AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0217010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0217010 MtrunA17_Chr2g0318721 84.472 322 17 11 1 312 1 299 1.92e-160 449
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 59 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTCACTGTTTCAGCTTA+TGG 0.174976 2_1:+63237340 Msa0217010:CDS
CACCAATTGTGGGAAATTTC+AGG 0.195712 2_1:-63237297 None:intergenic
TTATTCTGATTCTGATTGTT+AGG 0.266258 2_1:-63235861 None:intergenic
TGTGGGAAATTTCAGGTTCT+TGG 0.268740 2_1:-63237290 None:intergenic
CAATAACAATAACACTGTTT+TGG 0.275143 2_1:+63235776 Msa0217010:CDS
GGTTGAGAGTGATGAAGATT+TGG 0.342640 2_1:-63235987 None:intergenic
AGAACAGAAGGTTGAGGTTG+AGG 0.346254 2_1:-63236821 None:intergenic
AGCTCTTTAGAAGGCTCAAA+AGG 0.358727 2_1:-63235954 None:intergenic
GGTGGTGGTAACTATGGATA+TGG 0.361187 2_1:+63235900 Msa0217010:CDS
AGTGTTATTGTTATTGTTGT+TGG 0.365355 2_1:-63235769 None:intergenic
AACCTGAAATTTCCCACAAT+TGG 0.372059 2_1:+63237295 Msa0217010:CDS
TCAACTCCTACACCTCTTAG+TGG 0.420541 2_1:-63235564 None:intergenic
ATCAGAATCAGAATAACAAC+AGG 0.420921 2_1:+63235868 Msa0217010:CDS
ATTGAAGAGAGCTCTTTAGA+AGG 0.427011 2_1:-63235963 None:intergenic
AGAAGCAGCTTCACCAATTG+TGG 0.451010 2_1:-63237308 None:intergenic
TCATGAACATGATGATGATT+AGG 0.458805 2_1:-63236773 None:intergenic
GTTGTTGGTGGTGGTAACTA+TGG 0.459219 2_1:+63235894 Msa0217010:CDS
GCTTGCTCAAACGTTGGTGC+TGG 0.461104 2_1:+63235828 Msa0217010:CDS
GAAGGTTGAGGTTGAGGTTG+AGG 0.461364 2_1:-63236815 None:intergenic
GAGAGGAGCTAGAAACCCTT+TGG 0.463191 2_1:+63236742 Msa0217010:CDS
AGGTTGTTGCTGTGCATAGG+AGG 0.469491 2_1:+63237185 Msa0217010:CDS
ACCTTGAGGCAAAGATCAAA+AGG 0.476163 2_1:-63236008 None:intergenic
GTTAGAGAAGCAGAGGATAG+AGG 0.478278 2_1:+63235590 Msa0217010:CDS
GAAGCAGAGGATAGAGGCAT+TGG 0.478285 2_1:+63235596 Msa0217010:CDS
TCATCAAGATTGTGCTGAGT+TGG 0.482620 2_1:-63236854 None:intergenic
GGTAACTATGGATATGGATC+TGG 0.489747 2_1:+63235906 Msa0217010:CDS
GTTGGAGCTTGCTCAAACGT+TGG 0.497141 2_1:+63235822 Msa0217010:CDS
TCAGAAAACACGTTTGAATG+AGG 0.499550 2_1:+63236706 Msa0217010:intron
AGGAGGGGAAGTTCTTCATC+AGG 0.500625 2_1:+63237202 Msa0217010:CDS
AACAGGGTCGTTGTTGGTGG+TGG 0.507033 2_1:+63235885 Msa0217010:CDS
AATAACAACAGGGTCGTTGT+TGG 0.507101 2_1:+63235879 Msa0217010:CDS
TTTGAGCAAGCTCCAACAAA+AGG 0.507919 2_1:-63235816 None:intergenic
GCTCAAACGTTGGTGCTGGA+TGG 0.518767 2_1:+63235832 Msa0217010:CDS
CTAGAAACCCTTTGGAGGCA+TGG 0.527762 2_1:+63236750 Msa0217010:CDS
GAGGAGAGTAATGTAATGAG+AGG 0.529842 2_1:+63236725 Msa0217010:CDS
TGATGTTGAGGAAACTGAAA+TGG 0.535711 2_1:-63235717 None:intergenic
AACAACAGGGTCGTTGTTGG+TGG 0.551873 2_1:+63235882 Msa0217010:CDS
AAGTTCTTCATCAGGAGGGA+AGG 0.555848 2_1:+63237210 Msa0217010:CDS
TTGAACAGTTAGAGAAGCAG+AGG 0.558284 2_1:+63235583 Msa0217010:CDS
GATTAGGCCATGCCTCCAAA+GGG 0.558465 2_1:-63236757 None:intergenic
GGATAAGCAGAAAGAACAGA+AGG 0.566886 2_1:-63236833 None:intergenic
GCTCTTTAGAAGGCTCAAAA+GGG 0.569253 2_1:-63235953 None:intergenic
TGATTAGGCCATGCCTCCAA+AGG 0.575637 2_1:-63236758 None:intergenic
GGTTGTTGCTGTGCATAGGA+GGG 0.577962 2_1:+63237186 Msa0217010:CDS
CTCACTGTTTCAGCTTATGG+AGG 0.584570 2_1:+63237343 Msa0217010:CDS
ATTTGCTGTTGATGATGTTG+AGG 0.585953 2_1:-63235729 None:intergenic
TTGGTGAGAAAAGCTGAAGC+TGG 0.589265 2_1:+63235615 Msa0217010:CDS
GTTGTTGATGAGGATGATCA+AGG 0.590020 2_1:-63235650 None:intergenic
TTGTGTTGTAAAGTGTGTGG+AGG 0.590206 2_1:+63237165 Msa0217010:intron
GCAGAAAGAACAGAAGGTTG+AGG 0.592292 2_1:-63236827 None:intergenic
AGGAGCTAGAAACCCTTTGG+AGG 0.592534 2_1:+63236745 Msa0217010:CDS
TGGAGGTTGTTGCTGTGCAT+AGG 0.593913 2_1:+63237182 Msa0217010:CDS
GTTGTTGCTGTGCATAGGAG+GGG 0.608997 2_1:+63237187 Msa0217010:CDS
GAAGCAGCTTCACCAATTGT+GGG 0.613866 2_1:-63237307 None:intergenic
GGAAACTGAAATGGCCCAGT+TGG 0.639292 2_1:-63235708 None:intergenic
AGGGGAAGTTCTTCATCAGG+AGG 0.645014 2_1:+63237205 Msa0217010:CDS
AACTCAGCACAATCTTGATG+AGG 0.646299 2_1:+63236856 Msa0217010:CDS
GGGGAAGTTCTTCATCAGGA+GGG 0.656793 2_1:+63237206 Msa0217010:CDS
TCAGAATCAGAATAACAACA+GGG 0.760807 2_1:+63235869 Msa0217010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATATATTATACCTTG+AGG - chr2_1:63236025-63236044 None:intergenic 15.0%
!!! TGAATAATTTGATTTTTTCT+TGG + chr2_1:63236357-63236376 Msa0217010:intron 15.0%
!! TTAACATTAATATCAACAAA+AGG - chr2_1:63236466-63236485 None:intergenic 15.0%
!!! TGCAATGTTTAATTTTTTTT+TGG + chr2_1:63236960-63236979 Msa0217010:intron 15.0%
!! ATTAAATTAAACATTGTATC+TGG - chr2_1:63237100-63237119 None:intergenic 15.0%
!! ATAAAATATATTATACCTTG+AGG - chr2_1:63236025-63236044 None:intergenic 15.0%
!!! TGAATAATTTGATTTTTTCT+TGG + chr2_1:63236357-63236376 Msa0217010:intron 15.0%
!! TTAACATTAATATCAACAAA+AGG - chr2_1:63236466-63236485 None:intergenic 15.0%
!!! TGCAATGTTTAATTTTTTTT+TGG + chr2_1:63236960-63236979 Msa0217010:intron 15.0%
!! ATTAAATTAAACATTGTATC+TGG - chr2_1:63237100-63237119 None:intergenic 15.0%
!! ACATAAATAACAAAAAGTAG+AGG - chr2_1:63236329-63236348 None:intergenic 20.0%
!! TCAAAAAAAAAATCCACAAA+AGG - chr2_1:63236563-63236582 None:intergenic 20.0%
!! TTAACACTAATATCAACAAA+AGG - chr2_1:63236594-63236613 None:intergenic 20.0%
!!! GATTTTTTTCATGAAAAAGA+TGG + chr2_1:63237253-63237272 Msa0217010:CDS 20.0%
!! ACATAAATAACAAAAAGTAG+AGG - chr2_1:63236329-63236348 None:intergenic 20.0%
!! TCAAAAAAAAAATCCACAAA+AGG - chr2_1:63236563-63236582 None:intergenic 20.0%
!! TTAACACTAATATCAACAAA+AGG - chr2_1:63236594-63236613 None:intergenic 20.0%
!!! GATTTTTTTCATGAAAAAGA+TGG + chr2_1:63237253-63237272 Msa0217010:CDS 20.0%
! AAAACCAAGCAAAAAACAAA+GGG + chr2_1:63235514-63235533 Msa0217010:CDS 25.0%
! AAAAACAAAGGGAGAAAAAA+TGG + chr2_1:63235525-63235544 Msa0217010:CDS 25.0%
!! AGTGTTATTGTTATTGTTGT+TGG - chr2_1:63235772-63235791 None:intergenic 25.0%
!! CAATAACAATAACACTGTTT+TGG + chr2_1:63235776-63235795 Msa0217010:CDS 25.0%
! TTATTCTGATTCTGATTGTT+AGG - chr2_1:63235864-63235883 None:intergenic 25.0%
! ACATTGATATGATTAGATGA+TGG + chr2_1:63236108-63236127 Msa0217010:intron 25.0%
! AAAACCAAGCAAAAAACAAA+GGG + chr2_1:63235514-63235533 Msa0217010:CDS 25.0%
! AAAAACAAAGGGAGAAAAAA+TGG + chr2_1:63235525-63235544 Msa0217010:CDS 25.0%
!! AGTGTTATTGTTATTGTTGT+TGG - chr2_1:63235772-63235791 None:intergenic 25.0%
!! CAATAACAATAACACTGTTT+TGG + chr2_1:63235776-63235795 Msa0217010:CDS 25.0%
! TTATTCTGATTCTGATTGTT+AGG - chr2_1:63235864-63235883 None:intergenic 25.0%
! ACATTGATATGATTAGATGA+TGG + chr2_1:63236108-63236127 Msa0217010:intron 25.0%
GAAAACCAAGCAAAAAACAA+AGG + chr2_1:63235513-63235532 Msa0217010:CDS 30.0%
!!! AACAATAACACTGTTTTGGT+TGG + chr2_1:63235780-63235799 Msa0217010:CDS 30.0%
ATCAGAATCAGAATAACAAC+AGG + chr2_1:63235868-63235887 Msa0217010:CDS 30.0%
TCAGAATCAGAATAACAACA+GGG + chr2_1:63235869-63235888 Msa0217010:CDS 30.0%
AAAAAATCCACAAAAGGTAG+AGG - chr2_1:63236557-63236576 None:intergenic 30.0%
! TCATGAACATGATGATGATT+AGG - chr2_1:63236776-63236795 None:intergenic 30.0%
! CATCATGTTCATGATTTTCT+TGG + chr2_1:63236782-63236801 Msa0217010:CDS 30.0%
! TTTTTGTGTTGTAAAGTGTG+TGG + chr2_1:63237162-63237181 Msa0217010:intron 30.0%
GAAAACCAAGCAAAAAACAA+AGG + chr2_1:63235513-63235532 Msa0217010:CDS 30.0%
!!! AACAATAACACTGTTTTGGT+TGG + chr2_1:63235780-63235799 Msa0217010:CDS 30.0%
ATCAGAATCAGAATAACAAC+AGG + chr2_1:63235868-63235887 Msa0217010:CDS 30.0%
TCAGAATCAGAATAACAACA+GGG + chr2_1:63235869-63235888 Msa0217010:CDS 30.0%
AAAAAATCCACAAAAGGTAG+AGG - chr2_1:63236557-63236576 None:intergenic 30.0%
! TCATGAACATGATGATGATT+AGG - chr2_1:63236776-63236795 None:intergenic 30.0%
! CATCATGTTCATGATTTTCT+TGG + chr2_1:63236782-63236801 Msa0217010:CDS 30.0%
! TTTTTGTGTTGTAAAGTGTG+TGG + chr2_1:63237162-63237181 Msa0217010:intron 30.0%
!!! GTTTTTTGCTTGGTTTTCAG+AGG - chr2_1:63235511-63235530 None:intergenic 35.0%
!!! TTCTCCCTTTGTTTTTTGCT+TGG - chr2_1:63235521-63235540 None:intergenic 35.0%
!!! ACACCTCTTAGTGGTTTTTT+TGG - chr2_1:63235558-63235577 None:intergenic 35.0%
! AAAAAACCACTAAGAGGTGT+AGG + chr2_1:63235558-63235577 Msa0217010:CDS 35.0%
! TGTTGTTGTTGTTGTTGATG+AGG - chr2_1:63235663-63235682 None:intergenic 35.0%
!!! CAACAACAGCTTTTGAAGTA+TGG + chr2_1:63235675-63235694 Msa0217010:CDS 35.0%
TGATGTTGAGGAAACTGAAA+TGG - chr2_1:63235720-63235739 None:intergenic 35.0%
!! ATTTGCTGTTGATGATGTTG+AGG - chr2_1:63235732-63235751 None:intergenic 35.0%
! TCTGGTTATGTTCCTTTTGT+TGG + chr2_1:63235804-63235823 Msa0217010:CDS 35.0%
ATTGAAGAGAGCTCTTTAGA+AGG - chr2_1:63235966-63235985 None:intergenic 35.0%
! TAATGTTCCTCTACCTTTTG+TGG + chr2_1:63236547-63236566 Msa0217010:intron 35.0%
TCAGAAAACACGTTTGAATG+AGG + chr2_1:63236706-63236725 Msa0217010:intron 35.0%
! CATGTTCATGATTTTCTTGG+AGG + chr2_1:63236785-63236804 Msa0217010:CDS 35.0%
AACCTGAAATTTCCCACAAT+TGG + chr2_1:63237295-63237314 Msa0217010:CDS 35.0%
!!! GTTTTTTGCTTGGTTTTCAG+AGG - chr2_1:63235511-63235530 None:intergenic 35.0%
!!! TTCTCCCTTTGTTTTTTGCT+TGG - chr2_1:63235521-63235540 None:intergenic 35.0%
!!! ACACCTCTTAGTGGTTTTTT+TGG - chr2_1:63235558-63235577 None:intergenic 35.0%
! AAAAAACCACTAAGAGGTGT+AGG + chr2_1:63235558-63235577 Msa0217010:CDS 35.0%
! TGTTGTTGTTGTTGTTGATG+AGG - chr2_1:63235663-63235682 None:intergenic 35.0%
!!! CAACAACAGCTTTTGAAGTA+TGG + chr2_1:63235675-63235694 Msa0217010:CDS 35.0%
TGATGTTGAGGAAACTGAAA+TGG - chr2_1:63235720-63235739 None:intergenic 35.0%
!! ATTTGCTGTTGATGATGTTG+AGG - chr2_1:63235732-63235751 None:intergenic 35.0%
! TCTGGTTATGTTCCTTTTGT+TGG + chr2_1:63235804-63235823 Msa0217010:CDS 35.0%
ATTGAAGAGAGCTCTTTAGA+AGG - chr2_1:63235966-63235985 None:intergenic 35.0%
! TAATGTTCCTCTACCTTTTG+TGG + chr2_1:63236547-63236566 Msa0217010:intron 35.0%
TCAGAAAACACGTTTGAATG+AGG + chr2_1:63236706-63236725 Msa0217010:intron 35.0%
! CATGTTCATGATTTTCTTGG+AGG + chr2_1:63236785-63236804 Msa0217010:CDS 35.0%
AACCTGAAATTTCCCACAAT+TGG + chr2_1:63237295-63237314 Msa0217010:CDS 35.0%
GCACCAAAAAAACCACTAAG+AGG + chr2_1:63235552-63235571 Msa0217010:CDS 40.0%
TTGAACAGTTAGAGAAGCAG+AGG + chr2_1:63235583-63235602 Msa0217010:CDS 40.0%
! GTTGTTGATGAGGATGATCA+AGG - chr2_1:63235653-63235672 None:intergenic 40.0%
! TATGGTGCATTTTCACCAAC+TGG + chr2_1:63235693-63235712 Msa0217010:CDS 40.0%
! ATGGTGCATTTTCACCAACT+GGG + chr2_1:63235694-63235713 Msa0217010:CDS 40.0%
!!! AACACTGTTTTGGTTGGTTC+TGG + chr2_1:63235786-63235805 Msa0217010:CDS 40.0%
TTTGAGCAAGCTCCAACAAA+AGG - chr2_1:63235819-63235838 None:intergenic 40.0%
AATAACAACAGGGTCGTTGT+TGG + chr2_1:63235879-63235898 Msa0217010:CDS 40.0%
GGTAACTATGGATATGGATC+TGG + chr2_1:63235906-63235925 Msa0217010:CDS 40.0%
! GCTCTTTAGAAGGCTCAAAA+GGG - chr2_1:63235956-63235975 None:intergenic 40.0%
! AGCTCTTTAGAAGGCTCAAA+AGG - chr2_1:63235957-63235976 None:intergenic 40.0%
GGTTGAGAGTGATGAAGATT+TGG - chr2_1:63235990-63236009 None:intergenic 40.0%
! ACCTTTTGATCTTTGCCTCA+AGG + chr2_1:63236007-63236026 Msa0217010:CDS 40.0%
ACCTTGAGGCAAAGATCAAA+AGG - chr2_1:63236011-63236030 None:intergenic 40.0%
GAGGAGAGTAATGTAATGAG+AGG + chr2_1:63236725-63236744 Msa0217010:CDS 40.0%
GGATAAGCAGAAAGAACAGA+AGG - chr2_1:63236836-63236855 None:intergenic 40.0%
TCATCAAGATTGTGCTGAGT+TGG - chr2_1:63236857-63236876 None:intergenic 40.0%
AACTCAGCACAATCTTGATG+AGG + chr2_1:63236856-63236875 Msa0217010:CDS 40.0%
TTGTGTTGTAAAGTGTGTGG+AGG + chr2_1:63237165-63237184 Msa0217010:intron 40.0%
! AGGGAAGGACAAAGTTTTCA+TGG + chr2_1:63237225-63237244 Msa0217010:CDS 40.0%
!! TGTGGGAAATTTCAGGTTCT+TGG - chr2_1:63237293-63237312 None:intergenic 40.0%
CACCAATTGTGGGAAATTTC+AGG - chr2_1:63237300-63237319 None:intergenic 40.0%
TCTCTCACTGTTTCAGCTTA+TGG + chr2_1:63237340-63237359 Msa0217010:CDS 40.0%
GCACCAAAAAAACCACTAAG+AGG + chr2_1:63235552-63235571 Msa0217010:CDS 40.0%
TTGAACAGTTAGAGAAGCAG+AGG + chr2_1:63235583-63235602 Msa0217010:CDS 40.0%
! GTTGTTGATGAGGATGATCA+AGG - chr2_1:63235653-63235672 None:intergenic 40.0%
! TATGGTGCATTTTCACCAAC+TGG + chr2_1:63235693-63235712 Msa0217010:CDS 40.0%
! ATGGTGCATTTTCACCAACT+GGG + chr2_1:63235694-63235713 Msa0217010:CDS 40.0%
!!! AACACTGTTTTGGTTGGTTC+TGG + chr2_1:63235786-63235805 Msa0217010:CDS 40.0%
TTTGAGCAAGCTCCAACAAA+AGG - chr2_1:63235819-63235838 None:intergenic 40.0%
AATAACAACAGGGTCGTTGT+TGG + chr2_1:63235879-63235898 Msa0217010:CDS 40.0%
GGTAACTATGGATATGGATC+TGG + chr2_1:63235906-63235925 Msa0217010:CDS 40.0%
! GCTCTTTAGAAGGCTCAAAA+GGG - chr2_1:63235956-63235975 None:intergenic 40.0%
! AGCTCTTTAGAAGGCTCAAA+AGG - chr2_1:63235957-63235976 None:intergenic 40.0%
GGTTGAGAGTGATGAAGATT+TGG - chr2_1:63235990-63236009 None:intergenic 40.0%
! ACCTTTTGATCTTTGCCTCA+AGG + chr2_1:63236007-63236026 Msa0217010:CDS 40.0%
ACCTTGAGGCAAAGATCAAA+AGG - chr2_1:63236011-63236030 None:intergenic 40.0%
GAGGAGAGTAATGTAATGAG+AGG + chr2_1:63236725-63236744 Msa0217010:CDS 40.0%
GGATAAGCAGAAAGAACAGA+AGG - chr2_1:63236836-63236855 None:intergenic 40.0%
TCATCAAGATTGTGCTGAGT+TGG - chr2_1:63236857-63236876 None:intergenic 40.0%
AACTCAGCACAATCTTGATG+AGG + chr2_1:63236856-63236875 Msa0217010:CDS 40.0%
TTGTGTTGTAAAGTGTGTGG+AGG + chr2_1:63237165-63237184 Msa0217010:intron 40.0%
! AGGGAAGGACAAAGTTTTCA+TGG + chr2_1:63237225-63237244 Msa0217010:CDS 40.0%
!! TGTGGGAAATTTCAGGTTCT+TGG - chr2_1:63237293-63237312 None:intergenic 40.0%
CACCAATTGTGGGAAATTTC+AGG - chr2_1:63237300-63237319 None:intergenic 40.0%
TCTCTCACTGTTTCAGCTTA+TGG + chr2_1:63237340-63237359 Msa0217010:CDS 40.0%
TCAACTCCTACACCTCTTAG+TGG - chr2_1:63235567-63235586 None:intergenic 45.0%
GTTAGAGAAGCAGAGGATAG+AGG + chr2_1:63235590-63235609 Msa0217010:CDS 45.0%
TTGGTGAGAAAAGCTGAAGC+TGG + chr2_1:63235615-63235634 Msa0217010:CDS 45.0%
!! GTTGTTGGTGGTGGTAACTA+TGG + chr2_1:63235894-63235913 Msa0217010:CDS 45.0%
! GGTGGTGGTAACTATGGATA+TGG + chr2_1:63235900-63235919 Msa0217010:CDS 45.0%
AGAACAGAAGGTTGAGGTTG+AGG - chr2_1:63236824-63236843 None:intergenic 45.0%
GCAGAAAGAACAGAAGGTTG+AGG - chr2_1:63236830-63236849 None:intergenic 45.0%
AAGTTCTTCATCAGGAGGGA+AGG + chr2_1:63237210-63237229 Msa0217010:CDS 45.0%
GAAGCAGCTTCACCAATTGT+GGG - chr2_1:63237310-63237329 None:intergenic 45.0%
AGAAGCAGCTTCACCAATTG+TGG - chr2_1:63237311-63237330 None:intergenic 45.0%
CTCACTGTTTCAGCTTATGG+AGG + chr2_1:63237343-63237362 Msa0217010:CDS 45.0%
TCAACTCCTACACCTCTTAG+TGG - chr2_1:63235567-63235586 None:intergenic 45.0%
GTTAGAGAAGCAGAGGATAG+AGG + chr2_1:63235590-63235609 Msa0217010:CDS 45.0%
TTGGTGAGAAAAGCTGAAGC+TGG + chr2_1:63235615-63235634 Msa0217010:CDS 45.0%
!! GTTGTTGGTGGTGGTAACTA+TGG + chr2_1:63235894-63235913 Msa0217010:CDS 45.0%
! GGTGGTGGTAACTATGGATA+TGG + chr2_1:63235900-63235919 Msa0217010:CDS 45.0%
AGAACAGAAGGTTGAGGTTG+AGG - chr2_1:63236824-63236843 None:intergenic 45.0%
GCAGAAAGAACAGAAGGTTG+AGG - chr2_1:63236830-63236849 None:intergenic 45.0%
AAGTTCTTCATCAGGAGGGA+AGG + chr2_1:63237210-63237229 Msa0217010:CDS 45.0%
GAAGCAGCTTCACCAATTGT+GGG - chr2_1:63237310-63237329 None:intergenic 45.0%
AGAAGCAGCTTCACCAATTG+TGG - chr2_1:63237311-63237330 None:intergenic 45.0%
CTCACTGTTTCAGCTTATGG+AGG + chr2_1:63237343-63237362 Msa0217010:CDS 45.0%
!! TTAAATTAAATAATTAGATA+TGG - chr2_1:63237024-63237043 None:intergenic 5.0%
!!! TTTAATTTAATTTAATTTGA+TGG + chr2_1:63237124-63237143 Msa0217010:intron 5.0%
!! TTAAATTAAATAATTAGATA+TGG - chr2_1:63237024-63237043 None:intergenic 5.0%
!!! TTTAATTTAATTTAATTTGA+TGG + chr2_1:63237124-63237143 Msa0217010:intron 5.0%
!! TGCTTGGTTTTCAGAGGCAG+AGG - chr2_1:63235505-63235524 None:intergenic 50.0%
! GAAGCAGAGGATAGAGGCAT+TGG + chr2_1:63235596-63235615 Msa0217010:CDS 50.0%
GGAAACTGAAATGGCCCAGT+TGG - chr2_1:63235711-63235730 None:intergenic 50.0%
! GTTGGAGCTTGCTCAAACGT+TGG + chr2_1:63235822-63235841 Msa0217010:CDS 50.0%
AACAACAGGGTCGTTGTTGG+TGG + chr2_1:63235882-63235901 Msa0217010:CDS 50.0%
GAGAGGAGCTAGAAACCCTT+TGG + chr2_1:63236742-63236761 Msa0217010:CDS 50.0%
AGGAGCTAGAAACCCTTTGG+AGG + chr2_1:63236745-63236764 Msa0217010:CDS 50.0%
! CTAGAAACCCTTTGGAGGCA+TGG + chr2_1:63236750-63236769 Msa0217010:CDS 50.0%
GATTAGGCCATGCCTCCAAA+GGG - chr2_1:63236760-63236779 None:intergenic 50.0%
TGATTAGGCCATGCCTCCAA+AGG - chr2_1:63236761-63236780 None:intergenic 50.0%
GAAGGTTGAGGTTGAGGTTG+AGG - chr2_1:63236818-63236837 None:intergenic 50.0%
TGGAGGTTGTTGCTGTGCAT+AGG + chr2_1:63237182-63237201 Msa0217010:CDS 50.0%
AGGTTGTTGCTGTGCATAGG+AGG + chr2_1:63237185-63237204 Msa0217010:CDS 50.0%
GGTTGTTGCTGTGCATAGGA+GGG + chr2_1:63237186-63237205 Msa0217010:CDS 50.0%
GTTGTTGCTGTGCATAGGAG+GGG + chr2_1:63237187-63237206 Msa0217010:CDS 50.0%
AGGAGGGGAAGTTCTTCATC+AGG + chr2_1:63237202-63237221 Msa0217010:CDS 50.0%
AGGGGAAGTTCTTCATCAGG+AGG + chr2_1:63237205-63237224 Msa0217010:CDS 50.0%
GGGGAAGTTCTTCATCAGGA+GGG + chr2_1:63237206-63237225 Msa0217010:CDS 50.0%
!! TGCTTGGTTTTCAGAGGCAG+AGG - chr2_1:63235505-63235524 None:intergenic 50.0%
! GAAGCAGAGGATAGAGGCAT+TGG + chr2_1:63235596-63235615 Msa0217010:CDS 50.0%
GGAAACTGAAATGGCCCAGT+TGG - chr2_1:63235711-63235730 None:intergenic 50.0%
! GTTGGAGCTTGCTCAAACGT+TGG + chr2_1:63235822-63235841 Msa0217010:CDS 50.0%
AACAACAGGGTCGTTGTTGG+TGG + chr2_1:63235882-63235901 Msa0217010:CDS 50.0%
GAGAGGAGCTAGAAACCCTT+TGG + chr2_1:63236742-63236761 Msa0217010:CDS 50.0%
AGGAGCTAGAAACCCTTTGG+AGG + chr2_1:63236745-63236764 Msa0217010:CDS 50.0%
! CTAGAAACCCTTTGGAGGCA+TGG + chr2_1:63236750-63236769 Msa0217010:CDS 50.0%
GATTAGGCCATGCCTCCAAA+GGG - chr2_1:63236760-63236779 None:intergenic 50.0%
TGATTAGGCCATGCCTCCAA+AGG - chr2_1:63236761-63236780 None:intergenic 50.0%
GAAGGTTGAGGTTGAGGTTG+AGG - chr2_1:63236818-63236837 None:intergenic 50.0%
TGGAGGTTGTTGCTGTGCAT+AGG + chr2_1:63237182-63237201 Msa0217010:CDS 50.0%
AGGTTGTTGCTGTGCATAGG+AGG + chr2_1:63237185-63237204 Msa0217010:CDS 50.0%
GGTTGTTGCTGTGCATAGGA+GGG + chr2_1:63237186-63237205 Msa0217010:CDS 50.0%
GTTGTTGCTGTGCATAGGAG+GGG + chr2_1:63237187-63237206 Msa0217010:CDS 50.0%
AGGAGGGGAAGTTCTTCATC+AGG + chr2_1:63237202-63237221 Msa0217010:CDS 50.0%
AGGGGAAGTTCTTCATCAGG+AGG + chr2_1:63237205-63237224 Msa0217010:CDS 50.0%
GGGGAAGTTCTTCATCAGGA+GGG + chr2_1:63237206-63237225 Msa0217010:CDS 50.0%
GCTTGCTCAAACGTTGGTGC+TGG + chr2_1:63235828-63235847 Msa0217010:CDS 55.0%
!! GCTCAAACGTTGGTGCTGGA+TGG + chr2_1:63235832-63235851 Msa0217010:CDS 55.0%
! AACAGGGTCGTTGTTGGTGG+TGG + chr2_1:63235885-63235904 Msa0217010:CDS 55.0%
GCTTGCTCAAACGTTGGTGC+TGG + chr2_1:63235828-63235847 Msa0217010:CDS 55.0%
!! GCTCAAACGTTGGTGCTGGA+TGG + chr2_1:63235832-63235851 Msa0217010:CDS 55.0%
! AACAGGGTCGTTGTTGGTGG+TGG + chr2_1:63235885-63235904 Msa0217010:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 63235498 63237417 63235498 ID=Msa0217010;Name=Msa0217010
chr2_1 mRNA 63235498 63237417 63235498 ID=Msa0217010-mRNA-1;Parent=Msa0217010;Name=Msa0217010-mRNA-1;_AED=0.00;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|312
chr2_1 exon 63235498 63236028 63235498 ID=Msa0217010-mRNA-1:exon:17611;Parent=Msa0217010-mRNA-1
chr2_1 exon 63236710 63236877 63236710 ID=Msa0217010-mRNA-1:exon:17612;Parent=Msa0217010-mRNA-1
chr2_1 exon 63237178 63237417 63237178 ID=Msa0217010-mRNA-1:exon:17613;Parent=Msa0217010-mRNA-1
chr2_1 CDS 63235498 63236028 63235498 ID=Msa0217010-mRNA-1:cds;Parent=Msa0217010-mRNA-1
chr2_1 CDS 63236710 63236877 63236710 ID=Msa0217010-mRNA-1:cds;Parent=Msa0217010-mRNA-1
chr2_1 CDS 63237178 63237417 63237178 ID=Msa0217010-mRNA-1:cds;Parent=Msa0217010-mRNA-1
Gene Sequence

>Msa0217010

ATGGCCTCTGCCTCTGAAAACCAAGCAAAAAACAAAGGGAGAAAAAATGGTAAAGCACCAAAAAAACCACTAAGAGGTGTAGGAGTTGAACAGTTAGAGAAGCAGAGGATAGAGGCATTGGTGAGAAAAGCTGAAGCTGGTACATTACTTCACCTTGATCATCCTCATCAACAACAACAACAACAGCTTTTGAAGTATGGTGCATTTTCACCAACTGGGCCATTTCAGTTTCCTCAACATCATCAACAGCAAATGATGATGAATGAAAACACCAACAACAATAACAATAACACTGTTTTGGTTGGTTCTGGTTATGTTCCTTTTGTTGGAGCTTGCTCAAACGTTGGTGCTGGATGGATTGTTCCTAACAATCAGAATCAGAATAACAACAGGGTCGTTGTTGGTGGTGGTAACTATGGATATGGATCTGGTTCACTACTTTGTAGTAGTAGAAACCCTTTTGAGCCTTCTAAAGAGCTCTCTTCAATGCCAAATCTTCATCACTCTCAACCTTTTGATCTTTGCCTCAAGAAAACACGTTTGAATGAGGAGAGTAATGTAATGAGAGGAGCTAGAAACCCTTTGGAGGCATGGCCTAATCATCATCATGTTCATGATTTTCTTGGAGGATATGTGCCTCAACCTCAACCTCAACCTTCTGTTCTTTCTGCTTATCCAACTCAGCACAATCTTGATGAGTGTGTGGAGGTTGTTGCTGTGCATAGGAGGGGAAGTTCTTCATCAGGAGGGAAGGACAAAGTTTTCATGGAGTATGATTTTTTTCATGAAAAAGATGGAAGAGACACTTCTTCCAAGAACCTGAAATTTCCCACAATTGGTGAAGCTGCTTCTTCTTCTTTATCTCTCACTGTTTCAGCTTATGGAGGAGATACTGCTACTACTGATCTTAGTTCTATTGATTTGTCTCTTAAGCTTTGA

Protein sequence

>Msa0217010

MASASENQAKNKGRKNGKAPKKPLRGVGVEQLEKQRIEALVRKAEAGTLLHLDHPHQQQQQQLLKYGAFSPTGPFQFPQHHQQQMMMNENTNNNNNNTVLVGSGYVPFVGACSNVGAGWIVPNNQNQNNNRVVVGGGNYGYGSGSLLCSSRNPFEPSKELSSMPNLHHSQPFDLCLKKTRLNEESNVMRGARNPLEAWPNHHHVHDFLGGYVPQPQPQPSVLSAYPTQHNLDECVEVVAVHRRGSSSSGGKDKVFMEYDFFHEKDGRDTSSKNLKFPTIGEAASSSLSLTVSAYGGDTATTDLSSIDLSLKL*