Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0217010 | XP_039686096.1 | 84.472 | 322 | 17 | 11 | 1 | 312 | 1 | 299 | 2.09e-156 | 449 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0217010 | Q2HVP9 | 84.472 | 322 | 17 | 11 | 1 | 312 | 1 | 299 | 9.99e-157 | 449 |
Gene ID | Type | Classification |
---|---|---|
Msa0217010 | TF | NOZZLE |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0217010 | MtrunA17_Chr2g0318721 | 84.472 | 322 | 17 | 11 | 1 | 312 | 1 | 299 | 1.92e-160 | 449 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 59 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTCTCACTGTTTCAGCTTA+TGG | 0.174976 | 2_1:+63237340 | Msa0217010:CDS |
CACCAATTGTGGGAAATTTC+AGG | 0.195712 | 2_1:-63237297 | None:intergenic |
TTATTCTGATTCTGATTGTT+AGG | 0.266258 | 2_1:-63235861 | None:intergenic |
TGTGGGAAATTTCAGGTTCT+TGG | 0.268740 | 2_1:-63237290 | None:intergenic |
CAATAACAATAACACTGTTT+TGG | 0.275143 | 2_1:+63235776 | Msa0217010:CDS |
GGTTGAGAGTGATGAAGATT+TGG | 0.342640 | 2_1:-63235987 | None:intergenic |
AGAACAGAAGGTTGAGGTTG+AGG | 0.346254 | 2_1:-63236821 | None:intergenic |
AGCTCTTTAGAAGGCTCAAA+AGG | 0.358727 | 2_1:-63235954 | None:intergenic |
GGTGGTGGTAACTATGGATA+TGG | 0.361187 | 2_1:+63235900 | Msa0217010:CDS |
AGTGTTATTGTTATTGTTGT+TGG | 0.365355 | 2_1:-63235769 | None:intergenic |
AACCTGAAATTTCCCACAAT+TGG | 0.372059 | 2_1:+63237295 | Msa0217010:CDS |
TCAACTCCTACACCTCTTAG+TGG | 0.420541 | 2_1:-63235564 | None:intergenic |
ATCAGAATCAGAATAACAAC+AGG | 0.420921 | 2_1:+63235868 | Msa0217010:CDS |
ATTGAAGAGAGCTCTTTAGA+AGG | 0.427011 | 2_1:-63235963 | None:intergenic |
AGAAGCAGCTTCACCAATTG+TGG | 0.451010 | 2_1:-63237308 | None:intergenic |
TCATGAACATGATGATGATT+AGG | 0.458805 | 2_1:-63236773 | None:intergenic |
GTTGTTGGTGGTGGTAACTA+TGG | 0.459219 | 2_1:+63235894 | Msa0217010:CDS |
GCTTGCTCAAACGTTGGTGC+TGG | 0.461104 | 2_1:+63235828 | Msa0217010:CDS |
GAAGGTTGAGGTTGAGGTTG+AGG | 0.461364 | 2_1:-63236815 | None:intergenic |
GAGAGGAGCTAGAAACCCTT+TGG | 0.463191 | 2_1:+63236742 | Msa0217010:CDS |
AGGTTGTTGCTGTGCATAGG+AGG | 0.469491 | 2_1:+63237185 | Msa0217010:CDS |
ACCTTGAGGCAAAGATCAAA+AGG | 0.476163 | 2_1:-63236008 | None:intergenic |
GTTAGAGAAGCAGAGGATAG+AGG | 0.478278 | 2_1:+63235590 | Msa0217010:CDS |
GAAGCAGAGGATAGAGGCAT+TGG | 0.478285 | 2_1:+63235596 | Msa0217010:CDS |
TCATCAAGATTGTGCTGAGT+TGG | 0.482620 | 2_1:-63236854 | None:intergenic |
GGTAACTATGGATATGGATC+TGG | 0.489747 | 2_1:+63235906 | Msa0217010:CDS |
GTTGGAGCTTGCTCAAACGT+TGG | 0.497141 | 2_1:+63235822 | Msa0217010:CDS |
TCAGAAAACACGTTTGAATG+AGG | 0.499550 | 2_1:+63236706 | Msa0217010:intron |
AGGAGGGGAAGTTCTTCATC+AGG | 0.500625 | 2_1:+63237202 | Msa0217010:CDS |
AACAGGGTCGTTGTTGGTGG+TGG | 0.507033 | 2_1:+63235885 | Msa0217010:CDS |
AATAACAACAGGGTCGTTGT+TGG | 0.507101 | 2_1:+63235879 | Msa0217010:CDS |
TTTGAGCAAGCTCCAACAAA+AGG | 0.507919 | 2_1:-63235816 | None:intergenic |
GCTCAAACGTTGGTGCTGGA+TGG | 0.518767 | 2_1:+63235832 | Msa0217010:CDS |
CTAGAAACCCTTTGGAGGCA+TGG | 0.527762 | 2_1:+63236750 | Msa0217010:CDS |
GAGGAGAGTAATGTAATGAG+AGG | 0.529842 | 2_1:+63236725 | Msa0217010:CDS |
TGATGTTGAGGAAACTGAAA+TGG | 0.535711 | 2_1:-63235717 | None:intergenic |
AACAACAGGGTCGTTGTTGG+TGG | 0.551873 | 2_1:+63235882 | Msa0217010:CDS |
AAGTTCTTCATCAGGAGGGA+AGG | 0.555848 | 2_1:+63237210 | Msa0217010:CDS |
TTGAACAGTTAGAGAAGCAG+AGG | 0.558284 | 2_1:+63235583 | Msa0217010:CDS |
GATTAGGCCATGCCTCCAAA+GGG | 0.558465 | 2_1:-63236757 | None:intergenic |
GGATAAGCAGAAAGAACAGA+AGG | 0.566886 | 2_1:-63236833 | None:intergenic |
GCTCTTTAGAAGGCTCAAAA+GGG | 0.569253 | 2_1:-63235953 | None:intergenic |
TGATTAGGCCATGCCTCCAA+AGG | 0.575637 | 2_1:-63236758 | None:intergenic |
GGTTGTTGCTGTGCATAGGA+GGG | 0.577962 | 2_1:+63237186 | Msa0217010:CDS |
CTCACTGTTTCAGCTTATGG+AGG | 0.584570 | 2_1:+63237343 | Msa0217010:CDS |
ATTTGCTGTTGATGATGTTG+AGG | 0.585953 | 2_1:-63235729 | None:intergenic |
TTGGTGAGAAAAGCTGAAGC+TGG | 0.589265 | 2_1:+63235615 | Msa0217010:CDS |
GTTGTTGATGAGGATGATCA+AGG | 0.590020 | 2_1:-63235650 | None:intergenic |
TTGTGTTGTAAAGTGTGTGG+AGG | 0.590206 | 2_1:+63237165 | Msa0217010:intron |
GCAGAAAGAACAGAAGGTTG+AGG | 0.592292 | 2_1:-63236827 | None:intergenic |
AGGAGCTAGAAACCCTTTGG+AGG | 0.592534 | 2_1:+63236745 | Msa0217010:CDS |
TGGAGGTTGTTGCTGTGCAT+AGG | 0.593913 | 2_1:+63237182 | Msa0217010:CDS |
GTTGTTGCTGTGCATAGGAG+GGG | 0.608997 | 2_1:+63237187 | Msa0217010:CDS |
GAAGCAGCTTCACCAATTGT+GGG | 0.613866 | 2_1:-63237307 | None:intergenic |
GGAAACTGAAATGGCCCAGT+TGG | 0.639292 | 2_1:-63235708 | None:intergenic |
AGGGGAAGTTCTTCATCAGG+AGG | 0.645014 | 2_1:+63237205 | Msa0217010:CDS |
AACTCAGCACAATCTTGATG+AGG | 0.646299 | 2_1:+63236856 | Msa0217010:CDS |
GGGGAAGTTCTTCATCAGGA+GGG | 0.656793 | 2_1:+63237206 | Msa0217010:CDS |
TCAGAATCAGAATAACAACA+GGG | 0.760807 | 2_1:+63235869 | Msa0217010:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAAATATATTATACCTTG+AGG | - | chr2_1:63236025-63236044 | None:intergenic | 15.0% |
!!! | TGAATAATTTGATTTTTTCT+TGG | + | chr2_1:63236357-63236376 | Msa0217010:intron | 15.0% |
!! | TTAACATTAATATCAACAAA+AGG | - | chr2_1:63236466-63236485 | None:intergenic | 15.0% |
!!! | TGCAATGTTTAATTTTTTTT+TGG | + | chr2_1:63236960-63236979 | Msa0217010:intron | 15.0% |
!! | ATTAAATTAAACATTGTATC+TGG | - | chr2_1:63237100-63237119 | None:intergenic | 15.0% |
!! | ATAAAATATATTATACCTTG+AGG | - | chr2_1:63236025-63236044 | None:intergenic | 15.0% |
!!! | TGAATAATTTGATTTTTTCT+TGG | + | chr2_1:63236357-63236376 | Msa0217010:intron | 15.0% |
!! | TTAACATTAATATCAACAAA+AGG | - | chr2_1:63236466-63236485 | None:intergenic | 15.0% |
!!! | TGCAATGTTTAATTTTTTTT+TGG | + | chr2_1:63236960-63236979 | Msa0217010:intron | 15.0% |
!! | ATTAAATTAAACATTGTATC+TGG | - | chr2_1:63237100-63237119 | None:intergenic | 15.0% |
!! | ACATAAATAACAAAAAGTAG+AGG | - | chr2_1:63236329-63236348 | None:intergenic | 20.0% |
!! | TCAAAAAAAAAATCCACAAA+AGG | - | chr2_1:63236563-63236582 | None:intergenic | 20.0% |
!! | TTAACACTAATATCAACAAA+AGG | - | chr2_1:63236594-63236613 | None:intergenic | 20.0% |
!!! | GATTTTTTTCATGAAAAAGA+TGG | + | chr2_1:63237253-63237272 | Msa0217010:CDS | 20.0% |
!! | ACATAAATAACAAAAAGTAG+AGG | - | chr2_1:63236329-63236348 | None:intergenic | 20.0% |
!! | TCAAAAAAAAAATCCACAAA+AGG | - | chr2_1:63236563-63236582 | None:intergenic | 20.0% |
!! | TTAACACTAATATCAACAAA+AGG | - | chr2_1:63236594-63236613 | None:intergenic | 20.0% |
!!! | GATTTTTTTCATGAAAAAGA+TGG | + | chr2_1:63237253-63237272 | Msa0217010:CDS | 20.0% |
! | AAAACCAAGCAAAAAACAAA+GGG | + | chr2_1:63235514-63235533 | Msa0217010:CDS | 25.0% |
! | AAAAACAAAGGGAGAAAAAA+TGG | + | chr2_1:63235525-63235544 | Msa0217010:CDS | 25.0% |
!! | AGTGTTATTGTTATTGTTGT+TGG | - | chr2_1:63235772-63235791 | None:intergenic | 25.0% |
!! | CAATAACAATAACACTGTTT+TGG | + | chr2_1:63235776-63235795 | Msa0217010:CDS | 25.0% |
! | TTATTCTGATTCTGATTGTT+AGG | - | chr2_1:63235864-63235883 | None:intergenic | 25.0% |
! | ACATTGATATGATTAGATGA+TGG | + | chr2_1:63236108-63236127 | Msa0217010:intron | 25.0% |
! | AAAACCAAGCAAAAAACAAA+GGG | + | chr2_1:63235514-63235533 | Msa0217010:CDS | 25.0% |
! | AAAAACAAAGGGAGAAAAAA+TGG | + | chr2_1:63235525-63235544 | Msa0217010:CDS | 25.0% |
!! | AGTGTTATTGTTATTGTTGT+TGG | - | chr2_1:63235772-63235791 | None:intergenic | 25.0% |
!! | CAATAACAATAACACTGTTT+TGG | + | chr2_1:63235776-63235795 | Msa0217010:CDS | 25.0% |
! | TTATTCTGATTCTGATTGTT+AGG | - | chr2_1:63235864-63235883 | None:intergenic | 25.0% |
! | ACATTGATATGATTAGATGA+TGG | + | chr2_1:63236108-63236127 | Msa0217010:intron | 25.0% |
GAAAACCAAGCAAAAAACAA+AGG | + | chr2_1:63235513-63235532 | Msa0217010:CDS | 30.0% | |
!!! | AACAATAACACTGTTTTGGT+TGG | + | chr2_1:63235780-63235799 | Msa0217010:CDS | 30.0% |
ATCAGAATCAGAATAACAAC+AGG | + | chr2_1:63235868-63235887 | Msa0217010:CDS | 30.0% | |
TCAGAATCAGAATAACAACA+GGG | + | chr2_1:63235869-63235888 | Msa0217010:CDS | 30.0% | |
AAAAAATCCACAAAAGGTAG+AGG | - | chr2_1:63236557-63236576 | None:intergenic | 30.0% | |
! | TCATGAACATGATGATGATT+AGG | - | chr2_1:63236776-63236795 | None:intergenic | 30.0% |
! | CATCATGTTCATGATTTTCT+TGG | + | chr2_1:63236782-63236801 | Msa0217010:CDS | 30.0% |
! | TTTTTGTGTTGTAAAGTGTG+TGG | + | chr2_1:63237162-63237181 | Msa0217010:intron | 30.0% |
GAAAACCAAGCAAAAAACAA+AGG | + | chr2_1:63235513-63235532 | Msa0217010:CDS | 30.0% | |
!!! | AACAATAACACTGTTTTGGT+TGG | + | chr2_1:63235780-63235799 | Msa0217010:CDS | 30.0% |
ATCAGAATCAGAATAACAAC+AGG | + | chr2_1:63235868-63235887 | Msa0217010:CDS | 30.0% | |
TCAGAATCAGAATAACAACA+GGG | + | chr2_1:63235869-63235888 | Msa0217010:CDS | 30.0% | |
AAAAAATCCACAAAAGGTAG+AGG | - | chr2_1:63236557-63236576 | None:intergenic | 30.0% | |
! | TCATGAACATGATGATGATT+AGG | - | chr2_1:63236776-63236795 | None:intergenic | 30.0% |
! | CATCATGTTCATGATTTTCT+TGG | + | chr2_1:63236782-63236801 | Msa0217010:CDS | 30.0% |
! | TTTTTGTGTTGTAAAGTGTG+TGG | + | chr2_1:63237162-63237181 | Msa0217010:intron | 30.0% |
!!! | GTTTTTTGCTTGGTTTTCAG+AGG | - | chr2_1:63235511-63235530 | None:intergenic | 35.0% |
!!! | TTCTCCCTTTGTTTTTTGCT+TGG | - | chr2_1:63235521-63235540 | None:intergenic | 35.0% |
!!! | ACACCTCTTAGTGGTTTTTT+TGG | - | chr2_1:63235558-63235577 | None:intergenic | 35.0% |
! | AAAAAACCACTAAGAGGTGT+AGG | + | chr2_1:63235558-63235577 | Msa0217010:CDS | 35.0% |
! | TGTTGTTGTTGTTGTTGATG+AGG | - | chr2_1:63235663-63235682 | None:intergenic | 35.0% |
!!! | CAACAACAGCTTTTGAAGTA+TGG | + | chr2_1:63235675-63235694 | Msa0217010:CDS | 35.0% |
TGATGTTGAGGAAACTGAAA+TGG | - | chr2_1:63235720-63235739 | None:intergenic | 35.0% | |
!! | ATTTGCTGTTGATGATGTTG+AGG | - | chr2_1:63235732-63235751 | None:intergenic | 35.0% |
! | TCTGGTTATGTTCCTTTTGT+TGG | + | chr2_1:63235804-63235823 | Msa0217010:CDS | 35.0% |
ATTGAAGAGAGCTCTTTAGA+AGG | - | chr2_1:63235966-63235985 | None:intergenic | 35.0% | |
! | TAATGTTCCTCTACCTTTTG+TGG | + | chr2_1:63236547-63236566 | Msa0217010:intron | 35.0% |
TCAGAAAACACGTTTGAATG+AGG | + | chr2_1:63236706-63236725 | Msa0217010:intron | 35.0% | |
! | CATGTTCATGATTTTCTTGG+AGG | + | chr2_1:63236785-63236804 | Msa0217010:CDS | 35.0% |
AACCTGAAATTTCCCACAAT+TGG | + | chr2_1:63237295-63237314 | Msa0217010:CDS | 35.0% | |
!!! | GTTTTTTGCTTGGTTTTCAG+AGG | - | chr2_1:63235511-63235530 | None:intergenic | 35.0% |
!!! | TTCTCCCTTTGTTTTTTGCT+TGG | - | chr2_1:63235521-63235540 | None:intergenic | 35.0% |
!!! | ACACCTCTTAGTGGTTTTTT+TGG | - | chr2_1:63235558-63235577 | None:intergenic | 35.0% |
! | AAAAAACCACTAAGAGGTGT+AGG | + | chr2_1:63235558-63235577 | Msa0217010:CDS | 35.0% |
! | TGTTGTTGTTGTTGTTGATG+AGG | - | chr2_1:63235663-63235682 | None:intergenic | 35.0% |
!!! | CAACAACAGCTTTTGAAGTA+TGG | + | chr2_1:63235675-63235694 | Msa0217010:CDS | 35.0% |
TGATGTTGAGGAAACTGAAA+TGG | - | chr2_1:63235720-63235739 | None:intergenic | 35.0% | |
!! | ATTTGCTGTTGATGATGTTG+AGG | - | chr2_1:63235732-63235751 | None:intergenic | 35.0% |
! | TCTGGTTATGTTCCTTTTGT+TGG | + | chr2_1:63235804-63235823 | Msa0217010:CDS | 35.0% |
ATTGAAGAGAGCTCTTTAGA+AGG | - | chr2_1:63235966-63235985 | None:intergenic | 35.0% | |
! | TAATGTTCCTCTACCTTTTG+TGG | + | chr2_1:63236547-63236566 | Msa0217010:intron | 35.0% |
TCAGAAAACACGTTTGAATG+AGG | + | chr2_1:63236706-63236725 | Msa0217010:intron | 35.0% | |
! | CATGTTCATGATTTTCTTGG+AGG | + | chr2_1:63236785-63236804 | Msa0217010:CDS | 35.0% |
AACCTGAAATTTCCCACAAT+TGG | + | chr2_1:63237295-63237314 | Msa0217010:CDS | 35.0% | |
GCACCAAAAAAACCACTAAG+AGG | + | chr2_1:63235552-63235571 | Msa0217010:CDS | 40.0% | |
TTGAACAGTTAGAGAAGCAG+AGG | + | chr2_1:63235583-63235602 | Msa0217010:CDS | 40.0% | |
! | GTTGTTGATGAGGATGATCA+AGG | - | chr2_1:63235653-63235672 | None:intergenic | 40.0% |
! | TATGGTGCATTTTCACCAAC+TGG | + | chr2_1:63235693-63235712 | Msa0217010:CDS | 40.0% |
! | ATGGTGCATTTTCACCAACT+GGG | + | chr2_1:63235694-63235713 | Msa0217010:CDS | 40.0% |
!!! | AACACTGTTTTGGTTGGTTC+TGG | + | chr2_1:63235786-63235805 | Msa0217010:CDS | 40.0% |
TTTGAGCAAGCTCCAACAAA+AGG | - | chr2_1:63235819-63235838 | None:intergenic | 40.0% | |
AATAACAACAGGGTCGTTGT+TGG | + | chr2_1:63235879-63235898 | Msa0217010:CDS | 40.0% | |
GGTAACTATGGATATGGATC+TGG | + | chr2_1:63235906-63235925 | Msa0217010:CDS | 40.0% | |
! | GCTCTTTAGAAGGCTCAAAA+GGG | - | chr2_1:63235956-63235975 | None:intergenic | 40.0% |
! | AGCTCTTTAGAAGGCTCAAA+AGG | - | chr2_1:63235957-63235976 | None:intergenic | 40.0% |
GGTTGAGAGTGATGAAGATT+TGG | - | chr2_1:63235990-63236009 | None:intergenic | 40.0% | |
! | ACCTTTTGATCTTTGCCTCA+AGG | + | chr2_1:63236007-63236026 | Msa0217010:CDS | 40.0% |
ACCTTGAGGCAAAGATCAAA+AGG | - | chr2_1:63236011-63236030 | None:intergenic | 40.0% | |
GAGGAGAGTAATGTAATGAG+AGG | + | chr2_1:63236725-63236744 | Msa0217010:CDS | 40.0% | |
GGATAAGCAGAAAGAACAGA+AGG | - | chr2_1:63236836-63236855 | None:intergenic | 40.0% | |
TCATCAAGATTGTGCTGAGT+TGG | - | chr2_1:63236857-63236876 | None:intergenic | 40.0% | |
AACTCAGCACAATCTTGATG+AGG | + | chr2_1:63236856-63236875 | Msa0217010:CDS | 40.0% | |
TTGTGTTGTAAAGTGTGTGG+AGG | + | chr2_1:63237165-63237184 | Msa0217010:intron | 40.0% | |
! | AGGGAAGGACAAAGTTTTCA+TGG | + | chr2_1:63237225-63237244 | Msa0217010:CDS | 40.0% |
!! | TGTGGGAAATTTCAGGTTCT+TGG | - | chr2_1:63237293-63237312 | None:intergenic | 40.0% |
CACCAATTGTGGGAAATTTC+AGG | - | chr2_1:63237300-63237319 | None:intergenic | 40.0% | |
TCTCTCACTGTTTCAGCTTA+TGG | + | chr2_1:63237340-63237359 | Msa0217010:CDS | 40.0% | |
GCACCAAAAAAACCACTAAG+AGG | + | chr2_1:63235552-63235571 | Msa0217010:CDS | 40.0% | |
TTGAACAGTTAGAGAAGCAG+AGG | + | chr2_1:63235583-63235602 | Msa0217010:CDS | 40.0% | |
! | GTTGTTGATGAGGATGATCA+AGG | - | chr2_1:63235653-63235672 | None:intergenic | 40.0% |
! | TATGGTGCATTTTCACCAAC+TGG | + | chr2_1:63235693-63235712 | Msa0217010:CDS | 40.0% |
! | ATGGTGCATTTTCACCAACT+GGG | + | chr2_1:63235694-63235713 | Msa0217010:CDS | 40.0% |
!!! | AACACTGTTTTGGTTGGTTC+TGG | + | chr2_1:63235786-63235805 | Msa0217010:CDS | 40.0% |
TTTGAGCAAGCTCCAACAAA+AGG | - | chr2_1:63235819-63235838 | None:intergenic | 40.0% | |
AATAACAACAGGGTCGTTGT+TGG | + | chr2_1:63235879-63235898 | Msa0217010:CDS | 40.0% | |
GGTAACTATGGATATGGATC+TGG | + | chr2_1:63235906-63235925 | Msa0217010:CDS | 40.0% | |
! | GCTCTTTAGAAGGCTCAAAA+GGG | - | chr2_1:63235956-63235975 | None:intergenic | 40.0% |
! | AGCTCTTTAGAAGGCTCAAA+AGG | - | chr2_1:63235957-63235976 | None:intergenic | 40.0% |
GGTTGAGAGTGATGAAGATT+TGG | - | chr2_1:63235990-63236009 | None:intergenic | 40.0% | |
! | ACCTTTTGATCTTTGCCTCA+AGG | + | chr2_1:63236007-63236026 | Msa0217010:CDS | 40.0% |
ACCTTGAGGCAAAGATCAAA+AGG | - | chr2_1:63236011-63236030 | None:intergenic | 40.0% | |
GAGGAGAGTAATGTAATGAG+AGG | + | chr2_1:63236725-63236744 | Msa0217010:CDS | 40.0% | |
GGATAAGCAGAAAGAACAGA+AGG | - | chr2_1:63236836-63236855 | None:intergenic | 40.0% | |
TCATCAAGATTGTGCTGAGT+TGG | - | chr2_1:63236857-63236876 | None:intergenic | 40.0% | |
AACTCAGCACAATCTTGATG+AGG | + | chr2_1:63236856-63236875 | Msa0217010:CDS | 40.0% | |
TTGTGTTGTAAAGTGTGTGG+AGG | + | chr2_1:63237165-63237184 | Msa0217010:intron | 40.0% | |
! | AGGGAAGGACAAAGTTTTCA+TGG | + | chr2_1:63237225-63237244 | Msa0217010:CDS | 40.0% |
!! | TGTGGGAAATTTCAGGTTCT+TGG | - | chr2_1:63237293-63237312 | None:intergenic | 40.0% |
CACCAATTGTGGGAAATTTC+AGG | - | chr2_1:63237300-63237319 | None:intergenic | 40.0% | |
TCTCTCACTGTTTCAGCTTA+TGG | + | chr2_1:63237340-63237359 | Msa0217010:CDS | 40.0% | |
TCAACTCCTACACCTCTTAG+TGG | - | chr2_1:63235567-63235586 | None:intergenic | 45.0% | |
GTTAGAGAAGCAGAGGATAG+AGG | + | chr2_1:63235590-63235609 | Msa0217010:CDS | 45.0% | |
TTGGTGAGAAAAGCTGAAGC+TGG | + | chr2_1:63235615-63235634 | Msa0217010:CDS | 45.0% | |
!! | GTTGTTGGTGGTGGTAACTA+TGG | + | chr2_1:63235894-63235913 | Msa0217010:CDS | 45.0% |
! | GGTGGTGGTAACTATGGATA+TGG | + | chr2_1:63235900-63235919 | Msa0217010:CDS | 45.0% |
AGAACAGAAGGTTGAGGTTG+AGG | - | chr2_1:63236824-63236843 | None:intergenic | 45.0% | |
GCAGAAAGAACAGAAGGTTG+AGG | - | chr2_1:63236830-63236849 | None:intergenic | 45.0% | |
AAGTTCTTCATCAGGAGGGA+AGG | + | chr2_1:63237210-63237229 | Msa0217010:CDS | 45.0% | |
GAAGCAGCTTCACCAATTGT+GGG | - | chr2_1:63237310-63237329 | None:intergenic | 45.0% | |
AGAAGCAGCTTCACCAATTG+TGG | - | chr2_1:63237311-63237330 | None:intergenic | 45.0% | |
CTCACTGTTTCAGCTTATGG+AGG | + | chr2_1:63237343-63237362 | Msa0217010:CDS | 45.0% | |
TCAACTCCTACACCTCTTAG+TGG | - | chr2_1:63235567-63235586 | None:intergenic | 45.0% | |
GTTAGAGAAGCAGAGGATAG+AGG | + | chr2_1:63235590-63235609 | Msa0217010:CDS | 45.0% | |
TTGGTGAGAAAAGCTGAAGC+TGG | + | chr2_1:63235615-63235634 | Msa0217010:CDS | 45.0% | |
!! | GTTGTTGGTGGTGGTAACTA+TGG | + | chr2_1:63235894-63235913 | Msa0217010:CDS | 45.0% |
! | GGTGGTGGTAACTATGGATA+TGG | + | chr2_1:63235900-63235919 | Msa0217010:CDS | 45.0% |
AGAACAGAAGGTTGAGGTTG+AGG | - | chr2_1:63236824-63236843 | None:intergenic | 45.0% | |
GCAGAAAGAACAGAAGGTTG+AGG | - | chr2_1:63236830-63236849 | None:intergenic | 45.0% | |
AAGTTCTTCATCAGGAGGGA+AGG | + | chr2_1:63237210-63237229 | Msa0217010:CDS | 45.0% | |
GAAGCAGCTTCACCAATTGT+GGG | - | chr2_1:63237310-63237329 | None:intergenic | 45.0% | |
AGAAGCAGCTTCACCAATTG+TGG | - | chr2_1:63237311-63237330 | None:intergenic | 45.0% | |
CTCACTGTTTCAGCTTATGG+AGG | + | chr2_1:63237343-63237362 | Msa0217010:CDS | 45.0% | |
!! | TTAAATTAAATAATTAGATA+TGG | - | chr2_1:63237024-63237043 | None:intergenic | 5.0% |
!!! | TTTAATTTAATTTAATTTGA+TGG | + | chr2_1:63237124-63237143 | Msa0217010:intron | 5.0% |
!! | TTAAATTAAATAATTAGATA+TGG | - | chr2_1:63237024-63237043 | None:intergenic | 5.0% |
!!! | TTTAATTTAATTTAATTTGA+TGG | + | chr2_1:63237124-63237143 | Msa0217010:intron | 5.0% |
!! | TGCTTGGTTTTCAGAGGCAG+AGG | - | chr2_1:63235505-63235524 | None:intergenic | 50.0% |
! | GAAGCAGAGGATAGAGGCAT+TGG | + | chr2_1:63235596-63235615 | Msa0217010:CDS | 50.0% |
GGAAACTGAAATGGCCCAGT+TGG | - | chr2_1:63235711-63235730 | None:intergenic | 50.0% | |
! | GTTGGAGCTTGCTCAAACGT+TGG | + | chr2_1:63235822-63235841 | Msa0217010:CDS | 50.0% |
AACAACAGGGTCGTTGTTGG+TGG | + | chr2_1:63235882-63235901 | Msa0217010:CDS | 50.0% | |
GAGAGGAGCTAGAAACCCTT+TGG | + | chr2_1:63236742-63236761 | Msa0217010:CDS | 50.0% | |
AGGAGCTAGAAACCCTTTGG+AGG | + | chr2_1:63236745-63236764 | Msa0217010:CDS | 50.0% | |
! | CTAGAAACCCTTTGGAGGCA+TGG | + | chr2_1:63236750-63236769 | Msa0217010:CDS | 50.0% |
GATTAGGCCATGCCTCCAAA+GGG | - | chr2_1:63236760-63236779 | None:intergenic | 50.0% | |
TGATTAGGCCATGCCTCCAA+AGG | - | chr2_1:63236761-63236780 | None:intergenic | 50.0% | |
GAAGGTTGAGGTTGAGGTTG+AGG | - | chr2_1:63236818-63236837 | None:intergenic | 50.0% | |
TGGAGGTTGTTGCTGTGCAT+AGG | + | chr2_1:63237182-63237201 | Msa0217010:CDS | 50.0% | |
AGGTTGTTGCTGTGCATAGG+AGG | + | chr2_1:63237185-63237204 | Msa0217010:CDS | 50.0% | |
GGTTGTTGCTGTGCATAGGA+GGG | + | chr2_1:63237186-63237205 | Msa0217010:CDS | 50.0% | |
GTTGTTGCTGTGCATAGGAG+GGG | + | chr2_1:63237187-63237206 | Msa0217010:CDS | 50.0% | |
AGGAGGGGAAGTTCTTCATC+AGG | + | chr2_1:63237202-63237221 | Msa0217010:CDS | 50.0% | |
AGGGGAAGTTCTTCATCAGG+AGG | + | chr2_1:63237205-63237224 | Msa0217010:CDS | 50.0% | |
GGGGAAGTTCTTCATCAGGA+GGG | + | chr2_1:63237206-63237225 | Msa0217010:CDS | 50.0% | |
!! | TGCTTGGTTTTCAGAGGCAG+AGG | - | chr2_1:63235505-63235524 | None:intergenic | 50.0% |
! | GAAGCAGAGGATAGAGGCAT+TGG | + | chr2_1:63235596-63235615 | Msa0217010:CDS | 50.0% |
GGAAACTGAAATGGCCCAGT+TGG | - | chr2_1:63235711-63235730 | None:intergenic | 50.0% | |
! | GTTGGAGCTTGCTCAAACGT+TGG | + | chr2_1:63235822-63235841 | Msa0217010:CDS | 50.0% |
AACAACAGGGTCGTTGTTGG+TGG | + | chr2_1:63235882-63235901 | Msa0217010:CDS | 50.0% | |
GAGAGGAGCTAGAAACCCTT+TGG | + | chr2_1:63236742-63236761 | Msa0217010:CDS | 50.0% | |
AGGAGCTAGAAACCCTTTGG+AGG | + | chr2_1:63236745-63236764 | Msa0217010:CDS | 50.0% | |
! | CTAGAAACCCTTTGGAGGCA+TGG | + | chr2_1:63236750-63236769 | Msa0217010:CDS | 50.0% |
GATTAGGCCATGCCTCCAAA+GGG | - | chr2_1:63236760-63236779 | None:intergenic | 50.0% | |
TGATTAGGCCATGCCTCCAA+AGG | - | chr2_1:63236761-63236780 | None:intergenic | 50.0% | |
GAAGGTTGAGGTTGAGGTTG+AGG | - | chr2_1:63236818-63236837 | None:intergenic | 50.0% | |
TGGAGGTTGTTGCTGTGCAT+AGG | + | chr2_1:63237182-63237201 | Msa0217010:CDS | 50.0% | |
AGGTTGTTGCTGTGCATAGG+AGG | + | chr2_1:63237185-63237204 | Msa0217010:CDS | 50.0% | |
GGTTGTTGCTGTGCATAGGA+GGG | + | chr2_1:63237186-63237205 | Msa0217010:CDS | 50.0% | |
GTTGTTGCTGTGCATAGGAG+GGG | + | chr2_1:63237187-63237206 | Msa0217010:CDS | 50.0% | |
AGGAGGGGAAGTTCTTCATC+AGG | + | chr2_1:63237202-63237221 | Msa0217010:CDS | 50.0% | |
AGGGGAAGTTCTTCATCAGG+AGG | + | chr2_1:63237205-63237224 | Msa0217010:CDS | 50.0% | |
GGGGAAGTTCTTCATCAGGA+GGG | + | chr2_1:63237206-63237225 | Msa0217010:CDS | 50.0% | |
GCTTGCTCAAACGTTGGTGC+TGG | + | chr2_1:63235828-63235847 | Msa0217010:CDS | 55.0% | |
!! | GCTCAAACGTTGGTGCTGGA+TGG | + | chr2_1:63235832-63235851 | Msa0217010:CDS | 55.0% |
! | AACAGGGTCGTTGTTGGTGG+TGG | + | chr2_1:63235885-63235904 | Msa0217010:CDS | 55.0% |
GCTTGCTCAAACGTTGGTGC+TGG | + | chr2_1:63235828-63235847 | Msa0217010:CDS | 55.0% | |
!! | GCTCAAACGTTGGTGCTGGA+TGG | + | chr2_1:63235832-63235851 | Msa0217010:CDS | 55.0% |
! | AACAGGGTCGTTGTTGGTGG+TGG | + | chr2_1:63235885-63235904 | Msa0217010:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 63235498 | 63237417 | 63235498 | ID=Msa0217010;Name=Msa0217010 |
chr2_1 | mRNA | 63235498 | 63237417 | 63235498 | ID=Msa0217010-mRNA-1;Parent=Msa0217010;Name=Msa0217010-mRNA-1;_AED=0.00;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|312 |
chr2_1 | exon | 63235498 | 63236028 | 63235498 | ID=Msa0217010-mRNA-1:exon:17611;Parent=Msa0217010-mRNA-1 |
chr2_1 | exon | 63236710 | 63236877 | 63236710 | ID=Msa0217010-mRNA-1:exon:17612;Parent=Msa0217010-mRNA-1 |
chr2_1 | exon | 63237178 | 63237417 | 63237178 | ID=Msa0217010-mRNA-1:exon:17613;Parent=Msa0217010-mRNA-1 |
chr2_1 | CDS | 63235498 | 63236028 | 63235498 | ID=Msa0217010-mRNA-1:cds;Parent=Msa0217010-mRNA-1 |
chr2_1 | CDS | 63236710 | 63236877 | 63236710 | ID=Msa0217010-mRNA-1:cds;Parent=Msa0217010-mRNA-1 |
chr2_1 | CDS | 63237178 | 63237417 | 63237178 | ID=Msa0217010-mRNA-1:cds;Parent=Msa0217010-mRNA-1 |
Gene Sequence |
Protein sequence |