Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220780 | RHN75739.1 | 84.358 | 179 | 17 | 3 | 1 | 176 | 1 | 171 | 2.37e-99 | 294 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220780 | sp|F4JIJ7|BH162_ARATH | 40.994 | 161 | 85 | 3 | 12 | 163 | 11 | 170 | 1.28e-30 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220780 | A0A396JBT3 | 84.358 | 179 | 17 | 3 | 1 | 176 | 1 | 171 | 1.13e-99 | 294 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0220780 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220780 | MtrunA17_Chr2g0324511 | 84.358 | 179 | 17 | 3 | 1 | 176 | 1 | 171 | 2.18e-103 | 294 |
| Msa0220780 | MtrunA17_Chr2g0324521 | 86.154 | 130 | 17 | 1 | 45 | 174 | 2 | 130 | 1.37e-78 | 229 |
| Msa0220780 | MtrunA17_Chr2g0324571 | 85.600 | 125 | 13 | 3 | 45 | 166 | 2 | 124 | 6.49e-70 | 207 |
| Msa0220780 | MtrunA17_Chr4g0040201 | 61.677 | 167 | 50 | 5 | 1 | 160 | 1 | 160 | 7.95e-64 | 195 |
| Msa0220780 | MtrunA17_Chr2g0282341 | 38.053 | 113 | 69 | 1 | 48 | 160 | 4 | 115 | 1.80e-24 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220780 | AT4G20970.1 | 40.994 | 161 | 85 | 3 | 12 | 163 | 11 | 170 | 1.30e-31 | 113 |
| Msa0220780 | AT1G10585.1 | 30.719 | 153 | 95 | 3 | 11 | 162 | 13 | 155 | 4.35e-14 | 67.0 |
| Msa0220780 | AT1G10586.1 | 27.451 | 153 | 100 | 3 | 11 | 162 | 13 | 155 | 1.60e-12 | 62.8 |
Find 31 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCTCTTCAAATTCTTCTT+TGG | 0.234992 | 2_1:-69233336 | Msa0220780:CDS |
| GGAGAAGAAAGAAAGTTTAA+TGG | 0.269701 | 2_1:-69233537 | Msa0220780:CDS |
| GGTGGCTGCTCGAGTTCTTC+TGG | 0.283108 | 2_1:-69233491 | Msa0220780:CDS |
| GAGAGTTGAGTTTAGAAAAG+AGG | 0.353043 | 2_1:+69234373 | None:intergenic |
| GAGAAGAAAGAAAGTTTAAT+GGG | 0.362015 | 2_1:-69233536 | Msa0220780:CDS |
| CTAAGTTTATATTTGTCTCT+AGG | 0.365336 | 2_1:+69233564 | None:intergenic |
| TAGAAAAGAGGATCTTCATT+TGG | 0.386590 | 2_1:+69234385 | None:intergenic |
| AACGATCTTTCTTTCGACTT+TGG | 0.395490 | 2_1:+69234425 | None:intergenic |
| TCTTCAAATTCTTCTTTGGC+TGG | 0.403407 | 2_1:-69233332 | Msa0220780:CDS |
| TAACTTCACAGAAAATAAAA+TGG | 0.408004 | 2_1:+69233390 | None:intergenic |
| CTTTCGACTTTGGTTGAAGA+AGG | 0.411324 | 2_1:+69234435 | None:intergenic |
| ATAGCCTCATCTACTTGATC+AGG | 0.429867 | 2_1:+69233602 | None:intergenic |
| AAAATAGAGATTCATGAAAT+GGG | 0.456591 | 2_1:-69233452 | Msa0220780:CDS |
| TCTTCATACCGTGCATGCTC+AGG | 0.472764 | 2_1:-69233300 | Msa0220780:CDS |
| ATCACCTTTGGATTATAGCT+AGG | 0.496982 | 2_1:+69234345 | None:intergenic |
| AAGAAGAGATCGCGTGGTGG+TGG | 0.500238 | 2_1:-69233509 | Msa0220780:CDS |
| TCACCTTTGGATTATAGCTA+GGG | 0.515824 | 2_1:+69234346 | None:intergenic |
| TCATCTACTTGATCAGGTAA+TGG | 0.522136 | 2_1:+69233608 | None:intergenic |
| AATGTTATTTGCATGTGCAT+AGG | 0.530273 | 2_1:+69233251 | None:intergenic |
| TACAAGTCATTGTAACATGT+GGG | 0.544345 | 2_1:-69233421 | Msa0220780:CDS |
| GACAAATATAAACTTAGCAA+AGG | 0.562346 | 2_1:-69233558 | Msa0220780:CDS |
| CTACAAGTCATTGTAACATG+TGG | 0.589705 | 2_1:-69233422 | Msa0220780:CDS |
| TATATATACCTGAGCATGCA+CGG | 0.590008 | 2_1:+69233292 | None:intergenic |
| TCTCCCTAGCTATAATCCAA+AGG | 0.625430 | 2_1:-69234349 | Msa0220780:intron |
| TGTTACAATGACTTGTAGAG+TGG | 0.628096 | 2_1:+69233427 | None:intergenic |
| ATTACCTGATCAAGTAGATG+AGG | 0.636526 | 2_1:-69233606 | Msa0220780:CDS |
| TCAATGGATCAAAATCAGCA+AGG | 0.641836 | 2_1:-69234465 | Msa0220780:CDS |
| GGAAACAAGAAGAGATCGCG+TGG | 0.678742 | 2_1:-69233515 | Msa0220780:CDS |
| ACAAGTCATTGTAACATGTG+GGG | 0.680252 | 2_1:-69233420 | Msa0220780:CDS |
| AACAAGAAGAGATCGCGTGG+TGG | 0.717188 | 2_1:-69233512 | Msa0220780:CDS |
| ACTGCATGAAGAAAACGTCG+AGG | 0.726422 | 2_1:-69233360 | Msa0220780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTTTTTTGTTATGT+AGG | + | chr2_1:69233844-69233863 | None:intergenic | 10.0% |
| !!! | TAATTTTTTTTTTGTTATGT+AGG | + | chr2_1:69233844-69233863 | None:intergenic | 10.0% |
| !! | AACACATATACTTATTAATT+TGG | - | chr2_1:69234044-69234063 | Msa0220780:intron | 15.0% |
| !! | AACACATATACTTATTAATT+TGG | - | chr2_1:69234044-69234063 | Msa0220780:intron | 15.0% |
| !! | CATATATGTATATTCATTTG+AGG | - | chr2_1:69233414-69233433 | Msa0220780:CDS | 20.0% |
| !! | TGACAAAAATAAAGAGAAAA+TGG | + | chr2_1:69233799-69233818 | None:intergenic | 20.0% |
| !! | CCTATATGAAATGAATATAT+AGG | + | chr2_1:69234002-69234021 | None:intergenic | 20.0% |
| !! | CCTATATATTCATTTCATAT+AGG | - | chr2_1:69233999-69234018 | Msa0220780:intron | 20.0% |
| !!! | TGTTATTTTTCATTTAATGC+AGG | - | chr2_1:69234067-69234086 | Msa0220780:intron | 20.0% |
| !!! | ATTTCATGAATCTCTATTTT+TGG | + | chr2_1:69234257-69234276 | None:intergenic | 20.0% |
| !! | AAAAATAGAGATTCATGAAA+TGG | - | chr2_1:69234256-69234275 | Msa0220780:intron | 20.0% |
| !! | AAAATAGAGATTCATGAAAT+GGG | - | chr2_1:69234257-69234276 | Msa0220780:intron | 20.0% |
| !! | TAACTTCACAGAAAATAAAA+TGG | + | chr2_1:69234322-69234341 | None:intergenic | 20.0% |
| !! | CATATATGTATATTCATTTG+AGG | - | chr2_1:69233414-69233433 | Msa0220780:CDS | 20.0% |
| !! | TGACAAAAATAAAGAGAAAA+TGG | + | chr2_1:69233799-69233818 | None:intergenic | 20.0% |
| !! | CCTATATGAAATGAATATAT+AGG | + | chr2_1:69234002-69234021 | None:intergenic | 20.0% |
| !! | CCTATATATTCATTTCATAT+AGG | - | chr2_1:69233999-69234018 | Msa0220780:intron | 20.0% |
| !!! | TGTTATTTTTCATTTAATGC+AGG | - | chr2_1:69234067-69234086 | Msa0220780:intron | 20.0% |
| !!! | ATTTCATGAATCTCTATTTT+TGG | + | chr2_1:69234257-69234276 | None:intergenic | 20.0% |
| !! | AAAAATAGAGATTCATGAAA+TGG | - | chr2_1:69234256-69234275 | Msa0220780:intron | 20.0% |
| !! | AAAATAGAGATTCATGAAAT+GGG | - | chr2_1:69234257-69234276 | Msa0220780:intron | 20.0% |
| !! | TAACTTCACAGAAAATAAAA+TGG | + | chr2_1:69234322-69234341 | None:intergenic | 20.0% |
| ! | ATATATGCATATGAATGTGA+TGG | + | chr2_1:69233401-69233420 | None:intergenic | 25.0% |
| !!! | CAATGTCGTTTTTTTTTTAC+AGG | + | chr2_1:69233465-69233484 | None:intergenic | 25.0% |
| ! | TATATAGTTACCAATCTCAA+AGG | + | chr2_1:69233493-69233512 | None:intergenic | 25.0% |
| !!! | AATTGGTTTTACATCAACAA+CGG | + | chr2_1:69233587-69233606 | None:intergenic | 25.0% |
| ! | TGTACATTCTAAGTGTAAAT+TGG | + | chr2_1:69233604-69233623 | None:intergenic | 25.0% |
| ! | AATTTACACTTAGAATGTAC+AGG | - | chr2_1:69233603-69233622 | Msa0220780:CDS | 25.0% |
| ! | ATTTACACTTAGAATGTACA+GGG | - | chr2_1:69233604-69233623 | Msa0220780:CDS | 25.0% |
| !! | CTCGGTTCTAATATTAAAAA+TGG | - | chr2_1:69233648-69233667 | Msa0220780:intron | 25.0% |
| ! | AAAGAGAAAATGGATAAGTT+AGG | + | chr2_1:69233789-69233808 | None:intergenic | 25.0% |
| ! | CTAAGTTTATATTTGTCTCT+AGG | + | chr2_1:69234148-69234167 | None:intergenic | 25.0% |
| ! | GACAAATATAAACTTAGCAA+AGG | - | chr2_1:69234151-69234170 | Msa0220780:intron | 25.0% |
| ! | GAGAAGAAAGAAAGTTTAAT+GGG | - | chr2_1:69234173-69234192 | Msa0220780:intron | 25.0% |
| ! | TATCTCTTCAAATTCTTCTT+TGG | - | chr2_1:69234373-69234392 | Msa0220780:CDS | 25.0% |
| ! | ATATATGCATATGAATGTGA+TGG | + | chr2_1:69233401-69233420 | None:intergenic | 25.0% |
| !!! | CAATGTCGTTTTTTTTTTAC+AGG | + | chr2_1:69233465-69233484 | None:intergenic | 25.0% |
| ! | TATATAGTTACCAATCTCAA+AGG | + | chr2_1:69233493-69233512 | None:intergenic | 25.0% |
| !!! | AATTGGTTTTACATCAACAA+CGG | + | chr2_1:69233587-69233606 | None:intergenic | 25.0% |
| ! | TGTACATTCTAAGTGTAAAT+TGG | + | chr2_1:69233604-69233623 | None:intergenic | 25.0% |
| ! | AATTTACACTTAGAATGTAC+AGG | - | chr2_1:69233603-69233622 | Msa0220780:CDS | 25.0% |
| ! | ATTTACACTTAGAATGTACA+GGG | - | chr2_1:69233604-69233623 | Msa0220780:CDS | 25.0% |
| !! | CTCGGTTCTAATATTAAAAA+TGG | - | chr2_1:69233648-69233667 | Msa0220780:intron | 25.0% |
| ! | AAAGAGAAAATGGATAAGTT+AGG | + | chr2_1:69233789-69233808 | None:intergenic | 25.0% |
| ! | CTAAGTTTATATTTGTCTCT+AGG | + | chr2_1:69234148-69234167 | None:intergenic | 25.0% |
| ! | GACAAATATAAACTTAGCAA+AGG | - | chr2_1:69234151-69234170 | Msa0220780:intron | 25.0% |
| ! | GAGAAGAAAGAAAGTTTAAT+GGG | - | chr2_1:69234173-69234192 | Msa0220780:intron | 25.0% |
| ! | TATCTCTTCAAATTCTTCTT+TGG | - | chr2_1:69234373-69234392 | Msa0220780:CDS | 25.0% |
| GAAAGATCGTTGAGAAAAAT+AGG | - | chr2_1:69233296-69233315 | Msa0220780:CDS | 30.0% | |
| TAGAAAAGAGGATCTTCATT+TGG | + | chr2_1:69233327-69233346 | None:intergenic | 30.0% | |
| GAAATTAAACAGATCACCTT+TGG | + | chr2_1:69233379-69233398 | None:intergenic | 30.0% | |
| ! | TACATGACTCTTTGTTGTAT+TGG | - | chr2_1:69233551-69233570 | Msa0220780:CDS | 30.0% |
| ! | AGTCTCCAATTTTATTGGAA+CGG | + | chr2_1:69233630-69233649 | None:intergenic | 30.0% |
| TTCCAATAAAATTGGAGACT+CGG | - | chr2_1:69233630-69233649 | Msa0220780:intron | 30.0% | |
| !!! | TTTTGTTGTTGATAGATGTG+TGG | - | chr2_1:69233757-69233776 | Msa0220780:intron | 30.0% |
| !! | TTTGTTGTTGATAGATGTGT+GGG | - | chr2_1:69233758-69233777 | Msa0220780:intron | 30.0% |
| ATATATAGGTACTCTACTTG+TGG | + | chr2_1:69233988-69234007 | None:intergenic | 30.0% | |
| GGAGAAGAAAGAAAGTTTAA+TGG | - | chr2_1:69234172-69234191 | Msa0220780:intron | 30.0% | |
| TACAAGTCATTGTAACATGT+GGG | - | chr2_1:69234288-69234307 | Msa0220780:intron | 30.0% | |
| ! | AATGTTATTTGCATGTGCAT+AGG | + | chr2_1:69234461-69234480 | None:intergenic | 30.0% |
| GAAAGATCGTTGAGAAAAAT+AGG | - | chr2_1:69233296-69233315 | Msa0220780:CDS | 30.0% | |
| TAGAAAAGAGGATCTTCATT+TGG | + | chr2_1:69233327-69233346 | None:intergenic | 30.0% | |
| GAAATTAAACAGATCACCTT+TGG | + | chr2_1:69233379-69233398 | None:intergenic | 30.0% | |
| ! | TACATGACTCTTTGTTGTAT+TGG | - | chr2_1:69233551-69233570 | Msa0220780:CDS | 30.0% |
| ! | AGTCTCCAATTTTATTGGAA+CGG | + | chr2_1:69233630-69233649 | None:intergenic | 30.0% |
| TTCCAATAAAATTGGAGACT+CGG | - | chr2_1:69233630-69233649 | Msa0220780:intron | 30.0% | |
| !!! | TTTTGTTGTTGATAGATGTG+TGG | - | chr2_1:69233757-69233776 | Msa0220780:intron | 30.0% |
| !! | TTTGTTGTTGATAGATGTGT+GGG | - | chr2_1:69233758-69233777 | Msa0220780:intron | 30.0% |
| ATATATAGGTACTCTACTTG+TGG | + | chr2_1:69233988-69234007 | None:intergenic | 30.0% | |
| GGAGAAGAAAGAAAGTTTAA+TGG | - | chr2_1:69234172-69234191 | Msa0220780:intron | 30.0% | |
| TACAAGTCATTGTAACATGT+GGG | - | chr2_1:69234288-69234307 | Msa0220780:intron | 30.0% | |
| ! | AATGTTATTTGCATGTGCAT+AGG | + | chr2_1:69234461-69234480 | None:intergenic | 30.0% |
| AACGATCTTTCTTTCGACTT+TGG | + | chr2_1:69233287-69233306 | None:intergenic | 35.0% | |
| GAGAGTTGAGTTTAGAAAAG+AGG | + | chr2_1:69233339-69233358 | None:intergenic | 35.0% | |
| TCACCTTTGGATTATAGCTA+GGG | + | chr2_1:69233366-69233385 | None:intergenic | 35.0% | |
| ATCACCTTTGGATTATAGCT+AGG | + | chr2_1:69233367-69233386 | None:intergenic | 35.0% | |
| !! | CATTGAGTTTCCTTTGAGAT+TGG | - | chr2_1:69233480-69233499 | Msa0220780:CDS | 35.0% |
| ! | AACCGAGTCTCCAATTTTAT+TGG | + | chr2_1:69233635-69233654 | None:intergenic | 35.0% |
| GAGTATAATTGTTGGGATCT+AGG | + | chr2_1:69233871-69233890 | None:intergenic | 35.0% | |
| TAATTGAGGACCCCATAAAT+TGG | - | chr2_1:69233904-69233923 | Msa0220780:intron | 35.0% | |
| CATATAGGTTCACTTCTTCT+TGG | - | chr2_1:69234014-69234033 | Msa0220780:intron | 35.0% | |
| TCATCTACTTGATCAGGTAA+TGG | + | chr2_1:69234104-69234123 | None:intergenic | 35.0% | |
| ATTACCTGATCAAGTAGATG+AGG | - | chr2_1:69234103-69234122 | Msa0220780:intron | 35.0% | |
| ! | TGTTACAATGACTTGTAGAG+TGG | + | chr2_1:69234285-69234304 | None:intergenic | 35.0% |
| CTACAAGTCATTGTAACATG+TGG | - | chr2_1:69234287-69234306 | Msa0220780:intron | 35.0% | |
| ACAAGTCATTGTAACATGTG+GGG | - | chr2_1:69234289-69234308 | Msa0220780:intron | 35.0% | |
| TCTTCAAATTCTTCTTTGGC+TGG | - | chr2_1:69234377-69234396 | Msa0220780:CDS | 35.0% | |
| TATATATACCTGAGCATGCA+CGG | + | chr2_1:69234420-69234439 | None:intergenic | 35.0% | |
| AACGATCTTTCTTTCGACTT+TGG | + | chr2_1:69233287-69233306 | None:intergenic | 35.0% | |
| GAGAGTTGAGTTTAGAAAAG+AGG | + | chr2_1:69233339-69233358 | None:intergenic | 35.0% | |
| TCACCTTTGGATTATAGCTA+GGG | + | chr2_1:69233366-69233385 | None:intergenic | 35.0% | |
| ATCACCTTTGGATTATAGCT+AGG | + | chr2_1:69233367-69233386 | None:intergenic | 35.0% | |
| !! | CATTGAGTTTCCTTTGAGAT+TGG | - | chr2_1:69233480-69233499 | Msa0220780:CDS | 35.0% |
| ! | AACCGAGTCTCCAATTTTAT+TGG | + | chr2_1:69233635-69233654 | None:intergenic | 35.0% |
| GAGTATAATTGTTGGGATCT+AGG | + | chr2_1:69233871-69233890 | None:intergenic | 35.0% | |
| TAATTGAGGACCCCATAAAT+TGG | - | chr2_1:69233904-69233923 | Msa0220780:intron | 35.0% | |
| CATATAGGTTCACTTCTTCT+TGG | - | chr2_1:69234014-69234033 | Msa0220780:intron | 35.0% | |
| TCATCTACTTGATCAGGTAA+TGG | + | chr2_1:69234104-69234123 | None:intergenic | 35.0% | |
| ATTACCTGATCAAGTAGATG+AGG | - | chr2_1:69234103-69234122 | Msa0220780:intron | 35.0% | |
| ! | TGTTACAATGACTTGTAGAG+TGG | + | chr2_1:69234285-69234304 | None:intergenic | 35.0% |
| CTACAAGTCATTGTAACATG+TGG | - | chr2_1:69234287-69234306 | Msa0220780:intron | 35.0% | |
| ACAAGTCATTGTAACATGTG+GGG | - | chr2_1:69234289-69234308 | Msa0220780:intron | 35.0% | |
| TCTTCAAATTCTTCTTTGGC+TGG | - | chr2_1:69234377-69234396 | Msa0220780:CDS | 35.0% | |
| TATATATACCTGAGCATGCA+CGG | + | chr2_1:69234420-69234439 | None:intergenic | 35.0% | |
| CTTTCGACTTTGGTTGAAGA+AGG | + | chr2_1:69233277-69233296 | None:intergenic | 40.0% | |
| TCTCCCTAGCTATAATCCAA+AGG | - | chr2_1:69233360-69233379 | Msa0220780:CDS | 40.0% | |
| !! | TCTTTGTTGTATTGGCTAGC+TGG | - | chr2_1:69233559-69233578 | Msa0220780:CDS | 40.0% |
| !! | CTTTGTTGTATTGGCTAGCT+GGG | - | chr2_1:69233560-69233579 | Msa0220780:CDS | 40.0% |
| ! | TGTTGATAGATGTGTGGGTT+TGG | - | chr2_1:69233763-69233782 | Msa0220780:intron | 40.0% |
| GGGGTACGAGTATAATTGTT+GGG | + | chr2_1:69233878-69233897 | None:intergenic | 40.0% | |
| ! | AGGGGTACGAGTATAATTGT+TGG | + | chr2_1:69233879-69233898 | None:intergenic | 40.0% |
| CGTACCCCTACAAATAATTG+AGG | - | chr2_1:69233890-69233909 | Msa0220780:intron | 40.0% | |
| GGGTCCTCAATTATTTGTAG+GGG | + | chr2_1:69233897-69233916 | None:intergenic | 40.0% | |
| GGGGTCCTCAATTATTTGTA+GGG | + | chr2_1:69233898-69233917 | None:intergenic | 40.0% | |
| TGGGGTCCTCAATTATTTGT+AGG | + | chr2_1:69233899-69233918 | None:intergenic | 40.0% | |
| CTTGTGGTATAGTACACTCA+AGG | + | chr2_1:69233972-69233991 | None:intergenic | 40.0% | |
| ATAGCCTCATCTACTTGATC+AGG | + | chr2_1:69234110-69234129 | None:intergenic | 40.0% | |
| CTTTCGACTTTGGTTGAAGA+AGG | + | chr2_1:69233277-69233296 | None:intergenic | 40.0% | |
| TCTCCCTAGCTATAATCCAA+AGG | - | chr2_1:69233360-69233379 | Msa0220780:CDS | 40.0% | |
| !! | TCTTTGTTGTATTGGCTAGC+TGG | - | chr2_1:69233559-69233578 | Msa0220780:CDS | 40.0% |
| !! | CTTTGTTGTATTGGCTAGCT+GGG | - | chr2_1:69233560-69233579 | Msa0220780:CDS | 40.0% |
| ! | TGTTGATAGATGTGTGGGTT+TGG | - | chr2_1:69233763-69233782 | Msa0220780:intron | 40.0% |
| GGGGTACGAGTATAATTGTT+GGG | + | chr2_1:69233878-69233897 | None:intergenic | 40.0% | |
| ! | AGGGGTACGAGTATAATTGT+TGG | + | chr2_1:69233879-69233898 | None:intergenic | 40.0% |
| CGTACCCCTACAAATAATTG+AGG | - | chr2_1:69233890-69233909 | Msa0220780:intron | 40.0% | |
| GGGTCCTCAATTATTTGTAG+GGG | + | chr2_1:69233897-69233916 | None:intergenic | 40.0% | |
| GGGGTCCTCAATTATTTGTA+GGG | + | chr2_1:69233898-69233917 | None:intergenic | 40.0% | |
| TGGGGTCCTCAATTATTTGT+AGG | + | chr2_1:69233899-69233918 | None:intergenic | 40.0% | |
| CTTGTGGTATAGTACACTCA+AGG | + | chr2_1:69233972-69233991 | None:intergenic | 40.0% | |
| ATAGCCTCATCTACTTGATC+AGG | + | chr2_1:69234110-69234129 | None:intergenic | 40.0% | |
| CAGGGCCGTTCCAATAAAAT+TGG | - | chr2_1:69233622-69233641 | Msa0220780:CDS | 45.0% | |
| TTGAGGACCCCATAAATTGG+AGG | - | chr2_1:69233907-69233926 | Msa0220780:intron | 45.0% | |
| ACTGCATGAAGAAAACGTCG+AGG | - | chr2_1:69234349-69234368 | Msa0220780:intron | 45.0% | |
| CAGGGCCGTTCCAATAAAAT+TGG | - | chr2_1:69233622-69233641 | Msa0220780:CDS | 45.0% | |
| TTGAGGACCCCATAAATTGG+AGG | - | chr2_1:69233907-69233926 | Msa0220780:intron | 45.0% | |
| ACTGCATGAAGAAAACGTCG+AGG | - | chr2_1:69234349-69234368 | Msa0220780:intron | 45.0% | |
| !!! | ATCATTAATTATTTTTATTA+GGG | + | chr2_1:69233675-69233694 | None:intergenic | 5.0% |
| !!! | TATCATTAATTATTTTTATT+AGG | + | chr2_1:69233676-69233695 | None:intergenic | 5.0% |
| !!! | ATCATTAATTATTTTTATTA+GGG | + | chr2_1:69233675-69233694 | None:intergenic | 5.0% |
| !!! | TATCATTAATTATTTTTATT+AGG | + | chr2_1:69233676-69233695 | None:intergenic | 5.0% |
| GACCCCATAAATTGGAGGTC+CGG | - | chr2_1:69233912-69233931 | Msa0220780:intron | 50.0% | |
| AGCCGGACCTCCAATTTATG+GGG | + | chr2_1:69233917-69233936 | None:intergenic | 50.0% | |
| GAGCCGGACCTCCAATTTAT+GGG | + | chr2_1:69233918-69233937 | None:intergenic | 50.0% | |
| GGAAACAAGAAGAGATCGCG+TGG | - | chr2_1:69234194-69234213 | Msa0220780:intron | 50.0% | |
| AACAAGAAGAGATCGCGTGG+TGG | - | chr2_1:69234197-69234216 | Msa0220780:intron | 50.0% | |
| TCTTCATACCGTGCATGCTC+AGG | - | chr2_1:69234409-69234428 | Msa0220780:CDS | 50.0% | |
| GACCCCATAAATTGGAGGTC+CGG | - | chr2_1:69233912-69233931 | Msa0220780:intron | 50.0% | |
| AGCCGGACCTCCAATTTATG+GGG | + | chr2_1:69233917-69233936 | None:intergenic | 50.0% | |
| GAGCCGGACCTCCAATTTAT+GGG | + | chr2_1:69233918-69233937 | None:intergenic | 50.0% | |
| GGAAACAAGAAGAGATCGCG+TGG | - | chr2_1:69234194-69234213 | Msa0220780:intron | 50.0% | |
| AACAAGAAGAGATCGCGTGG+TGG | - | chr2_1:69234197-69234216 | Msa0220780:intron | 50.0% | |
| TCTTCATACCGTGCATGCTC+AGG | - | chr2_1:69234409-69234428 | Msa0220780:CDS | 50.0% | |
| GGAGCCGGACCTCCAATTTA+TGG | + | chr2_1:69233919-69233938 | None:intergenic | 55.0% | |
| TCCTTGCGCTTGCCAAGGAA+CGG | - | chr2_1:69233946-69233965 | Msa0220780:intron | 55.0% | |
| GTACACTCAAGGCCGTTCCT+TGG | + | chr2_1:69233961-69233980 | None:intergenic | 55.0% | |
| AAGAAGAGATCGCGTGGTGG+TGG | - | chr2_1:69234200-69234219 | Msa0220780:intron | 55.0% | |
| GGAGCCGGACCTCCAATTTA+TGG | + | chr2_1:69233919-69233938 | None:intergenic | 55.0% | |
| TCCTTGCGCTTGCCAAGGAA+CGG | - | chr2_1:69233946-69233965 | Msa0220780:intron | 55.0% | |
| GTACACTCAAGGCCGTTCCT+TGG | + | chr2_1:69233961-69233980 | None:intergenic | 55.0% | |
| AAGAAGAGATCGCGTGGTGG+TGG | - | chr2_1:69234200-69234219 | Msa0220780:intron | 55.0% | |
| GGCAAGCGCAAGGAGCTCTA+CGG | + | chr2_1:69233940-69233959 | None:intergenic | 60.0% | |
| AGAGCTCCTTGCGCTTGCCA+AGG | - | chr2_1:69233941-69233960 | Msa0220780:intron | 60.0% | |
| GGTGGCTGCTCGAGTTCTTC+TGG | - | chr2_1:69234218-69234237 | Msa0220780:intron | 60.0% | |
| GGCAAGCGCAAGGAGCTCTA+CGG | + | chr2_1:69233940-69233959 | None:intergenic | 60.0% | |
| AGAGCTCCTTGCGCTTGCCA+AGG | - | chr2_1:69233941-69233960 | Msa0220780:intron | 60.0% | |
| GGTGGCTGCTCGAGTTCTTC+TGG | - | chr2_1:69234218-69234237 | Msa0220780:intron | 60.0% | |
| CGCAAGGAGCTCTACGGAGC+CGG | + | chr2_1:69233934-69233953 | None:intergenic | 65.0% | |
| GCCGTTCCTTGGCAAGCGCA+AGG | + | chr2_1:69233950-69233969 | None:intergenic | 65.0% | |
| CGCAAGGAGCTCTACGGAGC+CGG | + | chr2_1:69233934-69233953 | None:intergenic | 65.0% | |
| GCCGTTCCTTGGCAAGCGCA+AGG | + | chr2_1:69233950-69233969 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 69233247 | 69234484 | 69233247 | ID=Msa0220780;Name=Msa0220780 |
| chr2_1 | mRNA | 69233247 | 69234484 | 69233247 | ID=Msa0220780-mRNA-1;Parent=Msa0220780;Name=Msa0220780-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|2|0|176 |
| chr2_1 | exon | 69234350 | 69234484 | 69234350 | ID=Msa0220780-mRNA-1:exon:19620;Parent=Msa0220780-mRNA-1 |
| chr2_1 | exon | 69233247 | 69233642 | 69233247 | ID=Msa0220780-mRNA-1:exon:19619;Parent=Msa0220780-mRNA-1 |
| chr2_1 | CDS | 69234350 | 69234484 | 69234350 | ID=Msa0220780-mRNA-1:cds;Parent=Msa0220780-mRNA-1 |
| chr2_1 | CDS | 69233247 | 69233642 | 69233247 | ID=Msa0220780-mRNA-1:cds;Parent=Msa0220780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
