AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0215720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0215720 MtrunA17_Chr6g0476171 65.468 278 36 4 168 424 3 241 7.13e-120 352
Msa0215720 MtrunA17_Chr1g0163101 60.209 191 35 4 1 170 1 171 4.56e-67 214
Msa0215720 MtrunA17_Chr1g0163101 74.725 91 20 1 426 516 77 164 9.58e-36 131
Msa0215720 MtrunA17_Chr1g0163141 65.359 153 39 2 32 170 18 170 9.87e-57 187
Msa0215720 MtrunA17_Chr1g0163141 47.015 134 50 3 404 516 30 163 1.79e-25 103
Msa0215720 MtrunA17_Chr1g0163131 38.629 321 130 9 5 278 6 306 2.17e-56 191
Msa0215720 MtrunA17_Chr1g0163131 72.826 92 23 1 425 516 77 166 3.38e-33 128
Msa0215720 MtrunA17_Chr1g0163131 45.455 77 40 1 352 428 232 306 9.01e-14 72.4
Msa0215720 MtrunA17_Chr6g0476181 62.252 151 40 2 32 170 9 154 2.45e-55 182
Msa0215720 MtrunA17_Chr6g0476181 57.798 109 23 2 425 516 45 147 3.03e-26 104
Msa0215720 MtrunA17_Chr1g0163181 31.429 455 235 16 15 423 1 424 2.15e-54 189
Msa0215720 MtrunA17_Chr1g0163261 37.736 318 122 11 17 290 9 294 1.99e-50 174
Msa0215720 MtrunA17_Chr1g0162161 56.954 151 36 2 32 170 11 144 2.07e-47 162
Msa0215720 MtrunA17_Chr1g0162161 71.739 92 25 1 425 516 47 137 1.11e-35 130
Msa0215720 MtrunA17_Chr1g0163201 31.544 447 166 19 32 423 26 387 3.84e-46 166
Msa0215720 MtrunA17_Chr1g0163161 53.741 147 37 4 37 170 1 129 3.18e-40 142
Msa0215720 MtrunA17_Chr1g0163161 63.717 113 38 1 404 513 8 120 2.68e-38 136
Msa0215720 MtrunA17_Chr1g0163081 52.980 151 37 3 32 170 13 141 3.33e-40 142
Msa0215720 MtrunA17_Chr1g0163081 75.000 84 16 2 425 508 49 127 1.42e-30 116
Msa0215720 MtrunA17_Chr1g0163231 35.714 308 118 11 17 280 9 280 1.16e-39 145
Msa0215720 MtrunA17_Chr1g0163251 35.275 309 125 13 26 290 14 291 7.70e-39 146
Msa0215720 MtrunA17_Chr1g0163121 47.682 151 39 3 32 170 18 140 2.88e-34 126
Msa0215720 MtrunA17_Chr1g0163121 65.217 92 20 2 425 516 54 133 5.87e-28 108
Msa0215720 MtrunA17_Chr1g0171611 33.446 296 129 9 17 280 9 268 1.21e-33 129
Msa0215720 MtrunA17_Chr1g0163111 33.333 246 109 10 199 423 12 223 5.78e-32 122
Msa0215720 MtrunA17_Chr1g0163151 31.707 246 103 7 199 423 15 216 9.86e-28 110
Msa0215720 MtrunA17_Chr1g0163091 45.926 135 45 5 177 290 3 130 3.89e-23 96.3
Msa0215720 MtrunA17_Chr1g0162151 30.576 278 92 10 177 427 3 206 1.06e-21 93.6
Msa0215720 MtrunA17_Chr8g0390841 23.361 488 283 21 15 423 37 512 3.11e-20 94.0
Msa0215720 MtrunA17_Chr1g0208771 23.478 460 260 17 36 426 24 460 5.05e-20 92.8
Msa0215720 MtrunA17_Chr4g0067431 25.836 329 179 15 12 290 10 323 1.37e-17 84.0
Msa0215720 MtrunA17_Chr1g0163071 25.828 302 155 12 33 284 10 292 1.35e-16 80.9
Msa0215720 MtrunA17_Chr1g0163241 35.772 123 58 5 32 140 30 145 2.36e-15 73.9
Msa0215720 MtrunA17_Chr3g0103181 23.934 305 172 12 7 278 2 279 2.18e-14 73.6
Msa0215720 MtrunA17_Chr7g0233561 24.847 326 169 15 10 281 11 314 2.43e-13 71.2
Msa0215720 MtrunA17_Chr1g0163191 37.037 108 42 4 26 107 14 121 5.18e-13 67.0
Msa0215720 MtrunA17_Chr1g0163221 24.595 309 179 13 11 283 5 295 7.96e-12 67.0
Msa0215720 MtrunA17_Chr3g0103151 30.000 140 82 5 15 138 10 149 8.67e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 86 sgRNAs with CRISPR-Local

Find 407 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGAATATGTGGGCAATTT+TGG 0.142869 2_1:+61108401 Msa0215720:CDS
AGAGAATGATTACTAGTTCT+TGG 0.263261 2_1:-61105787 None:intergenic
GGGCATGGTTCCTTTGTGGC+TGG 0.277429 2_1:-61108128 None:intergenic
TACGATATTTGTTAGAGTTT+TGG 0.280588 2_1:-61113642 None:intergenic
CAGACCCATTTGGAAGTCTA+AGG 0.299120 2_1:-61106706 None:intergenic
TTGAATTTGTCATGTAAATT+CGG 0.311912 2_1:-61108570 None:intergenic
CACATATTCCATATCTTCTT+CGG 0.325520 2_1:-61108390 None:intergenic
TTAATACCTTGAAACTGCTT+TGG 0.331338 2_1:-61108149 None:intergenic
AAAAGACATAATATATTTAG+TGG 0.334344 2_1:+61108728 Msa0215720:CDS
TTCCTTTGTGGCTGGGATAA+TGG 0.345212 2_1:-61108120 None:intergenic
GGTCTGAGTTCAAAATGAAT+TGG 0.350012 2_1:+61106723 Msa0215720:CDS
TATAATGAACATCTCGACTA+TGG 0.355043 2_1:+61108803 Msa0215720:CDS
CTTTGGGCATGGTTCCTTTG+TGG 0.363966 2_1:-61108132 None:intergenic
TAATACCTTGAAACTGCTTT+GGG 0.373065 2_1:-61108148 None:intergenic
AATCTGACCCTCCTTTGTAT+TGG 0.385935 2_1:-61106826 None:intergenic
GACAATGCCCGAAGAAGATA+TGG 0.389565 2_1:+61108382 Msa0215720:CDS
TAATATATTTAGTGGAAATT+CGG 0.396970 2_1:+61108736 Msa0215720:CDS
GGCATGGTTCCTTTGTGGCT+GGG 0.407207 2_1:-61108127 None:intergenic
ATGATGTTTGGCTTCAGAAT+TGG 0.437267 2_1:+61106759 Msa0215720:CDS
GCCTTAAAACACAAGGTCTC+AGG 0.437600 2_1:+61108444 Msa0215720:CDS
AAGGAACATGACTTAAAAGT+TGG 0.442738 2_1:+61108044 Msa0215720:CDS
CTAGTTCTTGGTCTTGAAGC+TGG 0.445722 2_1:-61105775 None:intergenic
GTCTGAGTTCAAAATGAATT+GGG 0.455385 2_1:+61106724 Msa0215720:CDS
GAATTTACATGACAAATTCA+AGG 0.456040 2_1:+61108572 Msa0215720:CDS
GTAATATCATTCAAAATCTC+AGG 0.459755 2_1:-61113697 None:intergenic
TTGAAGCTGGCGAAGTTGAA+TGG 0.463192 2_1:-61105762 None:intergenic
TACAACGAGGTGATGATGTT+TGG 0.463515 2_1:+61106747 Msa0215720:CDS
ATTCGGTGGAGTTGAAAGTA+GGG 0.471281 2_1:+61108753 Msa0215720:CDS
ACATATTCCATATCTTCTTC+GGG 0.475083 2_1:-61108389 None:intergenic
CGAAGAAGATATGGAATATG+TGG 0.478018 2_1:+61108391 Msa0215720:CDS
TTAGAAGTGTTGATGAGGAC+AGG 0.485676 2_1:+61107946 Msa0215720:CDS
TTTGGAAGTCTAAGGGATGT+TGG 0.490503 2_1:-61106698 None:intergenic
AGTGAAACTAGGATTCTCAT+TGG 0.490637 2_1:-61107439 None:intergenic
TCAATGTCAAGTGTTCACTA+TGG 0.491973 2_1:+61105701 None:intergenic
TGAAAGTAGGGGAAGGAACA+TGG 0.498346 2_1:+61108765 Msa0215720:CDS
CCTTGAAACTGCTTTGGGCA+TGG 0.499094 2_1:-61108143 None:intergenic
AATTCGGTGGAGTTGAAAGT+AGG 0.502201 2_1:+61108752 Msa0215720:CDS
TTGTCAATGTTTGTCCCTTG+AGG 0.507957 2_1:-61107058 None:intergenic
AAGGAAATTCGTAGAGACAT+TGG 0.511665 2_1:+61106660 Msa0215720:intron
AGAGATTGCAAAGTAAAGAC+TGG 0.513081 2_1:+61108857 Msa0215720:CDS
TGAATTAGAAAAGGTTTGCA+TGG 0.513244 2_1:+61113500 Msa0215720:intron
ACATCCCTTAGACTTCCAAA+TGG 0.515725 2_1:+61106701 Msa0215720:CDS
ATGGCCTTCAACATGAGATC+GGG 0.518094 2_1:-61107472 None:intergenic
GCTGGCGAAGTTGAATGGTT+TGG 0.518589 2_1:-61105757 None:intergenic
TGGACGTGGGAGTGAAGCTA+AGG 0.519368 2_1:+61105721 Msa0215720:CDS
TGTGCAAAATCATGTGTTCA+AGG 0.521657 2_1:+61108907 Msa0215720:CDS
ACTGTTGCTGCTACACCTCA+AGG 0.523151 2_1:+61107043 Msa0215720:CDS
ATGGTAATTGTGAATGAAAG+TGG 0.526717 2_1:-61108101 None:intergenic
CCATGCCCAAAGCAGTTTCA+AGG 0.526984 2_1:+61108143 Msa0215720:CDS
GTGAAACTAGGATTCTCATT+GGG 0.534567 2_1:-61107438 None:intergenic
GACTATGGATGGTTCACTAA+AGG 0.536976 2_1:+61108818 Msa0215720:CDS
TATGGCCTTCAACATGAGAT+CGG 0.541774 2_1:-61107473 None:intergenic
TACATGAATGAGTTATTGCA+AGG 0.543984 2_1:+61107912 Msa0215720:CDS
TATATTTAGTGGAAATTCGG+TGG 0.544355 2_1:+61108739 Msa0215720:CDS
CAATGATGAACAAGAAGCTA+AGG 0.548779 2_1:+61106907 Msa0215720:CDS
CATCCCTTAGACTTCCAAAT+GGG 0.555762 2_1:+61106702 Msa0215720:CDS
TATTCGTTTGAAAACCATGT+AGG 0.557476 2_1:-61107891 None:intergenic
ATGGATGGTTCACTAAAGGC+TGG 0.558556 2_1:+61108822 Msa0215720:CDS
TTTGGCTTCAGAATTGGAAG+AGG 0.559399 2_1:+61106765 Msa0215720:CDS
GATAATTTGAGAGTGAAACT+AGG 0.566910 2_1:-61107450 None:intergenic
ATGAACATCTCGACTATGGA+TGG 0.566956 2_1:+61108807 Msa0215720:CDS
TCAAGTGTTCACTATGGACG+TGG 0.567496 2_1:+61105707 Msa0215720:CDS
TGAAACAGAGGCTACCTACA+TGG 0.580260 2_1:+61107877 Msa0215720:intron
AACAATTAGAAGTGTTGATG+AGG 0.583313 2_1:+61107941 Msa0215720:CDS
TTTGCGCGCTCTCTCAGATG+TGG 0.586381 2_1:+61106788 Msa0215720:CDS
AGACCCATTTGGAAGTCTAA+GGG 0.608527 2_1:-61106705 None:intergenic
AATAGAGACAGAGGAGGCCG+CGG 0.610798 2_1:+61107351 Msa0215720:intron
GCAGAGGCTAATAGAGACAG+AGG 0.621169 2_1:+61107342 Msa0215720:intron
TGTGTTGAGGTTCTGAATGA+CGG 0.625237 2_1:+61106965 Msa0215720:CDS
CAATGATTATGATTGTGTTG+AGG 0.625578 2_1:+61106952 Msa0215720:CDS
GGAAGGAACATGGTTTGTAG+AGG 0.629163 2_1:+61108775 Msa0215720:CDS
GAAGAAGATATGGAATATGT+GGG 0.632888 2_1:+61108392 Msa0215720:CDS
TTCGGTGGAGTTGAAAGTAG+GGG 0.634551 2_1:+61108754 Msa0215720:CDS
GGACGTGGGAGTGAAGCTAA+GGG 0.640577 2_1:+61105722 Msa0215720:CDS
CTGTTGCTGCTACACCTCAA+GGG 0.643334 2_1:+61107044 Msa0215720:CDS
GAATGAGTTATTGCAAGGGA+AGG 0.643476 2_1:+61107917 Msa0215720:CDS
GTGGAGTTGAAAGTAGGGGA+AGG 0.644645 2_1:+61108758 Msa0215720:CDS
TAGAAGTGTTGATGAGGACA+GGG 0.646868 2_1:+61107947 Msa0215720:CDS
ATTTCTTAGCTTTCTTACCG+CGG 0.652512 2_1:-61107368 None:intergenic
TACCATTATCCCAGCCACAA+AGG 0.660933 2_1:+61108118 Msa0215720:CDS
ACATGAATGAGTTATTGCAA+GGG 0.661417 2_1:+61107913 Msa0215720:CDS
AACAGCTGCCTTAAAACACA+AGG 0.666453 2_1:+61108437 Msa0215720:CDS
GTGTTGATGAGGACAGGGCA+CGG 0.684939 2_1:+61107952 Msa0215720:CDS
CAAGTGTTCACTATGGACGT+GGG 0.700697 2_1:+61105708 Msa0215720:CDS
GAGGCTAATAGAGACAGAGG+AGG 0.708768 2_1:+61107345 Msa0215720:intron
AAAATGAATTGGGTACAACG+AGG 0.756191 2_1:+61106734 Msa0215720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAATAAAAATAAA+AGG + chr2_1:61109451-61109470 Msa0215720:intron 0.0%
!! AAAAATAAATAAAAATAAAA+GGG + chr2_1:61109452-61109471 Msa0215720:intron 0.0%
!! TAATAATAATAATAATAATA+AGG - chr2_1:61112852-61112871 None:intergenic 0.0%
!!! TTGTTGTTATTATTATTATT+TGG + chr2_1:61112253-61112272 Msa0215720:intron 10.0%
!!! GGTTTTTTTATTTAAATTTA+TGG + chr2_1:61112493-61112512 Msa0215720:intron 10.0%
!!! AAATATTATTTTAGATACAA+TGG + chr2_1:61113458-61113477 Msa0215720:intron 10.0%
!! ATACAGAAAGATATAAATTA+TGG + chr2_1:61106030-61106049 Msa0215720:intron 15.0%
!!! TATGGTTTTATTATCATTAA+TGG + chr2_1:61106048-61106067 Msa0215720:intron 15.0%
!! TTATTATCATTAATGGAATT+TGG + chr2_1:61106055-61106074 Msa0215720:intron 15.0%
!! AATTCATGAAATTAAATTCA+TGG + chr2_1:61106312-61106331 Msa0215720:intron 15.0%
!! AGAAAAAACATAAATAAAGT+GGG - chr2_1:61107215-61107234 None:intergenic 15.0%
!! AAGAAAAAACATAAATAAAG+TGG - chr2_1:61107216-61107235 None:intergenic 15.0%
!! CTTGAAAAATAAAATTAAGA+TGG - chr2_1:61108475-61108494 None:intergenic 15.0%
!! AAAAGACATAATATATTTAG+TGG + chr2_1:61108728-61108747 Msa0215720:CDS 15.0%
!! TAATATATTTAGTGGAAATT+CGG + chr2_1:61108736-61108755 Msa0215720:CDS 15.0%
!! TTAACATATTTATGAATATC+AGG + chr2_1:61109611-61109630 Msa0215720:intron 15.0%
!!! TTTTTTTTATTGTTGTTGTT+GGG - chr2_1:61109758-61109777 None:intergenic 15.0%
!!! TTTTTTTTTATTGTTGTTGT+TGG - chr2_1:61109759-61109778 None:intergenic 15.0%
!!! ATATTCCATTTTTACATAAT+GGG - chr2_1:61110247-61110266 None:intergenic 15.0%
!!! TCAAATTTTGTTGATATATA+AGG - chr2_1:61110670-61110689 None:intergenic 15.0%
!!! TTAAATTTTTAGAACTTCAT+TGG - chr2_1:61110711-61110730 None:intergenic 15.0%
!!! TTTTTAATATTAAAAGAGTG+AGG - chr2_1:61111176-61111195 None:intergenic 15.0%
!! TTCACAAAAATTTCTTAAAT+GGG - chr2_1:61111244-61111263 None:intergenic 15.0%
!! TTTCACAAAAATTTCTTAAA+TGG - chr2_1:61111245-61111264 None:intergenic 15.0%
!! AAAATCATACTACTTTAATT+TGG + chr2_1:61111457-61111476 Msa0215720:intron 15.0%
!!! AAATCATACTACTTTAATTT+GGG + chr2_1:61111458-61111477 Msa0215720:intron 15.0%
!! TGAAATGATAATAAATAAGT+AGG - chr2_1:61111626-61111645 None:intergenic 15.0%
!!! AATTGAGATAATAGTTATTT+TGG - chr2_1:61111783-61111802 None:intergenic 15.0%
!! ATAAGAAATTCTATTCAAAA+TGG - chr2_1:61112147-61112166 None:intergenic 15.0%
!! ATAAATAAGATAAAAAACCA+TGG - chr2_1:61112292-61112311 None:intergenic 15.0%
!! TTAATTAAAAAACATTGATG+AGG + chr2_1:61112410-61112429 Msa0215720:intron 15.0%
!!! TTATGACTAATTTTTTGATA+TGG + chr2_1:61113065-61113084 Msa0215720:intron 15.0%
!!! TATGACTAATTTTTTGATAT+GGG + chr2_1:61113066-61113085 Msa0215720:intron 15.0%
!! TCATTTAATAATGAAAAACA+AGG - chr2_1:61113193-61113212 None:intergenic 15.0%
!!! TTTGAAATTTTTAGAGATAT+TGG - chr2_1:61113424-61113443 None:intergenic 15.0%
!!! CTTTTAGTTTTTCAATATAA+AGG + chr2_1:61113541-61113560 Msa0215720:CDS 15.0%
!! ATCAAAAGAATGAATGAAAA+CGG - chr2_1:61105831-61105850 None:intergenic 20.0%
!!! TCCTTTTGAATTATCATAAA+TGG + chr2_1:61105995-61106014 Msa0215720:intron 20.0%
!! TCCATTTATGATAATTCAAA+AGG - chr2_1:61105999-61106018 None:intergenic 20.0%
!! TTGATTGTTAGAAACTAAAA+CGG + chr2_1:61106540-61106559 Msa0215720:intron 20.0%
!!! AGATTTTCATGTCATTATAT+TGG + chr2_1:61106844-61106863 Msa0215720:intron 20.0%
!! AAAAAGAAAATCAACTCAAA+TGG + chr2_1:61107013-61107032 Msa0215720:CDS 20.0%
!! TAAAAACATGTACATTTGTA+TGG - chr2_1:61107184-61107203 None:intergenic 20.0%
!! TATTAACAAGAGAAACATTT+GGG - chr2_1:61107613-61107632 None:intergenic 20.0%
!! AGTTTGATACATTTAAATAC+TGG + chr2_1:61107782-61107801 Msa0215720:intron 20.0%
!! TTGAATTTGTCATGTAAATT+CGG - chr2_1:61108573-61108592 None:intergenic 20.0%
!! TTTCTTTCATTTAAACCAAT+GGG - chr2_1:61109046-61109065 None:intergenic 20.0%
!! AAGTTGAAGAAAAAGAATAT+AGG + chr2_1:61109089-61109108 Msa0215720:intron 20.0%
!! AAAGAAAGAATCTTGAAAAA+AGG - chr2_1:61109399-61109418 None:intergenic 20.0%
!!! ACAATTCTAAGATGATAAAT+TGG - chr2_1:61110132-61110151 None:intergenic 20.0%
!!! CATATTCCATTTTTACATAA+TGG - chr2_1:61110248-61110267 None:intergenic 20.0%
!! CATTATGTAAAAATGGAATA+TGG + chr2_1:61110246-61110265 Msa0215720:intron 20.0%
!!! TAGTATTGTCATTTCAAATA+TGG - chr2_1:61110384-61110403 None:intergenic 20.0%
!!! AAGAAATTTTTGTGAAATGT+TGG + chr2_1:61111248-61111267 Msa0215720:intron 20.0%
!!! AGAAATTTTTGTGAAATGTT+GGG + chr2_1:61111249-61111268 Msa0215720:intron 20.0%
!! TCAAAATGGAAAAAATGAAT+AGG - chr2_1:61112133-61112152 None:intergenic 20.0%
!!! TCATTGTTATTTTTCCTAAT+AGG - chr2_1:61112177-61112196 None:intergenic 20.0%
!! AAGAAATATAAAAGACTCAA+AGG - chr2_1:61112325-61112344 None:intergenic 20.0%
!! GTTAATAAAAAATTGACGAA+AGG + chr2_1:61112670-61112689 Msa0215720:intron 20.0%
!! TAGATTTAAAAACTTACTGT+TGG + chr2_1:61113024-61113043 Msa0215720:intron 20.0%
!!! TTAGTGTCAAAATTTTTAAG+TGG - chr2_1:61113288-61113307 None:intergenic 20.0%
!! TTTGTAGAGAAATATTGAAA+AGG + chr2_1:61113388-61113407 Msa0215720:intron 20.0%
!!! CTAAAATAATATTTTGCACT+CGG - chr2_1:61113452-61113471 None:intergenic 20.0%
!!! TTTGTCTTTTGAATTAGAAA+AGG + chr2_1:61113491-61113510 Msa0215720:intron 20.0%
!!! TTAGTTTTTCAATATAAAGG+AGG + chr2_1:61113544-61113563 Msa0215720:CDS 20.0%
!!! TAGTTTTTCAATATAAAGGA+GGG + chr2_1:61113545-61113564 Msa0215720:CDS 20.0%
! GCTGTAAATAATGAATGAAA+AGG - chr2_1:61105928-61105947 None:intergenic 25.0%
! TCATGAAATTAAATTCATGG+AGG + chr2_1:61106315-61106334 Msa0215720:intron 25.0%
! TTTGTGAAATCTGAACTAAT+TGG - chr2_1:61106395-61106414 None:intergenic 25.0%
! CGTTACTAATTGAAATTCAT+TGG + chr2_1:61106608-61106627 Msa0215720:intron 25.0%
! TATATTGGATGATAGTAGTT+TGG + chr2_1:61106859-61106878 Msa0215720:intron 25.0%
!! TTGATTTTCTTTTTCTTGAG+GGG - chr2_1:61107007-61107026 None:intergenic 25.0%
!!! GTTGATTTTCTTTTTCTTGA+GGG - chr2_1:61107008-61107027 None:intergenic 25.0%
!!! AGTTGATTTTCTTTTTCTTG+AGG - chr2_1:61107009-61107028 None:intergenic 25.0%
!! CATTTGTATGGATTAAAAAG+TGG - chr2_1:61107172-61107191 None:intergenic 25.0%
!!! AAATGTACATGTTTTTAGTC+CGG + chr2_1:61107187-61107206 Msa0215720:intron 25.0%
! AAATGCACAAAAACTAAACA+TGG + chr2_1:61107387-61107406 Msa0215720:CDS 25.0%
! AATGCACAAAAACTAAACAT+GGG + chr2_1:61107388-61107407 Msa0215720:CDS 25.0%
!! ATCATGGGAAAAAAAAGTAT+AGG - chr2_1:61107512-61107531 None:intergenic 25.0%
!! AGAGACTTTCATTTTACTAT+AGG + chr2_1:61107557-61107576 Msa0215720:intron 25.0%
! ATTAACAAGAGAAACATTTG+GGG - chr2_1:61107612-61107631 None:intergenic 25.0%
! CTATTAACAAGAGAAACATT+TGG - chr2_1:61107614-61107633 None:intergenic 25.0%
! ACTAACAGAAAACATATTCA+AGG + chr2_1:61107651-61107670 Msa0215720:intron 25.0%
!! TTGATTTTCAAATGTGTCTT+TGG - chr2_1:61107724-61107743 None:intergenic 25.0%
! TTAACTATATGTAATGTGCA+TGG - chr2_1:61107818-61107837 None:intergenic 25.0%
! AGTAGTATGTTTACATTACA+TGG - chr2_1:61108296-61108315 None:intergenic 25.0%
! AGAACAAAGAAAACAGTTTA+AGG - chr2_1:61108527-61108546 None:intergenic 25.0%
! GAATTTACATGACAAATTCA+AGG + chr2_1:61108572-61108591 Msa0215720:CDS 25.0%
! TTTGTTCTTATATATGCAGT+TGG + chr2_1:61108682-61108701 Msa0215720:intron 25.0%
! TTATGTTAAACCCCTTAAAA+TGG - chr2_1:61108970-61108989 None:intergenic 25.0%
! CTTTCTTTCATTTAAACCAA+TGG - chr2_1:61109047-61109066 None:intergenic 25.0%
!!! CATTGGTTTAAATGAAAGAA+AGG + chr2_1:61109045-61109064 Msa0215720:intron 25.0%
! GTTTAAATGAAAGAAAGGTT+CGG + chr2_1:61109050-61109069 Msa0215720:intron 25.0%
! AAGAATATAGGAAAATCAGA+AGG + chr2_1:61109101-61109120 Msa0215720:intron 25.0%
! GTTGAAGAATCTTTGATTAA+AGG - chr2_1:61109185-61109204 None:intergenic 25.0%
! TTACTTTACTGTTAATGTTG+TGG - chr2_1:61109207-61109226 None:intergenic 25.0%
!!! ATTCTCAAACACTATTTTAG+AGG - chr2_1:61109249-61109268 None:intergenic 25.0%
! TAGTGTTAAAATAGCTACTA+TGG + chr2_1:61109347-61109366 Msa0215720:intron 25.0%
! TTAAAATAGCTACTATGGAA+TGG + chr2_1:61109352-61109371 Msa0215720:intron 25.0%
!!! AGTAGTTTTCAATTTTTCAG+AGG - chr2_1:61109522-61109541 None:intergenic 25.0%
! ATCAAGGTTTCTATGTTAAA+TGG - chr2_1:61109838-61109857 None:intergenic 25.0%
! TTTAACATAGAAACCTTGAT+TGG + chr2_1:61109838-61109857 Msa0215720:intron 25.0%
! ATGTGGTTATCATATTAACT+TGG + chr2_1:61110069-61110088 Msa0215720:intron 25.0%
!! CTAGTCTTCTATATTTATAG+AGG + chr2_1:61110210-61110229 Msa0215720:intron 25.0%
! TAGTCTATTTGAATTTGAAG+TGG + chr2_1:61110748-61110767 Msa0215720:intron 25.0%
! AAAACAGAAAAGAGAAAAGA+TGG - chr2_1:61110950-61110969 None:intergenic 25.0%
! TCTTCTTCAAGAATTTATCT+TGG + chr2_1:61110973-61110992 Msa0215720:intron 25.0%
!! AGTTATTGATAGTTGATTAG+TGG + chr2_1:61111216-61111235 Msa0215720:intron 25.0%
! TTCTTATAATGCAACCTATT+AGG + chr2_1:61112160-61112179 Msa0215720:intron 25.0%
!! ATGAGAAATGAAGATGTTTT+AGG + chr2_1:61112193-61112212 Msa0215720:intron 25.0%
!! AAGACAGAAAGTATAAACAA+TGG - chr2_1:61112223-61112242 None:intergenic 25.0%
!! TGATTTAAGACACTAAAACT+TGG + chr2_1:61112472-61112491 Msa0215720:intron 25.0%
!!! AATTTTCAAGAAACAGTGTT+GGG - chr2_1:61112940-61112959 None:intergenic 25.0%
!!! AATTTTTTGATATGGGAATC+AGG + chr2_1:61113073-61113092 Msa0215720:intron 25.0%
!!! ATTTTTTGATATGGGAATCA+GGG + chr2_1:61113074-61113093 Msa0215720:intron 25.0%
! GTATTGTTTAGACTAAAATG+TGG + chr2_1:61113127-61113146 Msa0215720:intron 25.0%
! AAAACAAATGAGTTCGAAAT+TGG - chr2_1:61113364-61113383 None:intergenic 25.0%
!!! TACGATATTTGTTAGAGTTT+TGG - chr2_1:61113645-61113664 None:intergenic 25.0%
! GTAATATCATTCAAAATCTC+AGG - chr2_1:61113700-61113719 None:intergenic 25.0%
!! TTGTCAATATTTGTCTTTTG+AGG - chr2_1:61113739-61113758 None:intergenic 25.0%
! AGAGAATGATTACTAGTTCT+TGG - chr2_1:61105790-61105809 None:intergenic 30.0%
AGAATGAATGAAAACGGAAA+AGG - chr2_1:61105825-61105844 None:intergenic 30.0%
CATATGCTTGACTTAAAATG+TGG + chr2_1:61106475-61106494 Msa0215720:intron 30.0%
GTCTGAGTTCAAAATGAATT+GGG + chr2_1:61106724-61106743 Msa0215720:CDS 30.0%
! CTTGTAGTTTTCCAATACAA+AGG + chr2_1:61106815-61106834 Msa0215720:CDS 30.0%
! TAGTTTTCCAATACAAAGGA+GGG + chr2_1:61106819-61106838 Msa0215720:CDS 30.0%
CAATGATTATGATTGTGTTG+AGG + chr2_1:61106952-61106971 Msa0215720:CDS 30.0%
!!! AATGTACATGTTTTTAGTCC+GGG + chr2_1:61107188-61107207 Msa0215720:intron 30.0%
!!! ATAGTTTTAACGTTTTGCAG+AGG + chr2_1:61107326-61107345 Msa0215720:intron 30.0%
GATAATTTGAGAGTGAAACT+AGG - chr2_1:61107453-61107472 None:intergenic 30.0%
ATAGGAAACATACCAATCTA+TGG - chr2_1:61107494-61107513 None:intergenic 30.0%
GGTACAAAAATCACTATCAT+GGG - chr2_1:61107527-61107546 None:intergenic 30.0%
AGGTACAAAAATCACTATCA+TGG - chr2_1:61107528-61107547 None:intergenic 30.0%
TTAACAAGAGAAACATTTGG+GGG - chr2_1:61107611-61107630 None:intergenic 30.0%
AGCTAACAATAGAGACATTT+AGG + chr2_1:61107747-61107766 Msa0215720:intron 30.0%
TATTCGTTTGAAAACCATGT+AGG - chr2_1:61107894-61107913 None:intergenic 30.0%
TACATGAATGAGTTATTGCA+AGG + chr2_1:61107912-61107931 Msa0215720:CDS 30.0%
ACATGAATGAGTTATTGCAA+GGG + chr2_1:61107913-61107932 Msa0215720:CDS 30.0%
!! AACAATTAGAAGTGTTGATG+AGG + chr2_1:61107941-61107960 Msa0215720:CDS 30.0%
!!! CAATGACAGTTTTTTAATGC+AGG + chr2_1:61108001-61108020 Msa0215720:intron 30.0%
AAGGAACATGACTTAAAAGT+TGG + chr2_1:61108044-61108063 Msa0215720:CDS 30.0%
ATGGTAATTGTGAATGAAAG+TGG - chr2_1:61108104-61108123 None:intergenic 30.0%
TAATACCTTGAAACTGCTTT+GGG - chr2_1:61108151-61108170 None:intergenic 30.0%
TTAATACCTTGAAACTGCTT+TGG - chr2_1:61108152-61108171 None:intergenic 30.0%
!! CTGATTTTATTTGCACTTGT+TGG - chr2_1:61108361-61108380 None:intergenic 30.0%
ACATATTCCATATCTTCTTC+GGG - chr2_1:61108392-61108411 None:intergenic 30.0%
CACATATTCCATATCTTCTT+CGG - chr2_1:61108393-61108412 None:intergenic 30.0%
GAAGAAGATATGGAATATGT+GGG + chr2_1:61108392-61108411 Msa0215720:CDS 30.0%
! TTTTGTGACATCATTAGACA+AGG + chr2_1:61108596-61108615 Msa0215720:CDS 30.0%
TATATTTAGTGGAAATTCGG+TGG + chr2_1:61108739-61108758 Msa0215720:CDS 30.0%
TATAATGAACATCTCGACTA+TGG + chr2_1:61108803-61108822 Msa0215720:CDS 30.0%
TATTCTCTAATTGTGAGACT+CGG + chr2_1:61108998-61109017 Msa0215720:intron 30.0%
!! GATTTTCTTAACCTTTAGGA+AGG - chr2_1:61109489-61109508 None:intergenic 30.0%
TCCTAAAGGTTAAGAAAATC+AGG + chr2_1:61109489-61109508 Msa0215720:intron 30.0%
TTATGAATATCAGGTCAACA+TGG + chr2_1:61109620-61109639 Msa0215720:intron 30.0%
!!! TTGCTTCTGTGATTTTAACT+AGG - chr2_1:61109722-61109741 None:intergenic 30.0%
!! AAAAGTATCAGCATGATGTA+TGG + chr2_1:61109796-61109815 Msa0215720:intron 30.0%
ATATCGTATGGAACAAAGAA+TGG + chr2_1:61109978-61109997 Msa0215720:intron 30.0%
! ATCATATTAACTTGGCAAGA+TGG + chr2_1:61110077-61110096 Msa0215720:intron 30.0%
TAGAGCCCATTATGTAAAAA+TGG + chr2_1:61110239-61110258 Msa0215720:intron 30.0%
TGATTGGCATTTACAATACA+AGG - chr2_1:61110410-61110429 None:intergenic 30.0%
TGTATTGTAAATGCCAATCA+TGG + chr2_1:61110410-61110429 Msa0215720:intron 30.0%
TGCATTCTAATTACCATGAT+TGG - chr2_1:61110426-61110445 None:intergenic 30.0%
TCATGGTAATTAGAATGCAT+AGG + chr2_1:61110427-61110446 Msa0215720:intron 30.0%
AATGCATAGGACACATATAT+TGG + chr2_1:61110440-61110459 Msa0215720:intron 30.0%
AAAAGTTATACCACATCAGA+TGG - chr2_1:61110538-61110557 None:intergenic 30.0%
! GTGGTATAACTTTTCTAATC+AGG + chr2_1:61110544-61110563 Msa0215720:intron 30.0%
! GTATAACTTTTCTAATCAGG+TGG + chr2_1:61110547-61110566 Msa0215720:intron 30.0%
AAAATGAATCACGACTTCAT+GGG + chr2_1:61110784-61110803 Msa0215720:intron 30.0%
GAATTTATCTTGGTTAGTGT+TGG + chr2_1:61110983-61111002 Msa0215720:intron 30.0%
ATTGAATGTGACCAATACAA+TGG + chr2_1:61111037-61111056 Msa0215720:intron 30.0%
! ATTTTTGTGAAATGTTGGGT+TGG + chr2_1:61111253-61111272 Msa0215720:intron 30.0%
!!! TCCATTTTTGGGTTCTTAAA+CGG - chr2_1:61111346-61111365 None:intergenic 30.0%
AAGTAGGAGTAATTCTTAGA+TGG - chr2_1:61111392-61111411 None:intergenic 30.0%
TCATTAGTCAAAATAGTCAG+TGG + chr2_1:61111543-61111562 Msa0215720:intron 30.0%
TTGAAGCTAGAAACATCATA+GGG - chr2_1:61111918-61111937 None:intergenic 30.0%
! TTTGAAGCTAGAAACATCAT+AGG - chr2_1:61111919-61111938 None:intergenic 30.0%
!! TGTCATATTGCTTTTCAGAA+CGG + chr2_1:61111941-61111960 Msa0215720:intron 30.0%
! TGTAATAACTTGTAAAGAGC+TGG + chr2_1:61111967-61111986 Msa0215720:intron 30.0%
! GCTTTTTGTGAAGATGAAAA+TGG - chr2_1:61112007-61112026 None:intergenic 30.0%
TTTGATAGAATGGTGAAGAA+TGG - chr2_1:61112047-61112066 None:intergenic 30.0%
AGTTGAATGGTTTGATAGAA+TGG - chr2_1:61112057-61112076 None:intergenic 30.0%
CTAACCACCTATGATTATAA+GGG + chr2_1:61112433-61112452 Msa0215720:intron 30.0%
ACAGTAACCCTTATAATCAT+AGG - chr2_1:61112443-61112462 None:intergenic 30.0%
!! ATTTTCAAGAAACAGTGTTG+GGG - chr2_1:61112939-61112958 None:intergenic 30.0%
!! GAATTTTCAAGAAACAGTGT+TGG - chr2_1:61112941-61112960 None:intergenic 30.0%
TTTCTTGAAAATTCCACTAC+CGG + chr2_1:61112947-61112966 Msa0215720:intron 30.0%
ATGATTATCTAATCACATGC+TGG - chr2_1:61112982-61113001 None:intergenic 30.0%
TAGAGAGAACCAAAAAACAT+TGG - chr2_1:61113104-61113123 None:intergenic 30.0%
TGAATTAGAAAAGGTTTGCA+TGG + chr2_1:61113500-61113519 Msa0215720:intron 30.0%
!! CTCTTTAAGTGGACTGTTTA+AGG + chr2_1:61106152-61106171 Msa0215720:intron 35.0%
CATCACGAAAACTGTATTGA+GGG - chr2_1:61106204-61106223 None:intergenic 35.0%
AATGTCTCTACGAATTTCCT+TGG - chr2_1:61106661-61106680 None:intergenic 35.0%
AAGGAAATTCGTAGAGACAT+TGG + chr2_1:61106660-61106679 Msa0215720:intron 35.0%
! ATTTTGAACTCAGACCCATT+TGG - chr2_1:61106719-61106738 None:intergenic 35.0%
GGTCTGAGTTCAAAATGAAT+TGG + chr2_1:61106723-61106742 Msa0215720:CDS 35.0%
AAAATGAATTGGGTACAACG+AGG + chr2_1:61106734-61106753 Msa0215720:CDS 35.0%
! ATGATGTTTGGCTTCAGAAT+TGG + chr2_1:61106759-61106778 Msa0215720:CDS 35.0%
! GTAGTTTTCCAATACAAAGG+AGG + chr2_1:61106818-61106837 Msa0215720:CDS 35.0%
CAATGATGAACAAGAAGCTA+AGG + chr2_1:61106907-61106926 Msa0215720:CDS 35.0%
!!! CTTGCCTGAAATTTTTTGCA+GGG - chr2_1:61107107-61107126 None:intergenic 35.0%
!!! ACTTGCCTGAAATTTTTTGC+AGG - chr2_1:61107108-61107127 None:intergenic 35.0%
AACATAAATAAAGTGGGTCC+CGG - chr2_1:61107209-61107228 None:intergenic 35.0%
! ATTTCTTAGCTTTCTTACCG+CGG - chr2_1:61107371-61107390 None:intergenic 35.0%
GTGAAACTAGGATTCTCATT+GGG - chr2_1:61107441-61107460 None:intergenic 35.0%
AGTGAAACTAGGATTCTCAT+TGG - chr2_1:61107442-61107461 None:intergenic 35.0%
TGAAAGTCTCTCACACATTT+AGG - chr2_1:61107548-61107567 None:intergenic 35.0%
TAAATCATGACCTGAAACAG+AGG + chr2_1:61107865-61107884 Msa0215720:intron 35.0%
!!! GACAGTTTTTTAATGCAGGT+TGG + chr2_1:61108005-61108024 Msa0215720:intron 35.0%
!!! GTTTTTTAATGCAGGTTGGT+TGG + chr2_1:61108009-61108028 Msa0215720:intron 35.0%
!! TGGTTGGAAGTCATTTTCAA+AGG + chr2_1:61108025-61108044 Msa0215720:CDS 35.0%
CGAAGAAGATATGGAATATG+TGG + chr2_1:61108391-61108410 Msa0215720:CDS 35.0%
! ATGGAATATGTGGGCAATTT+TGG + chr2_1:61108401-61108420 Msa0215720:CDS 35.0%
! TGTCTTTTTAACAGCTCACT+TGG - chr2_1:61108716-61108735 None:intergenic 35.0%
AGAGATTGCAAAGTAAAGAC+TGG + chr2_1:61108857-61108876 Msa0215720:CDS 35.0%
TGTGCAAAATCATGTGTTCA+AGG + chr2_1:61108907-61108926 Msa0215720:CDS 35.0%
!!! CTTGTGTCTTGCCATTTTAA+GGG + chr2_1:61108956-61108975 Msa0215720:intron 35.0%
!!! TTGTGTCTTGCCATTTTAAG+GGG + chr2_1:61108957-61108976 Msa0215720:intron 35.0%
TTTCTGCACTGAATCATCTT+AGG - chr2_1:61109283-61109302 None:intergenic 35.0%
AGAATCTTGAAAAAAGGACG+TGG - chr2_1:61109393-61109412 None:intergenic 35.0%
TCAACACATATCCTTCCTAA+AGG + chr2_1:61109475-61109494 Msa0215720:intron 35.0%
! GCCTGATTTTCTTAACCTTT+AGG - chr2_1:61109493-61109512 None:intergenic 35.0%
TTTAGTACTCTAGCTGTTAG+TGG - chr2_1:61109584-61109603 None:intergenic 35.0%
!!! AGTGGCAATTTTTTACTGCA+AGG - chr2_1:61109649-61109668 None:intergenic 35.0%
! ATTGTGTTTTCAGCTCAAAG+TGG - chr2_1:61109667-61109686 None:intergenic 35.0%
TGCTTAAGAATCTCCAATCA+AGG - chr2_1:61109854-61109873 None:intergenic 35.0%
TTGAAAGAGCTACCTTATAC+AGG + chr2_1:61109919-61109938 Msa0215720:intron 35.0%
TGGAACAAAGAATGGTTACT+TGG + chr2_1:61109986-61110005 Msa0215720:intron 35.0%
AACAAAGAATGGTTACTTGG+AGG + chr2_1:61109989-61110008 Msa0215720:intron 35.0%
AAAGACTGAAGTGAGATTTG+TGG + chr2_1:61110045-61110064 Msa0215720:intron 35.0%
GACTAGACATGAAGAATTGT+AGG - chr2_1:61110196-61110215 None:intergenic 35.0%
! AACCAAATATTCTGAGAGCT+TGG + chr2_1:61110333-61110352 Msa0215720:intron 35.0%
TTCCTCTTACTAACATGTTG+TGG - chr2_1:61110597-61110616 None:intergenic 35.0%
GAAAATGAATCACGACTTCA+TGG + chr2_1:61110783-61110802 Msa0215720:intron 35.0%
! TTGGATTTTCTCTCTCTATG+AGG + chr2_1:61111002-61111021 Msa0215720:intron 35.0%
AGGGTCTTAACCATTTAAGA+CGG + chr2_1:61111090-61111109 Msa0215720:intron 35.0%
! CTAATAGGTACCGTCTTAAA+TGG - chr2_1:61111103-61111122 None:intergenic 35.0%
! CATTTAAGACGGTACCTATT+AGG + chr2_1:61111101-61111120 Msa0215720:intron 35.0%
TACCTATTAGGTACTCCATT+GGG + chr2_1:61111113-61111132 Msa0215720:intron 35.0%
TTAAGTAAGATTCTCCCCAA+TGG - chr2_1:61111131-61111150 None:intergenic 35.0%
GGAGGAATTGAGTTCTTATT+AGG + chr2_1:61111274-61111293 Msa0215720:intron 35.0%
TCCGTTTAAGAACCCAAAAA+TGG + chr2_1:61111342-61111361 Msa0215720:intron 35.0%
!! CAATGGAGACATCCATTTTT+GGG - chr2_1:61111357-61111376 None:intergenic 35.0%
! ACAATGGAGACATCCATTTT+TGG - chr2_1:61111358-61111377 None:intergenic 35.0%
TTTCACATCACCTTAGAGTA+GGG - chr2_1:61111439-61111458 None:intergenic 35.0%
! TTTTCACATCACCTTAGAGT+AGG - chr2_1:61111440-61111459 None:intergenic 35.0%
! CGATTTTTGAATGTAGTCGA+TGG - chr2_1:61111812-61111831 None:intergenic 35.0%
TAAATACACAGCCTAGCTAA+CGG + chr2_1:61111844-61111863 Msa0215720:intron 35.0%
TTGGCAAAATTAGTACTCCA+TGG + chr2_1:61112272-61112291 Msa0215720:intron 35.0%
GCTAACCACCTATGATTATA+AGG + chr2_1:61112432-61112451 Msa0215720:intron 35.0%
GTAACCCTTATAATCATAGG+TGG - chr2_1:61112440-61112459 None:intergenic 35.0%
ATCACTTGGACTCAATCACT+TGG + chr2_1:61106120-61106139 Msa0215720:intron 40.0%
GGTCATAGGAACTCTTTAAG+TGG + chr2_1:61106141-61106160 Msa0215720:intron 40.0%
CCATCACGAAAACTGTATTG+AGG - chr2_1:61106205-61106224 None:intergenic 40.0%
! CCTCAATACAGTTTTCGTGA+TGG + chr2_1:61106202-61106221 Msa0215720:intron 40.0%
GTGCAAGAATAGAGCAAGAA+TGG - chr2_1:61106250-61106269 None:intergenic 40.0%
TCATGTATTAGTGCTACGCA+TGG + chr2_1:61106423-61106442 Msa0215720:intron 40.0%
TGTTCTTGCAGATGATTCCA+AGG + chr2_1:61106641-61106660 Msa0215720:intron 40.0%
TTTGGAAGTCTAAGGGATGT+TGG - chr2_1:61106701-61106720 None:intergenic 40.0%
ACATCCCTTAGACTTCCAAA+TGG + chr2_1:61106701-61106720 Msa0215720:CDS 40.0%
CATCCCTTAGACTTCCAAAT+GGG + chr2_1:61106702-61106721 Msa0215720:CDS 40.0%
AGACCCATTTGGAAGTCTAA+GGG - chr2_1:61106708-61106727 None:intergenic 40.0%
! TACAACGAGGTGATGATGTT+TGG + chr2_1:61106747-61106766 Msa0215720:CDS 40.0%
! TTTGGCTTCAGAATTGGAAG+AGG + chr2_1:61106765-61106784 Msa0215720:CDS 40.0%
AATCTGACCCTCCTTTGTAT+TGG - chr2_1:61106829-61106848 None:intergenic 40.0%
!! TGTGTTGAGGTTCTGAATGA+CGG + chr2_1:61106965-61106984 Msa0215720:CDS 40.0%
TTGTCAATGTTTGTCCCTTG+AGG - chr2_1:61107061-61107080 None:intergenic 40.0%
GCAACCCTGCAAAAAATTTC+AGG + chr2_1:61107100-61107119 Msa0215720:CDS 40.0%
TTATCCCGATCTCATGTTGA+AGG + chr2_1:61107468-61107487 Msa0215720:intron 40.0%
TATGGCCTTCAACATGAGAT+CGG - chr2_1:61107476-61107495 None:intergenic 40.0%
TCATGTTGAAGGCCATAGAT+TGG + chr2_1:61107479-61107498 Msa0215720:intron 40.0%
AAGAGAAACATTTGGGGGTT+TGG - chr2_1:61107606-61107625 None:intergenic 40.0%
GAATGAGTTATTGCAAGGGA+AGG + chr2_1:61107917-61107936 Msa0215720:CDS 40.0%
!! TTAGAAGTGTTGATGAGGAC+AGG + chr2_1:61107946-61107965 Msa0215720:CDS 40.0%
!! TAGAAGTGTTGATGAGGACA+GGG + chr2_1:61107947-61107966 Msa0215720:CDS 40.0%
AACAGCTGCCTTAAAACACA+AGG + chr2_1:61108437-61108456 Msa0215720:CDS 40.0%
! TCCTGAGACCTTGTGTTTTA+AGG - chr2_1:61108448-61108467 None:intergenic 40.0%
! AATTCGGTGGAGTTGAAAGT+AGG + chr2_1:61108752-61108771 Msa0215720:CDS 40.0%
! ATTCGGTGGAGTTGAAAGTA+GGG + chr2_1:61108753-61108772 Msa0215720:CDS 40.0%
ATGAACATCTCGACTATGGA+TGG + chr2_1:61108807-61108826 Msa0215720:CDS 40.0%
GACTATGGATGGTTCACTAA+AGG + chr2_1:61108818-61108837 Msa0215720:CDS 40.0%
!!! GCTTGTGTCTTGCCATTTTA+AGG + chr2_1:61108955-61108974 Msa0215720:intron 40.0%
TCTTGATGAACCTTGAGGAT+TGG - chr2_1:61109144-61109163 None:intergenic 40.0%
CAATGTCTTGATGAACCTTG+AGG - chr2_1:61109149-61109168 None:intergenic 40.0%
CATCAAGACATTGTCTTCCT+CGG + chr2_1:61109156-61109175 Msa0215720:intron 40.0%
GAAGTGAGATTTGTGGTATG+TGG + chr2_1:61110052-61110071 Msa0215720:intron 40.0%
AGCCAAGCTCTCAGAATATT+TGG - chr2_1:61110338-61110357 None:intergenic 40.0%
ATCAGGTGGAAATGTCACAT+AGG + chr2_1:61110561-61110580 Msa0215720:intron 40.0%
! GAATTTGAAGTGGAGTTGCT+CGG + chr2_1:61110758-61110777 Msa0215720:intron 40.0%
CACCATCATCACTATTGTTG+CGG + chr2_1:61110840-61110859 Msa0215720:intron 40.0%
TAACACGACGATAGAGAAAC+TGG - chr2_1:61110898-61110917 None:intergenic 40.0%
AGTTTCTCTATCGTCGTGTT+AGG + chr2_1:61110897-61110916 Msa0215720:intron 40.0%
ATGGAATTCGATAACGCTTC+GGG - chr2_1:61110931-61110950 None:intergenic 40.0%
GATGGAATTCGATAACGCTT+CGG - chr2_1:61110932-61110951 None:intergenic 40.0%
ATGTGACCAATACAATGGTC+TGG + chr2_1:61111042-61111061 Msa0215720:intron 40.0%
GTACCTATTAGGTACTCCAT+TGG + chr2_1:61111112-61111131 Msa0215720:intron 40.0%
ACCTATTAGGTACTCCATTG+GGG + chr2_1:61111114-61111133 Msa0215720:intron 40.0%
!! TTAAGACCCCCACTTTTAAG+CGG + chr2_1:61111147-61111166 Msa0215720:intron 40.0%
TGAGGATTCCGCTTAAAAGT+GGG - chr2_1:61111158-61111177 None:intergenic 40.0%
!! TTTGTGAAATGTTGGGTTGG+AGG + chr2_1:61111256-61111275 Msa0215720:intron 40.0%
AATGGATGTCTCCATTGTAG+AGG + chr2_1:61111360-61111379 Msa0215720:intron 40.0%
TTCACATCACCTTAGAGTAG+GGG - chr2_1:61111438-61111457 None:intergenic 40.0%
TGAGAATAATGCCGTTAGCT+AGG - chr2_1:61111858-61111877 None:intergenic 40.0%
GCTAGAAACATCATAGGGAT+AGG - chr2_1:61111913-61111932 None:intergenic 40.0%
!!! CAGGGAATGCCAATGTTTTT+TGG + chr2_1:61113092-61113111 Msa0215720:intron 40.0%
TCAAGTGTTCACTATGGACG+TGG + chr2_1:61105707-61105726 Msa0215720:CDS 45.0%
CAAGTGTTCACTATGGACGT+GGG + chr2_1:61105708-61105727 Msa0215720:CDS 45.0%
TTGAAGCTGGCGAAGTTGAA+TGG - chr2_1:61105765-61105784 None:intergenic 45.0%
!! CTAGTTCTTGGTCTTGAAGC+TGG - chr2_1:61105778-61105797 None:intergenic 45.0%
!! GCAGGTTAGCTTACATGACA+GGG - chr2_1:61105956-61105975 None:intergenic 45.0%
!! AGCAGGTTAGCTTACATGAC+AGG - chr2_1:61105957-61105976 None:intergenic 45.0%
GGTGGAACTCATTGATCACT+TGG + chr2_1:61106106-61106125 Msa0215720:intron 45.0%
GGACTCAATCACTTGGTCAT+AGG + chr2_1:61106127-61106146 Msa0215720:intron 45.0%
ATTAGTGCTACGCATGGCTT+TGG + chr2_1:61106429-61106448 Msa0215720:intron 45.0%
CAGACCCATTTGGAAGTCTA+AGG - chr2_1:61106709-61106728 None:intergenic 45.0%
! CTTTTTCTTGAGGGGTTGTC+TGG - chr2_1:61106999-61107018 None:intergenic 45.0%
ATGGCCTTCAACATGAGATC+GGG - chr2_1:61107475-61107494 None:intergenic 45.0%
ATGTAGGTAGCCTCTGTTTC+AGG - chr2_1:61107878-61107897 None:intergenic 45.0%
TGAAACAGAGGCTACCTACA+TGG + chr2_1:61107877-61107896 Msa0215720:intron 45.0%
TACCATTATCCCAGCCACAA+AGG + chr2_1:61108118-61108137 Msa0215720:CDS 45.0%
TTCCTTTGTGGCTGGGATAA+TGG - chr2_1:61108123-61108142 None:intergenic 45.0%
GACAATGCCCGAAGAAGATA+TGG + chr2_1:61108382-61108401 Msa0215720:CDS 45.0%
GCCTTAAAACACAAGGTCTC+AGG + chr2_1:61108444-61108463 Msa0215720:CDS 45.0%
TTCGGTGGAGTTGAAAGTAG+GGG + chr2_1:61108754-61108773 Msa0215720:CDS 45.0%
TGAAAGTAGGGGAAGGAACA+TGG + chr2_1:61108765-61108784 Msa0215720:CDS 45.0%
! GGAAGGAACATGGTTTGTAG+AGG + chr2_1:61108775-61108794 Msa0215720:CDS 45.0%
ATGGATGGTTCACTAAAGGC+TGG + chr2_1:61108822-61108841 Msa0215720:CDS 45.0%
TGCAACTGTGTTCTTCCCAT+TGG + chr2_1:61109028-61109047 Msa0215720:intron 45.0%
AAATCAGAAGGCAGTCCAAC+AGG + chr2_1:61109113-61109132 Msa0215720:intron 45.0%
TGATGAACCTTGAGGATTGG+AGG - chr2_1:61109141-61109160 None:intergenic 45.0%
TCTTTGATTAAAGGCGACCG+AGG - chr2_1:61109176-61109195 None:intergenic 45.0%
GGCATGATCAGCATATCGTA+TGG + chr2_1:61109966-61109985 Msa0215720:intron 45.0%
GTCGATTACTCCATCTGATG+TGG + chr2_1:61110525-61110544 Msa0215720:intron 45.0%
AGGTGGAAATGTCACATAGG+CGG + chr2_1:61110564-61110583 Msa0215720:intron 45.0%
AATGTCACATAGGCGGTTAG+TGG + chr2_1:61110571-61110590 Msa0215720:intron 45.0%
GGCCACAACATGTTAGTAAG+AGG + chr2_1:61110592-61110611 Msa0215720:intron 45.0%
! GATGATGGTGATAGTGACGA+CGG - chr2_1:61110830-61110849 None:intergenic 45.0%
! GATGTTGATTACGGCGTCAA+TGG - chr2_1:61110866-61110885 None:intergenic 45.0%
! CGGCTACTCGATGTTGATTA+CGG - chr2_1:61110875-61110894 None:intergenic 45.0%
GCAAGACCAGACCATTGTAT+TGG - chr2_1:61111051-61111070 None:intergenic 45.0%
TTGCGAAGACCATCTCCAAT+GGG + chr2_1:61111067-61111086 Msa0215720:intron 45.0%
AATGGTTAAGACCCTCCCAT+TGG - chr2_1:61111085-61111104 None:intergenic 45.0%
! TCCCCAATGGAGTACCTAAT+AGG - chr2_1:61111118-61111137 None:intergenic 45.0%
AGGATTCCGCTTAAAAGTGG+GGG - chr2_1:61111156-61111175 None:intergenic 45.0%
GAGGATTCCGCTTAAAAGTG+GGG - chr2_1:61111157-61111176 None:intergenic 45.0%
GTGAGGATTCCGCTTAAAAG+TGG - chr2_1:61111159-61111178 None:intergenic 45.0%
! CAGACAGGGACATCTAAAGT+AGG - chr2_1:61111408-61111427 None:intergenic 45.0%
TTACAGCTGGGGAAGTTGAA+TGG - chr2_1:61112070-61112089 None:intergenic 45.0%
!! AAGCTCTTGGTCTTACAGCT+GGG - chr2_1:61112082-61112101 None:intergenic 45.0%
TGAGTGTGCTTACAAGCTCT+TGG - chr2_1:61112095-61112114 None:intergenic 45.0%
!!! TATTAATTTCATTATTATTT+TGG + chr2_1:61108166-61108185 Msa0215720:intron 5.0%
!!! GTTTTTTTATTTAAATTTAT+GGG + chr2_1:61112494-61112513 Msa0215720:intron 5.0%
GCTGGCGAAGTTGAATGGTT+TGG - chr2_1:61105760-61105779 None:intergenic 50.0%
AAGGAAAACCCTGACAGAGC+TGG - chr2_1:61105980-61105999 None:intergenic 50.0%
CTCGCGAGCGATTCATCATT+TGG + chr2_1:61106085-61106104 Msa0215720:intron 50.0%
GCGAGCGATTCATCATTTGG+TGG + chr2_1:61106088-61106107 Msa0215720:intron 50.0%
ACTGTTGCTGCTACACCTCA+AGG + chr2_1:61107043-61107062 Msa0215720:CDS 50.0%
CTGTTGCTGCTACACCTCAA+GGG + chr2_1:61107044-61107063 Msa0215720:CDS 50.0%
GCAGAGGCTAATAGAGACAG+AGG + chr2_1:61107342-61107361 Msa0215720:intron 50.0%
GAGGCTAATAGAGACAGAGG+AGG + chr2_1:61107345-61107364 Msa0215720:intron 50.0%
CTTTGGGCATGGTTCCTTTG+TGG - chr2_1:61108135-61108154 None:intergenic 50.0%
! CCTTGAAACTGCTTTGGGCA+TGG - chr2_1:61108146-61108165 None:intergenic 50.0%
CCATGCCCAAAGCAGTTTCA+AGG + chr2_1:61108143-61108162 Msa0215720:CDS 50.0%
!! TCTGCTTTTGATCCCCGACA+AGG + chr2_1:61108317-61108336 Msa0215720:intron 50.0%
GTGGAGTTGAAAGTAGGGGA+AGG + chr2_1:61108758-61108777 Msa0215720:CDS 50.0%
!! TGAGGATTGGAGGTACCTGT+TGG - chr2_1:61109131-61109150 None:intergenic 50.0%
ACAGGTACCTCCAATCCTCA+AGG + chr2_1:61109131-61109150 Msa0215720:intron 50.0%
ACCTTATACAGGAAGCCCCA+AGG + chr2_1:61109930-61109949 Msa0215720:intron 50.0%
TCCTTGGGGCTTCCTGTATA+AGG - chr2_1:61109934-61109953 None:intergenic 50.0%
CCCTCTGATTGTCTTCCTTG+GGG - chr2_1:61109948-61109967 None:intergenic 50.0%
CCCCAAGGAAGACAATCAGA+GGG + chr2_1:61109945-61109964 Msa0215720:intron 50.0%
GCCCTCTGATTGTCTTCCTT+GGG - chr2_1:61109949-61109968 None:intergenic 50.0%
TGCCCTCTGATTGTCTTCCT+TGG - chr2_1:61109950-61109969 None:intergenic 50.0%
! TTCTGAGAGCTTGGCTGCAA+TGG + chr2_1:61110342-61110361 Msa0215720:intron 50.0%
AATCACGACTTCATGGGCGT+GGG + chr2_1:61110790-61110809 Msa0215720:intron 50.0%
GGCCGCAACAATAGTGATGA+TGG - chr2_1:61110845-61110864 None:intergenic 50.0%
CACGACGATAGAGAAACTGG+CGG - chr2_1:61110895-61110914 None:intergenic 50.0%
CTCTATCGTCGTGTTAGGTG+TGG + chr2_1:61110902-61110921 Msa0215720:intron 50.0%
GAATTCGATAACGCTTCGGG+TGG - chr2_1:61110928-61110947 None:intergenic 50.0%
CTTGCGAAGACCATCTCCAA+TGG + chr2_1:61111066-61111085 Msa0215720:intron 50.0%
GAAGACCATCTCCAATGGGA+GGG + chr2_1:61111071-61111090 Msa0215720:intron 50.0%
TAAGACCCTCCCATTGGAGA+TGG - chr2_1:61111079-61111098 None:intergenic 50.0%
GATGGTCAGAGCCTCTACAA+TGG - chr2_1:61111374-61111393 None:intergenic 50.0%
!! AGCTCTTGGTCTTACAGCTG+GGG - chr2_1:61112081-61112100 None:intergenic 50.0%
!! CAAGCTCTTGGTCTTACAGC+TGG - chr2_1:61112083-61112102 None:intergenic 50.0%
CACATGCTGGATGTTGACAC+CGG - chr2_1:61112969-61112988 None:intergenic 50.0%
TGGACGTGGGAGTGAAGCTA+AGG + chr2_1:61105721-61105740 Msa0215720:CDS 55.0%
GGACGTGGGAGTGAAGCTAA+GGG + chr2_1:61105722-61105741 Msa0215720:CDS 55.0%
TAACCTGCTCCAGCTCTGTC+AGG + chr2_1:61105968-61105987 Msa0215720:intron 55.0%
AACCTGCTCCAGCTCTGTCA+GGG + chr2_1:61105969-61105988 Msa0215720:intron 55.0%
TTTGCGCGCTCTCTCAGATG+TGG + chr2_1:61106788-61106807 Msa0215720:CDS 55.0%
AATAGAGACAGAGGAGGCCG+CGG + chr2_1:61107351-61107370 Msa0215720:intron 55.0%
! GTGTTGATGAGGACAGGGCA+CGG + chr2_1:61107952-61107971 Msa0215720:CDS 55.0%
GGCATGGTTCCTTTGTGGCT+GGG - chr2_1:61108130-61108149 None:intergenic 55.0%
TGCATGTCGACGACCTTGTC+GGG - chr2_1:61108333-61108352 None:intergenic 55.0%
CTGCATGTCGACGACCTTGT+CGG - chr2_1:61108334-61108353 None:intergenic 55.0%
GCCCCAAGGAAGACAATCAG+AGG + chr2_1:61109944-61109963 Msa0215720:intron 55.0%
GAATCACGACTTCATGGGCG+TGG + chr2_1:61110789-61110808 Msa0215720:intron 55.0%
CGAAGACCATCTCCAATGGG+AGG + chr2_1:61111070-61111089 Msa0215720:intron 55.0%
TGCCTGTCACCCCTACTCTA+AGG + chr2_1:61111426-61111445 Msa0215720:intron 55.0%
CACCTTAGAGTAGGGGTGAC+AGG - chr2_1:61111431-61111450 None:intergenic 55.0%
CTGGATGTTGACACCGGTAG+TGG - chr2_1:61112963-61112982 None:intergenic 55.0%
AACCCTGACAGAGCTGGAGC+AGG - chr2_1:61105974-61105993 None:intergenic 60.0%
GGGCATGGTTCCTTTGTGGC+TGG - chr2_1:61108131-61108150 None:intergenic 60.0%
GCATGTCGACGACCTTGTCG+GGG - chr2_1:61108332-61108351 None:intergenic 60.0%
GTAGGGGTGACAGGCAGACA+GGG - chr2_1:61111422-61111441 None:intergenic 60.0%
AGTAGGGGTGACAGGCAGAC+AGG - chr2_1:61111423-61111442 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 61105704 61113786 61105704 ID=Msa0215720;Name=Msa0215720
chr2_1 mRNA 61105704 61113786 61105704 ID=Msa0215720-mRNA-1;Parent=Msa0215720;Name=Msa0215720-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|0.11|0.2|10|0|516
chr2_1 exon 61105704 61105796 61105704 ID=Msa0215720-mRNA-1:exon:16849;Parent=Msa0215720-mRNA-1
chr2_1 exon 61106674 61106840 61106674 ID=Msa0215720-mRNA-1:exon:16850;Parent=Msa0215720-mRNA-1
chr2_1 exon 61106877 61107125 61106877 ID=Msa0215720-mRNA-1:exon:16851;Parent=Msa0215720-mRNA-1
chr2_1 exon 61107356 61107482 61107356 ID=Msa0215720-mRNA-1:exon:16852;Parent=Msa0215720-mRNA-1
chr2_1 exon 61107885 61107977 61107885 ID=Msa0215720-mRNA-1:exon:16853;Parent=Msa0215720-mRNA-1
chr2_1 exon 61108023 61108164 61108023 ID=Msa0215720-mRNA-1:exon:16854;Parent=Msa0215720-mRNA-1
chr2_1 exon 61108354 61108467 61108354 ID=Msa0215720-mRNA-1:exon:16855;Parent=Msa0215720-mRNA-1
chr2_1 exon 61108559 61108617 61108559 ID=Msa0215720-mRNA-1:exon:16856;Parent=Msa0215720-mRNA-1
chr2_1 exon 61108701 61108928 61108701 ID=Msa0215720-mRNA-1:exon:16857;Parent=Msa0215720-mRNA-1
chr2_1 exon 61113508 61113786 61113508 ID=Msa0215720-mRNA-1:exon:16858;Parent=Msa0215720-mRNA-1
chr2_1 CDS 61105704 61105796 61105704 ID=Msa0215720-mRNA-1:cds;Parent=Msa0215720-mRNA-1
chr2_1 CDS 61106674 61106840 61106674 ID=Msa0215720-mRNA-1:cds;Parent=Msa0215720-mRNA-1
chr2_1 CDS 61106877 61107125 61106877 ID=Msa0215720-mRNA-1:cds;Parent=Msa0215720-mRNA-1
chr2_1 CDS 61107356 61107482 61107356 ID=Msa0215720-mRNA-1:cds;Parent=Msa0215720-mRNA-1
chr2_1 CDS 61107885 61107977 61107885 ID=Msa0215720-mRNA-1:cds;Parent=Msa0215720-mRNA-1
chr2_1 CDS 61108023 61108164 61108023 ID=Msa0215720-mRNA-1:cds;Parent=Msa0215720-mRNA-1
chr2_1 CDS 61108354 61108467 61108354 ID=Msa0215720-mRNA-1:cds;Parent=Msa0215720-mRNA-1
chr2_1 CDS 61108559 61108617 61108559 ID=Msa0215720-mRNA-1:cds;Parent=Msa0215720-mRNA-1
chr2_1 CDS 61108701 61108928 61108701 ID=Msa0215720-mRNA-1:cds;Parent=Msa0215720-mRNA-1
chr2_1 CDS 61113508 61113786 61113508 ID=Msa0215720-mRNA-1:cds;Parent=Msa0215720-mRNA-1
Gene Sequence

>Msa0215720

ATGTCAAGTGTTCACTATGGACGTGGGAGTGAAGCTAAGGGAATGCATTTTTACCAAACCATTCAACTTCGCCAGCTTCAAGACCAAGAACTAAGACATTGGAAAGATGTATCAAATCCAACATCCCTTAGACTTCCAAATGGGTCTGAGTTCAAAATGAATTGGGTACAACGAGGTGATGATGTTTGGCTTCAGAATTGGAAGAGGTTTGCGCGCTCTCTCAGATGTGGAGATCTTGTAGTTTTCCAATACAAAGGAGGTTTGGAAATTGACTATTCATGTATGAGATGCAATGATGAACAAGAAGCTAAGGATAGTGATGATGATGACAATGACAATGATTATGATTGTGTTGAGGTTCTGAATGACGGTGAAAATACCAGACAACCCCTCAAGAAAAAGAAAATCAACTCAAATGGCATTGCTACTGTTGCTGCTACACCTCAAGGGACAAACATTGACAAGAGAAAAATTAATATCAATGCAACCCTGCAAAAAATTTCAGGCAAAGACAGAGGAGGCCGCGGTAAGAAAGCTAAGAAATGCACAAAAACTAAACATGGGAATGAGAGAAGCTGCACAAATTATCATCCCAATGAGAATCCTAGTTTCACTCTCAAATTATCCCGATCTCATAGGCTACCTACATGGTTTTCAAACGAATACATGAATGAGTTATTGCAAGGGAAGGCAACAATTAGAAGTGTTGATGAGGACAGGGCACGGTACGTTGGTTGGAAGTCATTTTCAAAGGAACATGACTTAAAAGTTGGTGATGCATGTAAATTTGAGATGACTCAACGCGAACCACTTTCATTCACAATTACCATTATCCCAGCCACAAAGGAACCATGCCCAAAGCAGTTTCAAGAAAACCAACAAGTGCAAATAAAATCAGAGACAATGCCCGAAGAAGATATGGAATATGTGGGCAATTTTGGAGAACAAATTTCAAACAGCTGCCTTAAAACACAAGGTCTCAGGAATTCTGTAAGTCCGAATTTACATGACAAATTCAAGGTTTTTGTGACATCATTAGACAAGTTGGTTGTACTACCAAGTGAGCTGTTAAAAAGACATAATATATTTAGTGGAAATTCGGTGGAGTTGAAAGTAGGGGAAGGAACATGGTTTGTAGAGGTGAGTTATAATGAACATCTCGACTATGGATGGTTCACTAAAGGCTGGCAAGAGTTTCTGAGAGATTGCAAAGTAAAGACTGGAGACACTTGCTTGTTTGAGATGATTGATGTGCAAAATCATGTGTTCAAGAAAAGGTTTGCATGGTCACTTAGATGTAGAGATCTTTTAGTTTTTCAATATAAAGGAGGGTCATATTTTCATGTCGTTATATTAGATGAAAGTAAATTAGAAATTGACTATTCAAGTTTGAGATACAATGATGACCAAAACTCTAACAAATATCGTAAACAAGAAGAAGAGAGTGATGATGATGATTGTCCTGAGATTTTGAATGATATTACTACTACTTCTACTACACCTCAAAAGACAAATATTGACAAGAGAAAAATTAATATGAATGCAACCTAA

Protein sequence

>Msa0215720

MSSVHYGRGSEAKGMHFYQTIQLRQLQDQELRHWKDVSNPTSLRLPNGSEFKMNWVQRGDDVWLQNWKRFARSLRCGDLVVFQYKGGLEIDYSCMRCNDEQEAKDSDDDDNDNDYDCVEVLNDGENTRQPLKKKKINSNGIATVAATPQGTNIDKRKININATLQKISGKDRGGRGKKAKKCTKTKHGNERSCTNYHPNENPSFTLKLSRSHRLPTWFSNEYMNELLQGKATIRSVDEDRARYVGWKSFSKEHDLKVGDACKFEMTQREPLSFTITIIPATKEPCPKQFQENQQVQIKSETMPEEDMEYVGNFGEQISNSCLKTQGLRNSVSPNLHDKFKVFVTSLDKLVVLPSELLKRHNIFSGNSVELKVGEGTWFVEVSYNEHLDYGWFTKGWQEFLRDCKVKTGDTCLFEMIDVQNHVFKKRFAWSLRCRDLLVFQYKGGSYFHVVILDESKLEIDYSSLRYNDDQNSNKYRKQEEESDDDDCPEILNDITTTSTTPQKTNIDKRKINMNAT*