AGG | 0.207491 | 2_1:+59405268 | Msa0214770:CDS |
| AACGCCGATCTTTATCTAAA+TGG | 0.218779 | 2_1:-59404488 | None:intergenic |
| TCATATGGTTGATGAAAATA+TGG | 0.223114 | 2_1:+59404811 | Msa0214770:CDS |
| GAAATTTCAAGTTGAAGTTT+TGG | 0.239158 | 2_1:+59405409 | Msa0214770:CDS |
| TTCATATCCTCCATATTCTT+TGG | 0.259642 | 2_1:-59404433 | None:intergenic |
| TATGCTAAGTCAGTTGGATT+TGG | 0.280799 | 2_1:+59404078 | Msa0214770:CDS |
| CAACCATATGAAAGTGTTCT+TGG | 0.289573 | 2_1:-59404799 | None:intergenic |
| TTCATGTACCGTTGATTTAG+AGG | 0.293148 | 2_1:+59403981 | Msa0214770:CDS |
| CACTTTCAATCAAGGTTACT+TGG | 0.297091 | 2_1:+59404753 | Msa0214770:CDS |
| CGGCGTTTGGCTTTAGAATC+AGG | 0.298007 | 2_1:+59404504 | Msa0214770:CDS |
| GCCACAATGGCCAAAGAATA+TGG | 0.298617 | 2_1:+59404423 | Msa0214770:CDS |
| GAGCTTTATTGATTCCTCTA+TGG | 0.299611 | 2_1:-59404344 | None:intergenic |
| ATGTAAGAAAACTACATTAA+AGG | 0.307863 | 2_1:+59405235 | Msa0214770:CDS |
| TGATTGTTTACACCAATAAA+AGG | 0.319537 | 2_1:-59404732 | None:intergenic |
| TTGATCTATTTGGAGATGAT+TGG | 0.321918 | 2_1:+59405090 | Msa0214770:CDS |
| ATAATGTGTCATACCATTCT+TGG | 0.328571 | 2_1:-59406178 | None:intergenic |
| TCAAACTCCATTCCAATGTT+AGG | 0.334083 | 2_1:-59404021 | None:intergenic |
| AGAGAAGACTATCAAGAGTT+TGG | 0.342771 | 2_1:+59404651 | Msa0214770:CDS |
| TGATCAGTTATGATTGCATT+TGG | 0.346344 | 2_1:-59404858 | None:intergenic |
| ATGCTAAGTCAGTTGGATTT+GGG | 0.354359 | 2_1:+59404079 | Msa0214770:CDS |
| AGGTATTTACTGCTTCTCTT+TGG | 0.367389 | 2_1:-59406120 | None:intergenic |
| AATGTATCATTCATGTAAAC+AGG | 0.389787 | 2_1:-59405149 | None:intergenic |
| GGCACAAGCAACCTGTTCTT+AGG | 0.392197 | 2_1:+59405330 | Msa0214770:CDS |
| GCTATTGAATTTCTCGAAGA+AGG | 0.413131 | 2_1:+59405758 | Msa0214770:CDS |
| CCTAAAAGAGCAAATACAAA+AGG | 0.426549 | 2_1:+59405923 | Msa0214770:CDS |
| AAAACATGACTAAGCTTCTC+AGG | 0.436303 | 2_1:-59404966 | None:intergenic |
| TCTTTGGCATATACTTAGAA+AGG | 0.437001 | 2_1:+59404941 | Msa0214770:CDS |
| AATGGAGAACATTCTATTGA+TGG | 0.437522 | 2_1:+59403919 | Msa0214770:CDS |
| ATGCTTGCTTCTAACATCCT+TGG | 0.437672 | 2_1:-59405669 | None:intergenic |
| ATTGACATTTGCTTCTCAAA+AGG | 0.437914 | 2_1:-59405362 | None:intergenic |
| TTTAGATAAAGATCGGCGTT+TGG | 0.438381 | 2_1:+59404491 | Msa0214770:CDS |
| ATATGATTCTTTATATCAAA+AGG | 0.443423 | 2_1:+59405736 | Msa0214770:CDS |
| TAAACAATCACTTTCAATCA+AGG | 0.446002 | 2_1:+59404745 | Msa0214770:CDS |
| TCTTTGTAGACATTCATTGA+TGG | 0.446762 | 2_1:+59405589 | Msa0214770:CDS |
| ATATGAAGAACGTGAACATT+GGG | 0.447625 | 2_1:+59405124 | Msa0214770:CDS |
| GGAAAATAATGTGCATATGC+TGG | 0.447627 | 2_1:-59404318 | None:intergenic |
| GAATTAATGGAAGTTGTTGA+TGG | 0.448629 | 2_1:+59403895 | None:intergenic |
| ATATGAAAACATTGGTTGCT+TGG | 0.449564 | 2_1:+59404449 | Msa0214770:CDS |
| TTCACCATTGAGAACATTTG+AGG | 0.450893 | 2_1:-59406140 | None:intergenic |
| AGAAGATGTGTGCTCTAGTA+AGG | 0.464829 | 2_1:+59405709 | Msa0214770:CDS |
| AGACCAAGAACACTTTCATA+TGG | 0.466099 | 2_1:+59404796 | Msa0214770:CDS |
| AACAACAATTTGAAGATAAG+TGG | 0.469819 | 2_1:+59405048 | Msa0214770:CDS |
| TCCATATTCTTTGGCCATTG+TGG | 0.472191 | 2_1:-59404424 | None:intergenic |
| AGGAAAGTCATCAGGGTTGA+AGG | 0.473626 | 2_1:+59406278 | Msa0214770:intron |
| TCAATTGCATAAAAGAATCC+TGG | 0.481905 | 2_1:-59404576 | None:intergenic |
| AAAATATGGCTTAGAGCAAT+GGG | 0.483728 | 2_1:+59404825 | Msa0214770:CDS |
| AACAGCTGCATTGCCAAGAA+TGG | 0.484562 | 2_1:+59406165 | Msa0214770:CDS |
| AACAATGTGCAACTATCAAC+CGG | 0.485541 | 2_1:+59405837 | Msa0214770:CDS |
| ACACCAATAAAAGGAGCAAA+TGG | 0.486343 | 2_1:-59404723 | None:intergenic |
| TTCTTAAAATATAGTGTGAT+GGG | 0.486629 | 2_1:-59405640 | None:intergenic |
| AAAGTCGAAAATTGTAAAAG+TGG | 0.487862 | 2_1:-59405480 | None:intergenic |
| GGTGATGGAGTCCTAAGAAC+AGG | 0.491171 | 2_1:-59405341 | None:intergenic |
| CTAAAAGAGCAAATACAAAA+GGG | 0.494734 | 2_1:+59405924 | Msa0214770:CDS |
| CGTGTTAAAAGAATTTGTGA+TGG | 0.498075 | 2_1:+59404246 | Msa0214770:CDS |
| ACTCATTATGCTAAGTCAGT+TGG | 0.500199 | 2_1:+59404072 | Msa0214770:CDS |
| AGGAGATGCAAATGCAATGT+TGG | 0.501317 | 2_1:+59404524 | Msa0214770:CDS |
| ATGGAAGTTGTTGATGGGAA+TGG | 0.507690 | 2_1:+59403901 | Msa0214770:CDS |
| AATACCTCAAATGTTCTCAA+TGG | 0.509038 | 2_1:+59406136 | Msa0214770:CDS |
| ACATATGCATATATAAGTCT+TGG | 0.509357 | 2_1:+59405021 | Msa0214770:CDS |
| TGAAGATAAGTGGCATGAAA+TGG | 0.513482 | 2_1:+59405058 | Msa0214770:CDS |
| AGTTATGCTTGCACAAGATA+CGG | 0.514711 | 2_1:+59404156 | Msa0214770:CDS |
| TCAAAGTTTCTTCAAGTGCA+TGG | 0.515683 | 2_1:-59405814 | None:intergenic |
| TATATGAAGAACGTGAACAT+TGG | 0.518179 | 2_1:+59405123 | Msa0214770:CDS |
| AAATCCACGTCCTTGTTTGA+AGG | 0.523815 | 2_1:+59404203 | Msa0214770:CDS |
| TTGATGGCATTCCAAGCTGT+TGG | 0.525056 | 2_1:+59405605 | Msa0214770:CDS |
| GAAAATATGGCTTAGAGCAA+TGG | 0.525317 | 2_1:+59404824 | Msa0214770:CDS |
| CTTCTTAAAATATAGTGTGA+TGG | 0.527660 | 2_1:-59405641 | None:intergenic |
| ATTGAAACTTTGCACCATGT+TGG | 0.528985 | 2_1:+59404378 | Msa0214770:CDS |
| TGCTTGTTCTCACTCCAACA+TGG | 0.537475 | 2_1:-59404392 | None:intergenic |
| ATTTGCTTCTCAAAAGGTGA+TGG | 0.540522 | 2_1:-59405356 | None:intergenic |
| TCAGTTATGATTGCATTTGG+AGG | 0.543378 | 2_1:-59404855 | None:intergenic |
| TCCACGTCCTTGTTTGAAGG+TGG | 0.544839 | 2_1:+59404206 | Msa0214770:CDS |
| AATTAATGGAAGTTGTTGAT+GGG | 0.547188 | 2_1:+59403896 | None:intergenic |
| AATGAAAGAGGCTATTAAAG+AGG | 0.549415 | 2_1:+59404890 | Msa0214770:CDS |
| GAAACCATTTAGATAAAGAT+CGG | 0.550718 | 2_1:+59404484 | Msa0214770:CDS |
| TTATTGATTCCTCTATGGCA+AGG | 0.554774 | 2_1:-59404339 | None:intergenic |
| ATGGAGAACATTCTATTGAT+GGG | 0.556834 | 2_1:+59403920 | Msa0214770:CDS |
| TATGGAGGATATGAAAACAT+TGG | 0.557417 | 2_1:+59404441 | Msa0214770:CDS |
| CAACACAGACACCAACAGCT+TGG | 0.558938 | 2_1:-59405616 | None:intergenic |
| CCACGTCCTTGTTTGAAGGT+GGG | 0.564321 | 2_1:+59404207 | Msa0214770:CDS |
| AGGATAGAGAAGAGGCGGAA+AGG | 0.566665 | 2_1:+59405288 | Msa0214770:CDS |
| AGAGTGTGATGTCTCGAAGA+AGG | 0.573703 | 2_1:+59405526 | Msa0214770:CDS |
| TGCTTTACAGGATAGAGAAG+AGG | 0.576377 | 2_1:+59405280 | Msa0214770:CDS |
| TGCAATTGATATGGATGATG+AGG | 0.581691 | 2_1:+59404590 | Msa0214770:CDS |
| TCAAGATAGAGCAATGAAAG+AGG | 0.585891 | 2_1:+59404878 | Msa0214770:CDS |
| TTGTTTGAAGGTGGGATGTG+AGG | 0.585943 | 2_1:+59404215 | Msa0214770:CDS |
| CCCACCTTCAAACAAGGACG+TGG | 0.589716 | 2_1:-59404207 | None:intergenic |
| TCACATCCCACCTTCAAACA+AGG | 0.596792 | 2_1:-59404213 | None:intergenic |
| TCAAGAACCTAACATTGGAA+TGG | 0.600467 | 2_1:+59404014 | Msa0214770:CDS |
| ATAAAGAGTGGGATCGAGAG+AGG | 0.602973 | 2_1:+59405959 | Msa0214770:CDS |
| GGTGGTCAAGAACCTAACAT+TGG | 0.606305 | 2_1:+59404009 | Msa0214770:CDS |
| AGATAAGTGGCATGAAATGG+TGG | 0.607920 | 2_1:+59405061 | Msa0214770:CDS |
| GAATGAAGAGCAAGTTGTCA+AGG | 0.614810 | 2_1:+59403942 | Msa0214770:CDS |
| ACCGTTAGCCTCTAAATCAA+CGG | 0.614838 | 2_1:-59403989 | None:intergenic |
| TTAGAAGCAAGCATCATACA+AGG | 0.616240 | 2_1:+59405678 | Msa0214770:CDS |
| AAAATCGACAAGGAAAACGT+TGG | 0.622612 | 2_1:+59405866 | Msa0214770:CDS |
| TAAAAGAGCAAATACAAAAG+GGG | 0.623948 | 2_1:+59405925 | Msa0214770:CDS |
| ACCGTTGATTTAGAGGCTAA+CGG | 0.628314 | 2_1:+59403988 | Msa0214770:CDS |
| CTCCAAGAAGAATAAAGAGT+GGG | 0.644223 | 2_1:+59405948 | Msa0214770:CDS |
| CCGGTCTTTGAAAATCGACA+AGG | 0.646121 | 2_1:+59405856 | Msa0214770:CDS |
| TTTACAGGATAGAGAAGAGG+CGG | 0.651231 | 2_1:+59405283 | Msa0214770:CDS |
| ATATGGCTTAGAGCAATGGG+TGG | 0.669849 | 2_1:+59404828 | Msa0214770:CDS |
| GCAATTGATATGGATGATGA+GGG | 0.673224 | 2_1:+59404591 | Msa0214770:CDS |
| GCTCCAAGAAGAATAAAGAG+TGG | 0.689620 | 2_1:+59405947 | Msa0214770:CDS |
| ACAATGGCCAAAGAATATGG+AGG | 0.745699 | 2_1:+59404426 | Msa0214770:CDS |
| GTTGATTTAGAGGCTAACGG+TGG | 0.762259 | 2_1:+59403991 | Msa0214770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATGATTCTTTATATCAAA+AGG | + | chr2_1:59405736-59405755 | Msa0214770:CDS | 15.0% |
| !! | ATATGATTCTTTATATCAAA+AGG | + | chr2_1:59405736-59405755 | Msa0214770:CDS | 15.0% |
| !!! | ATTCTTTTATGCAATTGATA+TGG | + | chr2_1:59404581-59404600 | Msa0214770:CDS | 20.0% |
| !!! | TCGTATGAAAAATGTATTTT+GGG | + | chr2_1:59404614-59404633 | Msa0214770:CDS | 20.0% |
| !!! | TACATGAATGATACATTTTT+TGG | + | chr2_1:59405155-59405174 | Msa0214770:CDS | 20.0% |
| !! | ATGTAAGAAAACTACATTAA+AGG | + | chr2_1:59405235-59405254 | Msa0214770:CDS | 20.0% |
| !!! | AAAATATAAAGTTGCTTTAC+AGG | + | chr2_1:59405268-59405287 | Msa0214770:CDS | 20.0% |
| !!! | AAATTTCAAGTTGAAGTTTT+GGG | + | chr2_1:59405410-59405429 | Msa0214770:CDS | 20.0% |
| !! | TTCTTAAAATATAGTGTGAT+GGG | - | chr2_1:59405643-59405662 | None:intergenic | 20.0% |
| !! | ATCTAGTTGTAAAGTAAAAA+AGG | + | chr2_1:59405994-59406013 | Msa0214770:CDS | 20.0% |
| !!! | TTTTGTTTTCTTATTTTCAC+AGG | + | chr2_1:59406258-59406277 | Msa0214770:intron | 20.0% |
| !!! | ATTCTTTTATGCAATTGATA+TGG | + | chr2_1:59404581-59404600 | Msa0214770:CDS | 20.0% |
| !!! | TCGTATGAAAAATGTATTTT+GGG | + | chr2_1:59404614-59404633 | Msa0214770:CDS | 20.0% |
| !!! | TACATGAATGATACATTTTT+TGG | + | chr2_1:59405155-59405174 | Msa0214770:CDS | 20.0% |
| !! | ATGTAAGAAAACTACATTAA+AGG | + | chr2_1:59405235-59405254 | Msa0214770:CDS | 20.0% |
| !!! | AAAATATAAAGTTGCTTTAC+AGG | + | chr2_1:59405268-59405287 | Msa0214770:CDS | 20.0% |
| !!! | AAATTTCAAGTTGAAGTTTT+GGG | + | chr2_1:59405410-59405429 | Msa0214770:CDS | 20.0% |
| !! | TTCTTAAAATATAGTGTGAT+GGG | - | chr2_1:59405643-59405662 | None:intergenic | 20.0% |
| !! | ATCTAGTTGTAAAGTAAAAA+AGG | + | chr2_1:59405994-59406013 | Msa0214770:CDS | 20.0% |
| !!! | TTTTGTTTTCTTATTTTCAC+AGG | + | chr2_1:59406258-59406277 | Msa0214770:intron | 20.0% |
| !! | AAAGAATTTGTGATGGAAAA+TGG | + | chr2_1:59404253-59404272 | Msa0214770:CDS | 25.0% |
| ! | GAAACCATTTAGATAAAGAT+CGG | + | chr2_1:59404484-59404503 | Msa0214770:CDS | 25.0% |
| !! | GTCGTATGAAAAATGTATTT+TGG | + | chr2_1:59404613-59404632 | Msa0214770:CDS | 25.0% |
| !!! | TATGAAAAATGTATTTTGGG+TGG | + | chr2_1:59404617-59404636 | Msa0214770:CDS | 25.0% |
| ! | TGATTGTTTACACCAATAAA+AGG | - | chr2_1:59404735-59404754 | None:intergenic | 25.0% |
| ! | TAAACAATCACTTTCAATCA+AGG | + | chr2_1:59404745-59404764 | Msa0214770:CDS | 25.0% |
| !!! | TCATATGGTTGATGAAAATA+TGG | + | chr2_1:59404811-59404830 | Msa0214770:CDS | 25.0% |
| ! | ACATATGCATATATAAGTCT+TGG | + | chr2_1:59405021-59405040 | Msa0214770:CDS | 25.0% |
| ! | AACAACAATTTGAAGATAAG+TGG | + | chr2_1:59405048-59405067 | Msa0214770:CDS | 25.0% |
| ! | GTGGAAAAATTTGATCTATT+TGG | + | chr2_1:59405080-59405099 | Msa0214770:CDS | 25.0% |
| ! | AATGTATCATTCATGTAAAC+AGG | - | chr2_1:59405152-59405171 | None:intergenic | 25.0% |
| !!! | ATGAATGATACATTTTTTGG+TGG | + | chr2_1:59405158-59405177 | Msa0214770:CDS | 25.0% |
| !!! | GAAATTTCAAGTTGAAGTTT+TGG | + | chr2_1:59405409-59405428 | Msa0214770:CDS | 25.0% |
| ! | AAAGTCGAAAATTGTAAAAG+TGG | - | chr2_1:59405483-59405502 | None:intergenic | 25.0% |
| ! | CTTCTTAAAATATAGTGTGA+TGG | - | chr2_1:59405644-59405663 | None:intergenic | 25.0% |
| !!! | CACACTATATTTTAAGAAGA+TGG | + | chr2_1:59405645-59405664 | Msa0214770:CDS | 25.0% |
| ! | CTAAAAGAGCAAATACAAAA+GGG | + | chr2_1:59405924-59405943 | Msa0214770:CDS | 25.0% |
| ! | TAAAAGAGCAAATACAAAAG+GGG | + | chr2_1:59405925-59405944 | Msa0214770:CDS | 25.0% |
| !! | AAAGAATTTGTGATGGAAAA+TGG | + | chr2_1:59404253-59404272 | Msa0214770:CDS | 25.0% |
| ! | GAAACCATTTAGATAAAGAT+CGG | + | chr2_1:59404484-59404503 | Msa0214770:CDS | 25.0% |
| !! | GTCGTATGAAAAATGTATTT+TGG | + | chr2_1:59404613-59404632 | Msa0214770:CDS | 25.0% |
| !!! | TATGAAAAATGTATTTTGGG+TGG | + | chr2_1:59404617-59404636 | Msa0214770:CDS | 25.0% |
| ! | TGATTGTTTACACCAATAAA+AGG | - | chr2_1:59404735-59404754 | None:intergenic | 25.0% |
| ! | TAAACAATCACTTTCAATCA+AGG | + | chr2_1:59404745-59404764 | Msa0214770:CDS | 25.0% |
| !!! | TCATATGGTTGATGAAAATA+TGG | + | chr2_1:59404811-59404830 | Msa0214770:CDS | 25.0% |
| ! | ACATATGCATATATAAGTCT+TGG | + | chr2_1:59405021-59405040 | Msa0214770:CDS | 25.0% |
| ! | AACAACAATTTGAAGATAAG+TGG | + | chr2_1:59405048-59405067 | Msa0214770:CDS | 25.0% |
| ! | GTGGAAAAATTTGATCTATT+TGG | + | chr2_1:59405080-59405099 | Msa0214770:CDS | 25.0% |
| ! | AATGTATCATTCATGTAAAC+AGG | - | chr2_1:59405152-59405171 | None:intergenic | 25.0% |
| !!! | ATGAATGATACATTTTTTGG+TGG | + | chr2_1:59405158-59405177 | Msa0214770:CDS | 25.0% |
| !!! | GAAATTTCAAGTTGAAGTTT+TGG | + | chr2_1:59405409-59405428 | Msa0214770:CDS | 25.0% |
| ! | AAAGTCGAAAATTGTAAAAG+TGG | - | chr2_1:59405483-59405502 | None:intergenic | 25.0% |
| ! | CTTCTTAAAATATAGTGTGA+TGG | - | chr2_1:59405644-59405663 | None:intergenic | 25.0% |
| !!! | CACACTATATTTTAAGAAGA+TGG | + | chr2_1:59405645-59405664 | Msa0214770:CDS | 25.0% |
| ! | CTAAAAGAGCAAATACAAAA+GGG | + | chr2_1:59405924-59405943 | Msa0214770:CDS | 25.0% |
| ! | TAAAAGAGCAAATACAAAAG+GGG | + | chr2_1:59405925-59405944 | Msa0214770:CDS | 25.0% |
| AATGGAGAACATTCTATTGA+TGG | + | chr2_1:59403919-59403938 | Msa0214770:CDS | 30.0% | |
| ATGGAGAACATTCTATTGAT+GGG | + | chr2_1:59403920-59403939 | Msa0214770:CDS | 30.0% | |
| CGTGTTAAAAGAATTTGTGA+TGG | + | chr2_1:59404246-59404265 | Msa0214770:CDS | 30.0% | |
| ! | AAGCAAAATTTTTGCCACAA+TGG | + | chr2_1:59404410-59404429 | Msa0214770:CDS | 30.0% |
| TTCATATCCTCCATATTCTT+TGG | - | chr2_1:59404436-59404455 | None:intergenic | 30.0% | |
| TATGGAGGATATGAAAACAT+TGG | + | chr2_1:59404441-59404460 | Msa0214770:CDS | 30.0% | |
| ! | ATATGAAAACATTGGTTGCT+TGG | + | chr2_1:59404449-59404468 | Msa0214770:CDS | 30.0% |
| TCAATTGCATAAAAGAATCC+TGG | - | chr2_1:59404579-59404598 | None:intergenic | 30.0% | |
| AAAATATGGCTTAGAGCAAT+GGG | + | chr2_1:59404825-59404844 | Msa0214770:CDS | 30.0% | |
| TGATCAGTTATGATTGCATT+TGG | - | chr2_1:59404861-59404880 | None:intergenic | 30.0% | |
| AATGAAAGAGGCTATTAAAG+AGG | + | chr2_1:59404890-59404909 | Msa0214770:CDS | 30.0% | |
| TCTTTGGCATATACTTAGAA+AGG | + | chr2_1:59404941-59404960 | Msa0214770:CDS | 30.0% | |
| ! | AGAAGCTTAGTCATGTTTTA+AGG | + | chr2_1:59404970-59404989 | Msa0214770:CDS | 30.0% |
| !! | GAAGCTTAGTCATGTTTTAA+GGG | + | chr2_1:59404971-59404990 | Msa0214770:CDS | 30.0% |
| TTGATCTATTTGGAGATGAT+TGG | + | chr2_1:59405090-59405109 | Msa0214770:CDS | 30.0% | |
| TATATGAAGAACGTGAACAT+TGG | + | chr2_1:59405123-59405142 | Msa0214770:CDS | 30.0% | |
| ATATGAAGAACGTGAACATT+GGG | + | chr2_1:59405124-59405143 | Msa0214770:CDS | 30.0% | |
| ATTGACATTTGCTTCTCAAA+AGG | - | chr2_1:59405365-59405384 | None:intergenic | 30.0% | |
| !!! | TGTCGCTTTTTTGAGTATAA+TGG | + | chr2_1:59405563-59405582 | Msa0214770:CDS | 30.0% |
| !!! | GTCGCTTTTTTGAGTATAAT+GGG | + | chr2_1:59405564-59405583 | Msa0214770:CDS | 30.0% |
| TCTTTGTAGACATTCATTGA+TGG | + | chr2_1:59405589-59405608 | Msa0214770:CDS | 30.0% | |
| !! | TATTTTAAGAAGATGGACCA+AGG | + | chr2_1:59405652-59405671 | Msa0214770:CDS | 30.0% |
| ! | CCTTTTGTATTTGCTCTTTT+AGG | - | chr2_1:59405926-59405945 | None:intergenic | 30.0% |
| CCTAAAAGAGCAAATACAAA+AGG | + | chr2_1:59405923-59405942 | Msa0214770:CDS | 30.0% | |
| AATACCTCAAATGTTCTCAA+TGG | + | chr2_1:59406136-59406155 | Msa0214770:CDS | 30.0% | |
| ATAATGTGTCATACCATTCT+TGG | - | chr2_1:59406181-59406200 | None:intergenic | 30.0% | |
| TGGTATGACACATTATTCTT+AGG | + | chr2_1:59406185-59406204 | Msa0214770:intron | 30.0% | |
| AATGGAGAACATTCTATTGA+TGG | + | chr2_1:59403919-59403938 | Msa0214770:CDS | 30.0% | |
| ATGGAGAACATTCTATTGAT+GGG | + | chr2_1:59403920-59403939 | Msa0214770:CDS | 30.0% | |
| CGTGTTAAAAGAATTTGTGA+TGG | + | chr2_1:59404246-59404265 | Msa0214770:CDS | 30.0% | |
| ! | AAGCAAAATTTTTGCCACAA+TGG | + | chr2_1:59404410-59404429 | Msa0214770:CDS | 30.0% |
| TTCATATCCTCCATATTCTT+TGG | - | chr2_1:59404436-59404455 | None:intergenic | 30.0% | |
| TATGGAGGATATGAAAACAT+TGG | + | chr2_1:59404441-59404460 | Msa0214770:CDS | 30.0% | |
| ! | ATATGAAAACATTGGTTGCT+TGG | + | chr2_1:59404449-59404468 | Msa0214770:CDS | 30.0% |
| TCAATTGCATAAAAGAATCC+TGG | - | chr2_1:59404579-59404598 | None:intergenic | 30.0% | |
| AAAATATGGCTTAGAGCAAT+GGG | + | chr2_1:59404825-59404844 | Msa0214770:CDS | 30.0% | |
| TGATCAGTTATGATTGCATT+TGG | - | chr2_1:59404861-59404880 | None:intergenic | 30.0% | |
| AATGAAAGAGGCTATTAAAG+AGG | + | chr2_1:59404890-59404909 | Msa0214770:CDS | 30.0% | |
| TCTTTGGCATATACTTAGAA+AGG | + | chr2_1:59404941-59404960 | Msa0214770:CDS | 30.0% | |
| ! | AGAAGCTTAGTCATGTTTTA+AGG | + | chr2_1:59404970-59404989 | Msa0214770:CDS | 30.0% |
| !! | GAAGCTTAGTCATGTTTTAA+GGG | + | chr2_1:59404971-59404990 | Msa0214770:CDS | 30.0% |
| TTGATCTATTTGGAGATGAT+TGG | + | chr2_1:59405090-59405109 | Msa0214770:CDS | 30.0% | |
| TATATGAAGAACGTGAACAT+TGG | + | chr2_1:59405123-59405142 | Msa0214770:CDS | 30.0% | |
| ATATGAAGAACGTGAACATT+GGG | + | chr2_1:59405124-59405143 | Msa0214770:CDS | 30.0% | |
| ATTGACATTTGCTTCTCAAA+AGG | - | chr2_1:59405365-59405384 | None:intergenic | 30.0% | |
| !!! | TGTCGCTTTTTTGAGTATAA+TGG | + | chr2_1:59405563-59405582 | Msa0214770:CDS | 30.0% |
| !!! | GTCGCTTTTTTGAGTATAAT+GGG | + | chr2_1:59405564-59405583 | Msa0214770:CDS | 30.0% |
| TCTTTGTAGACATTCATTGA+TGG | + | chr2_1:59405589-59405608 | Msa0214770:CDS | 30.0% | |
| !! | TATTTTAAGAAGATGGACCA+AGG | + | chr2_1:59405652-59405671 | Msa0214770:CDS | 30.0% |
| ! | CCTTTTGTATTTGCTCTTTT+AGG | - | chr2_1:59405926-59405945 | None:intergenic | 30.0% |
| CCTAAAAGAGCAAATACAAA+AGG | + | chr2_1:59405923-59405942 | Msa0214770:CDS | 30.0% | |
| AATACCTCAAATGTTCTCAA+TGG | + | chr2_1:59406136-59406155 | Msa0214770:CDS | 30.0% | |
| ATAATGTGTCATACCATTCT+TGG | - | chr2_1:59406181-59406200 | None:intergenic | 30.0% | |
| TGGTATGACACATTATTCTT+AGG | + | chr2_1:59406185-59406204 | Msa0214770:intron | 30.0% | |
| !! | TTCATGTACCGTTGATTTAG+AGG | + | chr2_1:59403981-59404000 | Msa0214770:CDS | 35.0% |
| TCAAGAACCTAACATTGGAA+TGG | + | chr2_1:59404014-59404033 | Msa0214770:CDS | 35.0% | |
| TCAAACTCCATTCCAATGTT+AGG | - | chr2_1:59404024-59404043 | None:intergenic | 35.0% | |
| ACTCATTATGCTAAGTCAGT+TGG | + | chr2_1:59404072-59404091 | Msa0214770:CDS | 35.0% | |
| TATGCTAAGTCAGTTGGATT+TGG | + | chr2_1:59404078-59404097 | Msa0214770:CDS | 35.0% | |
| ATGCTAAGTCAGTTGGATTT+GGG | + | chr2_1:59404079-59404098 | Msa0214770:CDS | 35.0% | |
| AGTTATGCTTGCACAAGATA+CGG | + | chr2_1:59404156-59404175 | Msa0214770:CDS | 35.0% | |
| GGAAAATAATGTGCATATGC+TGG | - | chr2_1:59404321-59404340 | None:intergenic | 35.0% | |
| ! | CATTATTTTCCTTGCCATAG+AGG | + | chr2_1:59404330-59404349 | Msa0214770:CDS | 35.0% |
| !! | TTATTGATTCCTCTATGGCA+AGG | - | chr2_1:59404342-59404361 | None:intergenic | 35.0% |
| !! | GAGCTTTATTGATTCCTCTA+TGG | - | chr2_1:59404347-59404366 | None:intergenic | 35.0% |
| ATTGAAACTTTGCACCATGT+TGG | + | chr2_1:59404378-59404397 | Msa0214770:CDS | 35.0% | |
| AACGCCGATCTTTATCTAAA+TGG | - | chr2_1:59404491-59404510 | None:intergenic | 35.0% | |
| TTTAGATAAAGATCGGCGTT+TGG | + | chr2_1:59404491-59404510 | Msa0214770:CDS | 35.0% | |
| CTCATGCAAGAAAAAAATCC+AGG | + | chr2_1:59404558-59404577 | Msa0214770:CDS | 35.0% | |
| TGCAATTGATATGGATGATG+AGG | + | chr2_1:59404590-59404609 | Msa0214770:CDS | 35.0% | |
| GCAATTGATATGGATGATGA+GGG | + | chr2_1:59404591-59404610 | Msa0214770:CDS | 35.0% | |
| AGAGAAGACTATCAAGAGTT+TGG | + | chr2_1:59404651-59404670 | Msa0214770:CDS | 35.0% | |
| !! | ATGCCATTTGCTCCTTTTAT+TGG | + | chr2_1:59404720-59404739 | Msa0214770:CDS | 35.0% |
| ACACCAATAAAAGGAGCAAA+TGG | - | chr2_1:59404726-59404745 | None:intergenic | 35.0% | |
| CACTTTCAATCAAGGTTACT+TGG | + | chr2_1:59404753-59404772 | Msa0214770:CDS | 35.0% | |
| AGACCAAGAACACTTTCATA+TGG | + | chr2_1:59404796-59404815 | Msa0214770:CDS | 35.0% | |
| !! | CAACCATATGAAAGTGTTCT+TGG | - | chr2_1:59404802-59404821 | None:intergenic | 35.0% |
| GAAAATATGGCTTAGAGCAA+TGG | + | chr2_1:59404824-59404843 | Msa0214770:CDS | 35.0% | |
| TCAGTTATGATTGCATTTGG+AGG | - | chr2_1:59404858-59404877 | None:intergenic | 35.0% | |
| TCAAGATAGAGCAATGAAAG+AGG | + | chr2_1:59404878-59404897 | Msa0214770:CDS | 35.0% | |
| CAAAATCGATGTCGAGAATT+TGG | - | chr2_1:59404921-59404940 | None:intergenic | 35.0% | |
| AAAACATGACTAAGCTTCTC+AGG | - | chr2_1:59404969-59404988 | None:intergenic | 35.0% | |
| TGAAGATAAGTGGCATGAAA+TGG | + | chr2_1:59405058-59405077 | Msa0214770:CDS | 35.0% | |
| ATTTGCTTCTCAAAAGGTGA+TGG | - | chr2_1:59405359-59405378 | None:intergenic | 35.0% | |
| !!! | GTTGAAGTTTTGGGATTATC+TGG | + | chr2_1:59405419-59405438 | Msa0214770:CDS | 35.0% |
| TTAGAAGCAAGCATCATACA+AGG | + | chr2_1:59405678-59405697 | Msa0214770:CDS | 35.0% | |
| GCTATTGAATTTCTCGAAGA+AGG | + | chr2_1:59405758-59405777 | Msa0214770:CDS | 35.0% | |
| TCAAAGTTTCTTCAAGTGCA+TGG | - | chr2_1:59405817-59405836 | None:intergenic | 35.0% | |
| AACAATGTGCAACTATCAAC+CGG | + | chr2_1:59405837-59405856 | Msa0214770:CDS | 35.0% | |
| AAAATCGACAAGGAAAACGT+TGG | + | chr2_1:59405866-59405885 | Msa0214770:CDS | 35.0% | |
| CTCCAAGAAGAATAAAGAGT+GGG | + | chr2_1:59405948-59405967 | Msa0214770:CDS | 35.0% | |
| ATCCCACTCTTTATTCTTCT+TGG | - | chr2_1:59405953-59405972 | None:intergenic | 35.0% | |
| AGGTATTTACTGCTTCTCTT+TGG | - | chr2_1:59406123-59406142 | None:intergenic | 35.0% | |
| TTCACCATTGAGAACATTTG+AGG | - | chr2_1:59406143-59406162 | None:intergenic | 35.0% | |
| ! | ATTTTCACAGGAAAGTCATC+AGG | + | chr2_1:59406270-59406289 | Msa0214770:intron | 35.0% |
| ! | TTTTCACAGGAAAGTCATCA+GGG | + | chr2_1:59406271-59406290 | Msa0214770:intron | 35.0% |
| !! | TTCATGTACCGTTGATTTAG+AGG | + | chr2_1:59403981-59404000 | Msa0214770:CDS | 35.0% |
| TCAAGAACCTAACATTGGAA+TGG | + | chr2_1:59404014-59404033 | Msa0214770:CDS | 35.0% | |
| TCAAACTCCATTCCAATGTT+AGG | - | chr2_1:59404024-59404043 | None:intergenic | 35.0% | |
| ACTCATTATGCTAAGTCAGT+TGG | + | chr2_1:59404072-59404091 | Msa0214770:CDS | 35.0% | |
| TATGCTAAGTCAGTTGGATT+TGG | + | chr2_1:59404078-59404097 | Msa0214770:CDS | 35.0% | |
| ATGCTAAGTCAGTTGGATTT+GGG | + | chr2_1:59404079-59404098 | Msa0214770:CDS | 35.0% | |
| AGTTATGCTTGCACAAGATA+CGG | + | chr2_1:59404156-59404175 | Msa0214770:CDS | 35.0% | |
| GGAAAATAATGTGCATATGC+TGG | - | chr2_1:59404321-59404340 | None:intergenic | 35.0% | |
| ! | CATTATTTTCCTTGCCATAG+AGG | + | chr2_1:59404330-59404349 | Msa0214770:CDS | 35.0% |
| !! | TTATTGATTCCTCTATGGCA+AGG | - | chr2_1:59404342-59404361 | None:intergenic | 35.0% |
| !! | GAGCTTTATTGATTCCTCTA+TGG | - | chr2_1:59404347-59404366 | None:intergenic | 35.0% |
| ATTGAAACTTTGCACCATGT+TGG | + | chr2_1:59404378-59404397 | Msa0214770:CDS | 35.0% | |
| AACGCCGATCTTTATCTAAA+TGG | - | chr2_1:59404491-59404510 | None:intergenic | 35.0% | |
| TTTAGATAAAGATCGGCGTT+TGG | + | chr2_1:59404491-59404510 | Msa0214770:CDS | 35.0% | |
| CTCATGCAAGAAAAAAATCC+AGG | + | chr2_1:59404558-59404577 | Msa0214770:CDS | 35.0% | |
| TGCAATTGATATGGATGATG+AGG | + | chr2_1:59404590-59404609 | Msa0214770:CDS | 35.0% | |
| GCAATTGATATGGATGATGA+GGG | + | chr2_1:59404591-59404610 | Msa0214770:CDS | 35.0% | |
| AGAGAAGACTATCAAGAGTT+TGG | + | chr2_1:59404651-59404670 | Msa0214770:CDS | 35.0% | |
| !! | ATGCCATTTGCTCCTTTTAT+TGG | + | chr2_1:59404720-59404739 | Msa0214770:CDS | 35.0% |
| ACACCAATAAAAGGAGCAAA+TGG | - | chr2_1:59404726-59404745 | None:intergenic | 35.0% | |
| CACTTTCAATCAAGGTTACT+TGG | + | chr2_1:59404753-59404772 | Msa0214770:CDS | 35.0% | |
| AGACCAAGAACACTTTCATA+TGG | + | chr2_1:59404796-59404815 | Msa0214770:CDS | 35.0% | |
| !! | CAACCATATGAAAGTGTTCT+TGG | - | chr2_1:59404802-59404821 | None:intergenic | 35.0% |
| GAAAATATGGCTTAGAGCAA+TGG | + | chr2_1:59404824-59404843 | Msa0214770:CDS | 35.0% | |
| TCAGTTATGATTGCATTTGG+AGG | - | chr2_1:59404858-59404877 | None:intergenic | 35.0% | |
| TCAAGATAGAGCAATGAAAG+AGG | + | chr2_1:59404878-59404897 | Msa0214770:CDS | 35.0% | |
| CAAAATCGATGTCGAGAATT+TGG | - | chr2_1:59404921-59404940 | None:intergenic | 35.0% | |
| AAAACATGACTAAGCTTCTC+AGG | - | chr2_1:59404969-59404988 | None:intergenic | 35.0% | |
| TGAAGATAAGTGGCATGAAA+TGG | + | chr2_1:59405058-59405077 | Msa0214770:CDS | 35.0% | |
| ATTTGCTTCTCAAAAGGTGA+TGG | - | chr2_1:59405359-59405378 | None:intergenic | 35.0% | |
| !!! | GTTGAAGTTTTGGGATTATC+TGG | + | chr2_1:59405419-59405438 | Msa0214770:CDS | 35.0% |
| TTAGAAGCAAGCATCATACA+AGG | + | chr2_1:59405678-59405697 | Msa0214770:CDS | 35.0% | |
| GCTATTGAATTTCTCGAAGA+AGG | + | chr2_1:59405758-59405777 | Msa0214770:CDS | 35.0% | |
| TCAAAGTTTCTTCAAGTGCA+TGG | - | chr2_1:59405817-59405836 | None:intergenic | 35.0% | |
| AACAATGTGCAACTATCAAC+CGG | + | chr2_1:59405837-59405856 | Msa0214770:CDS | 35.0% | |
| AAAATCGACAAGGAAAACGT+TGG | + | chr2_1:59405866-59405885 | Msa0214770:CDS | 35.0% | |
| CTCCAAGAAGAATAAAGAGT+GGG | + | chr2_1:59405948-59405967 | Msa0214770:CDS | 35.0% | |
| ATCCCACTCTTTATTCTTCT+TGG | - | chr2_1:59405953-59405972 | None:intergenic | 35.0% | |
| AGGTATTTACTGCTTCTCTT+TGG | - | chr2_1:59406123-59406142 | None:intergenic | 35.0% | |
| TTCACCATTGAGAACATTTG+AGG | - | chr2_1:59406143-59406162 | None:intergenic | 35.0% | |
| ! | ATTTTCACAGGAAAGTCATC+AGG | + | chr2_1:59406270-59406289 | Msa0214770:intron | 35.0% |
| ! | TTTTCACAGGAAAGTCATCA+GGG | + | chr2_1:59406271-59406290 | Msa0214770:intron | 35.0% |
| ! | ATGGAAGTTGTTGATGGGAA+TGG | + | chr2_1:59403901-59403920 | Msa0214770:CDS | 40.0% |
| GAATGAAGAGCAAGTTGTCA+AGG | + | chr2_1:59403942-59403961 | Msa0214770:CDS | 40.0% | |
| !! | ACCGTTGATTTAGAGGCTAA+CGG | + | chr2_1:59403988-59404007 | Msa0214770:CDS | 40.0% |
| ! | ACCGTTAGCCTCTAAATCAA+CGG | - | chr2_1:59403992-59404011 | None:intergenic | 40.0% |
| ! | AAATCCACGTCCTTGTTTGA+AGG | + | chr2_1:59404203-59404222 | Msa0214770:CDS | 40.0% |
| CTGGAAAAAGTTCGTGATTG+TGG | - | chr2_1:59404302-59404321 | None:intergenic | 40.0% | |
| TCCATATTCTTTGGCCATTG+TGG | - | chr2_1:59404427-59404446 | None:intergenic | 40.0% | |
| ACAATGGCCAAAGAATATGG+AGG | + | chr2_1:59404426-59404445 | Msa0214770:CDS | 40.0% | |
| AGGAGATGCAAATGCAATGT+TGG | + | chr2_1:59404524-59404543 | Msa0214770:CDS | 40.0% | |
| !! | GTATTTTGGGTGGATGCAAA+AGG | + | chr2_1:59404627-59404646 | Msa0214770:CDS | 40.0% |
| !!! | CTCGACATCGATTTTGTCTT+TGG | + | chr2_1:59404925-59404944 | Msa0214770:CDS | 40.0% |
| AGATAAGTGGCATGAAATGG+TGG | + | chr2_1:59405061-59405080 | Msa0214770:CDS | 40.0% | |
| TGCTTTACAGGATAGAGAAG+AGG | + | chr2_1:59405280-59405299 | Msa0214770:CDS | 40.0% | |
| TTTACAGGATAGAGAAGAGG+CGG | + | chr2_1:59405283-59405302 | Msa0214770:CDS | 40.0% | |
| !!! | GGCAAGCTGATTTTAAGACA+TGG | + | chr2_1:59405309-59405328 | Msa0214770:CDS | 40.0% |
| ATGCTTGCTTCTAACATCCT+TGG | - | chr2_1:59405672-59405691 | None:intergenic | 40.0% | |
| AGAAGATGTGTGCTCTAGTA+AGG | + | chr2_1:59405709-59405728 | Msa0214770:CDS | 40.0% | |
| !!! | CCTTGTCGATTTTCAAAGAC+CGG | - | chr2_1:59405859-59405878 | None:intergenic | 40.0% |
| GCTCCAAGAAGAATAAAGAG+TGG | + | chr2_1:59405947-59405966 | Msa0214770:CDS | 40.0% | |
| ! | ATGGAAGTTGTTGATGGGAA+TGG | + | chr2_1:59403901-59403920 | Msa0214770:CDS | 40.0% |
| GAATGAAGAGCAAGTTGTCA+AGG | + | chr2_1:59403942-59403961 | Msa0214770:CDS | 40.0% | |
| !! | ACCGTTGATTTAGAGGCTAA+CGG | + | chr2_1:59403988-59404007 | Msa0214770:CDS | 40.0% |
| ! | ACCGTTAGCCTCTAAATCAA+CGG | - | chr2_1:59403992-59404011 | None:intergenic | 40.0% |
| ! | AAATCCACGTCCTTGTTTGA+AGG | + | chr2_1:59404203-59404222 | Msa0214770:CDS | 40.0% |
| CTGGAAAAAGTTCGTGATTG+TGG | - | chr2_1:59404302-59404321 | None:intergenic | 40.0% | |
| TCCATATTCTTTGGCCATTG+TGG | - | chr2_1:59404427-59404446 | None:intergenic | 40.0% | |
| ACAATGGCCAAAGAATATGG+AGG | + | chr2_1:59404426-59404445 | Msa0214770:CDS | 40.0% | |
| AGGAGATGCAAATGCAATGT+TGG | + | chr2_1:59404524-59404543 | Msa0214770:CDS | 40.0% | |
| !! | GTATTTTGGGTGGATGCAAA+AGG | + | chr2_1:59404627-59404646 | Msa0214770:CDS | 40.0% |
| !!! | CTCGACATCGATTTTGTCTT+TGG | + | chr2_1:59404925-59404944 | Msa0214770:CDS | 40.0% |
| AGATAAGTGGCATGAAATGG+TGG | + | chr2_1:59405061-59405080 | Msa0214770:CDS | 40.0% | |
| TGCTTTACAGGATAGAGAAG+AGG | + | chr2_1:59405280-59405299 | Msa0214770:CDS | 40.0% | |
| TTTACAGGATAGAGAAGAGG+CGG | + | chr2_1:59405283-59405302 | Msa0214770:CDS | 40.0% | |
| !!! | GGCAAGCTGATTTTAAGACA+TGG | + | chr2_1:59405309-59405328 | Msa0214770:CDS | 40.0% |
| ATGCTTGCTTCTAACATCCT+TGG | - | chr2_1:59405672-59405691 | None:intergenic | 40.0% | |
| AGAAGATGTGTGCTCTAGTA+AGG | + | chr2_1:59405709-59405728 | Msa0214770:CDS | 40.0% | |
| !!! | CCTTGTCGATTTTCAAAGAC+CGG | - | chr2_1:59405859-59405878 | None:intergenic | 40.0% |
| GCTCCAAGAAGAATAAAGAG+TGG | + | chr2_1:59405947-59405966 | Msa0214770:CDS | 40.0% | |
| ! | GTTGATTTAGAGGCTAACGG+TGG | + | chr2_1:59403991-59404010 | Msa0214770:CDS | 45.0% |
| GGTGGTCAAGAACCTAACAT+TGG | + | chr2_1:59404009-59404028 | Msa0214770:CDS | 45.0% | |
| ! | AGGACGTGGATTTTGTGAAC+TGG | - | chr2_1:59404196-59404215 | None:intergenic | 45.0% |
| TCACATCCCACCTTCAAACA+AGG | - | chr2_1:59404216-59404235 | None:intergenic | 45.0% | |
| TTGTTTGAAGGTGGGATGTG+AGG | + | chr2_1:59404215-59404234 | Msa0214770:CDS | 45.0% | |
| TGCTTGTTCTCACTCCAACA+TGG | - | chr2_1:59404395-59404414 | None:intergenic | 45.0% | |
| GCCACAATGGCCAAAGAATA+TGG | + | chr2_1:59404423-59404442 | Msa0214770:CDS | 45.0% | |
| ATATGGCTTAGAGCAATGGG+TGG | + | chr2_1:59404828-59404847 | Msa0214770:CDS | 45.0% | |
| AGAGTGTGATGTCTCGAAGA+AGG | + | chr2_1:59405526-59405545 | Msa0214770:CDS | 45.0% | |
| ! | TTGATGGCATTCCAAGCTGT+TGG | + | chr2_1:59405605-59405624 | Msa0214770:CDS | 45.0% |
| ! | CCGGTCTTTGAAAATCGACA+AGG | + | chr2_1:59405856-59405875 | Msa0214770:CDS | 45.0% |
| ATAAAGAGTGGGATCGAGAG+AGG | + | chr2_1:59405959-59405978 | Msa0214770:CDS | 45.0% | |
| AACAGCTGCATTGCCAAGAA+TGG | + | chr2_1:59406165-59406184 | Msa0214770:CDS | 45.0% | |
| ! | GTTGATTTAGAGGCTAACGG+TGG | + | chr2_1:59403991-59404010 | Msa0214770:CDS | 45.0% |
| GGTGGTCAAGAACCTAACAT+TGG | + | chr2_1:59404009-59404028 | Msa0214770:CDS | 45.0% | |
| ! | AGGACGTGGATTTTGTGAAC+TGG | - | chr2_1:59404196-59404215 | None:intergenic | 45.0% |
| TCACATCCCACCTTCAAACA+AGG | - | chr2_1:59404216-59404235 | None:intergenic | 45.0% | |
| TTGTTTGAAGGTGGGATGTG+AGG | + | chr2_1:59404215-59404234 | Msa0214770:CDS | 45.0% | |
| TGCTTGTTCTCACTCCAACA+TGG | - | chr2_1:59404395-59404414 | None:intergenic | 45.0% | |
| GCCACAATGGCCAAAGAATA+TGG | + | chr2_1:59404423-59404442 | Msa0214770:CDS | 45.0% | |
| ATATGGCTTAGAGCAATGGG+TGG | + | chr2_1:59404828-59404847 | Msa0214770:CDS | 45.0% | |
| AGAGTGTGATGTCTCGAAGA+AGG | + | chr2_1:59405526-59405545 | Msa0214770:CDS | 45.0% | |
| ! | TTGATGGCATTCCAAGCTGT+TGG | + | chr2_1:59405605-59405624 | Msa0214770:CDS | 45.0% |
| ! | CCGGTCTTTGAAAATCGACA+AGG | + | chr2_1:59405856-59405875 | Msa0214770:CDS | 45.0% |
| ATAAAGAGTGGGATCGAGAG+AGG | + | chr2_1:59405959-59405978 | Msa0214770:CDS | 45.0% | |
| AACAGCTGCATTGCCAAGAA+TGG | + | chr2_1:59406165-59406184 | Msa0214770:CDS | 45.0% | |
| ! | TCCACGTCCTTGTTTGAAGG+TGG | + | chr2_1:59404206-59404225 | Msa0214770:CDS | 50.0% |
| ! | CCACGTCCTTGTTTGAAGGT+GGG | + | chr2_1:59404207-59404226 | Msa0214770:CDS | 50.0% |
| !! | CGGCGTTTGGCTTTAGAATC+AGG | + | chr2_1:59404504-59404523 | Msa0214770:CDS | 50.0% |
| AGGATAGAGAAGAGGCGGAA+AGG | + | chr2_1:59405288-59405307 | Msa0214770:CDS | 50.0% | |
| GGCACAAGCAACCTGTTCTT+AGG | + | chr2_1:59405330-59405349 | Msa0214770:CDS | 50.0% | |
| !! | GGTGATGGAGTCCTAAGAAC+AGG | - | chr2_1:59405344-59405363 | None:intergenic | 50.0% |
| CAACACAGACACCAACAGCT+TGG | - | chr2_1:59405619-59405638 | None:intergenic | 50.0% | |
| ! | TCCACGTCCTTGTTTGAAGG+TGG | + | chr2_1:59404206-59404225 | Msa0214770:CDS | 50.0% |
| ! | CCACGTCCTTGTTTGAAGGT+GGG | + | chr2_1:59404207-59404226 | Msa0214770:CDS | 50.0% |
| !! | CGGCGTTTGGCTTTAGAATC+AGG | + | chr2_1:59404504-59404523 | Msa0214770:CDS | 50.0% |
| AGGATAGAGAAGAGGCGGAA+AGG | + | chr2_1:59405288-59405307 | Msa0214770:CDS | 50.0% | |
| GGCACAAGCAACCTGTTCTT+AGG | + | chr2_1:59405330-59405349 | Msa0214770:CDS | 50.0% | |
| !! | GGTGATGGAGTCCTAAGAAC+AGG | - | chr2_1:59405344-59405363 | None:intergenic | 50.0% |
| CAACACAGACACCAACAGCT+TGG | - | chr2_1:59405619-59405638 | None:intergenic | 50.0% | |
| CCCACCTTCAAACAAGGACG+TGG | - | chr2_1:59404210-59404229 | None:intergenic | 55.0% | |
| CCCACCTTCAAACAAGGACG+TGG | - | chr2_1:59404210-59404229 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 59403901 | 59406297 | 59403901 | ID=Msa0214770;Name=Msa0214770 |
| chr2_1 | mRNA | 59403901 | 59406297 | 59403901 | ID=Msa0214770-mRNA-1;Parent=Msa0214770;Name=Msa0214770-mRNA-1;_AED=0.34;_eAED=0.37;_QI=0|0|0|0.33|1|1|3|0|736 |
| chr2_1 | exon | 59403901 | 59406015 | 59403901 | ID=Msa0214770-mRNA-1:exon:16400;Parent=Msa0214770-mRNA-1 |
| chr2_1 | exon | 59406109 | 59406186 | 59406109 | ID=Msa0214770-mRNA-1:exon:16401;Parent=Msa0214770-mRNA-1 |
| chr2_1 | exon | 59406280 | 59406297 | 59406280 | ID=Msa0214770-mRNA-1:exon:16402;Parent=Msa0214770-mRNA-1 |
| chr2_1 | CDS | 59403901 | 59406015 | 59403901 | ID=Msa0214770-mRNA-1:cds;Parent=Msa0214770-mRNA-1 |
| chr2_1 | CDS | 59406109 | 59406186 | 59406109 | ID=Msa0214770-mRNA-1:cds;Parent=Msa0214770-mRNA-1 |
| chr2_1 | CDS | 59406280 | 59406297 | 59406280 | ID=Msa0214770-mRNA-1:cds;Parent=Msa0214770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
