Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219050 | XP_003596811.1 | 82.759 | 290 | 30 | 3 | 1 | 272 | 1 | 288 | 1.80e-166 | 472 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219050 | sp|Q8RYD6|AI5L1_ARATH | 41.958 | 286 | 119 | 10 | 18 | 265 | 43 | 319 | 5.58e-48 | 165 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219050 | G7ITS3 | 82.759 | 290 | 30 | 3 | 1 | 272 | 1 | 288 | 8.59e-167 | 472 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0219050 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219050 | MtrunA17_Chr2g0321411 | 82.759 | 290 | 30 | 3 | 1 | 272 | 1 | 288 | 1.65e-170 | 472 |
| Msa0219050 | MtrunA17_Chr2g0321381 | 63.542 | 288 | 56 | 7 | 1 | 240 | 1 | 287 | 1.67e-108 | 316 |
| Msa0219050 | MtrunA17_Chr3g0080341 | 32.372 | 312 | 118 | 12 | 19 | 257 | 29 | 320 | 2.51e-26 | 105 |
| Msa0219050 | MtrunA17_Chr8g0355121 | 34.444 | 270 | 111 | 13 | 18 | 237 | 32 | 285 | 7.34e-26 | 103 |
| Msa0219050 | MtrunA17_Chr7g0254991 | 32.862 | 283 | 113 | 10 | 19 | 238 | 25 | 293 | 4.04e-24 | 99.0 |
| Msa0219050 | MtrunA17_Chr7g0266211 | 42.222 | 135 | 61 | 3 | 18 | 135 | 47 | 181 | 1.41e-23 | 99.0 |
| Msa0219050 | MtrunA17_Chr7g0266211 | 57.732 | 97 | 38 | 1 | 172 | 265 | 323 | 419 | 1.15e-20 | 90.9 |
| Msa0219050 | MtrunA17_Chr6g0460301 | 30.657 | 274 | 130 | 7 | 19 | 237 | 25 | 293 | 1.08e-17 | 81.3 |
| Msa0219050 | MtrunA17_Chr5g0440841 | 29.778 | 225 | 134 | 5 | 17 | 237 | 37 | 241 | 1.88e-17 | 79.7 |
| Msa0219050 | MtrunA17_Chr3g0133971 | 52.564 | 78 | 30 | 1 | 160 | 237 | 325 | 395 | 3.24e-15 | 75.1 |
| Msa0219050 | MtrunA17_Chr3g0133971 | 37.600 | 125 | 57 | 6 | 18 | 134 | 35 | 146 | 6.98e-14 | 71.2 |
| Msa0219050 | MtrunA17_Chr4g0044771 | 45.098 | 102 | 44 | 3 | 163 | 263 | 281 | 371 | 5.21e-13 | 68.2 |
| Msa0219050 | MtrunA17_Chr4g0051101 | 35.556 | 135 | 63 | 4 | 117 | 251 | 77 | 187 | 1.44e-12 | 65.1 |
| Msa0219050 | MtrunA17_Chr1g0201751 | 28.641 | 206 | 109 | 5 | 68 | 253 | 34 | 221 | 2.96e-11 | 62.0 |
| Msa0219050 | MtrunA17_Chr5g0405951 | 40.909 | 110 | 50 | 2 | 155 | 249 | 127 | 236 | 6.30e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219050 | AT3G44460.1 | 41.958 | 286 | 119 | 10 | 18 | 265 | 43 | 319 | 5.67e-49 | 165 |
| Msa0219050 | AT3G56850.1 | 34.231 | 260 | 117 | 11 | 18 | 237 | 24 | 269 | 7.81e-28 | 108 |
| Msa0219050 | AT2G36270.3 | 56.436 | 101 | 43 | 1 | 151 | 250 | 312 | 412 | 1.60e-27 | 110 |
| Msa0219050 | AT2G36270.3 | 45.333 | 75 | 28 | 2 | 71 | 132 | 145 | 219 | 1.34e-11 | 64.7 |
| Msa0219050 | AT2G36270.1 | 55.340 | 103 | 45 | 1 | 151 | 252 | 312 | 414 | 2.04e-27 | 110 |
| Msa0219050 | AT2G36270.1 | 32.203 | 177 | 56 | 6 | 18 | 132 | 45 | 219 | 1.37e-15 | 76.6 |
| Msa0219050 | AT2G36270.2 | 55.340 | 103 | 45 | 1 | 151 | 252 | 312 | 414 | 2.04e-27 | 110 |
| Msa0219050 | AT2G36270.2 | 32.203 | 177 | 56 | 6 | 18 | 132 | 45 | 219 | 1.37e-15 | 76.6 |
| Msa0219050 | AT2G41070.5 | 32.735 | 223 | 115 | 4 | 25 | 238 | 39 | 235 | 1.19e-25 | 102 |
| Msa0219050 | AT2G41070.3 | 32.735 | 223 | 115 | 4 | 25 | 238 | 39 | 235 | 2.14e-25 | 101 |
| Msa0219050 | AT2G41070.1 | 32.735 | 223 | 115 | 4 | 25 | 238 | 39 | 235 | 2.14e-25 | 101 |
| Msa0219050 | AT2G41070.2 | 32.735 | 223 | 115 | 4 | 25 | 238 | 39 | 235 | 2.14e-25 | 101 |
| Msa0219050 | AT2G41070.4 | 32.735 | 223 | 115 | 4 | 25 | 238 | 48 | 244 | 2.89e-25 | 101 |
| Msa0219050 | AT5G44080.1 | 29.787 | 188 | 99 | 6 | 81 | 252 | 120 | 290 | 2.26e-15 | 75.1 |
| Msa0219050 | AT1G45249.1 | 48.718 | 78 | 32 | 1 | 160 | 237 | 311 | 380 | 8.62e-15 | 73.9 |
| Msa0219050 | AT1G45249.1 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 3.57e-11 | 63.5 |
| Msa0219050 | AT1G45249.7 | 48.718 | 78 | 32 | 1 | 160 | 237 | 326 | 395 | 1.09e-14 | 73.9 |
| Msa0219050 | AT1G45249.7 | 32.576 | 132 | 75 | 4 | 18 | 137 | 44 | 173 | 3.50e-11 | 63.5 |
| Msa0219050 | AT1G45249.6 | 48.718 | 78 | 32 | 1 | 160 | 237 | 326 | 395 | 1.09e-14 | 73.9 |
| Msa0219050 | AT1G45249.6 | 32.576 | 132 | 75 | 4 | 18 | 137 | 44 | 173 | 3.50e-11 | 63.5 |
| Msa0219050 | AT1G03970.1 | 30.168 | 179 | 101 | 5 | 81 | 252 | 85 | 246 | 2.81e-14 | 71.2 |
| Msa0219050 | AT4G34000.1 | 46.667 | 90 | 38 | 2 | 163 | 252 | 352 | 431 | 7.69e-14 | 71.2 |
| Msa0219050 | AT4G34000.4 | 46.667 | 90 | 38 | 2 | 163 | 252 | 352 | 431 | 7.69e-14 | 71.2 |
| Msa0219050 | AT4G34000.2 | 46.667 | 90 | 38 | 2 | 163 | 252 | 352 | 431 | 7.69e-14 | 71.2 |
| Msa0219050 | AT3G19290.4 | 56.452 | 62 | 27 | 0 | 190 | 251 | 348 | 409 | 1.81e-13 | 70.1 |
| Msa0219050 | AT3G19290.1 | 59.016 | 61 | 25 | 0 | 190 | 250 | 348 | 408 | 1.82e-13 | 70.1 |
| Msa0219050 | AT3G19290.5 | 59.016 | 61 | 25 | 0 | 190 | 250 | 348 | 408 | 1.82e-13 | 70.1 |
| Msa0219050 | AT3G19290.3 | 51.316 | 76 | 35 | 1 | 190 | 265 | 348 | 421 | 3.74e-13 | 69.3 |
| Msa0219050 | AT1G49720.1 | 33.333 | 147 | 75 | 5 | 18 | 148 | 31 | 170 | 4.48e-13 | 68.9 |
| Msa0219050 | AT1G49720.1 | 55.738 | 61 | 27 | 0 | 190 | 250 | 308 | 368 | 7.97e-12 | 65.1 |
| Msa0219050 | AT1G49720.3 | 33.333 | 147 | 75 | 5 | 18 | 148 | 31 | 170 | 4.48e-13 | 68.9 |
| Msa0219050 | AT1G49720.3 | 55.738 | 61 | 27 | 0 | 190 | 250 | 308 | 368 | 7.97e-12 | 65.1 |
| Msa0219050 | AT1G49720.2 | 33.333 | 147 | 75 | 5 | 18 | 148 | 31 | 170 | 4.63e-13 | 68.9 |
| Msa0219050 | AT1G49720.2 | 53.226 | 62 | 29 | 0 | 190 | 251 | 308 | 369 | 9.76e-12 | 65.1 |
| Msa0219050 | AT2G17770.2 | 32.653 | 196 | 106 | 7 | 84 | 257 | 2 | 193 | 1.40e-12 | 65.5 |
| Msa0219050 | AT4G34000.3 | 64.583 | 48 | 17 | 0 | 190 | 237 | 369 | 416 | 3.53e-12 | 66.6 |
| Msa0219050 | AT1G45249.3 | 42.697 | 89 | 32 | 2 | 160 | 237 | 311 | 391 | 6.63e-12 | 65.5 |
| Msa0219050 | AT1G45249.3 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 4.90e-11 | 63.2 |
| Msa0219050 | AT4G35900.1 | 52.941 | 68 | 27 | 1 | 195 | 257 | 216 | 283 | 6.71e-11 | 62.0 |
| Msa0219050 | AT1G45249.10 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 8.31e-11 | 62.0 |
| Msa0219050 | AT1G45249.5 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 8.31e-11 | 62.0 |
Find 45 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCATCAATTATCCTCTTTC+TGG | 0.164582 | 2_1:-66521133 | None:intergenic |
| ATGAGTTCCTAGCCAGTATT+TGG | 0.254341 | 2_1:+66520692 | Msa0219050:CDS |
| TAAAATGCTGAAACAATTTC+TGG | 0.256037 | 2_1:+66521659 | Msa0219050:CDS |
| CTTGTCATTTGGTATGTTGC+AGG | 0.294849 | 2_1:-66521084 | None:intergenic |
| TTTCGCTCCAATAGAACTTC+AGG | 0.322405 | 2_1:-66521159 | None:intergenic |
| CCACTGAATATTGCAAGTTC+TGG | 0.324558 | 2_1:+66521045 | Msa0219050:CDS |
| ACTCAGCTCCACTTGTCATT+TGG | 0.334133 | 2_1:-66521095 | None:intergenic |
| AGAAAACTTCGGATGAAGTT+TGG | 0.353717 | 2_1:+66520833 | Msa0219050:CDS |
| CAAAGTTCTTGAAATCATCT+AGG | 0.390515 | 2_1:-66520654 | None:intergenic |
| GCAATCAGCAAAGGTTCAAA+AGG | 0.420453 | 2_1:+66521909 | Msa0219050:CDS |
| GACTGAATCACCAAGTTGTT+GGG | 0.423167 | 2_1:-66520788 | None:intergenic |
| ATCACTGGAACTCCAAATAC+TGG | 0.430426 | 2_1:-66520704 | None:intergenic |
| TTTCTTCTTTGAATTGTGGT+TGG | 0.440685 | 2_1:-66520873 | None:intergenic |
| GAGGATTTCTTGGTAAAAGC+TGG | 0.453104 | 2_1:+66520955 | Msa0219050:CDS |
| GTCATTGAGGCTTATTCACC+AGG | 0.470334 | 2_1:-66521959 | None:intergenic |
| AGACTGAATCACCAAGTTGT+TGG | 0.471123 | 2_1:-66520789 | None:intergenic |
| ATCACCAAGTTGTTGGGAAC+TGG | 0.493001 | 2_1:-66520782 | None:intergenic |
| CACACCAGTTCCCAACAACT+TGG | 0.498257 | 2_1:+66520778 | Msa0219050:CDS |
| TCCTCAAAAGTCATTTCTCC+AGG | 0.507331 | 2_1:-66520937 | None:intergenic |
| CAATCAGCAAAGGTTCAAAA+GGG | 0.509524 | 2_1:+66521910 | Msa0219050:CDS |
| TTCGCTCCAATAGAACTTCA+GGG | 0.513014 | 2_1:-66521158 | None:intergenic |
| TAGGAACTCATCCATGTTGA+GGG | 0.517404 | 2_1:-66520680 | None:intergenic |
| TTGTGTAGTAGCTTCATCAC+TGG | 0.520796 | 2_1:-66520719 | None:intergenic |
| ACGTTCTCGAGCAAGACGTC+AGG | 0.524988 | 2_1:+66521218 | Msa0219050:CDS |
| ACCAGAAAGAGGATAATTGA+TGG | 0.532983 | 2_1:+66521132 | Msa0219050:CDS |
| TCCAGTTTGCAAGAAAACTT+CGG | 0.535572 | 2_1:+66520822 | Msa0219050:CDS |
| AAAGTTCTTGAAATCATCTA+GGG | 0.543413 | 2_1:-66520653 | None:intergenic |
| GCAAAGAAAGCAATCAGCAA+AGG | 0.559335 | 2_1:+66521900 | Msa0219050:CDS |
| TTGTCGTTTCAGAATCATAG+TGG | 0.559475 | 2_1:+66521000 | Msa0219050:CDS |
| CGCTCCAATAGAACTTCAGG+GGG | 0.565451 | 2_1:-66521156 | None:intergenic |
| CTAGGAACTCATCCATGTTG+AGG | 0.566833 | 2_1:-66520681 | None:intergenic |
| CTCAAGAAACAAGAAACACC+TGG | 0.574200 | 2_1:+66520919 | Msa0219050:CDS |
| AGGCTGAAGCTGAGAACAAG+AGG | 0.580689 | 2_1:+66521778 | Msa0219050:intron |
| TGGAACTCCAAATACTGGCT+AGG | 0.584202 | 2_1:-66520699 | None:intergenic |
| TCTACAACAATTAGATCAAG+AGG | 0.584508 | 2_1:+66520600 | Msa0219050:CDS |
| AATCAAGCTCAAGCACAACC+TGG | 0.585556 | 2_1:+66521941 | Msa0219050:CDS |
| GTGGAGCTGCTACCAGAAAG+AGG | 0.587980 | 2_1:+66521121 | Msa0219050:CDS |
| GGCTTATACAATAGAGCTAG+AGG | 0.593351 | 2_1:+66521608 | Msa0219050:intron |
| GAACTTTGACTCCCTCAACA+TGG | 0.606896 | 2_1:+66520669 | Msa0219050:CDS |
| GCAACATACCAAATGACAAG+TGG | 0.610150 | 2_1:+66521087 | Msa0219050:CDS |
| ACAAGTGGAGCTGAGTCAAG+TGG | 0.615825 | 2_1:+66521102 | Msa0219050:CDS |
| CCAGAACTTGCAATATTCAG+TGG | 0.629052 | 2_1:-66521045 | None:intergenic |
| TCGCTCCAATAGAACTTCAG+GGG | 0.629189 | 2_1:-66521157 | None:intergenic |
| TGAGAACAAGAGGAAACAAG+AGG | 0.643173 | 2_1:+66521788 | Msa0219050:CDS |
| AATCAGCAAAGGTTCAAAAG+GGG | 0.678708 | 2_1:+66521911 | Msa0219050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTCTTCTTTGAATTG+TGG | - | chr2_1:66520880-66520899 | None:intergenic | 20.0% |
| !! | TACTTATTAATCACATAACT+TGG | + | chr2_1:66521286-66521305 | Msa0219050:intron | 20.0% |
| !!! | TTTTTTATATGCAAACGTTA+CGG | - | chr2_1:66521573-66521592 | None:intergenic | 20.0% |
| !!! | TACCTATTTAAATCTGAAAT+AGG | + | chr2_1:66521758-66521777 | Msa0219050:intron | 20.0% |
| !!! | TTATTTTCTTCTTTGAATTG+TGG | - | chr2_1:66520880-66520899 | None:intergenic | 20.0% |
| !! | TACTTATTAATCACATAACT+TGG | + | chr2_1:66521286-66521305 | Msa0219050:intron | 20.0% |
| !!! | TTTTTTATATGCAAACGTTA+CGG | - | chr2_1:66521573-66521592 | None:intergenic | 20.0% |
| !!! | TACCTATTTAAATCTGAAAT+AGG | + | chr2_1:66521758-66521777 | Msa0219050:intron | 20.0% |
| ! | AAAGTTCTTGAAATCATCTA+GGG | - | chr2_1:66520656-66520675 | None:intergenic | 25.0% |
| ! | AATGATGAAAAATCGAGAAT+CGG | + | chr2_1:66521191-66521210 | Msa0219050:CDS | 25.0% |
| !! | AGATTTTAAATAACAGTCTG+TGG | + | chr2_1:66521468-66521487 | Msa0219050:intron | 25.0% |
| !!! | TATGTCTCTGAAATTAAAGT+TGG | + | chr2_1:66521522-66521541 | Msa0219050:intron | 25.0% |
| !!! | ATGTCTCTGAAATTAAAGTT+GGG | + | chr2_1:66521523-66521542 | Msa0219050:intron | 25.0% |
| ! | AAAAAAAAATCTTGCAATGC+AGG | + | chr2_1:66521587-66521606 | Msa0219050:intron | 25.0% |
| ! | TAAAATGCTGAAACAATTTC+TGG | + | chr2_1:66521659-66521678 | Msa0219050:CDS | 25.0% |
| ! | CAATACTGAAACTGAATATA+CGG | + | chr2_1:66521686-66521705 | Msa0219050:intron | 25.0% |
| ! | AGCCTATTTCAGATTTAAAT+AGG | - | chr2_1:66521763-66521782 | None:intergenic | 25.0% |
| ! | AAAGTTCTTGAAATCATCTA+GGG | - | chr2_1:66520656-66520675 | None:intergenic | 25.0% |
| ! | AATGATGAAAAATCGAGAAT+CGG | + | chr2_1:66521191-66521210 | Msa0219050:CDS | 25.0% |
| !! | AGATTTTAAATAACAGTCTG+TGG | + | chr2_1:66521468-66521487 | Msa0219050:intron | 25.0% |
| !!! | TATGTCTCTGAAATTAAAGT+TGG | + | chr2_1:66521522-66521541 | Msa0219050:intron | 25.0% |
| !!! | ATGTCTCTGAAATTAAAGTT+GGG | + | chr2_1:66521523-66521542 | Msa0219050:intron | 25.0% |
| ! | AAAAAAAAATCTTGCAATGC+AGG | + | chr2_1:66521587-66521606 | Msa0219050:intron | 25.0% |
| ! | TAAAATGCTGAAACAATTTC+TGG | + | chr2_1:66521659-66521678 | Msa0219050:CDS | 25.0% |
| ! | CAATACTGAAACTGAATATA+CGG | + | chr2_1:66521686-66521705 | Msa0219050:intron | 25.0% |
| ! | AGCCTATTTCAGATTTAAAT+AGG | - | chr2_1:66521763-66521782 | None:intergenic | 25.0% |
| TCTACAACAATTAGATCAAG+AGG | + | chr2_1:66520600-66520619 | Msa0219050:CDS | 30.0% | |
| CAAAGTTCTTGAAATCATCT+AGG | - | chr2_1:66520657-66520676 | None:intergenic | 30.0% | |
| !!! | TGGTTGGTTTTTATGAATCT+CGG | - | chr2_1:66520860-66520879 | None:intergenic | 30.0% |
| TTTCTTCTTTGAATTGTGGT+TGG | - | chr2_1:66520876-66520895 | None:intergenic | 30.0% | |
| ! | TGAGTGTCTCATTTCTTTTA+AGG | - | chr2_1:66520903-66520922 | None:intergenic | 30.0% |
| !! | AATGACTTTTGAGGATTTCT+TGG | + | chr2_1:66520945-66520964 | Msa0219050:CDS | 30.0% |
| TCTACAACAATTAGATCAAG+AGG | + | chr2_1:66520600-66520619 | Msa0219050:CDS | 30.0% | |
| CAAAGTTCTTGAAATCATCT+AGG | - | chr2_1:66520657-66520676 | None:intergenic | 30.0% | |
| !!! | TGGTTGGTTTTTATGAATCT+CGG | - | chr2_1:66520860-66520879 | None:intergenic | 30.0% |
| TTTCTTCTTTGAATTGTGGT+TGG | - | chr2_1:66520876-66520895 | None:intergenic | 30.0% | |
| ! | TGAGTGTCTCATTTCTTTTA+AGG | - | chr2_1:66520903-66520922 | None:intergenic | 30.0% |
| !! | AATGACTTTTGAGGATTTCT+TGG | + | chr2_1:66520945-66520964 | Msa0219050:CDS | 30.0% |
| TCCAGTTTGCAAGAAAACTT+CGG | + | chr2_1:66520822-66520841 | Msa0219050:CDS | 35.0% | |
| AGAAAACTTCGGATGAAGTT+TGG | + | chr2_1:66520833-66520852 | Msa0219050:CDS | 35.0% | |
| ! | TTGTCGTTTCAGAATCATAG+TGG | + | chr2_1:66521000-66521019 | Msa0219050:CDS | 35.0% |
| ACCAGAAAGAGGATAATTGA+TGG | + | chr2_1:66521132-66521151 | Msa0219050:CDS | 35.0% | |
| ACCATCAATTATCCTCTTTC+TGG | - | chr2_1:66521136-66521155 | None:intergenic | 35.0% | |
| TACAATCGTGTTTACCTTTG+CGG | + | chr2_1:66521330-66521349 | Msa0219050:intron | 35.0% | |
| TTGGATTTATCGCGAAATCA+AGG | - | chr2_1:66521368-66521387 | None:intergenic | 35.0% | |
| AAATCCAACACAAATGTGAC+AGG | + | chr2_1:66521380-66521399 | Msa0219050:intron | 35.0% | |
| TTATGTCACAGCCTAAATCA+CGG | - | chr2_1:66521494-66521513 | None:intergenic | 35.0% | |
| !! | CTCTGAAATTAAAGTTGGGA+CGG | + | chr2_1:66521527-66521546 | Msa0219050:intron | 35.0% |
| CAATCAGCAAAGGTTCAAAA+GGG | + | chr2_1:66521910-66521929 | Msa0219050:CDS | 35.0% | |
| AATCAGCAAAGGTTCAAAAG+GGG | + | chr2_1:66521911-66521930 | Msa0219050:CDS | 35.0% | |
| TCCAGTTTGCAAGAAAACTT+CGG | + | chr2_1:66520822-66520841 | Msa0219050:CDS | 35.0% | |
| AGAAAACTTCGGATGAAGTT+TGG | + | chr2_1:66520833-66520852 | Msa0219050:CDS | 35.0% | |
| ! | TTGTCGTTTCAGAATCATAG+TGG | + | chr2_1:66521000-66521019 | Msa0219050:CDS | 35.0% |
| ACCAGAAAGAGGATAATTGA+TGG | + | chr2_1:66521132-66521151 | Msa0219050:CDS | 35.0% | |
| ACCATCAATTATCCTCTTTC+TGG | - | chr2_1:66521136-66521155 | None:intergenic | 35.0% | |
| TACAATCGTGTTTACCTTTG+CGG | + | chr2_1:66521330-66521349 | Msa0219050:intron | 35.0% | |
| TTGGATTTATCGCGAAATCA+AGG | - | chr2_1:66521368-66521387 | None:intergenic | 35.0% | |
| AAATCCAACACAAATGTGAC+AGG | + | chr2_1:66521380-66521399 | Msa0219050:intron | 35.0% | |
| TTATGTCACAGCCTAAATCA+CGG | - | chr2_1:66521494-66521513 | None:intergenic | 35.0% | |
| !! | CTCTGAAATTAAAGTTGGGA+CGG | + | chr2_1:66521527-66521546 | Msa0219050:intron | 35.0% |
| CAATCAGCAAAGGTTCAAAA+GGG | + | chr2_1:66521910-66521929 | Msa0219050:CDS | 35.0% | |
| AATCAGCAAAGGTTCAAAAG+GGG | + | chr2_1:66521911-66521930 | Msa0219050:CDS | 35.0% | |
| !!! | GTAAGTGCGTTTTGATTGCT+CGG | - | chr2_1:66520634-66520653 | None:intergenic | 40.0% |
| TAGGAACTCATCCATGTTGA+GGG | - | chr2_1:66520683-66520702 | None:intergenic | 40.0% | |
| ATGAGTTCCTAGCCAGTATT+TGG | + | chr2_1:66520692-66520711 | Msa0219050:CDS | 40.0% | |
| ATCACTGGAACTCCAAATAC+TGG | - | chr2_1:66520707-66520726 | None:intergenic | 40.0% | |
| TTGTGTAGTAGCTTCATCAC+TGG | - | chr2_1:66520722-66520741 | None:intergenic | 40.0% | |
| GACTGAATCACCAAGTTGTT+GGG | - | chr2_1:66520791-66520810 | None:intergenic | 40.0% | |
| AGACTGAATCACCAAGTTGT+TGG | - | chr2_1:66520792-66520811 | None:intergenic | 40.0% | |
| ! | TTTTCTTGCAAACTGGAGGA+GGG | - | chr2_1:66520819-66520838 | None:intergenic | 40.0% |
| ! | GAAGTTTTCTTGCAAACTGG+AGG | - | chr2_1:66520823-66520842 | None:intergenic | 40.0% |
| ! | TCCGAAGTTTTCTTGCAAAC+TGG | - | chr2_1:66520826-66520845 | None:intergenic | 40.0% |
| CTCAAGAAACAAGAAACACC+TGG | + | chr2_1:66520919-66520938 | Msa0219050:CDS | 40.0% | |
| ! | ACCTGGAGAAATGACTTTTG+AGG | + | chr2_1:66520936-66520955 | Msa0219050:CDS | 40.0% |
| TCCTCAAAAGTCATTTCTCC+AGG | - | chr2_1:66520940-66520959 | None:intergenic | 40.0% | |
| GAGGATTTCTTGGTAAAAGC+TGG | + | chr2_1:66520955-66520974 | Msa0219050:CDS | 40.0% | |
| CCAGAACTTGCAATATTCAG+TGG | - | chr2_1:66521048-66521067 | None:intergenic | 40.0% | |
| CCACTGAATATTGCAAGTTC+TGG | + | chr2_1:66521045-66521064 | Msa0219050:CDS | 40.0% | |
| ! | CTTGTCATTTGGTATGTTGC+AGG | - | chr2_1:66521087-66521106 | None:intergenic | 40.0% |
| GCAACATACCAAATGACAAG+TGG | + | chr2_1:66521087-66521106 | Msa0219050:CDS | 40.0% | |
| TTCGCTCCAATAGAACTTCA+GGG | - | chr2_1:66521161-66521180 | None:intergenic | 40.0% | |
| TTTCGCTCCAATAGAACTTC+AGG | - | chr2_1:66521162-66521181 | None:intergenic | 40.0% | |
| TGAACCTGTCACATTTGTGT+TGG | - | chr2_1:66521387-66521406 | None:intergenic | 40.0% | |
| AAAGTCTGTGACTGTGATTG+AGG | - | chr2_1:66521411-66521430 | None:intergenic | 40.0% | |
| GTGATTTAGGCTGTGACATA+AGG | + | chr2_1:66521493-66521512 | Msa0219050:intron | 40.0% | |
| GGCTTATACAATAGAGCTAG+AGG | + | chr2_1:66521608-66521627 | Msa0219050:intron | 40.0% | |
| TGAGAACAAGAGGAAACAAG+AGG | + | chr2_1:66521788-66521807 | Msa0219050:CDS | 40.0% | |
| GCAAAGAAAGCAATCAGCAA+AGG | + | chr2_1:66521900-66521919 | Msa0219050:CDS | 40.0% | |
| GCAATCAGCAAAGGTTCAAA+AGG | + | chr2_1:66521909-66521928 | Msa0219050:CDS | 40.0% | |
| !!! | GTAAGTGCGTTTTGATTGCT+CGG | - | chr2_1:66520634-66520653 | None:intergenic | 40.0% |
| TAGGAACTCATCCATGTTGA+GGG | - | chr2_1:66520683-66520702 | None:intergenic | 40.0% | |
| ATGAGTTCCTAGCCAGTATT+TGG | + | chr2_1:66520692-66520711 | Msa0219050:CDS | 40.0% | |
| ATCACTGGAACTCCAAATAC+TGG | - | chr2_1:66520707-66520726 | None:intergenic | 40.0% | |
| TTGTGTAGTAGCTTCATCAC+TGG | - | chr2_1:66520722-66520741 | None:intergenic | 40.0% | |
| GACTGAATCACCAAGTTGTT+GGG | - | chr2_1:66520791-66520810 | None:intergenic | 40.0% | |
| AGACTGAATCACCAAGTTGT+TGG | - | chr2_1:66520792-66520811 | None:intergenic | 40.0% | |
| ! | TTTTCTTGCAAACTGGAGGA+GGG | - | chr2_1:66520819-66520838 | None:intergenic | 40.0% |
| ! | GAAGTTTTCTTGCAAACTGG+AGG | - | chr2_1:66520823-66520842 | None:intergenic | 40.0% |
| ! | TCCGAAGTTTTCTTGCAAAC+TGG | - | chr2_1:66520826-66520845 | None:intergenic | 40.0% |
| CTCAAGAAACAAGAAACACC+TGG | + | chr2_1:66520919-66520938 | Msa0219050:CDS | 40.0% | |
| ! | ACCTGGAGAAATGACTTTTG+AGG | + | chr2_1:66520936-66520955 | Msa0219050:CDS | 40.0% |
| TCCTCAAAAGTCATTTCTCC+AGG | - | chr2_1:66520940-66520959 | None:intergenic | 40.0% | |
| GAGGATTTCTTGGTAAAAGC+TGG | + | chr2_1:66520955-66520974 | Msa0219050:CDS | 40.0% | |
| CCAGAACTTGCAATATTCAG+TGG | - | chr2_1:66521048-66521067 | None:intergenic | 40.0% | |
| CCACTGAATATTGCAAGTTC+TGG | + | chr2_1:66521045-66521064 | Msa0219050:CDS | 40.0% | |
| ! | CTTGTCATTTGGTATGTTGC+AGG | - | chr2_1:66521087-66521106 | None:intergenic | 40.0% |
| GCAACATACCAAATGACAAG+TGG | + | chr2_1:66521087-66521106 | Msa0219050:CDS | 40.0% | |
| TTCGCTCCAATAGAACTTCA+GGG | - | chr2_1:66521161-66521180 | None:intergenic | 40.0% | |
| TTTCGCTCCAATAGAACTTC+AGG | - | chr2_1:66521162-66521181 | None:intergenic | 40.0% | |
| TGAACCTGTCACATTTGTGT+TGG | - | chr2_1:66521387-66521406 | None:intergenic | 40.0% | |
| AAAGTCTGTGACTGTGATTG+AGG | - | chr2_1:66521411-66521430 | None:intergenic | 40.0% | |
| GTGATTTAGGCTGTGACATA+AGG | + | chr2_1:66521493-66521512 | Msa0219050:intron | 40.0% | |
| GGCTTATACAATAGAGCTAG+AGG | + | chr2_1:66521608-66521627 | Msa0219050:intron | 40.0% | |
| TGAGAACAAGAGGAAACAAG+AGG | + | chr2_1:66521788-66521807 | Msa0219050:CDS | 40.0% | |
| GCAAAGAAAGCAATCAGCAA+AGG | + | chr2_1:66521900-66521919 | Msa0219050:CDS | 40.0% | |
| GCAATCAGCAAAGGTTCAAA+AGG | + | chr2_1:66521909-66521928 | Msa0219050:CDS | 40.0% | |
| GAACTTTGACTCCCTCAACA+TGG | + | chr2_1:66520669-66520688 | Msa0219050:CDS | 45.0% | |
| CTAGGAACTCATCCATGTTG+AGG | - | chr2_1:66520684-66520703 | None:intergenic | 45.0% | |
| ! | TGGAACTCCAAATACTGGCT+AGG | - | chr2_1:66520702-66520721 | None:intergenic | 45.0% |
| ATCACCAAGTTGTTGGGAAC+TGG | - | chr2_1:66520785-66520804 | None:intergenic | 45.0% | |
| ! | GTTTTCTTGCAAACTGGAGG+AGG | - | chr2_1:66520820-66520839 | None:intergenic | 45.0% |
| ACTCAGCTCCACTTGTCATT+TGG | - | chr2_1:66521098-66521117 | None:intergenic | 45.0% | |
| TCGCTCCAATAGAACTTCAG+GGG | - | chr2_1:66521160-66521179 | None:intergenic | 45.0% | |
| ! | TTGGAGAGTGCATCTGTGTA+AGG | + | chr2_1:66521305-66521324 | Msa0219050:intron | 45.0% |
| ! | GCAAACGTTACGGACTATCA+CGG | - | chr2_1:66521563-66521582 | None:intergenic | 45.0% |
| AATCAAGCTCAAGCACAACC+TGG | + | chr2_1:66521941-66521960 | Msa0219050:CDS | 45.0% | |
| GAACTTTGACTCCCTCAACA+TGG | + | chr2_1:66520669-66520688 | Msa0219050:CDS | 45.0% | |
| CTAGGAACTCATCCATGTTG+AGG | - | chr2_1:66520684-66520703 | None:intergenic | 45.0% | |
| ! | TGGAACTCCAAATACTGGCT+AGG | - | chr2_1:66520702-66520721 | None:intergenic | 45.0% |
| ATCACCAAGTTGTTGGGAAC+TGG | - | chr2_1:66520785-66520804 | None:intergenic | 45.0% | |
| ! | GTTTTCTTGCAAACTGGAGG+AGG | - | chr2_1:66520820-66520839 | None:intergenic | 45.0% |
| ACTCAGCTCCACTTGTCATT+TGG | - | chr2_1:66521098-66521117 | None:intergenic | 45.0% | |
| TCGCTCCAATAGAACTTCAG+GGG | - | chr2_1:66521160-66521179 | None:intergenic | 45.0% | |
| ! | TTGGAGAGTGCATCTGTGTA+AGG | + | chr2_1:66521305-66521324 | Msa0219050:intron | 45.0% |
| ! | GCAAACGTTACGGACTATCA+CGG | - | chr2_1:66521563-66521582 | None:intergenic | 45.0% |
| AATCAAGCTCAAGCACAACC+TGG | + | chr2_1:66521941-66521960 | Msa0219050:CDS | 45.0% | |
| CACACCAGTTCCCAACAACT+TGG | + | chr2_1:66520778-66520797 | Msa0219050:CDS | 50.0% | |
| ACAAGTGGAGCTGAGTCAAG+TGG | + | chr2_1:66521102-66521121 | Msa0219050:CDS | 50.0% | |
| TGGTCCCCCTGAAGTTCTAT+TGG | + | chr2_1:66521152-66521171 | Msa0219050:CDS | 50.0% | |
| CGCTCCAATAGAACTTCAGG+GGG | - | chr2_1:66521159-66521178 | None:intergenic | 50.0% | |
| ACAGTCTGTGGCCGTGATTT+AGG | + | chr2_1:66521480-66521499 | Msa0219050:intron | 50.0% | |
| AGGCTGAAGCTGAGAACAAG+AGG | + | chr2_1:66521778-66521797 | Msa0219050:intron | 50.0% | |
| CACACCAGTTCCCAACAACT+TGG | + | chr2_1:66520778-66520797 | Msa0219050:CDS | 50.0% | |
| ACAAGTGGAGCTGAGTCAAG+TGG | + | chr2_1:66521102-66521121 | Msa0219050:CDS | 50.0% | |
| TGGTCCCCCTGAAGTTCTAT+TGG | + | chr2_1:66521152-66521171 | Msa0219050:CDS | 50.0% | |
| CGCTCCAATAGAACTTCAGG+GGG | - | chr2_1:66521159-66521178 | None:intergenic | 50.0% | |
| ACAGTCTGTGGCCGTGATTT+AGG | + | chr2_1:66521480-66521499 | Msa0219050:intron | 50.0% | |
| AGGCTGAAGCTGAGAACAAG+AGG | + | chr2_1:66521778-66521797 | Msa0219050:intron | 50.0% | |
| GTGGAGCTGCTACCAGAAAG+AGG | + | chr2_1:66521121-66521140 | Msa0219050:CDS | 55.0% | |
| ACGTTCTCGAGCAAGACGTC+AGG | + | chr2_1:66521218-66521237 | Msa0219050:CDS | 55.0% | |
| GGATTGTGAAGCGACCGCAA+AGG | - | chr2_1:66521347-66521366 | None:intergenic | 55.0% | |
| GTGGAGCTGCTACCAGAAAG+AGG | + | chr2_1:66521121-66521140 | Msa0219050:CDS | 55.0% | |
| ACGTTCTCGAGCAAGACGTC+AGG | + | chr2_1:66521218-66521237 | Msa0219050:CDS | 55.0% | |
| GGATTGTGAAGCGACCGCAA+AGG | - | chr2_1:66521347-66521366 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 66520595 | 66521966 | 66520595 | ID=Msa0219050;Name=Msa0219050 |
| chr2_1 | mRNA | 66520595 | 66521966 | 66520595 | ID=Msa0219050-mRNA-1;Parent=Msa0219050;Name=Msa0219050-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0|0|1|1|1|4|0|272 |
| chr2_1 | exon | 66520595 | 66521239 | 66520595 | ID=Msa0219050-mRNA-1:exon:18739;Parent=Msa0219050-mRNA-1 |
| chr2_1 | exon | 66521609 | 66521680 | 66521609 | ID=Msa0219050-mRNA-1:exon:18740;Parent=Msa0219050-mRNA-1 |
| chr2_1 | exon | 66521780 | 66521809 | 66521780 | ID=Msa0219050-mRNA-1:exon:18741;Parent=Msa0219050-mRNA-1 |
| chr2_1 | exon | 66521895 | 66521966 | 66521895 | ID=Msa0219050-mRNA-1:exon:18742;Parent=Msa0219050-mRNA-1 |
| chr2_1 | CDS | 66520595 | 66521239 | 66520595 | ID=Msa0219050-mRNA-1:cds;Parent=Msa0219050-mRNA-1 |
| chr2_1 | CDS | 66521609 | 66521680 | 66521609 | ID=Msa0219050-mRNA-1:cds;Parent=Msa0219050-mRNA-1 |
| chr2_1 | CDS | 66521780 | 66521809 | 66521780 | ID=Msa0219050-mRNA-1:cds;Parent=Msa0219050-mRNA-1 |
| chr2_1 | CDS | 66521895 | 66521966 | 66521895 | ID=Msa0219050-mRNA-1:cds;Parent=Msa0219050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
