AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0215460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0215460 MtrunA17_Chr2g0316551 98.000 350 5 2 1 350 1 348 0.0 702
Msa0215460 MtrunA17_Chr2g0325131 53.550 338 126 9 1 336 1 309 6.90e-104 309
Msa0215460 MtrunA17_Chr4g0040891 52.874 348 118 16 1 337 1 313 2.51e-94 284
Msa0215460 MtrunA17_Chr8g0380611 31.672 341 158 12 2 305 22 324 5.57e-29 115
Msa0215460 MtrunA17_Chr5g0432701 51.064 94 46 0 209 302 158 251 2.40e-22 96.7
Msa0215460 MtrunA17_Chr4g0036071 46.018 113 57 1 208 320 358 466 1.44e-21 95.5
Msa0215460 MtrunA17_Chr2g0329551 29.167 288 165 8 74 329 68 348 1.62e-21 95.1
Msa0215460 MtrunA17_Chr3g0107491 46.316 95 51 0 208 302 175 269 1.09e-20 92.0
Msa0215460 MtrunA17_Chr6g0463571 49.474 95 48 0 208 302 149 243 1.42e-20 90.9
Msa0215460 MtrunA17_Chr3g0128781 46.316 95 51 0 208 302 106 200 2.52e-19 87.4
Msa0215460 MtrunA17_Chr1g0156051 49.495 99 46 2 207 303 384 480 1.22e-13 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0215460 AT3G58120.1 51.754 342 107 7 1 317 1 309 7.47e-98 293
Msa0215460 AT2G42380.2 50.755 331 109 10 1 316 1 292 2.33e-84 258
Msa0215460 AT3G58120.2 49.206 315 102 7 1 290 1 282 4.19e-79 244
Msa0215460 AT2G42380.1 47.130 331 110 10 1 316 1 281 4.00e-74 232
Msa0215460 AT2G42380.5 49.342 304 100 10 1 289 1 265 2.36e-69 218
Msa0215460 AT2G42380.3 42.322 267 100 9 1 252 1 228 7.86e-42 146
Msa0215460 AT2G42380.4 42.322 267 100 9 1 252 1 228 7.86e-42 146
Msa0215460 AT1G58110.1 55.172 87 39 0 219 305 238 324 3.33e-23 99.8
Msa0215460 AT1G58110.2 55.172 87 39 0 219 305 238 324 3.33e-23 99.8
Msa0215460 AT2G40620.1 36.318 201 108 7 106 302 56 240 8.43e-22 95.5
Msa0215460 AT4G38900.2 50.526 95 47 0 208 302 392 486 1.46e-21 96.3
Msa0215460 AT4G38900.3 50.526 95 47 0 208 302 392 486 1.46e-21 96.3
Msa0215460 AT2G31370.5 40.000 140 79 1 208 342 199 338 1.70e-21 94.7
Msa0215460 AT2G31370.2 40.000 140 79 1 208 342 199 338 3.22e-21 94.4
Msa0215460 AT2G31370.4 40.000 140 79 1 208 342 199 338 3.22e-21 94.4
Msa0215460 AT2G31370.1 40.000 140 79 1 208 342 199 338 3.22e-21 94.4
Msa0215460 AT2G31370.7 40.000 140 79 1 208 342 199 338 3.22e-21 94.4
Msa0215460 AT2G31370.3 40.000 140 79 1 208 342 199 338 3.22e-21 94.4
Msa0215460 AT2G31370.6 40.000 140 79 1 208 342 199 338 3.22e-21 94.4
Msa0215460 AT1G43700.1 43.333 120 67 1 199 318 183 301 4.13e-21 93.2
Msa0215460 AT1G06850.1 48.936 94 48 0 209 302 147 240 5.38e-21 92.8
Msa0215460 AT5G04840.1 30.909 330 156 13 2 320 5 273 5.44e-21 92.4
Msa0215460 AT1G06070.1 41.880 117 62 1 208 324 208 318 9.16e-21 93.2
Msa0215460 AT2G21230.4 45.631 103 56 0 207 309 367 469 4.42e-20 91.7
Msa0215460 AT2G21230.1 45.631 103 56 0 207 309 367 469 4.42e-20 91.7
Msa0215460 AT1G35490.2 29.098 244 130 8 61 301 54 257 9.10e-20 88.6
Msa0215460 AT1G35490.1 29.098 244 130 8 61 301 54 257 9.10e-20 88.6
Msa0215460 AT4G38900.1 47.525 101 47 1 208 302 392 492 2.64e-19 89.4
Msa0215460 AT2G21230.3 42.202 109 57 1 207 309 367 475 1.15e-17 84.3
Msa0215460 AT5G04840.2 30.640 297 145 12 2 290 5 248 1.43e-16 78.6
Msa0215460 AT2G21230.2 48.193 83 43 0 207 289 367 449 9.74e-16 78.6
Msa0215460 AT2G12900.1 37.374 99 62 0 206 304 112 210 9.42e-13 68.2
Msa0215460 AT1G06850.2 71.111 45 13 0 209 253 147 191 2.06e-12 66.6
Msa0215460 AT5G07160.1 39.785 93 56 0 210 302 48 140 4.32e-12 63.9
Msa0215460 AT2G13150.1 35.000 100 65 0 206 305 145 244 1.32e-11 64.7

Find 142 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTGCAATCCGTTGCTTTA+TGG 0.114715 2_1:-60703628 None:intergenic
GAGGAAAATATGGCCAATTT+TGG 0.122443 2_1:-60701688 None:intergenic
CTTCATTGTTATTGCTATTT+TGG 0.141213 2_1:-60702087 None:intergenic
CACATACTCATTGGGATTAA+TGG 0.165650 2_1:+60701631 Msa0215460:exon
TTGTATATATACCAGAATTT+TGG 0.218450 2_1:+60703303 Msa0215460:intron
CTAATAAGGTCCTAAGGTTT+TGG 0.238431 2_1:-60701229 None:intergenic
GGCTAAACACCCTCTATATC+TGG 0.242105 2_1:+60701602 Msa0215460:five_prime_UTR
CCCAAATAATCACCTTAAAA+AGG 0.251825 2_1:-60704869 None:intergenic
TTCAGTGCAGGTGATGTTTC+CGG 0.261998 2_1:-60702245 None:intergenic
GTCACCACGAGTTGCATTCT+TGG 0.266371 2_1:+60703569 Msa0215460:CDS
GGTGGTTGTGGTCGTGGTGG+TGG 0.279071 2_1:-60701756 None:intergenic
GACAAACAGTTATGAGTAAT+TGG 0.285725 2_1:+60704783 Msa0215460:three_prime_UTR
CAGAGAACATGGATATTAAT+TGG 0.292855 2_1:-60701991 None:intergenic
GATGGTCAGAAGTATTATTC+TGG 0.294836 2_1:-60701781 None:intergenic
ACCCTTTGGTGAGGAAAATA+TGG 0.310828 2_1:-60701698 None:intergenic
AAATATAGTGGGTTTGTATT+GGG 0.317210 2_1:+60705004 Msa0215460:three_prime_UTR
CAAGTACCATACCCCAAAAT+TGG 0.328203 2_1:+60701675 Msa0215460:CDS
AAAATATAGTGGGTTTGTAT+TGG 0.356749 2_1:+60705003 Msa0215460:three_prime_UTR
GTGATTATTTGGGATTGGTT+TGG 0.359608 2_1:+60704879 Msa0215460:three_prime_UTR
AAGGAGTGTAACATCTTTGC+AGG 0.360535 2_1:+60703387 Msa0215460:CDS
TTAAGGTGATTATTTGGGAT+TGG 0.390599 2_1:+60704874 Msa0215460:three_prime_UTR
TGTTGTTGTGGCTGTGATGT+TGG 0.396153 2_1:-60704613 None:intergenic
GGGATATATATGTATGGAAA+TGG 0.396876 2_1:+60705024 Msa0215460:three_prime_UTR
AGGAGTGGTGGTGGCGGTGG+TGG 0.401882 2_1:+60701944 Msa0215460:CDS
ACTTCAAAATCTTGTTCTCT+CGG 0.405210 2_1:-60701454 None:intergenic
GTGATGGTGGTGATTGTTGA+TGG 0.405926 2_1:-60701799 None:intergenic
CGGTTGTTTGTGTGTTGGTT+AGG 0.406870 2_1:+60701486 Msa0215460:five_prime_UTR
AGTGGTGGTGGCGGTGGTGG+AGG 0.410009 2_1:+60701947 Msa0215460:CDS
CTGGGTGGTGGTTGTGGTCG+TGG 0.412786 2_1:-60701762 None:intergenic
TGCAGGAGTGGTGGTGGCGG+TGG 0.414536 2_1:+60701941 Msa0215460:CDS
CCAACAAAACATACAAAAGA+TGG 0.422195 2_1:+60704537 Msa0215460:CDS
TGTGGCTGTGATGTTGGTGT+TGG 0.423054 2_1:-60704607 None:intergenic
ATGTTCTCTGACAATGTTGC+CGG 0.425101 2_1:+60702004 Msa0215460:CDS
GGTTGTGGTCGTGGTGGTGG+AGG 0.426235 2_1:-60701753 None:intergenic
GGATTATGTATTATGTTCCT+TGG 0.430018 2_1:+60704714 Msa0215460:three_prime_UTR
GGATTTGCTCCTTGTGCTGA+TGG 0.435960 2_1:-60704642 None:intergenic
GACTGCAGGAGTGGTGGTGG+CGG 0.440441 2_1:+60701938 Msa0215460:CDS
TGGGGTTCACACATACTCAT+TGG 0.440523 2_1:+60701622 Msa0215460:five_prime_UTR
CTTCAAAATCTTGTTCTCTC+GGG 0.444914 2_1:-60701453 None:intergenic
CGATAAGGCGTGGGGCTCAC+AGG 0.446573 2_1:+60701864 Msa0215460:CDS
TCATCGACGGCTTCATCCTT+AGG 0.449640 2_1:-60702175 None:intergenic
CATCTTTGAAAAGCTTGTCC+TGG 0.451454 2_1:-60703656 None:intergenic
TAAGGAACACATCACATGTT+AGG 0.451466 2_1:-60704738 None:intergenic
AAGGAGCAAATCCTCAGTTA+AGG 0.456072 2_1:+60704652 Msa0215460:CDS
AAAGCAACGGATTGCAGCAT+TGG 0.460058 2_1:+60703632 Msa0215460:CDS
CACTCTCTCTCCAAAACCTT+AGG 0.470640 2_1:+60701219 Msa0215460:five_prime_UTR
TGTATTGGGATATATATGTA+TGG 0.474426 2_1:+60705018 Msa0215460:three_prime_UTR
ATGGTCAGAAGTATTATTCT+GGG 0.476907 2_1:-60701780 None:intergenic
ATCTTTGAAAAGCTTGTCCT+GGG 0.477116 2_1:-60703655 None:intergenic
GGCAATCAGCTCAGAGGTCA+AGG 0.479409 2_1:+60703332 Msa0215460:CDS
GTGGGAGACAAGAGAGAGAG+AGG 0.480514 2_1:-60701418 None:intergenic
AGAAGTATTATTCTGGGTGG+TGG 0.481961 2_1:-60701774 None:intergenic
TAAGGAGGGACAAAATATAG+TGG 0.483315 2_1:+60704992 Msa0215460:three_prime_UTR
GGGGTTCACACATACTCATT+GGG 0.483503 2_1:+60701623 Msa0215460:five_prime_UTR
GGAGGTGATGTTTGACATTG+TGG 0.486295 2_1:-60701735 None:intergenic
TCCTCGACTTCTCCTCGATA+AGG 0.487643 2_1:+60701849 Msa0215460:CDS
ATTATTCTGGGTGGTGGTTG+TGG 0.489019 2_1:-60701768 None:intergenic
ACGGATTGCAGCATTGGCCC+AGG 0.491712 2_1:+60703638 Msa0215460:CDS
ATCCACAACGGTTTCAGTGC+AGG 0.497157 2_1:-60702257 None:intergenic
TAGGAAGTTGACATGTGGAT+TGG 0.497196 2_1:+60704810 Msa0215460:three_prime_UTR
AGGAGCAAATCCTCAGTTAA+GGG 0.505684 2_1:+60704653 Msa0215460:CDS
GCTAAACACCCTCTATATCT+GGG 0.507111 2_1:+60701603 Msa0215460:five_prime_UTR
GTATTGTACATGACACAATA+TGG 0.507240 2_1:+60701354 Msa0215460:five_prime_UTR
AGAAGGAAATAGAAAGGTTG+AGG 0.509958 2_1:+60704503 Msa0215460:CDS
GCATCCAACACCATTGCCAT+TGG 0.510208 2_1:-60702115 None:intergenic
CAGTAAGAATCATACGTTGA+TGG 0.511877 2_1:-60703593 None:intergenic
ACTTCTCCTCGATAAGGCGT+GGG 0.514254 2_1:+60701855 Msa0215460:CDS
TGGATCCCAAGAGGGTCAAA+AGG 0.516377 2_1:+60702275 Msa0215460:CDS
GAAGACTGCAGGAGTGGTGG+TGG 0.518418 2_1:+60701935 Msa0215460:CDS
TTCCTTATCAAAGTTGATGT+GGG 0.518899 2_1:+60704754 Msa0215460:three_prime_UTR
GTTATGAGTAATTGGAGGGT+AGG 0.521398 2_1:+60704791 Msa0215460:three_prime_UTR
TGGTGGAGGATTTGATAGAC+TGG 0.528585 2_1:+60701961 Msa0215460:CDS
AAAACCAATGGCAATGGTGT+TGG 0.529590 2_1:+60702111 Msa0215460:CDS
TACTCATAACTGTTTGTCAT+GGG 0.531448 2_1:-60704778 None:intergenic
CATCACAACAATTACCATCA+TGG 0.531974 2_1:+60701816 Msa0215460:CDS
GACTTCTCCTCGATAAGGCG+TGG 0.532570 2_1:+60701854 Msa0215460:CDS
GGCAACATTGTCAGAGAACA+TGG 0.535418 2_1:-60702002 None:intergenic
GCCCCACATCAACTTTGATA+AGG 0.538374 2_1:-60704756 None:intergenic
TGATGGAAAGATTGTTGTTG+TGG 0.543696 2_1:-60704625 None:intergenic
GAGGAAGGCAATAGAGTCAC+TGG 0.543901 2_1:-60701894 None:intergenic
TGGTCGGAGGATGGTGACGA+TGG 0.544700 2_1:-60702067 None:intergenic
GGTCGGAGGATGGTGACGAT+GGG 0.544837 2_1:-60702066 None:intergenic
GTCGATGACAACGGCAAAGG+CGG 0.547044 2_1:-60702037 None:intergenic
CATTAAAGAAGGAAATAGAA+AGG 0.550196 2_1:+60704497 Msa0215460:CDS
GCGGCAGCACCATCATCCTC+CGG 0.550627 2_1:+60702226 Msa0215460:CDS
AGTACATTTCTGAGCTTGAA+AGG 0.553091 2_1:+60703368 Msa0215460:CDS
GGAGGATGGTGACGATGGGT+TGG 0.554167 2_1:-60702062 None:intergenic
CATGATGGTAATTGTTGTGA+TGG 0.559426 2_1:-60701815 None:intergenic
CAACAAAACATACAAAAGAT+GGG 0.561228 2_1:+60704538 Msa0215460:CDS
ACATCAAGAAGCATTAAAGA+AGG 0.562831 2_1:+60704486 Msa0215460:CDS
CTCGGGCTTCTAAAAGTAGT+GGG 0.563423 2_1:-60701436 None:intergenic
TTACTCATAACTGTTTGTCA+TGG 0.569714 2_1:-60704779 None:intergenic
ATGATGTTGATGATACCCTT+TGG 0.573676 2_1:-60701712 None:intergenic
CTCGAGGAAGACTGCAGGAG+TGG 0.574880 2_1:+60701929 Msa0215460:CDS
TGTGTGAACCCCAGATATAG+AGG 0.575444 2_1:-60701612 None:intergenic
TCATCATGAGGTGAAGCCTA+AGG 0.575470 2_1:+60702159 Msa0215460:CDS
TGATGAAGATAATGCTCTTG+AGG 0.578485 2_1:-60702142 None:intergenic
ATTTGCGGTTGTTTGTGTGT+TGG 0.580731 2_1:+60701481 Msa0215460:five_prime_UTR
ACACGAACTGTCATCATCGA+CGG 0.581964 2_1:-60702188 None:intergenic
TCCTTATCAAAGTTGATGTG+GGG 0.583795 2_1:+60704755 Msa0215460:three_prime_UTR
TCTCGGGCTTCTAAAAGTAG+TGG 0.584165 2_1:-60701437 None:intergenic
AAGGAGGGACAAAATATAGT+GGG 0.585733 2_1:+60704993 Msa0215460:three_prime_UTR
AAACAGTTATGAGTAATTGG+AGG 0.587681 2_1:+60704786 Msa0215460:three_prime_UTR
GTTCCTTATCAAAGTTGATG+TGG 0.588662 2_1:+60704753 Msa0215460:three_prime_UTR
GACCCTCTTGGGATCCACAA+CGG 0.590222 2_1:-60702269 None:intergenic
CAAAGGCGGGAAAGATACGC+CGG 0.592526 2_1:-60702023 None:intergenic
TCGATGACAACGGCAAAGGC+GGG 0.594747 2_1:-60702036 None:intergenic
GAGAAATGATGTCTCGAGGA+AGG 0.595132 2_1:-60701909 None:intergenic
CATTTCTCGAGGAAGACTGC+AGG 0.596326 2_1:+60701924 Msa0215460:CDS
GGTGGTGGTTGTGGTCGTGG+TGG 0.597803 2_1:-60701759 None:intergenic
AGGAATTCGTCTATCCATGA+TGG 0.597813 2_1:-60701830 None:intergenic
GTGAGCCCCACGCCTTATCG+AGG 0.599484 2_1:-60701861 None:intergenic
TAAGGCGTGGGGCTCACAGG+CGG 0.603287 2_1:+60701867 Msa0215460:CDS
GACGTCGATGACAACGGCAA+AGG 0.605069 2_1:-60702040 None:intergenic
GTGATGTTTCCGGAGGATGA+TGG 0.605743 2_1:-60702235 None:intergenic
GTTAATAGTAACATTAACAA+TGG 0.606660 2_1:+60704568 Msa0215460:CDS
GAGGGTAGGAAGTTGACATG+TGG 0.607916 2_1:+60704805 Msa0215460:three_prime_UTR
CACCTGCACTGAAACCGTTG+TGG 0.612559 2_1:+60702255 Msa0215460:CDS
CCTCGAGACATCATTTCTCG+AGG 0.612795 2_1:+60701913 Msa0215460:CDS
GAGGAAGACTGCAGGAGTGG+TGG 0.618813 2_1:+60701932 Msa0215460:CDS
TATTAAAGAGATATGATGAG+AGG 0.622790 2_1:-60701391 None:intergenic
AACCGTTGTGGATCCCAAGA+GGG 0.623443 2_1:+60702267 Msa0215460:CDS
GATGGTAATTGTTGTGATGG+TGG 0.623528 2_1:-60701812 None:intergenic
TACATGACACAATATGGTGC+AGG 0.629446 2_1:+60701360 Msa0215460:five_prime_UTR
AACAGTTATGAGTAATTGGA+GGG 0.634282 2_1:+60704787 Msa0215460:three_prime_UTR
GCAATCAGCTCAGAGGTCAA+GGG 0.637616 2_1:+60703333 Msa0215460:CDS
AGAGCATTATCTTCATCATG+AGG 0.643559 2_1:+60702147 Msa0215460:CDS
CCTCGAGAAATGATGTCTCG+AGG 0.646437 2_1:-60701913 None:intergenic
CTAAACACCCTCTATATCTG+GGG 0.650592 2_1:+60701604 Msa0215460:five_prime_UTR
GCCTTATCGAGGAGAAGTCG+AGG 0.651890 2_1:-60701850 None:intergenic
AGTGCAGGTGATGTTTCCGG+AGG 0.655701 2_1:-60702242 None:intergenic
CACATCACATGTTAGGACCA+AGG 0.658601 2_1:-60704731 None:intergenic
CTTCTCCTCGATAAGGCGTG+GGG 0.658846 2_1:+60701856 Msa0215460:CDS
ACAATCTTTCCATCAGCACA+AGG 0.663801 2_1:+60704633 Msa0215460:CDS
AAACCGTTGTGGATCCCAAG+AGG 0.664635 2_1:+60702266 Msa0215460:CDS
GTGTGAACCCCAGATATAGA+GGG 0.667603 2_1:-60701611 None:intergenic
GTCAGAAGTATTATTCTGGG+TGG 0.668741 2_1:-60701777 None:intergenic
CTAATAGGCAATCAGCTCAG+AGG 0.670951 2_1:+60703326 Msa0215460:CDS
ACAACAGTGCCATAAAGCAA+CGG 0.673543 2_1:+60703619 Msa0215460:CDS
GTTGATGATACCCTTTGGTG+AGG 0.678486 2_1:-60701707 None:intergenic
GGGTTGGACGTCGATGACAA+CGG 0.710005 2_1:-60702046 None:intergenic
TGGTCCAAGAATGCAACTCG+TGG 0.753629 2_1:-60703573 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCATATTGTATATAAAAT+TGG + chr2_1:60703438-60703457 Msa0215460:intron 10.0%
!!! CTATTTTTTTTCTTAGATTA+TGG - chr2_1:60701300-60701319 None:intergenic 15.0%
!! TAATCTAAGAAAAAAAATAG+AGG + chr2_1:60701300-60701319 Msa0215460:five_prime_UTR 15.0%
!! AATCTAAGAAAAAAAATAGA+GGG + chr2_1:60701301-60701320 Msa0215460:five_prime_UTR 15.0%
!!! TAGTAAATATTTGACTTTTA+TGG + chr2_1:60703148-60703167 Msa0215460:intron 15.0%
!!! TTTTTCACAATTAACTAATT+TGG - chr2_1:60703474-60703493 None:intergenic 15.0%
!!! GTAATTTTTGTTAATTAGAA+AGG + chr2_1:60703766-60703785 Msa0215460:intron 15.0%
!! GAAAAAAAAATAGAAAAAAG+TGG + chr2_1:60704693-60704712 Msa0215460:three_prime_UTR 15.0%
!!! TTTTTCAATTTTCCTTTTTA+AGG + chr2_1:60704857-60704876 Msa0215460:three_prime_UTR 15.0%
!!! GTATGTATTGTTTTCTAATA+AGG - chr2_1:60701246-60701265 None:intergenic 20.0%
!! CTATGATATGATATAGTAAA+TGG + chr2_1:60702334-60702353 Msa0215460:intron 20.0%
!! TTATAAAACTGAGAAATTCA+TGG + chr2_1:60702595-60702614 Msa0215460:intron 20.0%
!! TATAAAACTGAGAAATTCAT+GGG + chr2_1:60702596-60702615 Msa0215460:intron 20.0%
!!! AATAAATTGAAAGTTTTTGC+TGG + chr2_1:60702622-60702641 Msa0215460:intron 20.0%
!!! AATTAATTTGTTTAAACCCA+TGG + chr2_1:60702751-60702770 Msa0215460:intron 20.0%
!! CTAAACAAATTAATATCCAT+GGG - chr2_1:60702770-60702789 None:intergenic 20.0%
!!! CATGGATATTAATTTGTTTA+GGG + chr2_1:60702769-60702788 Msa0215460:intron 20.0%
!!! AAGACAGAAAATTCTATTTT+TGG - chr2_1:60702833-60702852 None:intergenic 20.0%
!!! AAAAATAGAATTTTCTGTCT+TGG + chr2_1:60702832-60702851 Msa0215460:intron 20.0%
!!! TAACAAAAACTTACTTCTTT+TGG + chr2_1:60702901-60702920 Msa0215460:intron 20.0%
!! TTTGATGAATCTTAAACAAA+TGG - chr2_1:60702965-60702984 None:intergenic 20.0%
!!! AAACACATTTTAAAGTTACA+AGG + chr2_1:60703172-60703191 Msa0215460:intron 20.0%
!! TGATAATAAGCAATTAGATT+TGG - chr2_1:60703282-60703301 None:intergenic 20.0%
!!! TTGTATATATACCAGAATTT+TGG + chr2_1:60703303-60703322 Msa0215460:intron 20.0%
!! TGAAAAATGAGAAAATGATT+TGG + chr2_1:60703487-60703506 Msa0215460:intron 20.0%
!! ATTAATCAAGCTTATAAAGA+TGG - chr2_1:60703713-60703732 None:intergenic 20.0%
!!! TTCAAAAATGTGTTTTTGTA+GGG - chr2_1:60703954-60703973 None:intergenic 20.0%
!!! TTTCAAAAATGTGTTTTTGT+AGG - chr2_1:60703955-60703974 None:intergenic 20.0%
!! TTAGTTCAATTATAGTAAAC+CGG + chr2_1:60704371-60704390 Msa0215460:intron 20.0%
!! GTTAATAGTAACATTAACAA+TGG + chr2_1:60704568-60704587 Msa0215460:CDS 20.0%
!!! ATTCTCAATGATTTTCTTTT+TGG + chr2_1:60704961-60704980 Msa0215460:three_prime_UTR 20.0%
!!! TTCTCAATGATTTTCTTTTT+GGG + chr2_1:60704962-60704981 Msa0215460:three_prime_UTR 20.0%
!!! TTATTTTCTCCTATTTTTTG+TGG + chr2_1:60705061-60705080 Msa0215460:three_prime_UTR 20.0%
!!! TTCTTGTATTTTTCTTTACT+TGG + chr2_1:60705112-60705131 Msa0215460:three_prime_UTR 20.0%
!!! TCTTGTATTTTTCTTTACTT+GGG + chr2_1:60705113-60705132 Msa0215460:three_prime_UTR 20.0%
! TATTAAAGAGATATGATGAG+AGG - chr2_1:60701394-60701413 None:intergenic 25.0%
!!! GATTTTGAAGTAAAGATTTG+CGG + chr2_1:60701466-60701485 Msa0215460:five_prime_UTR 25.0%
!!! ATTGTTATTGCTATTTTGGT+CGG - chr2_1:60702086-60702105 None:intergenic 25.0%
!!! CTTCATTGTTATTGCTATTT+TGG - chr2_1:60702090-60702109 None:intergenic 25.0%
! TAACAATGAAGAAAAACCAA+TGG + chr2_1:60702099-60702118 Msa0215460:CDS 25.0%
! AAAATTTAACGTGTAAGACT+GGG - chr2_1:60702466-60702485 None:intergenic 25.0%
! TAAAATTTAACGTGTAAGAC+TGG - chr2_1:60702467-60702486 None:intergenic 25.0%
! TCTTCTTCAAGAAAAAACAA+TGG - chr2_1:60702505-60702524 None:intergenic 25.0%
! AATTGTAGTATAGATATGCA+TGG + chr2_1:60702651-60702670 Msa0215460:intron 25.0%
! CCTAAACAAATTAATATCCA+TGG - chr2_1:60702771-60702790 None:intergenic 25.0%
!!! CCATGGATATTAATTTGTTT+AGG + chr2_1:60702768-60702787 Msa0215460:intron 25.0%
! GAAAAATGTGAAAATGAAGA+CGG + chr2_1:60703533-60703552 Msa0215460:intron 25.0%
!! TAGATGTGGAATTTTTCATA+TGG + chr2_1:60703921-60703940 Msa0215460:intron 25.0%
! GCTGTTAAAAAAATCACTTT+AGG + chr2_1:60704133-60704152 Msa0215460:intron 25.0%
! TTATGATCATATTGAGATAG+TGG + chr2_1:60704162-60704181 Msa0215460:intron 25.0%
! TATGATCATATTGAGATAGT+GGG + chr2_1:60704163-60704182 Msa0215460:intron 25.0%
!! TTCAATTGAACATATTGGTT+TGG - chr2_1:60704215-60704234 None:intergenic 25.0%
! AATCTGACTACAATACAATT+GGG - chr2_1:60704265-60704284 None:intergenic 25.0%
! GTTTAAACCAAGATTAAACT+AGG + chr2_1:60704292-60704311 Msa0215460:intron 25.0%
! AGTTTATCCTAGTTTAATCT+TGG - chr2_1:60704302-60704321 None:intergenic 25.0%
! CATTAAAGAAGGAAATAGAA+AGG + chr2_1:60704497-60704516 Msa0215460:CDS 25.0%
! CAACAAAACATACAAAAGAT+GGG + chr2_1:60704538-60704557 Msa0215460:CDS 25.0%
!!! TCCTTTTTAAGGTGATTATT+TGG + chr2_1:60704868-60704887 Msa0215460:three_prime_UTR 25.0%
!!! CCTTTTTAAGGTGATTATTT+GGG + chr2_1:60704869-60704888 Msa0215460:three_prime_UTR 25.0%
!! TCTCAATGATTTTCTTTTTG+GGG + chr2_1:60704963-60704982 Msa0215460:three_prime_UTR 25.0%
!!! AAAATATAGTGGGTTTGTAT+TGG + chr2_1:60705003-60705022 Msa0215460:three_prime_UTR 25.0%
!!! AAATATAGTGGGTTTGTATT+GGG + chr2_1:60705004-60705023 Msa0215460:three_prime_UTR 25.0%
! TGTATTGGGATATATATGTA+TGG + chr2_1:60705018-60705037 Msa0215460:three_prime_UTR 25.0%
! TGTTTTCTAATAAGGTCCTA+AGG - chr2_1:60701238-60701257 None:intergenic 30.0%
GTATTGTACATGACACAATA+TGG + chr2_1:60701354-60701373 Msa0215460:five_prime_UTR 30.0%
ACTTCAAAATCTTGTTCTCT+CGG - chr2_1:60701457-60701476 None:intergenic 30.0%
CAACACAAGACCAAAAATTT+CGG + chr2_1:60701581-60701600 Msa0215460:five_prime_UTR 30.0%
! AGGAAAATATGGCCAATTTT+GGG - chr2_1:60701690-60701709 None:intergenic 30.0%
!! ATGGTCAGAAGTATTATTCT+GGG - chr2_1:60701783-60701802 None:intergenic 30.0%
CAGAGAACATGGATATTAAT+TGG - chr2_1:60701994-60702013 None:intergenic 30.0%
ATCATAAATAGAACGTGCAT+GGG - chr2_1:60702378-60702397 None:intergenic 30.0%
TATCATAAATAGAACGTGCA+TGG - chr2_1:60702379-60702398 None:intergenic 30.0%
AGAAAAATCCCTGTTAATTG+AGG + chr2_1:60702522-60702541 Msa0215460:intron 30.0%
GAAAAATCCCTGTTAATTGA+GGG + chr2_1:60702523-60702542 Msa0215460:intron 30.0%
GATGAATCTTAAACAAATGG+AGG - chr2_1:60702962-60702981 None:intergenic 30.0%
!!! ATACCAGAATTTTGGCTAAT+AGG + chr2_1:60703311-60703330 Msa0215460:intron 30.0%
GAAGATCAACAAACAATTCT+AGG - chr2_1:60703873-60703892 None:intergenic 30.0%
!! TGTTGATAATCACTTAGATG+TGG + chr2_1:60703907-60703926 Msa0215460:intron 30.0%
AGGAATTAATTCTTCATGCT+AGG + chr2_1:60704025-60704044 Msa0215460:intron 30.0%
AATTAATTCTTCATGCTAGG+TGG + chr2_1:60704028-60704047 Msa0215460:intron 30.0%
CAACTACAAAACGATACTTA+GGG - chr2_1:60704071-60704090 None:intergenic 30.0%
! TATCGTTTTGTAGTTGGATT+GGG + chr2_1:60704075-60704094 Msa0215460:intron 30.0%
! GTTGGTTCAATTGAACATAT+TGG - chr2_1:60704220-60704239 None:intergenic 30.0%
CAATCTGACTACAATACAAT+TGG - chr2_1:60704266-60704285 None:intergenic 30.0%
TATTGTAGTCAGATTGAACT+TGG + chr2_1:60704270-60704289 Msa0215460:intron 30.0%
CATGGTTTAATTGAATCAAC+CGG - chr2_1:60704393-60704412 None:intergenic 30.0%
!! ACATCAAGAAGCATTAAAGA+AGG + chr2_1:60704486-60704505 Msa0215460:CDS 30.0%
! CCATCTTTTGTATGTTTTGT+TGG - chr2_1:60704540-60704559 None:intergenic 30.0%
CCAACAAAACATACAAAAGA+TGG + chr2_1:60704537-60704556 Msa0215460:CDS 30.0%
AAGGGAAAGAGAAAAAGAAA+AGG + chr2_1:60704671-60704690 Msa0215460:exon 30.0%
GGATTATGTATTATGTTCCT+TGG + chr2_1:60704714-60704733 Msa0215460:three_prime_UTR 30.0%
!! TTCCTTATCAAAGTTGATGT+GGG + chr2_1:60704754-60704773 Msa0215460:three_prime_UTR 30.0%
TACTCATAACTGTTTGTCAT+GGG - chr2_1:60704781-60704800 None:intergenic 30.0%
TTACTCATAACTGTTTGTCA+TGG - chr2_1:60704782-60704801 None:intergenic 30.0%
GACAAACAGTTATGAGTAAT+TGG + chr2_1:60704783-60704802 Msa0215460:three_prime_UTR 30.0%
AAACAGTTATGAGTAATTGG+AGG + chr2_1:60704786-60704805 Msa0215460:three_prime_UTR 30.0%
AACAGTTATGAGTAATTGGA+GGG + chr2_1:60704787-60704806 Msa0215460:three_prime_UTR 30.0%
CCCAAATAATCACCTTAAAA+AGG - chr2_1:60704872-60704891 None:intergenic 30.0%
! TTAAGGTGATTATTTGGGAT+TGG + chr2_1:60704874-60704893 Msa0215460:three_prime_UTR 30.0%
! CTCAATGATTTTCTTTTTGG+GGG + chr2_1:60704964-60704983 Msa0215460:three_prime_UTR 30.0%
GGGATATATATGTATGGAAA+TGG + chr2_1:60705024-60705043 Msa0215460:three_prime_UTR 30.0%
!!! TTTTCTCCTATTTTTTGTGG+AGG + chr2_1:60705064-60705083 Msa0215460:three_prime_UTR 30.0%
! CTAATAAGGTCCTAAGGTTT+TGG - chr2_1:60701232-60701251 None:intergenic 35.0%
CTTCAAAATCTTGTTCTCTC+GGG - chr2_1:60701456-60701475 None:intergenic 35.0%
CACATACTCATTGGGATTAA+TGG + chr2_1:60701631-60701650 Msa0215460:exon 35.0%
!! ATGGTACTTGGTATTTTAGG+AGG - chr2_1:60701665-60701684 None:intergenic 35.0%
! GGTATGGTACTTGGTATTTT+AGG - chr2_1:60701668-60701687 None:intergenic 35.0%
! GGAAAATATGGCCAATTTTG+GGG - chr2_1:60701689-60701708 None:intergenic 35.0%
! GAGGAAAATATGGCCAATTT+TGG - chr2_1:60701691-60701710 None:intergenic 35.0%
!! ATGATGTTGATGATACCCTT+TGG - chr2_1:60701715-60701734 None:intergenic 35.0%
!! GATGGTCAGAAGTATTATTC+TGG - chr2_1:60701784-60701803 None:intergenic 35.0%
CATGATGGTAATTGTTGTGA+TGG - chr2_1:60701818-60701837 None:intergenic 35.0%
CATCACAACAATTACCATCA+TGG + chr2_1:60701816-60701835 Msa0215460:CDS 35.0%
TGAAGAAAAACCAATGGCAA+TGG + chr2_1:60702105-60702124 Msa0215460:CDS 35.0%
TGATGAAGATAATGCTCTTG+AGG - chr2_1:60702145-60702164 None:intergenic 35.0%
! AGAGCATTATCTTCATCATG+AGG + chr2_1:60702147-60702166 Msa0215460:CDS 35.0%
TGACAGTTCGTGTAAAAATG+AGG + chr2_1:60702198-60702217 Msa0215460:CDS 35.0%
TTCGTGTAAAAATGAGGTAG+CGG + chr2_1:60702204-60702223 Msa0215460:CDS 35.0%
! TTGTTTAGGGTCATGTTAAC+CGG + chr2_1:60702782-60702801 Msa0215460:intron 35.0%
TTGCCTATTAGCCAAAATTC+TGG - chr2_1:60703317-60703336 None:intergenic 35.0%
AGTACATTTCTGAGCTTGAA+AGG + chr2_1:60703368-60703387 Msa0215460:CDS 35.0%
AAATGTGAAAATGAAGACGG+AGG + chr2_1:60703536-60703555 Msa0215460:intron 35.0%
CAGTAAGAATCATACGTTGA+TGG - chr2_1:60703596-60703615 None:intergenic 35.0%
! ATCTTTGAAAAGCTTGTCCT+GGG - chr2_1:60703658-60703677 None:intergenic 35.0%
CTAAAGTGACTAATTCTCAC+AGG - chr2_1:60704007-60704026 None:intergenic 35.0%
! CTGTGAGAATTAGTCACTTT+AGG + chr2_1:60704005-60704024 Msa0215460:intron 35.0%
CCAACTACAAAACGATACTT+AGG - chr2_1:60704072-60704091 None:intergenic 35.0%
!! CCTAAGTATCGTTTTGTAGT+TGG + chr2_1:60704069-60704088 Msa0215460:intron 35.0%
! GTATCGTTTTGTAGTTGGAT+TGG + chr2_1:60704074-60704093 Msa0215460:intron 35.0%
! ATCGTTTTGTAGTTGGATTG+GGG + chr2_1:60704076-60704095 Msa0215460:intron 35.0%
ATTGGGAATGTCGAATTGAA+CGG - chr2_1:60704248-60704267 None:intergenic 35.0%
AGGATAAACTAGTTGAACCA+TGG + chr2_1:60704312-60704331 Msa0215460:intron 35.0%
AACCATGGTTGAATCAAAGT+TGG + chr2_1:60704327-60704346 Msa0215460:intron 35.0%
AACCAACTTTGATTCAACCA+TGG - chr2_1:60704332-60704351 None:intergenic 35.0%
AGAAGGAAATAGAAAGGTTG+AGG + chr2_1:60704503-60704522 Msa0215460:CDS 35.0%
! TGATGGAAAGATTGTTGTTG+TGG - chr2_1:60704628-60704647 None:intergenic 35.0%
! TTTTCTCTTTCCCTTAACTG+AGG - chr2_1:60704666-60704685 None:intergenic 35.0%
TAAGGAACACATCACATGTT+AGG - chr2_1:60704741-60704760 None:intergenic 35.0%
!! GTTCCTTATCAAAGTTGATG+TGG + chr2_1:60704753-60704772 Msa0215460:three_prime_UTR 35.0%
!! TCCTTATCAAAGTTGATGTG+GGG + chr2_1:60704755-60704774 Msa0215460:three_prime_UTR 35.0%
!! GTGATTATTTGGGATTGGTT+TGG + chr2_1:60704879-60704898 Msa0215460:three_prime_UTR 35.0%
!! AATGATTTTCTTTTTGGGGG+TGG + chr2_1:60704967-60704986 Msa0215460:three_prime_UTR 35.0%
TAAGGAGGGACAAAATATAG+TGG + chr2_1:60704992-60705011 Msa0215460:three_prime_UTR 35.0%
AAGGAGGGACAAAATATAGT+GGG + chr2_1:60704993-60705012 Msa0215460:three_prime_UTR 35.0%
TACATGACACAATATGGTGC+AGG + chr2_1:60701360-60701379 Msa0215460:five_prime_UTR 40.0%
ATTTGCGGTTGTTTGTGTGT+TGG + chr2_1:60701481-60701500 Msa0215460:five_prime_UTR 40.0%
! GGGTGTTTAGCCGAAATTTT+TGG - chr2_1:60701594-60701613 None:intergenic 40.0%
GCTAAACACCCTCTATATCT+GGG + chr2_1:60701603-60701622 Msa0215460:five_prime_UTR 40.0%
CTAAACACCCTCTATATCTG+GGG + chr2_1:60701604-60701623 Msa0215460:five_prime_UTR 40.0%
!!! CAATTTTGGGGTATGGTACT+TGG - chr2_1:60701677-60701696 None:intergenic 40.0%
CAAGTACCATACCCCAAAAT+TGG + chr2_1:60701675-60701694 Msa0215460:CDS 40.0%
!!! ATATGGCCAATTTTGGGGTA+TGG - chr2_1:60701684-60701703 None:intergenic 40.0%
! GCCATATTTTCCTCACCAAA+GGG + chr2_1:60701697-60701716 Msa0215460:CDS 40.0%
ACCCTTTGGTGAGGAAAATA+TGG - chr2_1:60701701-60701720 None:intergenic 40.0%
!! AGAAGTATTATTCTGGGTGG+TGG - chr2_1:60701777-60701796 None:intergenic 40.0%
!! GTCAGAAGTATTATTCTGGG+TGG - chr2_1:60701780-60701799 None:intergenic 40.0%
GATGGTAATTGTTGTGATGG+TGG - chr2_1:60701815-60701834 None:intergenic 40.0%
AGGAATTCGTCTATCCATGA+TGG - chr2_1:60701833-60701852 None:intergenic 40.0%
ATGTTCTCTGACAATGTTGC+CGG + chr2_1:60702004-60702023 Msa0215460:CDS 40.0%
!!! GTTATTGCTATTTTGGTCGG+AGG - chr2_1:60702083-60702102 None:intergenic 40.0%
AAAACCAATGGCAATGGTGT+TGG + chr2_1:60702111-60702130 Msa0215460:CDS 40.0%
! GATTACCTTTTGACCCTCTT+GGG - chr2_1:60702283-60702302 None:intergenic 40.0%
! AGATTACCTTTTGACCCTCT+TGG - chr2_1:60702284-60702303 None:intergenic 40.0%
ATAAATAGAACGTGCATGGG+TGG - chr2_1:60702375-60702394 None:intergenic 40.0%
GTTGCCACAAAATTCTTGCA+TGG + chr2_1:60702436-60702455 Msa0215460:intron 40.0%
! CCATCCATGCAAGAATTTTG+TGG - chr2_1:60702443-60702462 None:intergenic 40.0%
CCACAAAATTCTTGCATGGA+TGG + chr2_1:60702440-60702459 Msa0215460:intron 40.0%
! AAGGAGTGTAACATCTTTGC+AGG + chr2_1:60703387-60703406 Msa0215460:CDS 40.0%
ACAACAGTGCCATAAAGCAA+CGG + chr2_1:60703619-60703638 Msa0215460:CDS 40.0%
! CATCTTTGAAAAGCTTGTCC+TGG - chr2_1:60703659-60703678 None:intergenic 40.0%
! CAGGACAAGCTTTTCAAAGA+TGG + chr2_1:60703657-60703676 Msa0215460:CDS 40.0%
! TCGAATTGAACGGTTTTCGT+TGG - chr2_1:60704238-60704257 None:intergenic 40.0%
ATCGAACTAGTGAGACATCT+GGG - chr2_1:60704417-60704436 None:intergenic 40.0%
ACAATCTTTCCATCAGCACA+AGG + chr2_1:60704633-60704652 Msa0215460:CDS 40.0%
AAGGAGCAAATCCTCAGTTA+AGG + chr2_1:60704652-60704671 Msa0215460:CDS 40.0%
AGGAGCAAATCCTCAGTTAA+GGG + chr2_1:60704653-60704672 Msa0215460:CDS 40.0%
GTTATGAGTAATTGGAGGGT+AGG + chr2_1:60704791-60704810 Msa0215460:three_prime_UTR 40.0%
TAGGAAGTTGACATGTGGAT+TGG + chr2_1:60704810-60704829 Msa0215460:three_prime_UTR 40.0%
!! TTCTTTTTGGGGGTGGAATA+AGG + chr2_1:60704974-60704993 Msa0215460:three_prime_UTR 40.0%
!!! CTCCTATTTTTTGTGGAGGA+AGG + chr2_1:60705068-60705087 Msa0215460:three_prime_UTR 40.0%
CACCTTCCTCCACAAAAAAT+AGG - chr2_1:60705073-60705092 None:intergenic 40.0%
!!! CTATTTTTTGTGGAGGAAGG+TGG + chr2_1:60705071-60705090 Msa0215460:three_prime_UTR 40.0%
!!! CTAAGGTTTTGGAGAGAGAG+TGG - chr2_1:60701221-60701240 None:intergenic 45.0%
CACTCTCTCTCCAAAACCTT+AGG + chr2_1:60701219-60701238 Msa0215460:five_prime_UTR 45.0%
! CTCGGGCTTCTAAAAGTAGT+GGG - chr2_1:60701439-60701458 None:intergenic 45.0%
! TCTCGGGCTTCTAAAAGTAG+TGG - chr2_1:60701440-60701459 None:intergenic 45.0%
!! CGGTTGTTTGTGTGTTGGTT+AGG + chr2_1:60701486-60701505 Msa0215460:five_prime_UTR 45.0%
GGCTAAACACCCTCTATATC+TGG + chr2_1:60701602-60701621 Msa0215460:five_prime_UTR 45.0%
GTGTGAACCCCAGATATAGA+GGG - chr2_1:60701614-60701633 None:intergenic 45.0%
TGTGTGAACCCCAGATATAG+AGG - chr2_1:60701615-60701634 None:intergenic 45.0%
TGGGGTTCACACATACTCAT+TGG + chr2_1:60701622-60701641 Msa0215460:five_prime_UTR 45.0%
GGGGTTCACACATACTCATT+GGG + chr2_1:60701623-60701642 Msa0215460:five_prime_UTR 45.0%
! GGCCATATTTTCCTCACCAA+AGG + chr2_1:60701696-60701715 Msa0215460:CDS 45.0%
!! GTTGATGATACCCTTTGGTG+AGG - chr2_1:60701710-60701729 None:intergenic 45.0%
GGAGGTGATGTTTGACATTG+TGG - chr2_1:60701738-60701757 None:intergenic 45.0%
! ATTATTCTGGGTGGTGGTTG+TGG - chr2_1:60701771-60701790 None:intergenic 45.0%
!! GTGATGGTGGTGATTGTTGA+TGG - chr2_1:60701802-60701821 None:intergenic 45.0%
GAGAAATGATGTCTCGAGGA+AGG - chr2_1:60701912-60701931 None:intergenic 45.0%
TGGTGGAGGATTTGATAGAC+TGG + chr2_1:60701961-60701980 Msa0215460:CDS 45.0%
GGCAACATTGTCAGAGAACA+TGG - chr2_1:60702005-60702024 None:intergenic 45.0%
!!! TTGCTATTTTGGTCGGAGGA+TGG - chr2_1:60702079-60702098 None:intergenic 45.0%
TCATCATGAGGTGAAGCCTA+AGG + chr2_1:60702159-60702178 Msa0215460:CDS 45.0%
ACACGAACTGTCATCATCGA+CGG - chr2_1:60702191-60702210 None:intergenic 45.0%
! GTGTAAAAATGAGGTAGCGG+CGG + chr2_1:60702207-60702226 Msa0215460:CDS 45.0%
TTCAGTGCAGGTGATGTTTC+CGG - chr2_1:60702248-60702267 None:intergenic 45.0%
CCACGTACCCTCAATTAACA+GGG - chr2_1:60702533-60702552 None:intergenic 45.0%
! TTGGTGCTTAACCAATGCTC+TGG + chr2_1:60702920-60702939 Msa0215460:intron 45.0%
TGGTGCTTAACCAATGCTCT+GGG + chr2_1:60702921-60702940 Msa0215460:intron 45.0%
CTAATAGGCAATCAGCTCAG+AGG + chr2_1:60703326-60703345 Msa0215460:CDS 45.0%
! TGCTGCAATCCGTTGCTTTA+TGG - chr2_1:60703631-60703650 None:intergenic 45.0%
!! AAAGCAACGGATTGCAGCAT+TGG + chr2_1:60703632-60703651 Msa0215460:CDS 45.0%
GATCGAACTAGTGAGACATC+TGG - chr2_1:60704418-60704437 None:intergenic 45.0%
TGTTGTTGTGGCTGTGATGT+TGG - chr2_1:60704616-60704635 None:intergenic 45.0%
CACATCACATGTTAGGACCA+AGG - chr2_1:60704734-60704753 None:intergenic 45.0%
GCCCCACATCAACTTTGATA+AGG - chr2_1:60704759-60704778 None:intergenic 45.0%
!! TTTTTGGGGGTGGAATAAGG+AGG + chr2_1:60704977-60704996 Msa0215460:three_prime_UTR 45.0%
!! TTTTGGGGGTGGAATAAGGA+GGG + chr2_1:60704978-60704997 Msa0215460:three_prime_UTR 45.0%
!! ATATTTCATATAATAAAATA+AGG + chr2_1:60702396-60702415 Msa0215460:intron 5.0%
!! AGAAATATATATAATAAATT+AGG - chr2_1:60703690-60703709 None:intergenic 5.0%
!!! CAATATTTTAAAAATTAAAT+GGG - chr2_1:60704442-60704461 None:intergenic 5.0%
!!! TCAATATTTTAAAAATTAAA+TGG - chr2_1:60704443-60704462 None:intergenic 5.0%
TCCTCGACTTCTCCTCGATA+AGG + chr2_1:60701849-60701868 Msa0215460:CDS 50.0%
ACTTCTCCTCGATAAGGCGT+GGG + chr2_1:60701855-60701874 Msa0215460:CDS 50.0%
GAGGAAGGCAATAGAGTCAC+TGG - chr2_1:60701897-60701916 None:intergenic 50.0%
CCTCGAGAAATGATGTCTCG+AGG - chr2_1:60701916-60701935 None:intergenic 50.0%
CCTCGAGACATCATTTCTCG+AGG + chr2_1:60701913-60701932 Msa0215460:CDS 50.0%
CATTTCTCGAGGAAGACTGC+AGG + chr2_1:60701924-60701943 Msa0215460:CDS 50.0%
GCATCCAACACCATTGCCAT+TGG - chr2_1:60702118-60702137 None:intergenic 50.0%
TCATCGACGGCTTCATCCTT+AGG - chr2_1:60702178-60702197 None:intergenic 50.0%
GTGATGTTTCCGGAGGATGA+TGG - chr2_1:60702238-60702257 None:intergenic 50.0%
ATCCACAACGGTTTCAGTGC+AGG - chr2_1:60702260-60702279 None:intergenic 50.0%
AAACCGTTGTGGATCCCAAG+AGG + chr2_1:60702266-60702285 Msa0215460:CDS 50.0%
AACCGTTGTGGATCCCAAGA+GGG + chr2_1:60702267-60702286 Msa0215460:CDS 50.0%
TGGATCCCAAGAGGGTCAAA+AGG + chr2_1:60702275-60702294 Msa0215460:CDS 50.0%
AATAGAACGTGCATGGGTGG+TGG - chr2_1:60702372-60702391 None:intergenic 50.0%
! CCCTGTTAATTGAGGGTACG+TGG + chr2_1:60702530-60702549 Msa0215460:intron 50.0%
GCCACGTACCCTCAATTAAC+AGG - chr2_1:60702534-60702553 None:intergenic 50.0%
GGTGCTTAACCAATGCTCTG+GGG + chr2_1:60702922-60702941 Msa0215460:intron 50.0%
GTGCTTAACCAATGCTCTGG+GGG + chr2_1:60702923-60702942 Msa0215460:intron 50.0%
GCAATCAGCTCAGAGGTCAA+GGG + chr2_1:60703333-60703352 Msa0215460:CDS 50.0%
GTCACCACGAGTTGCATTCT+TGG + chr2_1:60703569-60703588 Msa0215460:CDS 50.0%
TGGTCCAAGAATGCAACTCG+TGG - chr2_1:60703576-60703595 None:intergenic 50.0%
CTAGTGAGACATCTGGGTCA+TGG - chr2_1:60704411-60704430 None:intergenic 50.0%
TGTGGCTGTGATGTTGGTGT+TGG - chr2_1:60704610-60704629 None:intergenic 50.0%
! GGATTTGCTCCTTGTGCTGA+TGG - chr2_1:60704645-60704664 None:intergenic 50.0%
GAGGGTAGGAAGTTGACATG+TGG + chr2_1:60704805-60704824 Msa0215460:three_prime_UTR 50.0%
GTGGGAGACAAGAGAGAGAG+AGG - chr2_1:60701421-60701440 None:intergenic 55.0%
GCCTTATCGAGGAGAAGTCG+AGG - chr2_1:60701853-60701872 None:intergenic 55.0%
GACTTCTCCTCGATAAGGCG+TGG + chr2_1:60701854-60701873 Msa0215460:CDS 55.0%
CTTCTCCTCGATAAGGCGTG+GGG + chr2_1:60701856-60701875 Msa0215460:CDS 55.0%
CAAAGGCGGGAAAGATACGC+CGG - chr2_1:60702026-60702045 None:intergenic 55.0%
TCGATGACAACGGCAAAGGC+GGG - chr2_1:60702039-60702058 None:intergenic 55.0%
GTCGATGACAACGGCAAAGG+CGG - chr2_1:60702040-60702059 None:intergenic 55.0%
GACGTCGATGACAACGGCAA+AGG - chr2_1:60702043-60702062 None:intergenic 55.0%
GGGTTGGACGTCGATGACAA+CGG - chr2_1:60702049-60702068 None:intergenic 55.0%
AGTGCAGGTGATGTTTCCGG+AGG - chr2_1:60702245-60702264 None:intergenic 55.0%
CACCTGCACTGAAACCGTTG+TGG + chr2_1:60702255-60702274 Msa0215460:CDS 55.0%
GACCCTCTTGGGATCCACAA+CGG - chr2_1:60702272-60702291 None:intergenic 55.0%
ATTCCTTAACCAGTGCCCCG+GGG - chr2_1:60702810-60702829 None:intergenic 55.0%
GATTCCTTAACCAGTGCCCC+GGG - chr2_1:60702811-60702830 None:intergenic 55.0%
GGATTCCTTAACCAGTGCCC+CGG - chr2_1:60702812-60702831 None:intergenic 55.0%
AAACAGTGCCCCCAGAGCAT+TGG - chr2_1:60702934-60702953 None:intergenic 55.0%
GGCAATCAGCTCAGAGGTCA+AGG + chr2_1:60703332-60703351 Msa0215460:CDS 55.0%
CTCGAGGAAGACTGCAGGAG+TGG + chr2_1:60701929-60701948 Msa0215460:CDS 60.0%
GAGGAAGACTGCAGGAGTGG+TGG + chr2_1:60701932-60701951 Msa0215460:CDS 60.0%
GAAGACTGCAGGAGTGGTGG+TGG + chr2_1:60701935-60701954 Msa0215460:CDS 60.0%
! GGAGGATGGTGACGATGGGT+TGG - chr2_1:60702065-60702084 None:intergenic 60.0%
! GGTCGGAGGATGGTGACGAT+GGG - chr2_1:60702069-60702088 None:intergenic 60.0%
! TGGTCGGAGGATGGTGACGA+TGG - chr2_1:60702070-60702089 None:intergenic 60.0%
!! CGTGCATGGGTGGTGGAGAT+TGG - chr2_1:60702365-60702384 None:intergenic 60.0%
GGTCATGTTAACCGGTGCCC+CGG + chr2_1:60702790-60702809 Msa0215460:intron 60.0%
GTCATGTTAACCGGTGCCCC+GGG + chr2_1:60702791-60702810 Msa0215460:intron 60.0%
TCATGTTAACCGGTGCCCCG+GGG + chr2_1:60702792-60702811 Msa0215460:intron 60.0%
!! ACGGATTGCAGCATTGGCCC+AGG + chr2_1:60703638-60703657 Msa0215460:CDS 60.0%
!! GGTTGTGGTCGTGGTGGTGG+AGG - chr2_1:60701756-60701775 None:intergenic 65.0%
GGTGGTTGTGGTCGTGGTGG+TGG - chr2_1:60701759-60701778 None:intergenic 65.0%
! GGTGGTGGTTGTGGTCGTGG+TGG - chr2_1:60701762-60701781 None:intergenic 65.0%
! CTGGGTGGTGGTTGTGGTCG+TGG - chr2_1:60701765-60701784 None:intergenic 65.0%
GTGAGCCCCACGCCTTATCG+AGG - chr2_1:60701864-60701883 None:intergenic 65.0%
CGATAAGGCGTGGGGCTCAC+AGG + chr2_1:60701864-60701883 Msa0215460:CDS 65.0%
TAAGGCGTGGGGCTCACAGG+CGG + chr2_1:60701867-60701886 Msa0215460:CDS 65.0%
!! GACTGCAGGAGTGGTGGTGG+CGG + chr2_1:60701938-60701957 Msa0215460:CDS 65.0%
GCGGCAGCACCATCATCCTC+CGG + chr2_1:60702226-60702245 Msa0215460:CDS 65.0%
!! TGCAGGAGTGGTGGTGGCGG+TGG + chr2_1:60701941-60701960 Msa0215460:CDS 70.0%
!! AGGAGTGGTGGTGGCGGTGG+TGG + chr2_1:60701944-60701963 Msa0215460:CDS 70.0%
!! AGTGGTGGTGGCGGTGGTGG+AGG + chr2_1:60701947-60701966 Msa0215460:CDS 70.0%
TAACCAGTGCCCCGGGGCAC+CGG - chr2_1:60702804-60702823 None:intergenic 70.0%
!! GTGCCCCGGGGCACTGGTTA+AGG + chr2_1:60702804-60702823 Msa0215460:intron 70.0%
TAACCGGTGCCCCGGGGCAC+TGG + chr2_1:60702798-60702817 Msa0215460:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 60701218 60705151 60701218 ID=Msa0215460;Name=Msa0215460
chr2_1 mRNA 60701218 60705151 60701218 ID=Msa0215460-mRNA-1;Parent=Msa0215460;Name=Msa0215460-mRNA-1;_AED=0.03;_eAED=0.03;_QI=432|1|1|1|1|1|4|479|350
chr2_1 exon 60701218 60702296 60701218 ID=Msa0215460-mRNA-1:exon:16678;Parent=Msa0215460-mRNA-1
chr2_1 exon 60703318 60703408 60703318 ID=Msa0215460-mRNA-1:exon:16679;Parent=Msa0215460-mRNA-1
chr2_1 exon 60703552 60703678 60703552 ID=Msa0215460-mRNA-1:exon:16680;Parent=Msa0215460-mRNA-1
chr2_1 exon 60704485 60705151 60704485 ID=Msa0215460-mRNA-1:exon:16681;Parent=Msa0215460-mRNA-1
chr2_1 five_prime_UTR 60701218 60701649 60701218 ID=Msa0215460-mRNA-1:five_prime_utr;Parent=Msa0215460-mRNA-1
chr2_1 CDS 60701650 60702296 60701650 ID=Msa0215460-mRNA-1:cds;Parent=Msa0215460-mRNA-1
chr2_1 CDS 60703318 60703408 60703318 ID=Msa0215460-mRNA-1:cds;Parent=Msa0215460-mRNA-1
chr2_1 CDS 60703552 60703678 60703552 ID=Msa0215460-mRNA-1:cds;Parent=Msa0215460-mRNA-1
chr2_1 CDS 60704485 60704672 60704485 ID=Msa0215460-mRNA-1:cds;Parent=Msa0215460-mRNA-1
chr2_1 three_prime_UTR 60704673 60705151 60704673 ID=Msa0215460-mRNA-1:three_prime_utr;Parent=Msa0215460-mRNA-1
Gene Sequence

>Msa0215460

ATGGCACAGTTACCTCCTAAAATACCAAGTACCATACCCCAAAATTGGCCATATTTTCCTCACCAAAGGGTATCATCAACATCATCCACAATGTCAAACATCACCTCCACCACCACGACCACAACCACCACCCAGAATAATACTTCTGACCATCAACAATCACCACCATCACAACAATTACCATCATGGATAGACGAATTCCTCGACTTCTCCTCGATAAGGCGTGGGGCTCACAGGCGGTCTGCCAGTGACTCTATTGCCTTCCTCGAGACATCATTTCTCGAGGAAGACTGCAGGAGTGGTGGTGGCGGTGGTGGAGGATTTGATAGACTGGATGATGACCAATTAATATCCATGTTCTCTGACAATGTTGCCGGCGTATCTTTCCCGCCTTTGCCGTTGTCATCGACGTCCAACCCATCGTCACCATCCTCCGACCAAAATAGCAATAACAATGAAGAAAAACCAATGGCAATGGTGTTGGATGCACAACCTCAAGAGCATTATCTTCATCATGAGGTGAAGCCTAAGGATGAAGCCGTCGATGATGACAGTTCGTGTAAAAATGAGGTAGCGGCGGCAGCACCATCATCCTCCGGAAACATCACCTGCACTGAAACCGTTGTGGATCCCAAGAGGGTCAAAAGAATTTTGGCTAATAGGCAATCAGCTCAGAGGTCAAGGGTGAGAAAACTACAGTACATTTCTGAGCTTGAAAGGAGTGTAACATCTTTGCAGACGGAGGTTTCAGCACTGTCACCACGAGTTGCATTCTTGGACCATCAACGTATGATTCTTACTGTCGACAACAGTGCCATAAAGCAACGGATTGCAGCATTGGCCCAGGACAAGCTTTTCAAAGATGCACATCAAGAAGCATTAAAGAAGGAAATAGAAAGGTTGAGGCAAATCTATCACCAACAAAACATACAAAAGATGGGAAATTCAGTTAATAGTAACATTAACAATGGTCATTCTCTTCAATCTCCAACACCAACATCACAGCCACAACAACAATCTTTCCATCAGCACAAGGAGCAAATCCTCAGTTAA
Protein sequence

>Msa0215460

MAQLPPKIPSTIPQNWPYFPHQRVSSTSSTMSNITSTTTTTTTTQNNTSDHQQSPPSQQLPSWIDEFLDFSSIRRGAHRRSASDSIAFLETSFLEEDCRSGGGGGGGFDRLDDDQLISMFSDNVAGVSFPPLPLSSTSNPSSPSSDQNSNNNEEKPMAMVLDAQPQEHYLHHEVKPKDEAVDDDSSCKNEVAAAAPSSSGNITCTETVVDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSALSPRVAFLDHQRMILTVDNSAIKQRIAALAQDKLFKDAHQEALKKEIERLRQIYHQQNIQKMGNSVNSNINNGHSLQSPTPTSQPQQQSFHQHKEQILS*