Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0218380 | RHN75377.1 | 91.561 | 237 | 14 | 1 | 1 | 237 | 2 | 232 | 2.37e-143 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0218380 | sp|Q1G3Q4|RITF1_ARATH | 38.571 | 140 | 75 | 5 | 7 | 146 | 8 | 136 | 4.12e-20 | 89.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0218380 | A0A396JJY5 | 91.561 | 237 | 14 | 1 | 1 | 237 | 2 | 232 | 1.13e-143 | 410 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0218380 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0218380 | MtrunA17_Chr2g0320521 | 91.561 | 237 | 14 | 1 | 1 | 237 | 2 | 232 | 2.18e-147 | 410 |
| Msa0218380 | MtrunA17_Chr2g0320561 | 59.184 | 245 | 89 | 3 | 2 | 237 | 1 | 243 | 3.91e-88 | 260 |
| Msa0218380 | MtrunA17_Chr4g0020811 | 70.714 | 140 | 41 | 0 | 1 | 140 | 2 | 141 | 6.95e-68 | 206 |
| Msa0218380 | MtrunA17_Chr2g0308401 | 69.784 | 139 | 42 | 0 | 2 | 140 | 1 | 139 | 3.46e-66 | 202 |
| Msa0218380 | MtrunA17_Chr2g0320551 | 61.151 | 139 | 54 | 0 | 2 | 140 | 1 | 139 | 1.93e-57 | 180 |
| Msa0218380 | MtrunA17_Chr1g0179781 | 37.449 | 243 | 102 | 7 | 1 | 236 | 2 | 201 | 6.30e-45 | 149 |
| Msa0218380 | MtrunA17_Chr7g0265291 | 37.395 | 238 | 107 | 8 | 2 | 236 | 4 | 202 | 4.27e-40 | 137 |
| Msa0218380 | MtrunA17_Chr5g0411151 | 46.099 | 141 | 66 | 3 | 1 | 141 | 31 | 161 | 2.05e-39 | 136 |
| Msa0218380 | MtrunA17_Chr5g0395181 | 34.615 | 234 | 108 | 5 | 1 | 234 | 17 | 205 | 4.36e-38 | 132 |
| Msa0218380 | MtrunA17_Chr4g0040071 | 44.928 | 138 | 66 | 3 | 4 | 141 | 14 | 141 | 6.57e-36 | 126 |
| Msa0218380 | MtrunA17_Chr8g0366581 | 44.203 | 138 | 67 | 3 | 4 | 141 | 32 | 159 | 4.41e-35 | 125 |
| Msa0218380 | MtrunA17_Chr2g0297251 | 32.189 | 233 | 137 | 8 | 7 | 234 | 39 | 255 | 1.23e-27 | 106 |
| Msa0218380 | MtrunA17_Chr7g0230511 | 31.048 | 248 | 141 | 10 | 7 | 236 | 11 | 246 | 1.43e-25 | 100 |
| Msa0218380 | MtrunA17_Chr4g0065041 | 38.571 | 140 | 75 | 5 | 7 | 146 | 10 | 138 | 6.04e-20 | 85.5 |
| Msa0218380 | MtrunA17_Chr8g0392151 | 33.684 | 95 | 59 | 3 | 7 | 101 | 15 | 105 | 9.27e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0218380 | AT1G43000.2 | 36.667 | 240 | 120 | 7 | 1 | 236 | 12 | 223 | 1.76e-44 | 149 |
| Msa0218380 | AT1G43000.1 | 36.667 | 240 | 120 | 7 | 1 | 236 | 5 | 216 | 2.04e-44 | 149 |
| Msa0218380 | AT1G21000.2 | 33.740 | 246 | 142 | 8 | 1 | 236 | 9 | 243 | 6.28e-38 | 132 |
| Msa0218380 | AT1G21000.1 | 33.740 | 246 | 142 | 8 | 1 | 236 | 12 | 246 | 8.40e-38 | 132 |
| Msa0218380 | AT4G17900.1 | 48.201 | 139 | 61 | 4 | 4 | 141 | 33 | 161 | 6.57e-37 | 129 |
| Msa0218380 | AT1G32700.1 | 47.143 | 140 | 64 | 3 | 7 | 146 | 14 | 143 | 1.37e-36 | 128 |
| Msa0218380 | AT4G17900.2 | 48.201 | 139 | 61 | 4 | 4 | 141 | 19 | 147 | 2.19e-36 | 128 |
| Msa0218380 | AT1G76590.1 | 34.310 | 239 | 137 | 7 | 6 | 236 | 19 | 245 | 2.56e-36 | 129 |
| Msa0218380 | AT2G27930.1 | 45.324 | 139 | 70 | 3 | 7 | 142 | 6 | 141 | 1.12e-33 | 120 |
| Msa0218380 | AT2G27930.4 | 45.324 | 139 | 70 | 3 | 7 | 142 | 6 | 141 | 1.12e-33 | 120 |
| Msa0218380 | AT2G27930.3 | 45.255 | 137 | 69 | 3 | 7 | 140 | 6 | 139 | 1.10e-32 | 117 |
| Msa0218380 | AT2G27930.2 | 45.255 | 137 | 69 | 3 | 7 | 140 | 6 | 139 | 1.10e-32 | 117 |
| Msa0218380 | AT1G32700.2 | 47.788 | 113 | 50 | 2 | 34 | 146 | 1 | 104 | 3.41e-29 | 108 |
| Msa0218380 | AT5G46710.3 | 33.621 | 232 | 116 | 8 | 7 | 236 | 14 | 209 | 9.05e-28 | 105 |
| Msa0218380 | AT5G46710.1 | 33.621 | 232 | 116 | 8 | 7 | 236 | 30 | 225 | 2.26e-27 | 105 |
| Msa0218380 | AT5G46710.2 | 42.963 | 135 | 66 | 4 | 7 | 140 | 30 | 154 | 1.21e-26 | 101 |
| Msa0218380 | AT1G31040.1 | 29.362 | 235 | 148 | 8 | 7 | 236 | 21 | 242 | 2.33e-23 | 94.7 |
| Msa0218380 | AT3G60670.1 | 37.681 | 138 | 75 | 4 | 4 | 141 | 6 | 132 | 3.55e-22 | 91.7 |
| Msa0218380 | AT2G12646.1 | 38.571 | 140 | 75 | 5 | 7 | 146 | 8 | 136 | 4.19e-21 | 89.4 |
| Msa0218380 | AT2G12646.2 | 38.571 | 140 | 75 | 5 | 7 | 146 | 8 | 136 | 4.19e-21 | 89.4 |
| Msa0218380 | AT2G12646.3 | 38.571 | 140 | 75 | 5 | 7 | 146 | 5 | 133 | 4.60e-21 | 89.0 |
| Msa0218380 | AT2G27930.5 | 44.186 | 86 | 43 | 2 | 60 | 142 | 61 | 144 | 6.53e-16 | 73.9 |
| Msa0218380 | AT2G27930.6 | 44.186 | 86 | 43 | 2 | 60 | 142 | 61 | 144 | 6.53e-16 | 73.9 |
| Msa0218380 | AT2G01818.1 | 28.205 | 234 | 141 | 8 | 7 | 237 | 13 | 222 | 7.40e-15 | 71.6 |
Find 36 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCCTTTCTTCTTGAATT+TGG | 0.126179 | 2_1:+65491898 | None:intergenic |
| TTTATGCAAGATCCACAAAA+TGG | 0.291003 | 2_1:+65492904 | None:intergenic |
| AATCGAAATTTACAAGCATT+TGG | 0.312437 | 2_1:-65492642 | Msa0218380:CDS |
| TTCTTCGTAGGTTGGGAATA+AGG | 0.331085 | 2_1:+65492557 | None:intergenic |
| TACAAGCATTTGGATATTCT+AGG | 0.347196 | 2_1:-65492632 | Msa0218380:CDS |
| AAGAAGACGATAGGTATAAT+TGG | 0.364201 | 2_1:-65492539 | Msa0218380:CDS |
| TGCAAAGGAGACAGAAGAAA+TGG | 0.410636 | 2_1:-65492106 | Msa0218380:CDS |
| AGAAGAAATGGAAAGATTGT+TGG | 0.417250 | 2_1:-65492094 | Msa0218380:CDS |
| TATCGTCTTCTTCGTAGGTT+GGG | 0.419261 | 2_1:+65492550 | None:intergenic |
| GCCAGAGAGCAAAAGTAATA+AGG | 0.422528 | 2_1:+65492467 | None:intergenic |
| CTTCTGTCTCCTTTGCACTT+AGG | 0.432332 | 2_1:+65492112 | None:intergenic |
| AAAGCCAAATTCAAGAAGAA+AGG | 0.446839 | 2_1:-65491902 | Msa0218380:CDS |
| CTATCGTCTTCTTCGTAGGT+TGG | 0.485528 | 2_1:+65492549 | None:intergenic |
| ATATGTCAAAGGAATCTTGT+AGG | 0.494888 | 2_1:-65492491 | Msa0218380:CDS |
| AAGCCAAATTCAAGAAGAAA+GGG | 0.497702 | 2_1:-65491901 | Msa0218380:CDS |
| TGTAAAGTTGCTAATCACAT+AGG | 0.511697 | 2_1:+65492601 | None:intergenic |
| AGGATATGATGTTCGTGCCC+TGG | 0.529076 | 2_1:-65493032 | Msa0218380:CDS |
| TTTGAATGCATAAAGAAGGA+TGG | 0.531033 | 2_1:-65492144 | Msa0218380:CDS |
| AGTTGCTAATCACATAGGGT+TGG | 0.534638 | 2_1:+65492606 | None:intergenic |
| AGAAATGGAAAGATTGTTGG+AGG | 0.534953 | 2_1:-65492091 | Msa0218380:CDS |
| CAAGTTTGAATGCATAAAGA+AGG | 0.541080 | 2_1:-65492148 | Msa0218380:intron |
| AAGAAAGGGAATACCTCGTA+GGG | 0.545800 | 2_1:-65491887 | Msa0218380:CDS |
| AACTTCACATGATGTGAAGA+AGG | 0.546693 | 2_1:+65492984 | None:intergenic |
| TTGAATGCATAAAGAAGGAT+GGG | 0.549402 | 2_1:-65492143 | Msa0218380:CDS |
| ATTGTTGGAGGAATCAATCA+AGG | 0.555066 | 2_1:-65492079 | Msa0218380:CDS |
| GTAAAGTTGCTAATCACATA+GGG | 0.555270 | 2_1:+65492602 | None:intergenic |
| ATACCTATCGTCTTCTTCGT+AGG | 0.556131 | 2_1:+65492545 | None:intergenic |
| AAACGAAAAGTAAATGAAGC+GGG | 0.558672 | 2_1:-65492015 | Msa0218380:CDS |
| CAGTTGTATTCATAAACAAG+AGG | 0.585618 | 2_1:-65492580 | Msa0218380:CDS |
| CAACAATGAAGAAAACGAAG+AGG | 0.607229 | 2_1:-65491989 | Msa0218380:CDS |
| AAAACGAAAAGTAAATGAAG+CGG | 0.609354 | 2_1:-65492016 | Msa0218380:CDS |
| GAAGAAAGGGAATACCTCGT+AGG | 0.613671 | 2_1:-65491888 | Msa0218380:CDS |
| CAACCTACGAAGAAGACGAT+AGG | 0.637898 | 2_1:-65492548 | Msa0218380:CDS |
| ATCTTTGTAAGATATGTCAA+AGG | 0.646257 | 2_1:-65492502 | Msa0218380:CDS |
| TGAATGCATAAAGAAGGATG+GGG | 0.648201 | 2_1:-65492142 | Msa0218380:CDS |
| GAATGCATAAAGAAGGATGG+GGG | 0.698646 | 2_1:-65492141 | Msa0218380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAATTAAAGAAAAG+TGG | + | chr2_1:65492126-65492145 | None:intergenic | 10.0% |
| !! | ACAAAATAAATTAAAAAAAG+AGG | + | chr2_1:65492528-65492547 | None:intergenic | 10.0% |
| !! | AAAAATTAATTAAAGAAAAG+TGG | + | chr2_1:65492126-65492145 | None:intergenic | 10.0% |
| !! | ACAAAATAAATTAAAAAAAG+AGG | + | chr2_1:65492528-65492547 | None:intergenic | 10.0% |
| !!! | TTGTATAATTTTTTTGACTT+TGG | - | chr2_1:65492163-65492182 | Msa0218380:intron | 15.0% |
| !!! | TGTATAATTTTTTTGACTTT+GGG | - | chr2_1:65492164-65492183 | Msa0218380:intron | 15.0% |
| !!! | TTGTATAATTTTTTTGACTT+TGG | - | chr2_1:65492163-65492182 | Msa0218380:intron | 15.0% |
| !!! | TGTATAATTTTTTTGACTTT+GGG | - | chr2_1:65492164-65492183 | Msa0218380:intron | 15.0% |
| !! | AAAAAGAGGATCTATAAAAA+AGG | + | chr2_1:65492514-65492533 | None:intergenic | 20.0% |
| !!! | CAATCGCTTAATTTTTTTAT+TGG | - | chr2_1:65492623-65492642 | Msa0218380:CDS | 20.0% |
| !!! | TTTTTTATTGGTGTAAAGAA+TGG | - | chr2_1:65492635-65492654 | Msa0218380:CDS | 20.0% |
| !!! | TTTTTATTGGTGTAAAGAAT+GGG | - | chr2_1:65492636-65492655 | Msa0218380:CDS | 20.0% |
| !! | AAAAAGAGGATCTATAAAAA+AGG | + | chr2_1:65492514-65492533 | None:intergenic | 20.0% |
| !!! | CAATCGCTTAATTTTTTTAT+TGG | - | chr2_1:65492623-65492642 | Msa0218380:CDS | 20.0% |
| !!! | TTTTTTATTGGTGTAAAGAA+TGG | - | chr2_1:65492635-65492654 | Msa0218380:CDS | 20.0% |
| !!! | TTTTTATTGGTGTAAAGAAT+GGG | - | chr2_1:65492636-65492655 | Msa0218380:CDS | 20.0% |
| ! | TATACTTGCAATTACAAATC+AGG | - | chr2_1:65492204-65492223 | Msa0218380:intron | 25.0% |
| ! | AATCGAAATTTACAAGCATT+TGG | - | chr2_1:65492261-65492280 | Msa0218380:intron | 25.0% |
| ! | ATCTTTGTAAGATATGTCAA+AGG | - | chr2_1:65492401-65492420 | Msa0218380:intron | 25.0% |
| ! | ATAAAAAAGGAGACATGATA+AGG | + | chr2_1:65492501-65492520 | None:intergenic | 25.0% |
| !!! | GATTTTTTGGCTTTTTGTTT+TGG | + | chr2_1:65492852-65492871 | None:intergenic | 25.0% |
| ! | AAAACGAAAAGTAAATGAAG+CGG | - | chr2_1:65492887-65492906 | Msa0218380:CDS | 25.0% |
| ! | TATACTTGCAATTACAAATC+AGG | - | chr2_1:65492204-65492223 | Msa0218380:intron | 25.0% |
| ! | AATCGAAATTTACAAGCATT+TGG | - | chr2_1:65492261-65492280 | Msa0218380:intron | 25.0% |
| ! | ATCTTTGTAAGATATGTCAA+AGG | - | chr2_1:65492401-65492420 | Msa0218380:intron | 25.0% |
| ! | ATAAAAAAGGAGACATGATA+AGG | + | chr2_1:65492501-65492520 | None:intergenic | 25.0% |
| !!! | GATTTTTTGGCTTTTTGTTT+TGG | + | chr2_1:65492852-65492871 | None:intergenic | 25.0% |
| ! | AAAACGAAAAGTAAATGAAG+CGG | - | chr2_1:65492887-65492906 | Msa0218380:CDS | 25.0% |
| ! | CAAAAATTTGCTTGCAATCA+CGG | - | chr2_1:65491896-65491915 | Msa0218380:CDS | 30.0% |
| TTTATGCAAGATCCACAAAA+TGG | + | chr2_1:65492002-65492021 | None:intergenic | 30.0% | |
| TACAAGCATTTGGATATTCT+AGG | - | chr2_1:65492271-65492290 | Msa0218380:intron | 30.0% | |
| GTAAAGTTGCTAATCACATA+GGG | + | chr2_1:65492304-65492323 | None:intergenic | 30.0% | |
| TGTAAAGTTGCTAATCACAT+AGG | + | chr2_1:65492305-65492324 | None:intergenic | 30.0% | |
| CAGTTGTATTCATAAACAAG+AGG | - | chr2_1:65492323-65492342 | Msa0218380:intron | 30.0% | |
| AAGAAGACGATAGGTATAAT+TGG | - | chr2_1:65492364-65492383 | Msa0218380:intron | 30.0% | |
| ATATGTCAAAGGAATCTTGT+AGG | - | chr2_1:65492412-65492431 | Msa0218380:intron | 30.0% | |
| CAAGTTTGAATGCATAAAGA+AGG | - | chr2_1:65492755-65492774 | Msa0218380:intron | 30.0% | |
| TTTGAATGCATAAAGAAGGA+TGG | - | chr2_1:65492759-65492778 | Msa0218380:intron | 30.0% | |
| TTGAATGCATAAAGAAGGAT+GGG | - | chr2_1:65492760-65492779 | Msa0218380:intron | 30.0% | |
| AGAAGAAATGGAAAGATTGT+TGG | - | chr2_1:65492809-65492828 | Msa0218380:intron | 30.0% | |
| ! | ATTTTGTTCACGCGATTTTT+TGG | + | chr2_1:65492865-65492884 | None:intergenic | 30.0% |
| AAACGAAAAGTAAATGAAGC+GGG | - | chr2_1:65492888-65492907 | Msa0218380:CDS | 30.0% | |
| !!! | CTTGAATTTGGCTTTTTGAT+AGG | + | chr2_1:65492996-65493015 | None:intergenic | 30.0% |
| AAAGCCAAATTCAAGAAGAA+AGG | - | chr2_1:65493001-65493020 | Msa0218380:CDS | 30.0% | |
| AAGCCAAATTCAAGAAGAAA+GGG | - | chr2_1:65493002-65493021 | Msa0218380:CDS | 30.0% | |
| ATTCCCTTTCTTCTTGAATT+TGG | + | chr2_1:65493008-65493027 | None:intergenic | 30.0% | |
| ! | CAAAAATTTGCTTGCAATCA+CGG | - | chr2_1:65491896-65491915 | Msa0218380:CDS | 30.0% |
| TTTATGCAAGATCCACAAAA+TGG | + | chr2_1:65492002-65492021 | None:intergenic | 30.0% | |
| TACAAGCATTTGGATATTCT+AGG | - | chr2_1:65492271-65492290 | Msa0218380:intron | 30.0% | |
| GTAAAGTTGCTAATCACATA+GGG | + | chr2_1:65492304-65492323 | None:intergenic | 30.0% | |
| TGTAAAGTTGCTAATCACAT+AGG | + | chr2_1:65492305-65492324 | None:intergenic | 30.0% | |
| CAGTTGTATTCATAAACAAG+AGG | - | chr2_1:65492323-65492342 | Msa0218380:intron | 30.0% | |
| AAGAAGACGATAGGTATAAT+TGG | - | chr2_1:65492364-65492383 | Msa0218380:intron | 30.0% | |
| ATATGTCAAAGGAATCTTGT+AGG | - | chr2_1:65492412-65492431 | Msa0218380:intron | 30.0% | |
| CAAGTTTGAATGCATAAAGA+AGG | - | chr2_1:65492755-65492774 | Msa0218380:intron | 30.0% | |
| TTTGAATGCATAAAGAAGGA+TGG | - | chr2_1:65492759-65492778 | Msa0218380:intron | 30.0% | |
| TTGAATGCATAAAGAAGGAT+GGG | - | chr2_1:65492760-65492779 | Msa0218380:intron | 30.0% | |
| AGAAGAAATGGAAAGATTGT+TGG | - | chr2_1:65492809-65492828 | Msa0218380:intron | 30.0% | |
| ! | ATTTTGTTCACGCGATTTTT+TGG | + | chr2_1:65492865-65492884 | None:intergenic | 30.0% |
| AAACGAAAAGTAAATGAAGC+GGG | - | chr2_1:65492888-65492907 | Msa0218380:CDS | 30.0% | |
| !!! | CTTGAATTTGGCTTTTTGAT+AGG | + | chr2_1:65492996-65493015 | None:intergenic | 30.0% |
| AAAGCCAAATTCAAGAAGAA+AGG | - | chr2_1:65493001-65493020 | Msa0218380:CDS | 30.0% | |
| AAGCCAAATTCAAGAAGAAA+GGG | - | chr2_1:65493002-65493021 | Msa0218380:CDS | 30.0% | |
| ATTCCCTTTCTTCTTGAATT+TGG | + | chr2_1:65493008-65493027 | None:intergenic | 30.0% | |
| AACTTCACATGATGTGAAGA+AGG | + | chr2_1:65491922-65491941 | None:intergenic | 35.0% | |
| ! | TGCAATGACAATCCATTTTG+TGG | - | chr2_1:65491987-65492006 | Msa0218380:CDS | 35.0% |
| ! | CACTTTAAAGAACACTCACT+TGG | + | chr2_1:65492052-65492071 | None:intergenic | 35.0% |
| TTGCAATTACAAATCAGGTG+AGG | - | chr2_1:65492209-65492228 | Msa0218380:intron | 35.0% | |
| !! | ACCTTATTACTTTTGCTCTC+TGG | - | chr2_1:65492435-65492454 | Msa0218380:intron | 35.0% |
| TGAATGCATAAAGAAGGATG+GGG | - | chr2_1:65492761-65492780 | Msa0218380:intron | 35.0% | |
| AGAAATGGAAAGATTGTTGG+AGG | - | chr2_1:65492812-65492831 | Msa0218380:intron | 35.0% | |
| ATTGTTGGAGGAATCAATCA+AGG | - | chr2_1:65492824-65492843 | Msa0218380:intron | 35.0% | |
| CAACAATGAAGAAAACGAAG+AGG | - | chr2_1:65492914-65492933 | Msa0218380:CDS | 35.0% | |
| ACGAAGAGGATGAAGAAAAA+AGG | - | chr2_1:65492928-65492947 | Msa0218380:CDS | 35.0% | |
| CGAAGAGGATGAAGAAAAAA+GGG | - | chr2_1:65492929-65492948 | Msa0218380:CDS | 35.0% | |
| AACTTCACATGATGTGAAGA+AGG | + | chr2_1:65491922-65491941 | None:intergenic | 35.0% | |
| ! | TGCAATGACAATCCATTTTG+TGG | - | chr2_1:65491987-65492006 | Msa0218380:CDS | 35.0% |
| ! | CACTTTAAAGAACACTCACT+TGG | + | chr2_1:65492052-65492071 | None:intergenic | 35.0% |
| TTGCAATTACAAATCAGGTG+AGG | - | chr2_1:65492209-65492228 | Msa0218380:intron | 35.0% | |
| !! | ACCTTATTACTTTTGCTCTC+TGG | - | chr2_1:65492435-65492454 | Msa0218380:intron | 35.0% |
| TGAATGCATAAAGAAGGATG+GGG | - | chr2_1:65492761-65492780 | Msa0218380:intron | 35.0% | |
| AGAAATGGAAAGATTGTTGG+AGG | - | chr2_1:65492812-65492831 | Msa0218380:intron | 35.0% | |
| ATTGTTGGAGGAATCAATCA+AGG | - | chr2_1:65492824-65492843 | Msa0218380:intron | 35.0% | |
| CAACAATGAAGAAAACGAAG+AGG | - | chr2_1:65492914-65492933 | Msa0218380:CDS | 35.0% | |
| ACGAAGAGGATGAAGAAAAA+AGG | - | chr2_1:65492928-65492947 | Msa0218380:CDS | 35.0% | |
| CGAAGAGGATGAAGAAAAAA+GGG | - | chr2_1:65492929-65492948 | Msa0218380:CDS | 35.0% | |
| !! | GCAAGCAAATTTTTGAGCCA+GGG | + | chr2_1:65491891-65491910 | None:intergenic | 40.0% |
| !! | TGCAAGCAAATTTTTGAGCC+AGG | + | chr2_1:65491892-65491911 | None:intergenic | 40.0% |
| AGTTGCTAATCACATAGGGT+TGG | + | chr2_1:65492300-65492319 | None:intergenic | 40.0% | |
| ! | TTCTTCGTAGGTTGGGAATA+AGG | + | chr2_1:65492349-65492368 | None:intergenic | 40.0% |
| TATCGTCTTCTTCGTAGGTT+GGG | + | chr2_1:65492356-65492375 | None:intergenic | 40.0% | |
| ATACCTATCGTCTTCTTCGT+AGG | + | chr2_1:65492361-65492380 | None:intergenic | 40.0% | |
| GCCAGAGAGCAAAAGTAATA+AGG | + | chr2_1:65492439-65492458 | None:intergenic | 40.0% | |
| GAATGCATAAAGAAGGATGG+GGG | - | chr2_1:65492762-65492781 | Msa0218380:intron | 40.0% | |
| TGCAAAGGAGACAGAAGAAA+TGG | - | chr2_1:65492797-65492816 | Msa0218380:intron | 40.0% | |
| AGAGGATGAAGAAAAAAGGG+AGG | - | chr2_1:65492932-65492951 | Msa0218380:CDS | 40.0% | |
| AAGAAAGGGAATACCTCGTA+GGG | - | chr2_1:65493016-65493035 | Msa0218380:CDS | 40.0% | |
| TAAAAAAAGGATGCCCTACG+AGG | + | chr2_1:65493032-65493051 | None:intergenic | 40.0% | |
| !! | GCAAGCAAATTTTTGAGCCA+GGG | + | chr2_1:65491891-65491910 | None:intergenic | 40.0% |
| !! | TGCAAGCAAATTTTTGAGCC+AGG | + | chr2_1:65491892-65491911 | None:intergenic | 40.0% |
| AGTTGCTAATCACATAGGGT+TGG | + | chr2_1:65492300-65492319 | None:intergenic | 40.0% | |
| ! | TTCTTCGTAGGTTGGGAATA+AGG | + | chr2_1:65492349-65492368 | None:intergenic | 40.0% |
| TATCGTCTTCTTCGTAGGTT+GGG | + | chr2_1:65492356-65492375 | None:intergenic | 40.0% | |
| ATACCTATCGTCTTCTTCGT+AGG | + | chr2_1:65492361-65492380 | None:intergenic | 40.0% | |
| GCCAGAGAGCAAAAGTAATA+AGG | + | chr2_1:65492439-65492458 | None:intergenic | 40.0% | |
| GAATGCATAAAGAAGGATGG+GGG | - | chr2_1:65492762-65492781 | Msa0218380:intron | 40.0% | |
| TGCAAAGGAGACAGAAGAAA+TGG | - | chr2_1:65492797-65492816 | Msa0218380:intron | 40.0% | |
| AGAGGATGAAGAAAAAAGGG+AGG | - | chr2_1:65492932-65492951 | Msa0218380:CDS | 40.0% | |
| AAGAAAGGGAATACCTCGTA+GGG | - | chr2_1:65493016-65493035 | Msa0218380:CDS | 40.0% | |
| TAAAAAAAGGATGCCCTACG+AGG | + | chr2_1:65493032-65493051 | None:intergenic | 40.0% | |
| CTATCGTCTTCTTCGTAGGT+TGG | + | chr2_1:65492357-65492376 | None:intergenic | 45.0% | |
| CAACCTACGAAGAAGACGAT+AGG | - | chr2_1:65492355-65492374 | Msa0218380:intron | 45.0% | |
| ! | GGGCATTTTCCTAAGTGCAA+AGG | - | chr2_1:65492782-65492801 | Msa0218380:intron | 45.0% |
| CTTCTGTCTCCTTTGCACTT+AGG | + | chr2_1:65492794-65492813 | None:intergenic | 45.0% | |
| GAAGAAAGGGAATACCTCGT+AGG | - | chr2_1:65493015-65493034 | Msa0218380:CDS | 45.0% | |
| CTATCGTCTTCTTCGTAGGT+TGG | + | chr2_1:65492357-65492376 | None:intergenic | 45.0% | |
| CAACCTACGAAGAAGACGAT+AGG | - | chr2_1:65492355-65492374 | Msa0218380:intron | 45.0% | |
| ! | GGGCATTTTCCTAAGTGCAA+AGG | - | chr2_1:65492782-65492801 | Msa0218380:intron | 45.0% |
| CTTCTGTCTCCTTTGCACTT+AGG | + | chr2_1:65492794-65492813 | None:intergenic | 45.0% | |
| GAAGAAAGGGAATACCTCGT+AGG | - | chr2_1:65493015-65493034 | Msa0218380:CDS | 45.0% | |
| !!! | TTATGTTTATTAATTTTTAT+TGG | - | chr2_1:65492595-65492614 | Msa0218380:CDS | 5.0% |
| !!! | TTATGTTTATTAATTTTTAT+TGG | - | chr2_1:65492595-65492614 | Msa0218380:CDS | 5.0% |
| ! | CTTTTGCTCTCTGGCATGCA+AGG | - | chr2_1:65492444-65492463 | Msa0218380:intron | 50.0% |
| ! | CTTTTGCTCTCTGGCATGCA+AGG | - | chr2_1:65492444-65492463 | Msa0218380:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 65491873 | 65493052 | 65491873 | ID=Msa0218380;Name=Msa0218380 |
| chr2_1 | mRNA | 65491873 | 65493052 | 65491873 | ID=Msa0218380-mRNA-1;Parent=Msa0218380;Name=Msa0218380-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|237 |
| chr2_1 | exon | 65492873 | 65493052 | 65492873 | ID=Msa0218380-mRNA-1:exon:18289;Parent=Msa0218380-mRNA-1 |
| chr2_1 | exon | 65492460 | 65492699 | 65492460 | ID=Msa0218380-mRNA-1:exon:18288;Parent=Msa0218380-mRNA-1 |
| chr2_1 | exon | 65491873 | 65492166 | 65491873 | ID=Msa0218380-mRNA-1:exon:18287;Parent=Msa0218380-mRNA-1 |
| chr2_1 | CDS | 65492873 | 65493052 | 65492873 | ID=Msa0218380-mRNA-1:cds;Parent=Msa0218380-mRNA-1 |
| chr2_1 | CDS | 65492460 | 65492699 | 65492460 | ID=Msa0218380-mRNA-1:cds;Parent=Msa0218380-mRNA-1 |
| chr2_1 | CDS | 65491873 | 65492166 | 65491873 | ID=Msa0218380-mRNA-1:cds;Parent=Msa0218380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
