AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0215740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0215740 MtrunA17_Chr1g0163261 88.215 297 35 0 1 297 1 297 0.0 527
Msa0215740 MtrunA17_Chr1g0163231 56.376 298 100 9 1 285 1 281 1.62e-102 305
Msa0215740 MtrunA17_Chr1g0163251 49.405 336 150 8 1 329 1 323 1.33e-94 288
Msa0215740 MtrunA17_Chr1g0163181 41.895 401 187 6 1 370 1 386 1.29e-93 287
Msa0215740 MtrunA17_Chr1g0171611 54.671 289 107 8 1 285 1 269 1.33e-90 274
Msa0215740 MtrunA17_Chr1g0163201 43.169 366 147 8 24 366 18 345 7.14e-85 263
Msa0215740 MtrunA17_Chr1g0163111 42.365 203 99 5 176 373 3 192 2.23e-41 145
Msa0215740 MtrunA17_Chr1g0163151 41.463 205 88 3 162 366 2 174 2.30e-40 142
Msa0215740 MtrunA17_Chr1g0163241 53.191 141 57 3 24 155 22 162 6.98e-40 139
Msa0215740 MtrunA17_Chr6g0476171 50.355 141 67 3 157 294 6 146 3.04e-35 129
Msa0215740 MtrunA17_Chr3g0131891 32.423 293 178 9 6 283 16 303 4.43e-35 131
Msa0215740 MtrunA17_Chr7g0233561 31.290 310 169 10 6 283 15 312 1.01e-34 130
Msa0215740 MtrunA17_Chr1g0162151 50.000 136 62 2 163 298 3 132 1.82e-34 126
Msa0215740 MtrunA17_Chr1g0163091 50.000 136 62 2 163 298 3 132 1.99e-34 125
Msa0215740 MtrunA17_Chr1g0163191 53.211 109 47 1 1 109 1 105 3.78e-33 121
Msa0215740 MtrunA17_Chr7g0233541 33.571 280 164 8 25 283 2 280 5.04e-33 125
Msa0215740 MtrunA17_Chr7g0233531 34.559 272 155 10 25 283 2 263 2.20e-31 120
Msa0215740 MtrunA17_Chr7g0233521 33.564 289 135 11 25 283 2 263 3.06e-31 120
Msa0215740 MtrunA17_Chr8g0390841 31.269 323 183 12 8 303 38 348 3.18e-31 124
Msa0215740 MtrunA17_Chr4g0067431 28.912 294 173 9 9 273 15 301 7.46e-30 117
Msa0215740 MtrunA17_Chr1g0163101 40.764 157 80 4 9 155 17 170 5.20e-27 105
Msa0215740 MtrunA17_Chr1g0163131 27.027 296 195 7 5 282 14 306 7.22e-27 108
Msa0215740 MtrunA17_Chr1g0208771 28.767 292 171 9 24 287 12 294 5.64e-26 108
Msa0215740 MtrunA17_Chr1g0162161 40.411 146 66 4 25 155 4 143 9.36e-26 101
Msa0215740 MtrunA17_Chr1g0163221 29.562 274 176 8 9 271 11 278 1.02e-25 106
Msa0215740 MtrunA17_Chr7g0233571 34.434 212 119 6 4 197 5 214 1.40e-25 103
Msa0215740 MtrunA17_Chr1g0163071 26.510 298 178 5 25 288 2 292 6.46e-24 100
Msa0215740 MtrunA17_Chr1g0163081 38.849 139 73 3 25 155 6 140 1.48e-21 90.1
Msa0215740 MtrunA17_Chr5g0419201 40.741 108 62 1 3 108 10 117 2.15e-21 90.9
Msa0215740 MtrunA17_Chr1g0163121 50.575 87 42 1 23 109 9 94 2.59e-21 89.4
Msa0215740 MtrunA17_Chr1g0163141 33.333 162 78 4 23 155 9 169 3.51e-21 90.1
Msa0215740 MtrunA17_Chr3g0103181 25.714 280 194 6 6 281 9 278 1.77e-20 90.5
Msa0215740 MtrunA17_Chr6g0476181 39.024 123 74 1 25 147 2 123 2.05e-20 87.4
Msa0215740 MtrunA17_Chr3g0103151 44.118 102 53 2 6 105 9 108 2.37e-20 87.0
Msa0215740 MtrunA17_Chr3g0103191 39.167 120 68 3 6 122 9 126 2.41e-18 83.6
Msa0215740 MtrunA17_Chr6g0467351 37.121 132 74 4 9 137 15 140 2.58e-18 83.2
Msa0215740 MtrunA17_Chr3g0103171 22.989 261 197 3 24 281 5 264 1.98e-17 81.3
Msa0215740 MtrunA17_Chr1g0163161 35.606 132 68 4 37 155 1 128 1.48e-14 70.1
Msa0215740 MtrunA17_Chr1g0163061 39.000 100 58 2 9 105 15 114 9.07e-14 70.9
Msa0215740 MtrunA17_Chr5g0419211 36.047 86 54 1 205 289 11 96 9.11e-12 61.6
Msa0215740 MtrunA17_Chr4g0033961 36.364 99 61 1 9 105 6 104 1.09e-11 65.9
Msa0215740 MtrunA17_Chr3g0077411 23.427 286 174 9 9 281 262 515 2.27e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0215740 AT3G18990.1 25.731 342 189 11 6 286 2 339 1.80e-20 91.7
Msa0215740 AT3G18990.2 25.439 342 190 11 6 286 2 339 7.72e-20 90.5
Msa0215740 AT4G01580.1 31.469 143 92 3 7 147 28 166 1.99e-17 80.1
Msa0215740 AT3G18960.2 28.662 157 94 4 7 147 28 182 6.52e-12 64.7
Msa0215740 AT3G18960.1 28.662 157 94 4 7 147 28 182 1.28e-11 63.9

Find 56 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGCTAAACAAGATGTATTT+TGG 0.183994 2_1:+61151780 Msa0215740:CDS
TTATGCCAAAGGATGTTATT+TGG 0.223238 2_1:+61152318 Msa0215740:CDS
TTCAGCTTCAACCTTTATAT+TGG 0.225744 2_1:-61151954 None:intergenic
TGTTTCAAAGTTGAAATATT+TGG 0.227189 2_1:+61151905 Msa0215740:CDS
TGACATTTCAACTTCAAAAC+TGG 0.265312 2_1:-61152290 None:intergenic
AAATTTGGTGGAGTTGAAAA+TGG 0.280707 2_1:+61153675 Msa0215740:CDS
TGTAGCTCCACAAAATATTT+AGG 0.280715 2_1:-61151713 None:intergenic
GAAAAGGTGGCAAGAGAAAA+AGG 0.281037 2_1:+61152041 Msa0215740:CDS
ACATCTTGTTTAGCACCATT+TGG 0.328942 2_1:-61151773 None:intergenic
AAGAGGATGTCATGAAAATT+TGG 0.332779 2_1:+61153660 Msa0215740:CDS
GCAAAGAGCAAAGACAATAA+AGG 0.337712 2_1:+61153087 Msa0215740:CDS
TGGAGCGTGACGGAGATATT+TGG 0.354418 2_1:+61151804 Msa0215740:CDS
ATAAAGGGACTTCAAGTTCT+AGG 0.354574 2_1:+61153103 Msa0215740:CDS
CAAAATCAAGAACTGCAAAA+TGG 0.354682 2_1:+61151567 Msa0215740:CDS
AATAAACTATTCCAATATAA+AGG 0.363838 2_1:+61151943 Msa0215740:CDS
AGCAAGAAATTATCATCCTT+TGG 0.369605 2_1:+61152261 Msa0215740:CDS
AAAGAATGCAAAGTGGAGAT+TGG 0.382118 2_1:+61153716 Msa0215740:CDS
CATCTTGTTTAGCACCATTT+GGG 0.395094 2_1:-61151772 None:intergenic
GACAATAAAGGTTATAAAGA+AGG 0.408163 2_1:+61153042 Msa0215740:intron
ACATACCAAATAACATCCTT+TGG 0.421503 2_1:-61152323 None:intergenic
CAAAGAGCAAAGACAATAAA+GGG 0.423420 2_1:+61153088 Msa0215740:CDS
TGAAAATGGATGGACAATCT+TGG 0.424466 2_1:+61153689 Msa0215740:CDS
AAAATATATAATTTGAAACT+TGG 0.446327 2_1:+61152839 Msa0215740:CDS
AACTTTGCAGGTTGTAATAG+AGG 0.470896 2_1:+61152184 Msa0215740:intron
TTTGGGAGAGTAAAGACTAC+TGG 0.484305 2_1:-61151755 None:intergenic
GACAATGTTACTAATACTAA+TGG 0.484869 2_1:+61151998 Msa0215740:CDS
AGTACATCTCAAAGGAGAAA+AGG 0.489671 2_1:+61152025 Msa0215740:CDS
AATATTTGGTCGCAATACAT+TGG 0.491389 2_1:+61151919 Msa0215740:CDS
CCAATGGAGTTTATGAAAAG+AGG 0.499540 2_1:+61153643 Msa0215740:CDS
CTCCTCTCTTGCTCGAGTAA+TGG 0.510615 2_1:-61152915 None:intergenic
TTTAAGAAGTTGAAGTTGCA+AGG 0.514255 2_1:+61152944 Msa0215740:CDS
GACATTTCAACTTCAAAACT+GGG 0.526404 2_1:-61152289 None:intergenic
ATGATCTTGAAGAACTTTCG+AGG 0.530699 2_1:-61151543 None:intergenic
ACAATAAAGGTTATAAAGAA+GGG 0.530892 2_1:+61153043 Msa0215740:intron
ATGGTAATAGTGAATAAAAG+TGG 0.534500 2_1:-61152896 None:intergenic
TTGGTGGAGTTGAAAATGGA+TGG 0.537978 2_1:+61153679 Msa0215740:CDS
GTAGTCTTTACTCTCCCAAA+TGG 0.552023 2_1:+61151758 Msa0215740:CDS
CATCTACTGTGACCACTGGT+TGG 0.552617 2_1:+61152804 Msa0215740:CDS
TAGAGGAGGCAAGATTAAGA+AGG 0.558763 2_1:+61152201 Msa0215740:CDS
AAATCATCTACTGTGACCAC+TGG 0.561649 2_1:+61152800 Msa0215740:CDS
AGGATGTCATGAAAATTTGG+TGG 0.562321 2_1:+61153663 Msa0215740:CDS
AACTTCAACTTCTTAAAGCT+AGG 0.570828 2_1:-61152938 None:intergenic
TACCATTACTCGAGCAAGAG+AGG 0.576066 2_1:+61152913 Msa0215740:CDS
TAATAGTGAATAAAAGTGGT+TGG 0.584021 2_1:-61152892 None:intergenic
ATGTCACGATCTTATGCCAA+AGG 0.590157 2_1:+61152307 Msa0215740:CDS
TTCATCAACTCTAAATCTTG+CGG 0.597151 2_1:-61152735 None:intergenic
GCTAAATGACTTCCAACCAG+TGG 0.615117 2_1:-61152816 None:intergenic
TGATCTTGAAGAACTTTCGA+GGG 0.617342 2_1:-61151542 None:intergenic
ACATCTCAAAGGAGAAAAGG+TGG 0.624210 2_1:+61152028 Msa0215740:CDS
ATTTAGAGTTGATGAAGACA+TGG 0.625733 2_1:+61152742 Msa0215740:CDS
TTTGCAGGTTGTAATAGAGG+AGG 0.626297 2_1:+61152187 Msa0215740:intron
TATATGCAGGATGTACCCAA+TGG 0.635208 2_1:+61153627 Msa0215740:intron
ATGGTGCTAGTACATCTCAA+AGG 0.644614 2_1:+61152017 Msa0215740:CDS
TATTGAAACAGAGGATACCA+AGG 0.667785 2_1:+61152675 Msa0215740:intron
TGGTTTAAAAGAATGCAAAG+TGG 0.669390 2_1:+61153709 Msa0215740:CDS
ATTGCGAAATCTCTTGTACG+TGG 0.685092 2_1:+61151848 Msa0215740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAATCCTTAAAAAAAA+AGG - chr2_1:61152571-61152590 None:intergenic 10.0%
!!! TTTTATAAAAGTGTAAAAAA+TGG + chr2_1:61152594-61152613 Msa0215740:intron 10.0%
!!! AAAATATATAATTTGAAACT+TGG + chr2_1:61152839-61152858 Msa0215740:CDS 10.0%
!! AAAAATCTCAAAATAATATA+TGG + chr2_1:61153340-61153359 Msa0215740:intron 10.0%
!! AATATAATCCTTAAAAAAAA+AGG - chr2_1:61152571-61152590 None:intergenic 10.0%
!!! TTTTATAAAAGTGTAAAAAA+TGG + chr2_1:61152594-61152613 Msa0215740:intron 10.0%
!!! AAAATATATAATTTGAAACT+TGG + chr2_1:61152839-61152858 Msa0215740:CDS 10.0%
!! AAAAATCTCAAAATAATATA+TGG + chr2_1:61153340-61153359 Msa0215740:intron 10.0%
!!! ATATTTGGTTTCAAAAAAAT+TGG + chr2_1:61151819-61151838 Msa0215740:CDS 15.0%
!!! TATTTGGTTTCAAAAAAATT+GGG + chr2_1:61151820-61151839 Msa0215740:CDS 15.0%
!!! GTTCTTGTTTTTAAATATAA+AGG + chr2_1:61151875-61151894 Msa0215740:CDS 15.0%
!! AATAAACTATTCCAATATAA+AGG + chr2_1:61151943-61151962 Msa0215740:CDS 15.0%
!!! ATTTTAAGCCTTTTTTTTTA+AGG + chr2_1:61152560-61152579 Msa0215740:intron 15.0%
!!! TTTTTCTAACTTTAAAGTTT+TGG + chr2_1:61153157-61153176 Msa0215740:intron 15.0%
!!! TTACTATGTAGATATTTTTT+TGG + chr2_1:61153495-61153514 Msa0215740:intron 15.0%
!!! ATATTTGGTTTCAAAAAAAT+TGG + chr2_1:61151819-61151838 Msa0215740:CDS 15.0%
!!! TATTTGGTTTCAAAAAAATT+GGG + chr2_1:61151820-61151839 Msa0215740:CDS 15.0%
!!! GTTCTTGTTTTTAAATATAA+AGG + chr2_1:61151875-61151894 Msa0215740:CDS 15.0%
!! AATAAACTATTCCAATATAA+AGG + chr2_1:61151943-61151962 Msa0215740:CDS 15.0%
!!! ATTTTAAGCCTTTTTTTTTA+AGG + chr2_1:61152560-61152579 Msa0215740:intron 15.0%
!!! TTTTTCTAACTTTAAAGTTT+TGG + chr2_1:61153157-61153176 Msa0215740:intron 15.0%
!!! TTACTATGTAGATATTTTTT+TGG + chr2_1:61153495-61153514 Msa0215740:intron 15.0%
!!! GAGTATTGAACATTTTTAAA+AGG - chr2_1:61151640-61151659 None:intergenic 20.0%
!!! AAACTATTTATTTGTTGTAG+AGG + chr2_1:61151687-61151706 Msa0215740:intron 20.0%
!!! AACTATTTATTTGTTGTAGA+GGG + chr2_1:61151688-61151707 Msa0215740:intron 20.0%
!!! CTTGTTTTTAAATATAAAGG+AGG + chr2_1:61151878-61151897 Msa0215740:CDS 20.0%
!! TGTTTCAAAGTTGAAATATT+TGG + chr2_1:61151905-61151924 Msa0215740:CDS 20.0%
!!! ACTTTCAAAATTTTCAAATC+TGG + chr2_1:61152348-61152367 Msa0215740:intron 20.0%
!! TTCTCTTAAATATTGTTGAT+AGG - chr2_1:61152519-61152538 None:intergenic 20.0%
!! GAGAAAATACTTGAAAAAAT+TGG + chr2_1:61152706-61152725 Msa0215740:CDS 20.0%
!! AAATACTTGAAAAAATTGGA+AGG + chr2_1:61152710-61152729 Msa0215740:CDS 20.0%
!! AATACTTGAAAAAATTGGAA+GGG + chr2_1:61152711-61152730 Msa0215740:CDS 20.0%
!! ACAATAAAGGTTATAAAGAA+GGG + chr2_1:61153043-61153062 Msa0215740:intron 20.0%
!! ATTTCCTTCAATTATATGTT+TGG + chr2_1:61153204-61153223 Msa0215740:intron 20.0%
!! ACGATTAATTACATAGAATA+TGG + chr2_1:61153472-61153491 Msa0215740:intron 20.0%
!!! GAGTATTGAACATTTTTAAA+AGG - chr2_1:61151640-61151659 None:intergenic 20.0%
!!! AAACTATTTATTTGTTGTAG+AGG + chr2_1:61151687-61151706 Msa0215740:intron 20.0%
!!! AACTATTTATTTGTTGTAGA+GGG + chr2_1:61151688-61151707 Msa0215740:intron 20.0%
!!! CTTGTTTTTAAATATAAAGG+AGG + chr2_1:61151878-61151897 Msa0215740:CDS 20.0%
!! TGTTTCAAAGTTGAAATATT+TGG + chr2_1:61151905-61151924 Msa0215740:CDS 20.0%
!!! ACTTTCAAAATTTTCAAATC+TGG + chr2_1:61152348-61152367 Msa0215740:intron 20.0%
!! TTCTCTTAAATATTGTTGAT+AGG - chr2_1:61152519-61152538 None:intergenic 20.0%
!! GAGAAAATACTTGAAAAAAT+TGG + chr2_1:61152706-61152725 Msa0215740:CDS 20.0%
!! AAATACTTGAAAAAATTGGA+AGG + chr2_1:61152710-61152729 Msa0215740:CDS 20.0%
!! AATACTTGAAAAAATTGGAA+GGG + chr2_1:61152711-61152730 Msa0215740:CDS 20.0%
!! ACAATAAAGGTTATAAAGAA+GGG + chr2_1:61153043-61153062 Msa0215740:intron 20.0%
!! ATTTCCTTCAATTATATGTT+TGG + chr2_1:61153204-61153223 Msa0215740:intron 20.0%
!! ACGATTAATTACATAGAATA+TGG + chr2_1:61153472-61153491 Msa0215740:intron 20.0%
!! TTTTGAATAAGCATAGTTGT+TGG - chr2_1:61151670-61151689 None:intergenic 25.0%
!! TGCTAAACAAGATGTATTTT+GGG + chr2_1:61151781-61151800 Msa0215740:CDS 25.0%
! GACAATGTTACTAATACTAA+TGG + chr2_1:61151998-61152017 Msa0215740:CDS 25.0%
! GCTAATCAGAAAAAAATCAA+AGG + chr2_1:61152079-61152098 Msa0215740:CDS 25.0%
!!! TTTTTTATGTGTAACTTTGC+AGG + chr2_1:61152172-61152191 Msa0215740:intron 25.0%
! TAAGAGAAAACTCTCAAAAT+AGG + chr2_1:61152531-61152550 Msa0215740:intron 25.0%
!! TATTTTCTCGAAAAATACCT+TGG - chr2_1:61152695-61152714 None:intergenic 25.0%
! TAATAGTGAATAAAAGTGGT+TGG - chr2_1:61152895-61152914 None:intergenic 25.0%
! ATGGTAATAGTGAATAAAAG+TGG - chr2_1:61152899-61152918 None:intergenic 25.0%
! TATTTGATCCTTGACAATAA+AGG + chr2_1:61153030-61153049 Msa0215740:intron 25.0%
! CTTTATAACCTTTATTGTCA+AGG - chr2_1:61153041-61153060 None:intergenic 25.0%
! GACAATAAAGGTTATAAAGA+AGG + chr2_1:61153042-61153061 Msa0215740:intron 25.0%
! ATGTCCAAACATATAATTGA+AGG - chr2_1:61153211-61153230 None:intergenic 25.0%
! TTCTATGTAATTAATCGTAC+CGG - chr2_1:61153470-61153489 None:intergenic 25.0%
!!! TAGATATTTTTTTGGTGCAA+TGG + chr2_1:61153503-61153522 Msa0215740:intron 25.0%
! ACATTGTTCTTTATATATGC+AGG + chr2_1:61153614-61153633 Msa0215740:intron 25.0%
!! TTTTGAATAAGCATAGTTGT+TGG - chr2_1:61151670-61151689 None:intergenic 25.0%
!! TGCTAAACAAGATGTATTTT+GGG + chr2_1:61151781-61151800 Msa0215740:CDS 25.0%
! GACAATGTTACTAATACTAA+TGG + chr2_1:61151998-61152017 Msa0215740:CDS 25.0%
! GCTAATCAGAAAAAAATCAA+AGG + chr2_1:61152079-61152098 Msa0215740:CDS 25.0%
!!! TTTTTTATGTGTAACTTTGC+AGG + chr2_1:61152172-61152191 Msa0215740:intron 25.0%
! TAAGAGAAAACTCTCAAAAT+AGG + chr2_1:61152531-61152550 Msa0215740:intron 25.0%
!! TATTTTCTCGAAAAATACCT+TGG - chr2_1:61152695-61152714 None:intergenic 25.0%
! TAATAGTGAATAAAAGTGGT+TGG - chr2_1:61152895-61152914 None:intergenic 25.0%
! ATGGTAATAGTGAATAAAAG+TGG - chr2_1:61152899-61152918 None:intergenic 25.0%
! TATTTGATCCTTGACAATAA+AGG + chr2_1:61153030-61153049 Msa0215740:intron 25.0%
! CTTTATAACCTTTATTGTCA+AGG - chr2_1:61153041-61153060 None:intergenic 25.0%
! GACAATAAAGGTTATAAAGA+AGG + chr2_1:61153042-61153061 Msa0215740:intron 25.0%
! ATGTCCAAACATATAATTGA+AGG - chr2_1:61153211-61153230 None:intergenic 25.0%
! TTCTATGTAATTAATCGTAC+CGG - chr2_1:61153470-61153489 None:intergenic 25.0%
!!! TAGATATTTTTTTGGTGCAA+TGG + chr2_1:61153503-61153522 Msa0215740:intron 25.0%
! ACATTGTTCTTTATATATGC+AGG + chr2_1:61153614-61153633 Msa0215740:intron 25.0%
CAAAATCAAGAACTGCAAAA+TGG + chr2_1:61151567-61151586 Msa0215740:CDS 30.0%
TGTAGCTCCACAAAATATTT+AGG - chr2_1:61151716-61151735 None:intergenic 30.0%
! AATATTTTGTGGAGCTACAT+TGG + chr2_1:61151717-61151736 Msa0215740:CDS 30.0%
! GTGCTAAACAAGATGTATTT+TGG + chr2_1:61151780-61151799 Msa0215740:CDS 30.0%
!! TAAACAAGATGTATTTTGGG+TGG + chr2_1:61151784-61151803 Msa0215740:CDS 30.0%
AATATTTGGTCGCAATACAT+TGG + chr2_1:61151919-61151938 Msa0215740:CDS 30.0%
TTCAGCTTCAACCTTTATAT+TGG - chr2_1:61151957-61151976 None:intergenic 30.0%
AGCAAGAAATTATCATCCTT+TGG + chr2_1:61152261-61152280 Msa0215740:CDS 30.0%
GACATTTCAACTTCAAAACT+GGG - chr2_1:61152292-61152311 None:intergenic 30.0%
TGACATTTCAACTTCAAAAC+TGG - chr2_1:61152293-61152312 None:intergenic 30.0%
TTATGCCAAAGGATGTTATT+TGG + chr2_1:61152318-61152337 Msa0215740:CDS 30.0%
ACATACCAAATAACATCCTT+TGG - chr2_1:61152326-61152345 None:intergenic 30.0%
ACAAACCAATATTGAAACAG+AGG + chr2_1:61152666-61152685 Msa0215740:intron 30.0%
TTCATCAACTCTAAATCTTG+CGG - chr2_1:61152738-61152757 None:intergenic 30.0%
!! ATTTAGAGTTGATGAAGACA+TGG + chr2_1:61152742-61152761 Msa0215740:CDS 30.0%
AACTTCAACTTCTTAAAGCT+AGG - chr2_1:61152941-61152960 None:intergenic 30.0%
TTTAAGAAGTTGAAGTTGCA+AGG + chr2_1:61152944-61152963 Msa0215740:CDS 30.0%
CAAAGAGCAAAGACAATAAA+GGG + chr2_1:61153088-61153107 Msa0215740:CDS 30.0%
!! TTTGGACATTGTTTTTCCTT+TGG + chr2_1:61153222-61153241 Msa0215740:intron 30.0%
TCTATGTAATTAATCGTACC+GGG - chr2_1:61153469-61153488 None:intergenic 30.0%
!!! AGAGATGTTTGTTTTTTGAG+AGG + chr2_1:61153549-61153568 Msa0215740:intron 30.0%
!!! TGTTTTTTGAGAGGATAGAT+AGG + chr2_1:61153558-61153577 Msa0215740:intron 30.0%
! CTCTTTTCATAAACTCCATT+GGG - chr2_1:61153645-61153664 None:intergenic 30.0%
AAGAGGATGTCATGAAAATT+TGG + chr2_1:61153660-61153679 Msa0215740:CDS 30.0%
! AAATTTGGTGGAGTTGAAAA+TGG + chr2_1:61153675-61153694 Msa0215740:CDS 30.0%
TGGTTTAAAAGAATGCAAAG+TGG + chr2_1:61153709-61153728 Msa0215740:CDS 30.0%
CAAAATCAAGAACTGCAAAA+TGG + chr2_1:61151567-61151586 Msa0215740:CDS 30.0%
TGTAGCTCCACAAAATATTT+AGG - chr2_1:61151716-61151735 None:intergenic 30.0%
! AATATTTTGTGGAGCTACAT+TGG + chr2_1:61151717-61151736 Msa0215740:CDS 30.0%
! GTGCTAAACAAGATGTATTT+TGG + chr2_1:61151780-61151799 Msa0215740:CDS 30.0%
!! TAAACAAGATGTATTTTGGG+TGG + chr2_1:61151784-61151803 Msa0215740:CDS 30.0%
AATATTTGGTCGCAATACAT+TGG + chr2_1:61151919-61151938 Msa0215740:CDS 30.0%
TTCAGCTTCAACCTTTATAT+TGG - chr2_1:61151957-61151976 None:intergenic 30.0%
AGCAAGAAATTATCATCCTT+TGG + chr2_1:61152261-61152280 Msa0215740:CDS 30.0%
GACATTTCAACTTCAAAACT+GGG - chr2_1:61152292-61152311 None:intergenic 30.0%
TGACATTTCAACTTCAAAAC+TGG - chr2_1:61152293-61152312 None:intergenic 30.0%
TTATGCCAAAGGATGTTATT+TGG + chr2_1:61152318-61152337 Msa0215740:CDS 30.0%
ACATACCAAATAACATCCTT+TGG - chr2_1:61152326-61152345 None:intergenic 30.0%
ACAAACCAATATTGAAACAG+AGG + chr2_1:61152666-61152685 Msa0215740:intron 30.0%
TTCATCAACTCTAAATCTTG+CGG - chr2_1:61152738-61152757 None:intergenic 30.0%
!! ATTTAGAGTTGATGAAGACA+TGG + chr2_1:61152742-61152761 Msa0215740:CDS 30.0%
AACTTCAACTTCTTAAAGCT+AGG - chr2_1:61152941-61152960 None:intergenic 30.0%
TTTAAGAAGTTGAAGTTGCA+AGG + chr2_1:61152944-61152963 Msa0215740:CDS 30.0%
CAAAGAGCAAAGACAATAAA+GGG + chr2_1:61153088-61153107 Msa0215740:CDS 30.0%
!! TTTGGACATTGTTTTTCCTT+TGG + chr2_1:61153222-61153241 Msa0215740:intron 30.0%
TCTATGTAATTAATCGTACC+GGG - chr2_1:61153469-61153488 None:intergenic 30.0%
!!! AGAGATGTTTGTTTTTTGAG+AGG + chr2_1:61153549-61153568 Msa0215740:intron 30.0%
!!! TGTTTTTTGAGAGGATAGAT+AGG + chr2_1:61153558-61153577 Msa0215740:intron 30.0%
! CTCTTTTCATAAACTCCATT+GGG - chr2_1:61153645-61153664 None:intergenic 30.0%
AAGAGGATGTCATGAAAATT+TGG + chr2_1:61153660-61153679 Msa0215740:CDS 30.0%
! AAATTTGGTGGAGTTGAAAA+TGG + chr2_1:61153675-61153694 Msa0215740:CDS 30.0%
TGGTTTAAAAGAATGCAAAG+TGG + chr2_1:61153709-61153728 Msa0215740:CDS 30.0%
TGATCTTGAAGAACTTTCGA+GGG - chr2_1:61151545-61151564 None:intergenic 35.0%
ATGATCTTGAAGAACTTTCG+AGG - chr2_1:61151546-61151565 None:intergenic 35.0%
! GAGGGTTCCTAAATATTTTG+TGG + chr2_1:61151706-61151725 Msa0215740:intron 35.0%
! CATCTTGTTTAGCACCATTT+GGG - chr2_1:61151775-61151794 None:intergenic 35.0%
! ACATCTTGTTTAGCACCATT+TGG - chr2_1:61151776-61151795 None:intergenic 35.0%
AGTACATCTCAAAGGAGAAA+AGG + chr2_1:61152025-61152044 Msa0215740:CDS 35.0%
TGGCAAGAGAAAAAGGAATA+TGG + chr2_1:61152048-61152067 Msa0215740:CDS 35.0%
AACTTTGCAGGTTGTAATAG+AGG + chr2_1:61152184-61152203 Msa0215740:intron 35.0%
! TCAAAACTGGGATTTTCCAA+AGG - chr2_1:61152280-61152299 None:intergenic 35.0%
GGTATCCTCTGTTTCAATAT+TGG - chr2_1:61152674-61152693 None:intergenic 35.0%
TATTGAAACAGAGGATACCA+AGG + chr2_1:61152675-61152694 Msa0215740:intron 35.0%
GCAAAGAGCAAAGACAATAA+AGG + chr2_1:61153087-61153106 Msa0215740:CDS 35.0%
! ATAAAGGGACTTCAAGTTCT+AGG + chr2_1:61153103-61153122 Msa0215740:CDS 35.0%
TGCTCAAAAACACATCTTCT+CGG + chr2_1:61153129-61153148 Msa0215740:CDS 35.0%
TTGAGAAATTCAGCTACCAA+AGG - chr2_1:61153241-61153260 None:intergenic 35.0%
AGTCTTTGTACAGTTGTACT+AGG + chr2_1:61153270-61153289 Msa0215740:intron 35.0%
! CAGTTGTACTAGGATGTTTT+TGG + chr2_1:61153280-61153299 Msa0215740:intron 35.0%
TGTGTTTATGCAGATTCAGA+AGG + chr2_1:61153392-61153411 Msa0215740:intron 35.0%
AATTAATCGTACCGGGTATT+GGG - chr2_1:61153462-61153481 None:intergenic 35.0%
TAATTAATCGTACCGGGTAT+TGG - chr2_1:61153463-61153482 None:intergenic 35.0%
! CCTCTTTTCATAAACTCCAT+TGG - chr2_1:61153646-61153665 None:intergenic 35.0%
CCAATGGAGTTTATGAAAAG+AGG + chr2_1:61153643-61153662 Msa0215740:CDS 35.0%
AGGATGTCATGAAAATTTGG+TGG + chr2_1:61153663-61153682 Msa0215740:CDS 35.0%
TGAAAATGGATGGACAATCT+TGG + chr2_1:61153689-61153708 Msa0215740:CDS 35.0%
AAAGAATGCAAAGTGGAGAT+TGG + chr2_1:61153716-61153735 Msa0215740:CDS 35.0%
TGATCTTGAAGAACTTTCGA+GGG - chr2_1:61151545-61151564 None:intergenic 35.0%
ATGATCTTGAAGAACTTTCG+AGG - chr2_1:61151546-61151565 None:intergenic 35.0%
! GAGGGTTCCTAAATATTTTG+TGG + chr2_1:61151706-61151725 Msa0215740:intron 35.0%
! CATCTTGTTTAGCACCATTT+GGG - chr2_1:61151775-61151794 None:intergenic 35.0%
! ACATCTTGTTTAGCACCATT+TGG - chr2_1:61151776-61151795 None:intergenic 35.0%
AGTACATCTCAAAGGAGAAA+AGG + chr2_1:61152025-61152044 Msa0215740:CDS 35.0%
TGGCAAGAGAAAAAGGAATA+TGG + chr2_1:61152048-61152067 Msa0215740:CDS 35.0%
AACTTTGCAGGTTGTAATAG+AGG + chr2_1:61152184-61152203 Msa0215740:intron 35.0%
! TCAAAACTGGGATTTTCCAA+AGG - chr2_1:61152280-61152299 None:intergenic 35.0%
GGTATCCTCTGTTTCAATAT+TGG - chr2_1:61152674-61152693 None:intergenic 35.0%
TATTGAAACAGAGGATACCA+AGG + chr2_1:61152675-61152694 Msa0215740:intron 35.0%
GCAAAGAGCAAAGACAATAA+AGG + chr2_1:61153087-61153106 Msa0215740:CDS 35.0%
! ATAAAGGGACTTCAAGTTCT+AGG + chr2_1:61153103-61153122 Msa0215740:CDS 35.0%
TGCTCAAAAACACATCTTCT+CGG + chr2_1:61153129-61153148 Msa0215740:CDS 35.0%
TTGAGAAATTCAGCTACCAA+AGG - chr2_1:61153241-61153260 None:intergenic 35.0%
AGTCTTTGTACAGTTGTACT+AGG + chr2_1:61153270-61153289 Msa0215740:intron 35.0%
! CAGTTGTACTAGGATGTTTT+TGG + chr2_1:61153280-61153299 Msa0215740:intron 35.0%
TGTGTTTATGCAGATTCAGA+AGG + chr2_1:61153392-61153411 Msa0215740:intron 35.0%
AATTAATCGTACCGGGTATT+GGG - chr2_1:61153462-61153481 None:intergenic 35.0%
TAATTAATCGTACCGGGTAT+TGG - chr2_1:61153463-61153482 None:intergenic 35.0%
! CCTCTTTTCATAAACTCCAT+TGG - chr2_1:61153646-61153665 None:intergenic 35.0%
CCAATGGAGTTTATGAAAAG+AGG + chr2_1:61153643-61153662 Msa0215740:CDS 35.0%
AGGATGTCATGAAAATTTGG+TGG + chr2_1:61153663-61153682 Msa0215740:CDS 35.0%
TGAAAATGGATGGACAATCT+TGG + chr2_1:61153689-61153708 Msa0215740:CDS 35.0%
AAAGAATGCAAAGTGGAGAT+TGG + chr2_1:61153716-61153735 Msa0215740:CDS 35.0%
TTTGGGAGAGTAAAGACTAC+TGG - chr2_1:61151758-61151777 None:intergenic 40.0%
GTAGTCTTTACTCTCCCAAA+TGG + chr2_1:61151758-61151777 Msa0215740:CDS 40.0%
ATTGCGAAATCTCTTGTACG+TGG + chr2_1:61151848-61151867 Msa0215740:CDS 40.0%
! ATGGTGCTAGTACATCTCAA+AGG + chr2_1:61152017-61152036 Msa0215740:CDS 40.0%
ACATCTCAAAGGAGAAAAGG+TGG + chr2_1:61152028-61152047 Msa0215740:CDS 40.0%
GAAAAGGTGGCAAGAGAAAA+AGG + chr2_1:61152041-61152060 Msa0215740:CDS 40.0%
TTTGCAGGTTGTAATAGAGG+AGG + chr2_1:61152187-61152206 Msa0215740:intron 40.0%
TAGAGGAGGCAAGATTAAGA+AGG + chr2_1:61152201-61152220 Msa0215740:CDS 40.0%
ATGTCACGATCTTATGCCAA+AGG + chr2_1:61152307-61152326 Msa0215740:CDS 40.0%
AAATCATCTACTGTGACCAC+TGG + chr2_1:61152800-61152819 Msa0215740:CDS 40.0%
GCTCAAAAACACATCTTCTC+GGG + chr2_1:61153130-61153149 Msa0215740:CDS 40.0%
TATATGCAGGATGTACCCAA+TGG + chr2_1:61153627-61153646 Msa0215740:intron 40.0%
TTGGTGGAGTTGAAAATGGA+TGG + chr2_1:61153679-61153698 Msa0215740:CDS 40.0%
TTTGGGAGAGTAAAGACTAC+TGG - chr2_1:61151758-61151777 None:intergenic 40.0%
GTAGTCTTTACTCTCCCAAA+TGG + chr2_1:61151758-61151777 Msa0215740:CDS 40.0%
ATTGCGAAATCTCTTGTACG+TGG + chr2_1:61151848-61151867 Msa0215740:CDS 40.0%
! ATGGTGCTAGTACATCTCAA+AGG + chr2_1:61152017-61152036 Msa0215740:CDS 40.0%
ACATCTCAAAGGAGAAAAGG+TGG + chr2_1:61152028-61152047 Msa0215740:CDS 40.0%
GAAAAGGTGGCAAGAGAAAA+AGG + chr2_1:61152041-61152060 Msa0215740:CDS 40.0%
TTTGCAGGTTGTAATAGAGG+AGG + chr2_1:61152187-61152206 Msa0215740:intron 40.0%
TAGAGGAGGCAAGATTAAGA+AGG + chr2_1:61152201-61152220 Msa0215740:CDS 40.0%
ATGTCACGATCTTATGCCAA+AGG + chr2_1:61152307-61152326 Msa0215740:CDS 40.0%
AAATCATCTACTGTGACCAC+TGG + chr2_1:61152800-61152819 Msa0215740:CDS 40.0%
GCTCAAAAACACATCTTCTC+GGG + chr2_1:61153130-61153149 Msa0215740:CDS 40.0%
TATATGCAGGATGTACCCAA+TGG + chr2_1:61153627-61153646 Msa0215740:intron 40.0%
TTGGTGGAGTTGAAAATGGA+TGG + chr2_1:61153679-61153698 Msa0215740:CDS 40.0%
GCTAAATGACTTCCAACCAG+TGG - chr2_1:61152819-61152838 None:intergenic 45.0%
TACCATTACTCGAGCAAGAG+AGG + chr2_1:61152913-61152932 Msa0215740:CDS 45.0%
CTGTGTGAATTCCCAATACC+CGG + chr2_1:61153448-61153467 Msa0215740:intron 45.0%
GCTAAATGACTTCCAACCAG+TGG - chr2_1:61152819-61152838 None:intergenic 45.0%
TACCATTACTCGAGCAAGAG+AGG + chr2_1:61152913-61152932 Msa0215740:CDS 45.0%
CTGTGTGAATTCCCAATACC+CGG + chr2_1:61153448-61153467 Msa0215740:intron 45.0%
!! GTATTTTGGGTGGAGCGTGA+CGG + chr2_1:61151794-61151813 Msa0215740:CDS 50.0%
! TGGAGCGTGACGGAGATATT+TGG + chr2_1:61151804-61151823 Msa0215740:CDS 50.0%
CATCTACTGTGACCACTGGT+TGG + chr2_1:61152804-61152823 Msa0215740:CDS 50.0%
CTCCTCTCTTGCTCGAGTAA+TGG - chr2_1:61152918-61152937 None:intergenic 50.0%
!! GTATTTTGGGTGGAGCGTGA+CGG + chr2_1:61151794-61151813 Msa0215740:CDS 50.0%
! TGGAGCGTGACGGAGATATT+TGG + chr2_1:61151804-61151823 Msa0215740:CDS 50.0%
CATCTACTGTGACCACTGGT+TGG + chr2_1:61152804-61152823 Msa0215740:CDS 50.0%
CTCCTCTCTTGCTCGAGTAA+TGG - chr2_1:61152918-61152937 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 61151528 61153773 61151528 ID=Msa0215740;Name=Msa0215740
chr2_1 mRNA 61151528 61153773 61151528 ID=Msa0215740-mRNA-1;Parent=Msa0215740;Name=Msa0215740-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.8|0.66|1|1|1|6|8|379
chr2_1 exon 61151528 61151596 61151528 ID=Msa0215740-mRNA-1:exon:16835;Parent=Msa0215740-mRNA-1
chr2_1 exon 61151707 61152100 61151707 ID=Msa0215740-mRNA-1:exon:16836;Parent=Msa0215740-mRNA-1
chr2_1 exon 61152194 61152339 61152194 ID=Msa0215740-mRNA-1:exon:16837;Parent=Msa0215740-mRNA-1
chr2_1 exon 61152686 61152965 61152686 ID=Msa0215740-mRNA-1:exon:16838;Parent=Msa0215740-mRNA-1
chr2_1 exon 61153052 61153172 61153052 ID=Msa0215740-mRNA-1:exon:16839;Parent=Msa0215740-mRNA-1
chr2_1 exon 61153636 61153773 61153636 ID=Msa0215740-mRNA-1:exon:16840;Parent=Msa0215740-mRNA-1
chr2_1 CDS 61151528 61151596 61151528 ID=Msa0215740-mRNA-1:cds;Parent=Msa0215740-mRNA-1
chr2_1 CDS 61151707 61152100 61151707 ID=Msa0215740-mRNA-1:cds;Parent=Msa0215740-mRNA-1
chr2_1 CDS 61152194 61152339 61152194 ID=Msa0215740-mRNA-1:cds;Parent=Msa0215740-mRNA-1
chr2_1 CDS 61152686 61152965 61152686 ID=Msa0215740-mRNA-1:cds;Parent=Msa0215740-mRNA-1
chr2_1 CDS 61153052 61153172 61153052 ID=Msa0215740-mRNA-1:cds;Parent=Msa0215740-mRNA-1
chr2_1 CDS 61153636 61153765 61153636 ID=Msa0215740-mRNA-1:cds;Parent=Msa0215740-mRNA-1
chr2_1 three_prime_UTR 61153766 61153773 61153766 ID=Msa0215740-mRNA-1:three_prime_utr;Parent=Msa0215740-mRNA-1
Gene Sequence

>Msa0215740

ATGTCATTTTATCACCCTCGAAAGTTCTTCAAGATCATGCAAAATCAAGAACTGCAAAATGGAGAGCTTAGGGTTCCTAAATATTTTGTGGAGCTACATTGGAAAAATGTATCAAATCCAGTAGTCTTTACTCTCCCAAATGGTGCTAAACAAGATGTATTTTGGGTGGAGCGTGACGGAGATATTTGGTTTCAAAAAAATTGGGAAAAAATTGCGAAATCTCTTGTACGTGGACATGTTCTTGTTTTTAAATATAAAGGAGGATCATGTTTCAAAGTTGAAATATTTGGTCGCAATACATTGGAAATAAACTATTCCAATATAAAGGTTGAAGCTGAAGAAGTTGTTACAGTGAGTGATGACAATGTTACTAATACTAATGGTGCTAGTACATCTCAAAGGAGAAAAGGTGGCAAGAGAAAAAGGAATATGGATCTTGATGCTAATCAGAAAAAAATCAAAGGTTGTAATAGAGGAGGCAAGATTAAGAAGGCTAAAAAATGCTTAAGAACTGAAGCTGTTAAAGAGAGAGCAAGAAATTATCATCCTTTGGAAAATCCCAGTTTTGAAGTTGAAATGTCACGATCTTATGCCAAAGGATGTTATTTGAGGATACCAAGGTATTTTTCGAGAAAATACTTGAAAAAATTGGAAGGGACCGCAAGATTTAGAGTTGATGAAGACATGGCTATAGAAGTGAAGTTGAATTTTGATGATGCTACTAAATCATCTACTGTGACCACTGGTTGGAAGTCATTTAGCAAAATATATAATTTGAAACTTGGTGATGTGTGCAAATTTGTGATGACTCAATGCCAACCACTTTTATTCACTATTACCATTACTCGAGCAAGAGAGGAGCCTAGCTTTAAGAAGTTGAAGTTGCAAGGTTATAAAGAAGGGATCTCTTCTAGTAATAACAATGCAAAGAGCAAAGACAATAAAGGGACTTCAAGTTCTAGGAGCTGCTCAAAAACACATCTTCTCGGGAGTATTTTTCTAACTTTAAAGATGTACCCAATGGAGTTTATGAAAAGAGGATGTCATGAAAATTTGGTGGAGTTGAAAATGGATGGACAATCTTGGTTTAAAAGAATGCAAAGTGGAGATTGGAGATACTTGTCTCTTGAAGATGATTGA

Protein sequence

>Msa0215740

MSFYHPRKFFKIMQNQELQNGELRVPKYFVELHWKNVSNPVVFTLPNGAKQDVFWVERDGDIWFQKNWEKIAKSLVRGHVLVFKYKGGSCFKVEIFGRNTLEINYSNIKVEAEEVVTVSDDNVTNTNGASTSQRRKGGKRKRNMDLDANQKKIKGCNRGGKIKKAKKCLRTEAVKERARNYHPLENPSFEVEMSRSYAKGCYLRIPRYFSRKYLKKLEGTARFRVDEDMAIEVKLNFDDATKSSTVTTGWKSFSKIYNLKLGDVCKFVMTQCQPLLFTITITRAREEPSFKKLKLQGYKEGISSSNNNAKSKDNKGTSSSRSCSKTHLLGSIFLTLKMYPMEFMKRGCHENLVELKMDGQSWFKRMQSGDWRYLSLEDD*