Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220330 | XP_013465039.1 | 91.489 | 235 | 8 | 1 | 1 | 223 | 1 | 235 | 1.68e-155 | 440 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220330 | sp|Q8GZA8|ULT1_ARATH | 66.667 | 234 | 66 | 1 | 2 | 223 | 3 | 236 | 9.05e-115 | 330 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220330 | A0A072VAL1 | 91.489 | 235 | 8 | 1 | 1 | 223 | 1 | 235 | 8.04e-156 | 440 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0220330 | TF | ULT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220330 | MtrunA17_Chr2g0323881 | 91.489 | 235 | 8 | 1 | 1 | 223 | 1 | 235 | 1.55e-159 | 440 |
| Msa0220330 | MtrunA17_Chr4g0022491 | 73.191 | 235 | 51 | 1 | 1 | 223 | 4 | 238 | 8.25e-127 | 358 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220330 | AT4G28190.1 | 66.667 | 234 | 66 | 1 | 2 | 223 | 3 | 236 | 9.20e-116 | 330 |
| Msa0220330 | AT4G28190.2 | 58.868 | 265 | 66 | 2 | 2 | 223 | 3 | 267 | 5.56e-109 | 314 |
| Msa0220330 | AT2G20825.1 | 63.793 | 232 | 65 | 3 | 5 | 223 | 1 | 226 | 2.60e-105 | 303 |
Find 51 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGCCCATTATTGGATTTA+TGG | 0.084544 | 2_1:-68530340 | None:intergenic |
| ATGCTTTAGCTGATCCTAAT+TGG | 0.234644 | 2_1:+68530456 | Msa0220330:CDS |
| GGAAATGGAAGAACAATATC+TGG | 0.261820 | 2_1:+68530231 | Msa0220330:CDS |
| GGTTCCCATAAATCCAATAA+TGG | 0.274179 | 2_1:+68530335 | Msa0220330:CDS |
| ATTGATGGAGTGAAGAAAAT+TGG | 0.281708 | 2_1:+68529198 | Msa0220330:CDS |
| CTGCCCATTATTGGATTTAT+GGG | 0.290191 | 2_1:-68530339 | None:intergenic |
| AGATCGGAACATTTCCAATT+AGG | 0.291460 | 2_1:-68530470 | None:intergenic |
| GTGGCACGCCTGCCCATTAT+TGG | 0.300408 | 2_1:-68530348 | None:intergenic |
| GCTGCGTTTGAGAAACATTC+TGG | 0.316093 | 2_1:+68530194 | Msa0220330:CDS |
| ACAAGAAGTGCAACCTTTGC+AGG | 0.345352 | 2_1:-68531508 | None:intergenic |
| TGCACTTCTTGTGTGTGCTT+TGG | 0.357522 | 2_1:+68531519 | Msa0220330:CDS |
| CATGATATGAACTCAATCTT+TGG | 0.366356 | 2_1:-68531604 | None:intergenic |
| TTGCACTTGCCAGACTTGTA+TGG | 0.394373 | 2_1:+68531566 | Msa0220330:CDS |
| GTTCCCATAAATCCAATAAT+GGG | 0.405393 | 2_1:+68530336 | Msa0220330:CDS |
| GAAGAGAAACAGCTAGGAAA+TGG | 0.415093 | 2_1:+68530216 | Msa0220330:CDS |
| GTGATGCTGTTGGAAGGCTT+AGG | 0.416932 | 2_1:+68529265 | Msa0220330:CDS |
| GACATTCCTCTTTAGTTCTC+AGG | 0.425086 | 2_1:-68530421 | None:intergenic |
| ATCACTTGTGAATGCATCCC+TGG | 0.433805 | 2_1:+68529312 | Msa0220330:CDS |
| TGATGCTGTTGGAAGGCTTA+GGG | 0.435789 | 2_1:+68529266 | Msa0220330:CDS |
| TGTTCAGTGATGAAGAGTTA+AGG | 0.436246 | 2_1:+68529172 | Msa0220330:CDS |
| AATATCTGGGTAACAGTTGA+TGG | 0.450966 | 2_1:+68530245 | Msa0220330:CDS |
| GTTCAGTGATGAAGAGTTAA+GGG | 0.457322 | 2_1:+68529173 | Msa0220330:CDS |
| GAAGAGTTAAGGGATATTGA+TGG | 0.458252 | 2_1:+68529183 | Msa0220330:CDS |
| ATTGGATTTATGGGAACCAT+TGG | 0.461924 | 2_1:-68530330 | None:intergenic |
| GATTGAACATACTTGTCATA+TGG | 0.463333 | 2_1:-68530494 | None:intergenic |
| TTGTAAAGTCCATACAAGTC+TGG | 0.482167 | 2_1:-68531575 | None:intergenic |
| AGACTTGTATGGACTTTACA+AGG | 0.505964 | 2_1:+68531577 | Msa0220330:CDS |
| GAATGTTTCTCAAACGCAGC+AGG | 0.520755 | 2_1:-68530191 | None:intergenic |
| AAAGGACCTTCTTCACAGCC+AGG | 0.525715 | 2_1:-68529330 | None:intergenic |
| AACGGGTTAGAGAGAGAAAG+TGG | 0.529218 | 2_1:+68529141 | Msa0220330:CDS |
| TGCATCCCTGGCTGTGAAGA+AGG | 0.533173 | 2_1:+68529324 | Msa0220330:CDS |
| CATAGATACGGTGATGCTGT+TGG | 0.535605 | 2_1:+68529255 | Msa0220330:CDS |
| CCATAAATCCAATAATGGGC+AGG | 0.536031 | 2_1:+68530340 | Msa0220330:CDS |
| TGTGATGATGAAGAAGAAAG+AGG | 0.552017 | 2_1:+68531447 | Msa0220330:CDS |
| ACTCATTCTGCAGCCTGCAA+AGG | 0.562795 | 2_1:+68531495 | Msa0220330:CDS |
| CAGCTAAAGCATCATGGTGA+CGG | 0.575142 | 2_1:-68530445 | None:intergenic |
| GAAATGGAAGAACAATATCT+GGG | 0.577525 | 2_1:+68530232 | Msa0220330:CDS |
| GTTCCGCCTGAGAACTAAAG+AGG | 0.578750 | 2_1:+68530415 | Msa0220330:CDS |
| GATACGGTGATGCTGTTGGA+AGG | 0.589849 | 2_1:+68529259 | Msa0220330:CDS |
| ATACTTGTCATATGGAAGAT+CGG | 0.592135 | 2_1:-68530486 | None:intergenic |
| TAGGATCAGCTAAAGCATCA+TGG | 0.594494 | 2_1:-68530451 | None:intergenic |
| ATTCTGGAAGAGAAACAGCT+AGG | 0.616300 | 2_1:+68530210 | Msa0220330:CDS |
| GGTAACAGTTGATGGCGAGA+AGG | 0.622326 | 2_1:+68530253 | Msa0220330:CDS |
| GGTTGTACTAGTCATAGATA+CGG | 0.623720 | 2_1:+68529243 | Msa0220330:CDS |
| AAGGACCTTCTTCACAGCCA+GGG | 0.635459 | 2_1:-68529329 | None:intergenic |
| TACAGCAGATAAACTCGTCA+CGG | 0.635905 | 2_1:-68530370 | None:intergenic |
| ATTCCTCTTTAGTTCTCAGG+CGG | 0.652096 | 2_1:-68530418 | None:intergenic |
| GGCAGTCGCAGAGTTTACAG+AGG | 0.678401 | 2_1:+68531468 | Msa0220330:CDS |
| GAATGTATTGAAGTTATGTG+TGG | 0.706126 | 2_1:+68529222 | Msa0220330:CDS |
| ACGGGTTAGAGAGAGAAAGT+GGG | 0.717955 | 2_1:+68529142 | Msa0220330:CDS |
| AGCAGATAAACTCGTCACGG+TGG | 0.722161 | 2_1:-68530367 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTCTCTTATTATTAAAAA+TGG | + | chr2_1:68529491-68529510 | Msa0220330:intron | 10.0% |
| !! | ATTCTCTTATTATTAAAAAT+GGG | + | chr2_1:68529492-68529511 | Msa0220330:intron | 10.0% |
| !! | TAAAAATCATAATGAAAATT+AGG | - | chr2_1:68530152-68530171 | None:intergenic | 10.0% |
| !! | TTCTCTTATTATTAAAAATG+GGG | + | chr2_1:68529493-68529512 | Msa0220330:intron | 15.0% |
| !! | TCTATAAATTTATGTATTGA+AGG | + | chr2_1:68530608-68530627 | Msa0220330:intron | 15.0% |
| !! | GAGATATAATAGATAGAAAA+AGG | - | chr2_1:68529351-68529370 | None:intergenic | 20.0% |
| !!! | TGTTTTGTTTCATTTGATAT+TGG | + | chr2_1:68529587-68529606 | Msa0220330:intron | 20.0% |
| !! | TGAAGGTAAATAATTAAACT+TGG | - | chr2_1:68530063-68530082 | None:intergenic | 20.0% |
| !! | CAAAAATTATCACAAGATAA+GGG | - | chr2_1:68530564-68530583 | None:intergenic | 20.0% |
| !! | ACAAAAATTATCACAAGATA+AGG | - | chr2_1:68530565-68530584 | None:intergenic | 20.0% |
| !! | ATAGATAAACAAAAGTTACT+TGG | - | chr2_1:68530593-68530612 | None:intergenic | 20.0% |
| !! | TAATACTAGAACTAGAATAA+TGG | - | chr2_1:68530690-68530709 | None:intergenic | 20.0% |
| !!! | TGAATAAATTTTTGCCATTT+AGG | - | chr2_1:68531244-68531263 | None:intergenic | 20.0% |
| ! | TTGCTTTAATTCTTACATTG+TGG | + | chr2_1:68529923-68529942 | Msa0220330:intron | 25.0% |
| !! | ACTAGTTTAAAACAGATAGA+GGG | - | chr2_1:68529979-68529998 | None:intergenic | 25.0% |
| !! | AACTAGTTTAAAACAGATAG+AGG | - | chr2_1:68529980-68529999 | None:intergenic | 25.0% |
| ! | GAAACAAGTTATAATTCACT+TGG | - | chr2_1:68530041-68530060 | None:intergenic | 25.0% |
| !!! | AGCATTTTGATTCAAAATGA+AGG | - | chr2_1:68530080-68530099 | None:intergenic | 25.0% |
| !! | GTAGAACTGTTTTATACAAT+GGG | - | chr2_1:68530280-68530299 | None:intergenic | 25.0% |
| !! | AGTAGAACTGTTTTATACAA+TGG | - | chr2_1:68530281-68530300 | None:intergenic | 25.0% |
| ! | AATTTATGTATTGAAGGCAA+TGG | + | chr2_1:68530614-68530633 | Msa0220330:intron | 25.0% |
| !!! | TTATGTTGTTTTGCTATGTA+TGG | + | chr2_1:68530993-68531012 | Msa0220330:intron | 25.0% |
| ! | GTGAAACATCTAAACAAATT+CGG | - | chr2_1:68531143-68531162 | None:intergenic | 25.0% |
| !! | ATTGCATTTTGAATCCTAAA+TGG | + | chr2_1:68531227-68531246 | Msa0220330:intron | 25.0% |
| !!! | GCTTTTCAACTTTTTTACAA+TGG | + | chr2_1:68531356-68531375 | Msa0220330:intron | 25.0% |
| ATTGATGGAGTGAAGAAAAT+TGG | + | chr2_1:68529198-68529217 | Msa0220330:CDS | 30.0% | |
| GAATGTATTGAAGTTATGTG+TGG | + | chr2_1:68529222-68529241 | Msa0220330:CDS | 30.0% | |
| ATAAAACGCCAACATAAACA+CGG | - | chr2_1:68529472-68529491 | None:intergenic | 30.0% | |
| ATTTGTCAAAGCGAAAACTT+TGG | + | chr2_1:68529726-68529745 | Msa0220330:intron | 30.0% | |
| ATTACATGATTCTAGACAAG+TGG | + | chr2_1:68529751-68529770 | Msa0220330:intron | 30.0% | |
| TTACATGATTCTAGACAAGT+GGG | + | chr2_1:68529752-68529771 | Msa0220330:intron | 30.0% | |
| ! | AAAGTCAATGAAGTCTGTTT+TGG | + | chr2_1:68529844-68529863 | Msa0220330:intron | 30.0% |
| !!! | CTGTTTTGGTTTGTTATGTA+CGG | + | chr2_1:68529858-68529877 | Msa0220330:intron | 30.0% |
| TTATGTACGGTACTACTATA+AGG | + | chr2_1:68529871-68529890 | Msa0220330:intron | 30.0% | |
| GATAGAGGGAAATATAAACA+TGG | - | chr2_1:68529965-68529984 | None:intergenic | 30.0% | |
| GAAATGGAAGAACAATATCT+GGG | + | chr2_1:68530232-68530251 | Msa0220330:CDS | 30.0% | |
| GTTCCCATAAATCCAATAAT+GGG | + | chr2_1:68530336-68530355 | Msa0220330:CDS | 30.0% | |
| ATACTTGTCATATGGAAGAT+CGG | - | chr2_1:68530489-68530508 | None:intergenic | 30.0% | |
| GATTGAACATACTTGTCATA+TGG | - | chr2_1:68530497-68530516 | None:intergenic | 30.0% | |
| AAGTATGTTCAATCTGTTGT+AGG | + | chr2_1:68530503-68530522 | Msa0220330:intron | 30.0% | |
| ! | GCCTTTAAAAAAGTAGTAGT+CGG | + | chr2_1:68530950-68530969 | Msa0220330:intron | 30.0% |
| !!! | ACCGACTACTACTTTTTTAA+AGG | - | chr2_1:68530954-68530973 | None:intergenic | 30.0% |
| GTTACATTACCTATTATGCA+TGG | + | chr2_1:68531045-68531064 | Msa0220330:intron | 30.0% | |
| TTAAATCAGCCATGCATAAT+AGG | - | chr2_1:68531057-68531076 | None:intergenic | 30.0% | |
| CAAATTCGGACAAACATAAA+AGG | - | chr2_1:68531129-68531148 | None:intergenic | 30.0% | |
| TCTGTATAGAAGATTCAAGT+TGG | + | chr2_1:68531270-68531289 | Msa0220330:intron | 30.0% | |
| ! | CTGTATAGAAGATTCAAGTT+GGG | + | chr2_1:68531271-68531290 | Msa0220330:intron | 30.0% |
| !! | TGTATAGAAGATTCAAGTTG+GGG | + | chr2_1:68531272-68531291 | Msa0220330:intron | 30.0% |
| TGTTCAGTGATGAAGAGTTA+AGG | + | chr2_1:68529172-68529191 | Msa0220330:CDS | 35.0% | |
| GTTCAGTGATGAAGAGTTAA+GGG | + | chr2_1:68529173-68529192 | Msa0220330:CDS | 35.0% | |
| GAAGAGTTAAGGGATATTGA+TGG | + | chr2_1:68529183-68529202 | Msa0220330:CDS | 35.0% | |
| GGTTGTACTAGTCATAGATA+CGG | + | chr2_1:68529243-68529262 | Msa0220330:CDS | 35.0% | |
| ! | AGGCTTAGGGTTTTTGTTAA+TGG | + | chr2_1:68529279-68529298 | Msa0220330:CDS | 35.0% |
| ! | TCAAGTATGAGTGTTGTGTT+CGG | + | chr2_1:68529443-68529462 | Msa0220330:intron | 35.0% |
| TATGAACTCTGTTGTGATGT+TGG | + | chr2_1:68529677-68529696 | Msa0220330:intron | 35.0% | |
| TAGCATGTTATGTTGACGTT+TGG | + | chr2_1:68529814-68529833 | Msa0220330:intron | 35.0% | |
| AATTCTTACATTGTGGCTAG+TGG | + | chr2_1:68529930-68529949 | Msa0220330:intron | 35.0% | |
| GGAAATGGAAGAACAATATC+TGG | + | chr2_1:68530231-68530250 | Msa0220330:CDS | 35.0% | |
| AATATCTGGGTAACAGTTGA+TGG | + | chr2_1:68530245-68530264 | Msa0220330:CDS | 35.0% | |
| CAAGCATTAAAAACAGCCAA+TGG | + | chr2_1:68530314-68530333 | Msa0220330:CDS | 35.0% | |
| ATTGGATTTATGGGAACCAT+TGG | - | chr2_1:68530333-68530352 | None:intergenic | 35.0% | |
| GGTTCCCATAAATCCAATAA+TGG | + | chr2_1:68530335-68530354 | Msa0220330:CDS | 35.0% | |
| CTGCCCATTATTGGATTTAT+GGG | - | chr2_1:68530342-68530361 | None:intergenic | 35.0% | |
| ATGCTTTAGCTGATCCTAAT+TGG | + | chr2_1:68530456-68530475 | Msa0220330:CDS | 35.0% | |
| AGATCGGAACATTTCCAATT+AGG | - | chr2_1:68530473-68530492 | None:intergenic | 35.0% | |
| ATTATCACAAGATAAGGGCT+AGG | - | chr2_1:68530559-68530578 | None:intergenic | 35.0% | |
| ATGTGGTCGAAGATATAACT+TGG | - | chr2_1:68530653-68530672 | None:intergenic | 35.0% | |
| TTGTCAAGACACTAAACTCT+AGG | - | chr2_1:68530844-68530863 | None:intergenic | 35.0% | |
| TGTCTTGACAATGCAACTTT+GGG | + | chr2_1:68530853-68530872 | Msa0220330:intron | 35.0% | |
| ! | TTCATTGATTGCTGCATGAA+CGG | + | chr2_1:68530909-68530928 | Msa0220330:intron | 35.0% |
| ! | TTTAAAGGCATGACCAAGAT+TGG | - | chr2_1:68530939-68530958 | None:intergenic | 35.0% |
| GTATCGTGAAAGAACTATCA+CGG | + | chr2_1:68531095-68531114 | Msa0220330:intron | 35.0% | |
| ! | TGTGATGATGAAGAAGAAAG+AGG | + | chr2_1:68531447-68531466 | Msa0220330:CDS | 35.0% |
| TTGTAAAGTCCATACAAGTC+TGG | - | chr2_1:68531578-68531597 | None:intergenic | 35.0% | |
| AGACTTGTATGGACTTTACA+AGG | + | chr2_1:68531577-68531596 | Msa0220330:CDS | 35.0% | |
| TTGATATTGGCACGTGTCAT+TGG | + | chr2_1:68529600-68529619 | Msa0220330:intron | 40.0% | |
| TGTCATTGGCACATTGGATT+TGG | + | chr2_1:68529614-68529633 | Msa0220330:intron | 40.0% | |
| ATTGGCACATTGGATTTGGA+TGG | + | chr2_1:68529618-68529637 | Msa0220330:intron | 40.0% | |
| ! | ATTCTGGAAGAGAAACAGCT+AGG | + | chr2_1:68530210-68530229 | Msa0220330:CDS | 40.0% |
| GAAGAGAAACAGCTAGGAAA+TGG | + | chr2_1:68530216-68530235 | Msa0220330:CDS | 40.0% | |
| CCTGCCCATTATTGGATTTA+TGG | - | chr2_1:68530343-68530362 | None:intergenic | 40.0% | |
| !! | CCATAAATCCAATAATGGGC+AGG | + | chr2_1:68530340-68530359 | Msa0220330:CDS | 40.0% |
| TACAGCAGATAAACTCGTCA+CGG | - | chr2_1:68530373-68530392 | None:intergenic | 40.0% | |
| !! | ATTCCTCTTTAGTTCTCAGG+CGG | - | chr2_1:68530421-68530440 | None:intergenic | 40.0% |
| !! | GACATTCCTCTTTAGTTCTC+AGG | - | chr2_1:68530424-68530443 | None:intergenic | 40.0% |
| ! | TAGGATCAGCTAAAGCATCA+TGG | - | chr2_1:68530454-68530473 | None:intergenic | 40.0% |
| GTGTCTTGACAATGCAACTT+TGG | + | chr2_1:68530852-68530871 | Msa0220330:intron | 40.0% | |
| GTCTTGACAATGCAACTTTG+GGG | + | chr2_1:68530854-68530873 | Msa0220330:intron | 40.0% | |
| TAACCGTGACAGTTCTTTCA+GGG | - | chr2_1:68531029-68531048 | None:intergenic | 40.0% | |
| GGCAAGTGCAATCTGAAAAA+CGG | - | chr2_1:68531557-68531576 | None:intergenic | 40.0% | |
| !! | AACGGGTTAGAGAGAGAAAG+TGG | + | chr2_1:68529141-68529160 | Msa0220330:CDS | 45.0% |
| !! | ACGGGTTAGAGAGAGAAAGT+GGG | + | chr2_1:68529142-68529161 | Msa0220330:CDS | 45.0% |
| CATAGATACGGTGATGCTGT+TGG | + | chr2_1:68529255-68529274 | Msa0220330:CDS | 45.0% | |
| TGATGCTGTTGGAAGGCTTA+GGG | + | chr2_1:68529266-68529285 | Msa0220330:CDS | 45.0% | |
| ATCACTTGTGAATGCATCCC+TGG | + | chr2_1:68529312-68529331 | Msa0220330:CDS | 45.0% | |
| !! | TTCGGTGTCCGTGTTTATGT+TGG | + | chr2_1:68529461-68529480 | Msa0220330:intron | 45.0% |
| GCAGGAGTCAACTTGTCTAT+TGG | - | chr2_1:68530176-68530195 | None:intergenic | 45.0% | |
| GAATGTTTCTCAAACGCAGC+AGG | - | chr2_1:68530194-68530213 | None:intergenic | 45.0% | |
| GCTGCGTTTGAGAAACATTC+TGG | + | chr2_1:68530194-68530213 | Msa0220330:CDS | 45.0% | |
| ! | CTAGATGTAACAAAGAGCGC+AGG | + | chr2_1:68530393-68530412 | Msa0220330:intron | 45.0% |
| ! | CAGCTAAAGCATCATGGTGA+CGG | - | chr2_1:68530448-68530467 | None:intergenic | 45.0% |
| ACAAGATAAGGGCTAGGCAA+GGG | - | chr2_1:68530553-68530572 | None:intergenic | 45.0% | |
| CGACCACATTGTAGTAACTC+TGG | + | chr2_1:68530664-68530683 | Msa0220330:intron | 45.0% | |
| TGGCCAGAGTTACTACAATG+TGG | - | chr2_1:68530670-68530689 | None:intergenic | 45.0% | |
| CTTATCCCACTAAGTGGGAT+CGG | - | chr2_1:68530776-68530795 | None:intergenic | 45.0% | |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr2_1:68530781-68530800 | None:intergenic | 45.0% |
| CATGAACGGTGTTCCAATCT+TGG | + | chr2_1:68530923-68530942 | Msa0220330:intron | 45.0% | |
| GTAACCGTGACAGTTCTTTC+AGG | - | chr2_1:68531030-68531049 | None:intergenic | 45.0% | |
| ! | ACAAGAAGTGCAACCTTTGC+AGG | - | chr2_1:68531511-68531530 | None:intergenic | 45.0% |
| TGCACTTCTTGTGTGTGCTT+TGG | + | chr2_1:68531519-68531538 | Msa0220330:CDS | 45.0% | |
| TTGCACTTGCCAGACTTGTA+TGG | + | chr2_1:68531566-68531585 | Msa0220330:CDS | 45.0% | |
| GATACGGTGATGCTGTTGGA+AGG | + | chr2_1:68529259-68529278 | Msa0220330:CDS | 50.0% | |
| GTGATGCTGTTGGAAGGCTT+AGG | + | chr2_1:68529265-68529284 | Msa0220330:CDS | 50.0% | |
| AAGGACCTTCTTCACAGCCA+GGG | - | chr2_1:68529332-68529351 | None:intergenic | 50.0% | |
| AAAGGACCTTCTTCACAGCC+AGG | - | chr2_1:68529333-68529352 | None:intergenic | 50.0% | |
| !! | GGTAACAGTTGATGGCGAGA+AGG | + | chr2_1:68530253-68530272 | Msa0220330:CDS | 50.0% |
| AGCAGATAAACTCGTCACGG+TGG | - | chr2_1:68530370-68530389 | None:intergenic | 50.0% | |
| GTTCCGCCTGAGAACTAAAG+AGG | + | chr2_1:68530415-68530434 | Msa0220330:CDS | 50.0% | |
| CACAAGATAAGGGCTAGGCA+AGG | - | chr2_1:68530554-68530573 | None:intergenic | 50.0% | |
| TGTTAGCCGATCCCACTTAG+TGG | + | chr2_1:68530767-68530786 | Msa0220330:intron | 50.0% | |
| GTTAGCCGATCCCACTTAGT+GGG | + | chr2_1:68530768-68530787 | Msa0220330:intron | 50.0% | |
| CGATCCCACTTAGTGGGATA+AGG | + | chr2_1:68530774-68530793 | Msa0220330:intron | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr2_1:68530782-68530801 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr2_1:68530779-68530798 | Msa0220330:intron | 50.0% | |
| CTGCCCTGAAAGAACTGTCA+CGG | + | chr2_1:68531023-68531042 | Msa0220330:intron | 50.0% | |
| ACTCATTCTGCAGCCTGCAA+AGG | + | chr2_1:68531495-68531514 | Msa0220330:CDS | 50.0% | |
| TGCATCCCTGGCTGTGAAGA+AGG | + | chr2_1:68529324-68529343 | Msa0220330:CDS | 55.0% | |
| ! | GGCACGTGTCATTGGCACAT+TGG | + | chr2_1:68529608-68529627 | Msa0220330:intron | 55.0% |
| GGCAGTCGCAGAGTTTACAG+AGG | + | chr2_1:68531468-68531487 | Msa0220330:CDS | 55.0% | |
| GTGGCACGCCTGCCCATTAT+TGG | - | chr2_1:68530351-68530370 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 68529135 | 68531614 | 68529135 | ID=Msa0220330;Name=Msa0220330 |
| chr2_1 | mRNA | 68529135 | 68531614 | 68529135 | ID=Msa0220330-mRNA-1;Parent=Msa0220330;Name=Msa0220330-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0|0|1|0.33|0.5|4|0|224 |
| chr2_1 | exon | 68529135 | 68529345 | 68529135 | ID=Msa0220330-mRNA-1:exon:19404;Parent=Msa0220330-mRNA-1 |
| chr2_1 | exon | 68530180 | 68530378 | 68530180 | ID=Msa0220330-mRNA-1:exon:19405;Parent=Msa0220330-mRNA-1 |
| chr2_1 | exon | 68530415 | 68530504 | 68530415 | ID=Msa0220330-mRNA-1:exon:19406;Parent=Msa0220330-mRNA-1 |
| chr2_1 | exon | 68531440 | 68531614 | 68531440 | ID=Msa0220330-mRNA-1:exon:19407;Parent=Msa0220330-mRNA-1 |
| chr2_1 | CDS | 68529135 | 68529345 | 68529135 | ID=Msa0220330-mRNA-1:cds;Parent=Msa0220330-mRNA-1 |
| chr2_1 | CDS | 68530180 | 68530378 | 68530180 | ID=Msa0220330-mRNA-1:cds;Parent=Msa0220330-mRNA-1 |
| chr2_1 | CDS | 68530415 | 68530504 | 68530415 | ID=Msa0220330-mRNA-1:cds;Parent=Msa0220330-mRNA-1 |
| chr2_1 | CDS | 68531440 | 68531614 | 68531440 | ID=Msa0220330-mRNA-1:cds;Parent=Msa0220330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
