Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0215580 | XP_013464662.2 | 93.220 | 177 | 12 | 0 | 1 | 177 | 36 | 212 | 3.92e-104 | 307 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0215580 | sp|Q38741|SBP1_ANTMA | 60.177 | 113 | 41 | 1 | 30 | 142 | 22 | 130 | 8.29e-39 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0215580 | A0A072VA58 | 94.737 | 171 | 9 | 0 | 7 | 177 | 1 | 171 | 4.33e-101 | 297 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0215580 | TF | SBP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0215580 | MtrunA17_Chr2g0317041 | 91.818 | 110 | 9 | 0 | 1 | 110 | 36 | 145 | 1.65e-56 | 175 |
| Msa0215580 | MtrunA17_Chr8g0360361 | 68.333 | 120 | 36 | 1 | 60 | 177 | 61 | 180 | 1.79e-51 | 163 |
| Msa0215580 | MtrunA17_Chr2g0317031 | 95.522 | 67 | 3 | 0 | 111 | 177 | 9 | 75 | 3.00e-42 | 136 |
| Msa0215580 | MtrunA17_Chr2g0282521 | 60.952 | 105 | 39 | 1 | 38 | 140 | 36 | 140 | 3.14e-38 | 128 |
| Msa0215580 | MtrunA17_Chr4g0046991 | 67.391 | 92 | 30 | 0 | 48 | 139 | 57 | 148 | 4.02e-38 | 128 |
| Msa0215580 | MtrunA17_Chr8g0334671 | 61.765 | 102 | 39 | 0 | 37 | 138 | 160 | 261 | 4.76e-36 | 127 |
| Msa0215580 | MtrunA17_Chr3g0122411 | 64.045 | 89 | 32 | 0 | 49 | 137 | 150 | 238 | 8.30e-36 | 129 |
| Msa0215580 | MtrunA17_Chr7g0258471 | 72.727 | 77 | 21 | 0 | 61 | 137 | 139 | 215 | 1.70e-34 | 125 |
| Msa0215580 | MtrunA17_Chr2g0302791 | 67.442 | 86 | 28 | 0 | 64 | 149 | 139 | 224 | 1.73e-34 | 128 |
| Msa0215580 | MtrunA17_Chr7g0270541 | 67.391 | 92 | 30 | 0 | 56 | 147 | 137 | 228 | 3.39e-34 | 127 |
| Msa0215580 | MtrunA17_Chr1g0194121 | 62.376 | 101 | 38 | 0 | 49 | 149 | 132 | 232 | 4.32e-34 | 127 |
| Msa0215580 | MtrunA17_Chr7g0231911 | 63.158 | 95 | 35 | 0 | 56 | 150 | 141 | 235 | 1.02e-33 | 121 |
| Msa0215580 | MtrunA17_Chr2g0308321 | 59.813 | 107 | 42 | 1 | 63 | 169 | 170 | 275 | 1.44e-33 | 124 |
| Msa0215580 | MtrunA17_Chr5g0420051 | 58.947 | 95 | 39 | 0 | 62 | 156 | 179 | 273 | 2.92e-32 | 119 |
| Msa0215580 | MtrunA17_Chr4g0061651 | 70.667 | 75 | 22 | 0 | 63 | 137 | 122 | 196 | 3.66e-32 | 119 |
| Msa0215580 | MtrunA17_Chr1g0162871 | 70.130 | 77 | 23 | 0 | 62 | 138 | 102 | 178 | 3.53e-31 | 118 |
| Msa0215580 | MtrunA17_Chr8g0377401 | 59.756 | 82 | 33 | 0 | 61 | 142 | 159 | 240 | 2.58e-30 | 111 |
| Msa0215580 | MtrunA17_Chr3g0132091 | 54.839 | 93 | 42 | 0 | 64 | 156 | 73 | 165 | 2.72e-30 | 113 |
| Msa0215580 | MtrunA17_Chr8g0377421 | 42.424 | 132 | 74 | 2 | 7 | 137 | 75 | 205 | 2.25e-29 | 109 |
| Msa0215580 | MtrunA17_Chr7g0224821 | 51.485 | 101 | 48 | 1 | 63 | 163 | 76 | 175 | 4.21e-29 | 110 |
| Msa0215580 | MtrunA17_Chr8g0386271 | 60.714 | 84 | 33 | 0 | 64 | 147 | 99 | 182 | 1.05e-28 | 109 |
| Msa0215580 | MtrunA17_Chr2g0286661 | 55.405 | 74 | 33 | 0 | 64 | 137 | 103 | 176 | 1.01e-23 | 97.1 |
| Msa0215580 | MtrunA17_Chr1g0175031 | 62.963 | 54 | 20 | 0 | 57 | 110 | 67 | 120 | 5.21e-17 | 73.6 |
| Msa0215580 | MtrunA17_Chr8g0377431 | 56.897 | 58 | 25 | 0 | 62 | 119 | 149 | 206 | 5.04e-16 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0215580 | AT1G53160.3 | 63.551 | 107 | 36 | 2 | 50 | 156 | 42 | 145 | 5.41e-39 | 131 |
| Msa0215580 | AT1G53160.2 | 65.049 | 103 | 33 | 2 | 54 | 156 | 46 | 145 | 9.50e-39 | 130 |
| Msa0215580 | AT1G53160.1 | 65.049 | 103 | 33 | 2 | 54 | 156 | 46 | 145 | 9.50e-39 | 130 |
| Msa0215580 | AT3G15270.1 | 51.351 | 148 | 65 | 2 | 7 | 148 | 1 | 147 | 1.51e-38 | 130 |
| Msa0215580 | AT1G02065.1 | 61.321 | 106 | 37 | 2 | 50 | 151 | 171 | 276 | 9.16e-37 | 130 |
| Msa0215580 | AT2G33810.1 | 71.250 | 80 | 23 | 0 | 60 | 139 | 50 | 129 | 6.82e-36 | 122 |
| Msa0215580 | AT1G69170.1 | 56.731 | 104 | 45 | 0 | 34 | 137 | 94 | 197 | 2.99e-35 | 127 |
| Msa0215580 | AT3G60030.1 | 62.136 | 103 | 34 | 2 | 64 | 166 | 127 | 224 | 1.26e-34 | 129 |
| Msa0215580 | AT1G20980.1 | 60.784 | 102 | 38 | 1 | 54 | 155 | 112 | 211 | 8.57e-34 | 126 |
| Msa0215580 | AT2G42200.1 | 68.675 | 83 | 26 | 0 | 62 | 144 | 72 | 154 | 1.85e-33 | 122 |
| Msa0215580 | AT2G47070.1 | 55.963 | 109 | 46 | 1 | 64 | 172 | 106 | 212 | 8.68e-33 | 123 |
| Msa0215580 | AT5G43270.3 | 61.798 | 89 | 34 | 0 | 58 | 146 | 163 | 251 | 4.17e-32 | 119 |
| Msa0215580 | AT5G43270.1 | 61.798 | 89 | 34 | 0 | 58 | 146 | 163 | 251 | 4.17e-32 | 119 |
| Msa0215580 | AT5G43270.2 | 61.798 | 89 | 34 | 0 | 58 | 146 | 163 | 251 | 4.17e-32 | 119 |
| Msa0215580 | AT1G76580.1 | 54.717 | 106 | 47 | 1 | 62 | 167 | 112 | 216 | 9.92e-32 | 120 |
| Msa0215580 | AT1G76580.3 | 54.717 | 106 | 47 | 1 | 62 | 167 | 112 | 216 | 4.95e-31 | 118 |
| Msa0215580 | AT1G76580.2 | 54.717 | 106 | 47 | 1 | 62 | 167 | 112 | 216 | 5.70e-31 | 118 |
| Msa0215580 | AT3G57920.1 | 67.089 | 79 | 26 | 0 | 64 | 142 | 59 | 137 | 6.06e-31 | 115 |
| Msa0215580 | AT1G27370.6 | 57.143 | 91 | 39 | 0 | 47 | 137 | 159 | 249 | 3.89e-30 | 112 |
| Msa0215580 | AT1G27370.1 | 57.143 | 91 | 39 | 0 | 47 | 137 | 159 | 249 | 1.11e-29 | 112 |
| Msa0215580 | AT1G27370.5 | 57.143 | 91 | 39 | 0 | 47 | 137 | 159 | 249 | 1.11e-29 | 112 |
| Msa0215580 | AT1G27370.3 | 57.143 | 91 | 39 | 0 | 47 | 137 | 159 | 249 | 1.11e-29 | 112 |
| Msa0215580 | AT1G27370.2 | 57.143 | 91 | 39 | 0 | 47 | 137 | 159 | 249 | 1.11e-29 | 112 |
| Msa0215580 | AT1G27370.4 | 57.143 | 91 | 39 | 0 | 47 | 137 | 159 | 249 | 1.11e-29 | 112 |
| Msa0215580 | AT1G27370.7 | 57.143 | 91 | 39 | 0 | 47 | 137 | 159 | 249 | 1.11e-29 | 112 |
| Msa0215580 | AT5G50570.1 | 63.158 | 76 | 28 | 0 | 62 | 137 | 99 | 174 | 7.77e-29 | 109 |
| Msa0215580 | AT5G50570.2 | 63.158 | 76 | 28 | 0 | 62 | 137 | 99 | 174 | 7.77e-29 | 109 |
| Msa0215580 | AT5G50670.1 | 63.158 | 76 | 28 | 0 | 62 | 137 | 99 | 174 | 7.77e-29 | 109 |
| Msa0215580 | AT5G50670.2 | 63.158 | 76 | 28 | 0 | 62 | 137 | 99 | 174 | 7.77e-29 | 109 |
| Msa0215580 | AT1G27360.2 | 60.976 | 82 | 32 | 0 | 56 | 137 | 167 | 248 | 9.01e-29 | 110 |
| Msa0215580 | AT1G27360.1 | 60.976 | 82 | 32 | 0 | 56 | 137 | 167 | 248 | 9.01e-29 | 110 |
| Msa0215580 | AT1G27360.3 | 60.976 | 82 | 32 | 0 | 56 | 137 | 167 | 248 | 9.01e-29 | 110 |
| Msa0215580 | AT1G27360.4 | 60.976 | 82 | 32 | 0 | 56 | 137 | 167 | 248 | 9.01e-29 | 110 |
| Msa0215580 | AT5G18830.2 | 47.368 | 95 | 47 | 1 | 64 | 155 | 138 | 232 | 6.64e-22 | 92.4 |
| Msa0215580 | AT5G18830.1 | 47.368 | 95 | 47 | 1 | 64 | 155 | 138 | 232 | 6.75e-22 | 92.4 |
| Msa0215580 | AT5G18830.3 | 47.368 | 95 | 47 | 1 | 64 | 155 | 138 | 232 | 7.31e-22 | 92.0 |
| Msa0215580 | AT1G02065.2 | 60.811 | 74 | 24 | 2 | 50 | 118 | 171 | 244 | 1.39e-21 | 88.6 |
| Msa0215580 | AT2G47070.2 | 74.510 | 51 | 13 | 0 | 88 | 138 | 1 | 51 | 6.99e-20 | 86.7 |
Find 36 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTTTCTACTTGACAAAA+AGG | 0.293853 | 2_1:-60899696 | None:intergenic |
| GCATCTGTTGTGGTGGTTGC+AGG | 0.368915 | 2_1:+60899786 | Msa0215580:CDS |
| AATGAACCTCACAAACCTTA+TGG | 0.389353 | 2_1:-60899758 | None:intergenic |
| AAACATCAGTTGAGAAGGTT+TGG | 0.391376 | 2_1:+60899544 | Msa0215580:CDS |
| GATCACACCTGCTACATTGT+TGG | 0.396569 | 2_1:-60899827 | None:intergenic |
| ATGAACATAACAAGTAGTTC+TGG | 0.412406 | 2_1:+60902395 | Msa0215580:CDS |
| AGCAAAATCATGATGGTGAT+TGG | 0.426111 | 2_1:+60902360 | Msa0215580:CDS |
| TGCACTGAAGGAAGCGGTAC+TGG | 0.443322 | 2_1:+60902335 | Msa0215580:CDS |
| AAGAAAGGTGTTTGTGTGAG+TGG | 0.453403 | 2_1:+60899636 | Msa0215580:CDS |
| AACCACCACAACAGATGCTT+TGG | 0.458273 | 2_1:-60899781 | None:intergenic |
| TTGTGGTGGTTGCAGGGATA+AGG | 0.463071 | 2_1:+60899793 | Msa0215580:CDS |
| CGGCGTCGTAAAAGCACTGC+TGG | 0.466987 | 2_1:+60902308 | Msa0215580:CDS |
| AGAAATAGAAGTTGAAGAAG+AGG | 0.475722 | 2_1:+60899584 | Msa0215580:CDS |
| GAAAATCTTCCACCTCTACT+TGG | 0.489950 | 2_1:-60899669 | None:intergenic |
| GAGATATCATCGTCGCCATA+AGG | 0.496552 | 2_1:+60899743 | Msa0215580:CDS |
| GGAAGCAAGGAATACAATAG+AGG | 0.502654 | 2_1:+60899515 | Msa0215580:CDS |
| GAAGCAAGGAATACAATAGA+GGG | 0.522960 | 2_1:+60899516 | Msa0215580:CDS |
| GTTGAAGAAGAGGAGGAAGG+TGG | 0.527678 | 2_1:+60899594 | Msa0215580:CDS |
| ACTGCTGGAACTTGCACTGA+AGG | 0.529046 | 2_1:+60902323 | Msa0215580:CDS |
| GAAGTTGAAGAAGAGGAGGA+AGG | 0.550030 | 2_1:+60899591 | Msa0215580:CDS |
| AATAGAAGTTGAAGAAGAGG+AGG | 0.552525 | 2_1:+60899587 | Msa0215580:CDS |
| AGAAAGGTGTTTGTGTGAGT+GGG | 0.554222 | 2_1:+60899637 | Msa0215580:CDS |
| TTCCAAAGCATCTGTTGTGG+TGG | 0.554775 | 2_1:+60899779 | Msa0215580:CDS |
| GAAGATGATGAGAAGAAGAA+AGG | 0.566806 | 2_1:+60899621 | Msa0215580:CDS |
| GAAGCAAACATCAGTTGAGA+AGG | 0.569996 | 2_1:+60899539 | Msa0215580:CDS |
| AGAAAAGAGCCAAGTAGAGG+TGG | 0.571945 | 2_1:+60899660 | Msa0215580:CDS |
| TGGTTGCAGGGATAAGGCAG+AGG | 0.586383 | 2_1:+60899799 | Msa0215580:CDS |
| GGAACTTGCACTGAAGGAAG+CGG | 0.610870 | 2_1:+60902329 | Msa0215580:CDS |
| CATCTGTTGTGGTGGTTGCA+GGG | 0.612833 | 2_1:+60899787 | Msa0215580:CDS |
| CATAGTACACAATGGAAGCA+AGG | 0.613876 | 2_1:+60899502 | None:intergenic |
| TCATTCCAAAGCATCTGTTG+TGG | 0.621345 | 2_1:+60899776 | Msa0215580:CDS |
| GGGAGAAAAGAGCCAAGTAG+AGG | 0.628005 | 2_1:+60899657 | Msa0215580:CDS |
| ACTGGCCAGCAAAATCATGA+TGG | 0.639807 | 2_1:+60902353 | Msa0215580:CDS |
| TCGTCGCCATAAGGTTTGTG+AGG | 0.640730 | 2_1:+60899752 | Msa0215580:CDS |
| GCTTAGCGCGACACAATGAA+CGG | 0.657384 | 2_1:+60902288 | Msa0215580:CDS |
| AAGCAAGGAATACAATAGAG+GGG | 0.716459 | 2_1:+60899517 | Msa0215580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATATATATATATTTTA+TGG | - | chr2_1:60900349-60900368 | None:intergenic | 0.0% |
| !! | TTCAATATAATTATATTTGT+CGG | - | chr2_1:60899954-60899973 | None:intergenic | 10.0% |
| !!! | AATTTAAGTTTTAAAACAAT+GGG | - | chr2_1:60900152-60900171 | None:intergenic | 10.0% |
| !!! | AAATTTAAGTTTTAAAACAA+TGG | - | chr2_1:60900153-60900172 | None:intergenic | 10.0% |
| !! | TATTATAATCAAATAGTTTA+TGG | - | chr2_1:60900435-60900454 | None:intergenic | 10.0% |
| !! | ATAAACTATTTGATTATAAT+AGG | + | chr2_1:60900434-60900453 | Msa0215580:intron | 10.0% |
| !!! | ACTTATTATTTTTATAGTTT+AGG | + | chr2_1:60900556-60900575 | Msa0215580:intron | 10.0% |
| !!! | CTTATTATTTTTATAGTTTA+GGG | + | chr2_1:60900557-60900576 | Msa0215580:intron | 10.0% |
| !!! | TTTCAAATATTTTTTTTACA+GGG | - | chr2_1:60901292-60901311 | None:intergenic | 10.0% |
| !!! | ATTTCAAATATTTTTTTTAC+AGG | - | chr2_1:60901293-60901312 | None:intergenic | 10.0% |
| !!! | TTTCAAATATTTTTTTTACA+GGG | - | chr2_1:60901292-60901311 | None:intergenic | 10.0% |
| !!! | ATTTCAAATATTTTTTTTAC+AGG | - | chr2_1:60901293-60901312 | None:intergenic | 10.0% |
| !!! | TTAAAACAATTTTTTTTACA+GGG | - | chr2_1:60901348-60901367 | None:intergenic | 10.0% |
| !!! | TTTAAAACAATTTTTTTTAC+AGG | - | chr2_1:60901349-60901368 | None:intergenic | 10.0% |
| !!! | ATTAGTTTTTTTTTAAAATC+TGG | + | chr2_1:60901629-60901648 | Msa0215580:intron | 10.0% |
| !!! | AAAAAAAATTTGTTTGAAAA+AGG | - | chr2_1:60901965-60901984 | None:intergenic | 10.0% |
| !!! | TTTCAAATTTTTATTTTTAC+AGG | + | chr2_1:60901996-60902015 | Msa0215580:intron | 10.0% |
| !!! | TTCAAATTTTTATTTTTACA+GGG | + | chr2_1:60901997-60902016 | Msa0215580:intron | 10.0% |
| !!! | AAAAATCTGTTTTATTAGTT+GGG | + | chr2_1:60900846-60900865 | Msa0215580:intron | 15.0% |
| !!! | AAAAAACGTTTTTTATTATG+TGG | - | chr2_1:60901469-60901488 | None:intergenic | 15.0% |
| !! | ATATGATCGAAAAAATTATT+TGG | - | chr2_1:60901567-60901586 | None:intergenic | 15.0% |
| !!! | AGATTTTTTTTTTAATTACG+TGG | + | chr2_1:60901876-60901895 | Msa0215580:intron | 15.0% |
| !!! | TTCAAACAAATTTTTTTTAC+AGG | + | chr2_1:60901967-60901986 | Msa0215580:intron | 15.0% |
| !!! | TCAAACAAATTTTTTTTACA+GGG | + | chr2_1:60901968-60901987 | Msa0215580:intron | 15.0% |
| !!! | ACTCTTTCTTTTATTTGAAT+AGG | + | chr2_1:60900062-60900081 | Msa0215580:intron | 20.0% |
| !! | ATGCTACTAATTTATATAGA+TGG | - | chr2_1:60900222-60900241 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAAACACAAGCA+AGG | - | chr2_1:60900270-60900289 | None:intergenic | 20.0% |
| !! | GTCTTTAACATTTAATAGTA+TGG | + | chr2_1:60900499-60900518 | Msa0215580:intron | 20.0% |
| !!! | TGAATATGCTCTTTTTATAT+TGG | + | chr2_1:60900636-60900655 | Msa0215580:intron | 20.0% |
| !!! | GAATATGCTCTTTTTATATT+GGG | + | chr2_1:60900637-60900656 | Msa0215580:intron | 20.0% |
| !!! | CAAAAATCTGTTTTATTAGT+TGG | + | chr2_1:60900845-60900864 | Msa0215580:intron | 20.0% |
| !!! | AAAATCTGTTTTATTAGTTG+GGG | + | chr2_1:60900847-60900866 | Msa0215580:intron | 20.0% |
| !!! | ACCATTATAAGTATATTTTC+GGG | - | chr2_1:60900964-60900983 | None:intergenic | 20.0% |
| !!! | CACCATTATAAGTATATTTT+CGG | - | chr2_1:60900965-60900984 | None:intergenic | 20.0% |
| !!! | AAGTTTTCGAAGTTTTTTTT+CGG | + | chr2_1:60901820-60901839 | Msa0215580:intron | 20.0% |
| ! | AAAATCAAGTTTACCATCTA+TGG | - | chr2_1:60900120-60900139 | None:intergenic | 25.0% |
| !! | TTTTAATACCATGAAGATGA+AGG | - | chr2_1:60900740-60900759 | None:intergenic | 25.0% |
| ! | TCCCGAAAATATACTTATAA+TGG | + | chr2_1:60900960-60900979 | Msa0215580:intron | 25.0% |
| ! | CGAAAATATACTTATAATGG+TGG | + | chr2_1:60900963-60900982 | Msa0215580:intron | 25.0% |
| !!! | ATCTCTAAAACTTAGAGTTT+TGG | - | chr2_1:60901030-60901049 | None:intergenic | 25.0% |
| ! | AGATATTCTAAATTGAGTCA+AGG | + | chr2_1:60901070-60901089 | Msa0215580:intron | 25.0% |
| ! | GATATTCTAAATTGAGTCAA+GGG | + | chr2_1:60901071-60901090 | Msa0215580:intron | 25.0% |
| ! | AAAACTAACCCAAATTACAA+AGG | + | chr2_1:60902029-60902048 | Msa0215580:intron | 25.0% |
| !! | ATTTTCGTCCTTTGTAATTT+GGG | - | chr2_1:60902040-60902059 | None:intergenic | 25.0% |
| !!! | CGTCTTTAGTTTTACTTTAA+AGG | - | chr2_1:60902073-60902092 | None:intergenic | 25.0% |
| !!! | TTGACCTTTTTCACTATATT+AGG | + | chr2_1:60902151-60902170 | Msa0215580:intron | 25.0% |
| !!! | ATGGAACATTTCTTTGTTTT+GGG | - | chr2_1:60902179-60902198 | None:intergenic | 25.0% |
| AGAAATAGAAGTTGAAGAAG+AGG | + | chr2_1:60899584-60899603 | Msa0215580:CDS | 30.0% | |
| CAACTTTCTACTTGACAAAA+AGG | - | chr2_1:60899699-60899718 | None:intergenic | 30.0% | |
| ! | TTTTGTCAAGTAGAAAGTTG+TGG | + | chr2_1:60899699-60899718 | Msa0215580:CDS | 30.0% |
| TTCATAAGTTTAGATGACAG+TGG | - | chr2_1:60899863-60899882 | None:intergenic | 30.0% | |
| TCATCTAAACTTATGAAGCA+CGG | + | chr2_1:60899866-60899885 | Msa0215580:intron | 30.0% | |
| AGTTTAGATTCTACGAAATG+CGG | - | chr2_1:60900045-60900064 | None:intergenic | 30.0% | |
| AAAATTCTTGGATCCATTAG+TGG | - | chr2_1:60900187-60900206 | None:intergenic | 30.0% | |
| ! | TGGATCCAAGAATTTTGAAT+AGG | + | chr2_1:60900191-60900210 | Msa0215580:intron | 30.0% |
| ! | GGATCCAAGAATTTTGAATA+GGG | + | chr2_1:60900192-60900211 | Msa0215580:intron | 30.0% |
| ! | GATCCAAGAATTTTGAATAG+GGG | + | chr2_1:60900193-60900212 | Msa0215580:intron | 30.0% |
| ! | ATCCAAGAATTTTGAATAGG+GGG | + | chr2_1:60900194-60900213 | Msa0215580:intron | 30.0% |
| TTTGGAAAACCTTTCTTTGT+TGG | - | chr2_1:60900701-60900720 | None:intergenic | 30.0% | |
| !! | CTAAAACTTAGAGTTTTGGT+TGG | - | chr2_1:60901026-60901045 | None:intergenic | 30.0% |
| AAAAATTCTCTCTCATCCAT+AGG | + | chr2_1:60901181-60901200 | Msa0215580:intron | 30.0% | |
| ATTTGTTTGAAAAAGGTCCT+TGG | - | chr2_1:60901958-60901977 | None:intergenic | 30.0% | |
| ! | GATTTTCGTCCTTTGTAATT+TGG | - | chr2_1:60902041-60902060 | None:intergenic | 30.0% |
| !!! | TGGAACATTTCTTTGTTTTG+GGG | - | chr2_1:60902178-60902197 | None:intergenic | 30.0% |
| !! | CATGGAACATTTCTTTGTTT+TGG | - | chr2_1:60902180-60902199 | None:intergenic | 30.0% |
| TTTCAAATAAGGTGAATGCA+TGG | - | chr2_1:60902198-60902217 | None:intergenic | 30.0% | |
| CTCATCAAAGGTTTCAAATA+AGG | - | chr2_1:60902209-60902228 | None:intergenic | 30.0% | |
| ATGAACATAACAAGTAGTTC+TGG | + | chr2_1:60902395-60902414 | Msa0215580:CDS | 30.0% | |
| GAAGCAAGGAATACAATAGA+GGG | + | chr2_1:60899516-60899535 | Msa0215580:CDS | 35.0% | |
| AAGCAAGGAATACAATAGAG+GGG | + | chr2_1:60899517-60899536 | Msa0215580:CDS | 35.0% | |
| AAACATCAGTTGAGAAGGTT+TGG | + | chr2_1:60899544-60899563 | Msa0215580:CDS | 35.0% | |
| AATAGAAGTTGAAGAAGAGG+AGG | + | chr2_1:60899587-60899606 | Msa0215580:CDS | 35.0% | |
| GAAGATGATGAGAAGAAGAA+AGG | + | chr2_1:60899621-60899640 | Msa0215580:CDS | 35.0% | |
| CTTTCTACTTGACAAAAAGG+TGG | - | chr2_1:60899696-60899715 | None:intergenic | 35.0% | |
| AATGAACCTCACAAACCTTA+TGG | - | chr2_1:60899761-60899780 | None:intergenic | 35.0% | |
| ATAAGTTTAGATGACAGTGG+AGG | - | chr2_1:60899860-60899879 | None:intergenic | 35.0% | |
| CATCTATGGTATTCTACTAG+TGG | - | chr2_1:60900106-60900125 | None:intergenic | 35.0% | |
| CACTAGTAGAATACCATAGA+TGG | + | chr2_1:60900104-60900123 | Msa0215580:intron | 35.0% | |
| TTGAATCTTGTTGCCACTAA+TGG | + | chr2_1:60900171-60900190 | Msa0215580:intron | 35.0% | |
| TTAGTTGAGCCAACAAAGAA+AGG | + | chr2_1:60900689-60900708 | Msa0215580:intron | 35.0% | |
| !! | AACTTGACTCGACTTTTCAT+TGG | - | chr2_1:60900811-60900830 | None:intergenic | 35.0% |
| !!! | AGTCGAGTCAAGTTAGTTTT+AGG | + | chr2_1:60900817-60900836 | Msa0215580:intron | 35.0% |
| AGACATATCATCTCAACTCT+TGG | - | chr2_1:60900939-60900958 | None:intergenic | 35.0% | |
| CGTTACAAAATCAACTTGCA+AGG | - | chr2_1:60900998-60901017 | None:intergenic | 35.0% | |
| TGCTGAATAATCCTTACCTA+TGG | - | chr2_1:60901200-60901219 | None:intergenic | 35.0% | |
| TGATAATCGTCCCTGTAATT+TGG | + | chr2_1:60901248-60901267 | Msa0215580:intron | 35.0% | |
| CAAAACTGGACCAAATTACA+GGG | - | chr2_1:60901261-60901280 | None:intergenic | 35.0% | |
| TCAAAACTGGACCAAATTAC+AGG | - | chr2_1:60901262-60901281 | None:intergenic | 35.0% | |
| AATCATCACAAAAGTGGCTA+GGG | - | chr2_1:60901377-60901396 | None:intergenic | 35.0% | |
| AAATCATCACAAAAGTGGCT+AGG | - | chr2_1:60901378-60901397 | None:intergenic | 35.0% | |
| !!! | TAGCCACTTTTGTGATGATT+TGG | + | chr2_1:60901377-60901396 | Msa0215580:intron | 35.0% |
| ATGCCAAATCATCACAAAAG+TGG | - | chr2_1:60901383-60901402 | None:intergenic | 35.0% | |
| !!! | GGAACATTTCTTTGTTTTGG+GGG | - | chr2_1:60902177-60902196 | None:intergenic | 35.0% |
| ! | AATCACCATCATGATTTTGC+TGG | - | chr2_1:60902361-60902380 | None:intergenic | 35.0% |
| ! | AGCAAAATCATGATGGTGAT+TGG | + | chr2_1:60902360-60902379 | Msa0215580:CDS | 35.0% |
| GGAAGCAAGGAATACAATAG+AGG | + | chr2_1:60899515-60899534 | Msa0215580:CDS | 40.0% | |
| GAAGCAAACATCAGTTGAGA+AGG | + | chr2_1:60899539-60899558 | Msa0215580:CDS | 40.0% | |
| !! | AAGAAAGGTGTTTGTGTGAG+TGG | + | chr2_1:60899636-60899655 | Msa0215580:CDS | 40.0% |
| !! | AGAAAGGTGTTTGTGTGAGT+GGG | + | chr2_1:60899637-60899656 | Msa0215580:CDS | 40.0% |
| GAAAATCTTCCACCTCTACT+TGG | - | chr2_1:60899672-60899691 | None:intergenic | 40.0% | |
| ! | TCATTCCAAAGCATCTGTTG+TGG | + | chr2_1:60899776-60899795 | Msa0215580:CDS | 40.0% |
| GATTCTACGAAATGCGGATA+CGG | - | chr2_1:60900039-60900058 | None:intergenic | 40.0% | |
| !! | CTACTAGTGGAAAGTGCTTA+GGG | - | chr2_1:60900093-60900112 | None:intergenic | 40.0% |
| !! | TCTACTAGTGGAAAGTGCTT+AGG | - | chr2_1:60900094-60900113 | None:intergenic | 40.0% |
| TGCCCCCTATTCAAAATTCT+TGG | - | chr2_1:60900199-60900218 | None:intergenic | 40.0% | |
| ! | TCGACTTTTCATTGGTGTGA+AGG | - | chr2_1:60900803-60900822 | None:intergenic | 40.0% |
| GAAGTCACTCATGTCACTAT+GGG | + | chr2_1:60900869-60900888 | Msa0215580:intron | 40.0% | |
| TTCTCTCTCATCCATAGGTA+AGG | + | chr2_1:60901186-60901205 | Msa0215580:intron | 40.0% | |
| ACAGGGACGAAAATCAAAAC+TGG | - | chr2_1:60902014-60902033 | None:intergenic | 40.0% | |
| !! | ACTTCTGATCTGATTTGGCA+TGG | - | chr2_1:60901931-60901950 | None:intergenic | 40.0% |
| ATGCCAAATCAGATCAGAAG+TGG | + | chr2_1:60901930-60901949 | Msa0215580:intron | 40.0% | |
| TGCCAAATCAGATCAGAAGT+GGG | + | chr2_1:60901931-60901950 | Msa0215580:intron | 40.0% | |
| GGGGCCTAATATAGTGAAAA+AGG | - | chr2_1:60902158-60902177 | None:intergenic | 40.0% | |
| GAAGTTGAAGAAGAGGAGGA+AGG | + | chr2_1:60899591-60899610 | Msa0215580:CDS | 45.0% | |
| AGAAAAGAGCCAAGTAGAGG+TGG | + | chr2_1:60899660-60899679 | Msa0215580:CDS | 45.0% | |
| GAGATATCATCGTCGCCATA+AGG | + | chr2_1:60899743-60899762 | Msa0215580:CDS | 45.0% | |
| ! | TTCCAAAGCATCTGTTGTGG+TGG | + | chr2_1:60899779-60899798 | Msa0215580:CDS | 45.0% |
| AACCACCACAACAGATGCTT+TGG | - | chr2_1:60899784-60899803 | None:intergenic | 45.0% | |
| ! | GGTTTTGCCAACAATGTAGC+AGG | + | chr2_1:60899820-60899839 | Msa0215580:CDS | 45.0% |
| GATCACACCTGCTACATTGT+TGG | - | chr2_1:60899830-60899849 | None:intergenic | 45.0% | |
| GCACGGACACTTATCGAATT+AGG | + | chr2_1:60899883-60899902 | Msa0215580:intron | 45.0% | |
| AACGACACATGTCTGACATC+AGG | - | chr2_1:60899914-60899933 | None:intergenic | 45.0% | |
| ! | TTTCCAAAGAGTGTGAGAGC+AGG | + | chr2_1:60900713-60900732 | Msa0215580:intron | 45.0% |
| GGAAGTCACTCATGTCACTA+TGG | + | chr2_1:60900868-60900887 | Msa0215580:intron | 45.0% | |
| ! | AGTTGCTGACTGTGCAACTT+TGG | + | chr2_1:60901420-60901439 | Msa0215580:intron | 45.0% |
| GCCAAATCAGATCAGAAGTG+GGG | + | chr2_1:60901932-60901951 | Msa0215580:intron | 45.0% | |
| ACTGGCCAGCAAAATCATGA+TGG | + | chr2_1:60902353-60902372 | Msa0215580:CDS | 45.0% | |
| !!! | TAAAAAAAATTGTTTTAAAA+TGG | + | chr2_1:60901350-60901369 | Msa0215580:intron | 5.0% |
| GTTGAAGAAGAGGAGGAAGG+TGG | + | chr2_1:60899594-60899613 | Msa0215580:CDS | 50.0% | |
| GGGAGAAAAGAGCCAAGTAG+AGG | + | chr2_1:60899657-60899676 | Msa0215580:CDS | 50.0% | |
| TCGTCGCCATAAGGTTTGTG+AGG | + | chr2_1:60899752-60899771 | Msa0215580:CDS | 50.0% | |
| CATCTGTTGTGGTGGTTGCA+GGG | + | chr2_1:60899787-60899806 | Msa0215580:CDS | 50.0% | |
| TTGTGGTGGTTGCAGGGATA+AGG | + | chr2_1:60899793-60899812 | Msa0215580:CDS | 50.0% | |
| ATCAGTGTCTGTGTCGTGTC+CGG | + | chr2_1:60900010-60900029 | Msa0215580:intron | 50.0% | |
| GAGCAGGTCCTTCATCTTCA+TGG | + | chr2_1:60900729-60900748 | Msa0215580:intron | 50.0% | |
| TTGGCATGTTTCTTGCCACG+TGG | + | chr2_1:60901396-60901415 | Msa0215580:intron | 50.0% | |
| ACTGTGCAACTTTGGCCATG+TGG | + | chr2_1:60901428-60901447 | Msa0215580:intron | 50.0% | |
| GCCCCACTTCTGATCTGATT+TGG | - | chr2_1:60901936-60901955 | None:intergenic | 50.0% | |
| AACCTTTGATGAGTGTGCGC+AGG | + | chr2_1:60902216-60902235 | Msa0215580:intron | 50.0% | |
| AACCTGCGCACACTCATCAA+AGG | - | chr2_1:60902221-60902240 | None:intergenic | 50.0% | |
| GCTTAGCGCGACACAATGAA+CGG | + | chr2_1:60902288-60902307 | Msa0215580:CDS | 50.0% | |
| ACTGCTGGAACTTGCACTGA+AGG | + | chr2_1:60902323-60902342 | Msa0215580:CDS | 50.0% | |
| GGAACTTGCACTGAAGGAAG+CGG | + | chr2_1:60902329-60902348 | Msa0215580:CDS | 50.0% | |
| GCATCTGTTGTGGTGGTTGC+AGG | + | chr2_1:60899786-60899805 | Msa0215580:CDS | 55.0% | |
| TGGTTGCAGGGATAAGGCAG+AGG | + | chr2_1:60899799-60899818 | Msa0215580:CDS | 55.0% | |
| CGAAATGCGGATACGGACAC+CGG | - | chr2_1:60900032-60900051 | None:intergenic | 55.0% | |
| GGACCTGCTCTCACACTCTT+TGG | - | chr2_1:60900719-60900738 | None:intergenic | 55.0% | |
| TCAGATCAGAAGTGGGGCCA+AGG | + | chr2_1:60901938-60901957 | Msa0215580:intron | 55.0% | |
| TGCACTGAAGGAAGCGGTAC+TGG | + | chr2_1:60902335-60902354 | Msa0215580:CDS | 55.0% | |
| CACAGTCAGCAACTGCCACG+TGG | - | chr2_1:60901414-60901433 | None:intergenic | 60.0% | |
| TTGGCCATGTGGCGATGACG+TGG | + | chr2_1:60901439-60901458 | Msa0215580:intron | 60.0% | |
| CATGCCACGTCATCGCCACA+TGG | - | chr2_1:60901446-60901465 | None:intergenic | 60.0% | |
| ACTGCCATGTCAGCGTCACG+TGG | + | chr2_1:60901899-60901918 | Msa0215580:intron | 60.0% | |
| CTTGCCACGTGACGCTGACA+TGG | - | chr2_1:60901906-60901925 | None:intergenic | 60.0% | |
| !! | CGGCGTCGTAAAAGCACTGC+TGG | + | chr2_1:60902308-60902327 | Msa0215580:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 60899513 | 60902442 | 60899513 | ID=Msa0215580;Name=Msa0215580 |
| chr2_1 | mRNA | 60899513 | 60902442 | 60899513 | ID=Msa0215580-mRNA-1;Parent=Msa0215580;Name=Msa0215580-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|177 |
| chr2_1 | exon | 60899513 | 60899841 | 60899513 | ID=Msa0215580-mRNA-1:exon:16770;Parent=Msa0215580-mRNA-1 |
| chr2_1 | exon | 60902238 | 60902442 | 60902238 | ID=Msa0215580-mRNA-1:exon:16771;Parent=Msa0215580-mRNA-1 |
| chr2_1 | CDS | 60899513 | 60899841 | 60899513 | ID=Msa0215580-mRNA-1:cds;Parent=Msa0215580-mRNA-1 |
| chr2_1 | CDS | 60902238 | 60902442 | 60902238 | ID=Msa0215580-mRNA-1:cds;Parent=Msa0215580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
