Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0221490 | PKI42771.1 | 95.775 | 71 | 3 | 0 | 1 | 71 | 1 | 71 | 1.85e-41 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0221490 | sp|Q05609|CTR1_ARATH | 52.113 | 71 | 34 | 0 | 1 | 71 | 590 | 660 | 9.32e-22 | 90.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0221490 | A0A6N2M8J6 | 100.000 | 71 | 0 | 0 | 1 | 71 | 132 | 202 | 3.13e-44 | 150 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0221490 | MtrunA17_Chr2g0325851 | 100.000 | 71 | 0 | 0 | 1 | 71 | 596 | 666 | 1.15e-44 | 151 |
| Msa0221490 | MtrunA17_Chr4g0041201 | 95.775 | 71 | 3 | 0 | 1 | 71 | 586 | 656 | 2.12e-43 | 148 |
| Msa0221490 | MtrunA17_Chr1g0179331 | 50.000 | 70 | 35 | 0 | 2 | 71 | 595 | 664 | 2.09e-20 | 82.8 |
| Msa0221490 | MtrunA17_Chr8g0392871 | 53.521 | 71 | 31 | 1 | 1 | 71 | 778 | 846 | 2.47e-20 | 82.8 |
| Msa0221490 | MtrunA17_Chr6g0482711 | 52.113 | 71 | 32 | 1 | 1 | 71 | 699 | 767 | 8.76e-20 | 81.3 |
| Msa0221490 | MtrunA17_Chr3g0132791 | 49.296 | 71 | 36 | 0 | 1 | 71 | 692 | 762 | 1.02e-19 | 80.9 |
| Msa0221490 | MtrunA17_Chr5g0427651 | 47.887 | 71 | 37 | 0 | 1 | 71 | 685 | 755 | 3.96e-19 | 79.3 |
| Msa0221490 | MtrunA17_Chr4g0068411 | 51.471 | 68 | 31 | 1 | 4 | 71 | 502 | 567 | 2.99e-18 | 76.6 |
| Msa0221490 | MtrunA17_Chr1g0171451 | 44.286 | 70 | 39 | 0 | 1 | 70 | 453 | 522 | 6.97e-18 | 75.9 |
| Msa0221490 | MtrunA17_Chr2g0294351 | 46.479 | 71 | 36 | 1 | 1 | 71 | 505 | 573 | 1.29e-17 | 75.1 |
| Msa0221490 | MtrunA17_Chr1g0191171 | 42.254 | 71 | 39 | 1 | 1 | 71 | 728 | 796 | 1.09e-16 | 72.4 |
| Msa0221490 | MtrunA17_Chr1g0151541 | 45.070 | 71 | 37 | 1 | 1 | 71 | 702 | 770 | 1.22e-16 | 72.0 |
| Msa0221490 | MtrunA17_Chr3g0143531 | 46.377 | 69 | 35 | 1 | 3 | 71 | 66 | 132 | 1.65e-14 | 65.5 |
| Msa0221490 | MtrunA17_Chr5g0406251 | 48.980 | 49 | 25 | 0 | 1 | 49 | 334 | 382 | 4.63e-14 | 64.7 |
| Msa0221490 | MtrunA17_Chr1g0211611 | 41.429 | 70 | 39 | 1 | 2 | 71 | 341 | 408 | 7.40e-14 | 64.3 |
| Msa0221490 | MtrunA17_Chr1g0202101 | 45.714 | 70 | 36 | 1 | 2 | 71 | 323 | 390 | 7.98e-14 | 64.3 |
| Msa0221490 | MtrunA17_Chr3g0135921 | 41.176 | 68 | 38 | 1 | 2 | 69 | 367 | 432 | 6.89e-12 | 58.5 |
| Msa0221490 | MtrunA17_Chr2g0333691 | 40.580 | 69 | 41 | 0 | 3 | 71 | 162 | 230 | 7.01e-12 | 58.5 |
| Msa0221490 | MtrunA17_Chr4g0059121 | 58.537 | 41 | 17 | 0 | 4 | 44 | 104 | 144 | 7.23e-12 | 58.5 |
| Msa0221490 | MtrunA17_Chr5g0397931 | 43.077 | 65 | 35 | 1 | 7 | 71 | 468 | 530 | 1.27e-11 | 57.8 |
| Msa0221490 | MtrunA17_Chr2g0280771 | 35.211 | 71 | 46 | 0 | 1 | 71 | 521 | 591 | 5.75e-11 | 56.2 |
| Msa0221490 | MtrunA17_Chr7g0247831 | 38.235 | 68 | 40 | 1 | 3 | 70 | 577 | 642 | 5.81e-11 | 56.2 |
| Msa0221490 | MtrunA17_Chr3g0117731 | 38.571 | 70 | 42 | 1 | 2 | 71 | 101 | 169 | 5.94e-11 | 55.8 |
| Msa0221490 | MtrunA17_Chr2g0280781 | 38.028 | 71 | 44 | 0 | 1 | 71 | 549 | 619 | 6.65e-11 | 55.8 |
| Msa0221490 | MtrunA17_Chr1g0150011 | 46.774 | 62 | 31 | 1 | 4 | 65 | 224 | 283 | 7.48e-11 | 55.8 |
| Msa0221490 | MtrunA17_Chr8g0340111 | 36.620 | 71 | 45 | 0 | 1 | 71 | 543 | 613 | 8.58e-11 | 55.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0221490 | AT3G58640.1 | 94.366 | 71 | 4 | 0 | 1 | 71 | 592 | 662 | 4.83e-43 | 147 |
| Msa0221490 | AT3G58640.2 | 94.366 | 71 | 4 | 0 | 1 | 71 | 592 | 662 | 4.83e-43 | 147 |
| Msa0221490 | AT2G31010.1 | 88.732 | 71 | 8 | 0 | 1 | 71 | 558 | 628 | 3.39e-41 | 142 |
| Msa0221490 | AT2G31010.2 | 88.732 | 71 | 8 | 0 | 1 | 71 | 558 | 628 | 3.39e-41 | 142 |
| Msa0221490 | AT2G42640.3 | 70.423 | 71 | 19 | 1 | 1 | 71 | 567 | 635 | 4.64e-29 | 107 |
| Msa0221490 | AT2G42640.1 | 70.423 | 71 | 19 | 1 | 1 | 71 | 567 | 635 | 6.94e-29 | 107 |
| Msa0221490 | AT2G42640.4 | 70.423 | 71 | 19 | 1 | 1 | 71 | 529 | 597 | 7.87e-28 | 104 |
| Msa0221490 | AT5G03730.2 | 52.113 | 71 | 34 | 0 | 1 | 71 | 590 | 660 | 9.48e-23 | 90.1 |
| Msa0221490 | AT5G03730.1 | 52.113 | 71 | 34 | 0 | 1 | 71 | 590 | 660 | 9.48e-23 | 90.1 |
| Msa0221490 | AT1G73660.1 | 50.704 | 71 | 33 | 1 | 1 | 71 | 787 | 855 | 1.62e-19 | 80.9 |
| Msa0221490 | AT1G18160.2 | 49.296 | 71 | 34 | 1 | 1 | 71 | 754 | 822 | 5.26e-19 | 79.3 |
| Msa0221490 | AT1G18160.1 | 49.296 | 71 | 34 | 1 | 1 | 71 | 754 | 822 | 5.27e-19 | 79.3 |
| Msa0221490 | AT5G49470.7 | 51.471 | 68 | 31 | 1 | 4 | 71 | 406 | 471 | 2.48e-18 | 77.4 |
| Msa0221490 | AT5G49470.5 | 51.471 | 68 | 31 | 1 | 4 | 71 | 533 | 598 | 2.48e-18 | 77.4 |
| Msa0221490 | AT5G49470.6 | 51.471 | 68 | 31 | 1 | 4 | 71 | 533 | 598 | 2.48e-18 | 77.4 |
| Msa0221490 | AT5G49470.3 | 51.471 | 68 | 31 | 1 | 4 | 71 | 533 | 598 | 2.49e-18 | 77.4 |
| Msa0221490 | AT1G08720.2 | 49.275 | 69 | 33 | 1 | 1 | 69 | 708 | 774 | 2.84e-18 | 77.4 |
| Msa0221490 | AT1G08720.1 | 49.275 | 69 | 33 | 1 | 1 | 69 | 708 | 774 | 2.84e-18 | 77.4 |
| Msa0221490 | AT5G49470.1 | 51.471 | 68 | 31 | 1 | 4 | 71 | 246 | 311 | 3.34e-18 | 77.0 |
| Msa0221490 | AT4G24480.2 | 49.275 | 69 | 35 | 0 | 3 | 71 | 710 | 778 | 4.36e-18 | 76.6 |
| Msa0221490 | AT5G49470.4 | 51.471 | 68 | 31 | 1 | 4 | 71 | 507 | 572 | 4.38e-18 | 76.6 |
| Msa0221490 | AT4G24480.3 | 49.275 | 69 | 35 | 0 | 3 | 71 | 710 | 778 | 4.54e-18 | 76.6 |
| Msa0221490 | AT3G06630.6 | 49.296 | 71 | 34 | 1 | 1 | 71 | 389 | 457 | 4.68e-18 | 76.6 |
| Msa0221490 | AT3G06620.1 | 49.296 | 71 | 34 | 1 | 1 | 71 | 533 | 601 | 5.12e-18 | 76.6 |
| Msa0221490 | AT3G06630.4 | 49.296 | 71 | 34 | 1 | 1 | 71 | 473 | 541 | 8.46e-18 | 75.9 |
| Msa0221490 | AT3G06630.3 | 49.296 | 71 | 34 | 1 | 1 | 71 | 473 | 541 | 8.46e-18 | 75.9 |
| Msa0221490 | AT3G06630.5 | 49.296 | 71 | 34 | 1 | 1 | 71 | 473 | 541 | 8.46e-18 | 75.9 |
| Msa0221490 | AT3G06630.1 | 49.296 | 71 | 34 | 1 | 1 | 71 | 473 | 541 | 8.72e-18 | 75.9 |
| Msa0221490 | AT4G24480.1 | 45.833 | 72 | 38 | 1 | 1 | 71 | 712 | 783 | 8.89e-18 | 75.9 |
| Msa0221490 | AT3G06630.7 | 49.296 | 71 | 34 | 1 | 1 | 71 | 473 | 541 | 9.50e-18 | 75.9 |
| Msa0221490 | AT3G06630.2 | 49.296 | 71 | 34 | 1 | 1 | 71 | 473 | 541 | 1.24e-17 | 75.5 |
| Msa0221490 | AT5G11850.1 | 45.070 | 71 | 37 | 1 | 1 | 71 | 648 | 716 | 6.42e-17 | 73.6 |
| Msa0221490 | AT1G67890.4 | 50.000 | 68 | 32 | 1 | 4 | 71 | 401 | 466 | 1.37e-16 | 72.4 |
| Msa0221490 | AT1G67890.3 | 50.000 | 68 | 32 | 1 | 4 | 71 | 529 | 594 | 1.38e-16 | 72.4 |
| Msa0221490 | AT1G67890.2 | 50.000 | 68 | 32 | 1 | 4 | 71 | 529 | 594 | 1.38e-16 | 72.4 |
| Msa0221490 | AT1G67890.1 | 50.000 | 68 | 32 | 1 | 4 | 71 | 529 | 594 | 1.38e-16 | 72.4 |
| Msa0221490 | AT3G06640.2 | 46.479 | 71 | 36 | 1 | 1 | 71 | 485 | 553 | 2.52e-16 | 71.6 |
| Msa0221490 | AT3G06640.3 | 46.479 | 71 | 36 | 1 | 1 | 71 | 485 | 553 | 2.52e-16 | 71.6 |
| Msa0221490 | AT3G06640.1 | 46.479 | 71 | 36 | 1 | 1 | 71 | 485 | 553 | 2.95e-16 | 71.6 |
| Msa0221490 | AT4G38470.3 | 42.857 | 70 | 38 | 1 | 2 | 71 | 330 | 397 | 7.35e-14 | 64.7 |
| Msa0221490 | AT4G38470.2 | 42.857 | 70 | 38 | 1 | 2 | 71 | 330 | 397 | 7.38e-14 | 64.7 |
| Msa0221490 | AT4G38470.1 | 42.857 | 70 | 38 | 1 | 2 | 71 | 330 | 397 | 7.40e-14 | 64.7 |
| Msa0221490 | AT3G59700.1 | 39.130 | 69 | 42 | 0 | 1 | 69 | 377 | 445 | 7.66e-14 | 64.7 |
| Msa0221490 | AT4G23050.1 | 43.077 | 65 | 35 | 1 | 7 | 71 | 512 | 574 | 5.06e-13 | 62.4 |
| Msa0221490 | AT4G23050.2 | 43.077 | 65 | 35 | 1 | 7 | 71 | 513 | 575 | 5.06e-13 | 62.4 |
| Msa0221490 | AT2G17700.1 | 39.437 | 71 | 41 | 1 | 1 | 71 | 325 | 393 | 1.23e-12 | 61.2 |
| Msa0221490 | AT2G43690.2 | 36.232 | 69 | 44 | 0 | 1 | 69 | 338 | 406 | 3.65e-12 | 59.7 |
| Msa0221490 | AT2G43690.1 | 36.232 | 69 | 44 | 0 | 1 | 69 | 374 | 442 | 3.66e-12 | 59.7 |
| Msa0221490 | AT2G43690.3 | 36.232 | 69 | 44 | 0 | 1 | 69 | 374 | 442 | 3.66e-12 | 59.7 |
| Msa0221490 | AT3G59730.1 | 37.500 | 72 | 42 | 1 | 1 | 69 | 374 | 445 | 4.45e-12 | 59.7 |
| Msa0221490 | AT3G59750.1 | 36.232 | 69 | 44 | 0 | 1 | 69 | 342 | 410 | 5.50e-12 | 59.3 |
| Msa0221490 | AT4G35780.1 | 44.898 | 49 | 27 | 0 | 1 | 49 | 331 | 379 | 6.54e-12 | 59.3 |
| Msa0221490 | AT3G59740.1 | 37.500 | 72 | 42 | 1 | 1 | 69 | 372 | 443 | 1.00e-11 | 58.5 |
| Msa0221490 | AT5G57035.1 | 49.231 | 65 | 31 | 1 | 2 | 66 | 463 | 525 | 1.49e-11 | 58.2 |
| Msa0221490 | AT3G45330.1 | 41.429 | 70 | 38 | 2 | 1 | 69 | 386 | 453 | 2.39e-11 | 57.4 |
| Msa0221490 | AT1G69910.1 | 41.538 | 65 | 36 | 1 | 1 | 65 | 373 | 435 | 2.68e-11 | 57.4 |
| Msa0221490 | AT2G43700.3 | 40.000 | 70 | 40 | 2 | 1 | 69 | 349 | 417 | 3.74e-11 | 57.0 |
| Msa0221490 | AT2G43700.5 | 40.000 | 70 | 40 | 2 | 1 | 69 | 349 | 417 | 3.74e-11 | 57.0 |
| Msa0221490 | AT2G43700.2 | 40.000 | 70 | 40 | 2 | 1 | 69 | 349 | 417 | 3.74e-11 | 57.0 |
| Msa0221490 | AT2G43700.4 | 40.000 | 70 | 40 | 2 | 1 | 69 | 349 | 417 | 3.74e-11 | 57.0 |
| Msa0221490 | AT2G43700.1 | 40.000 | 70 | 40 | 2 | 1 | 69 | 373 | 441 | 3.74e-11 | 57.0 |
Find 29 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGCAGTCATCTTATTTCT+TGG | 0.233546 | 2_1:-70087434 | Msa0221490:intron |
| ATCTATGGTCACGGAATATA+TGG | 0.336393 | 2_1:-70087387 | Msa0221490:CDS |
| CCATAATCCTATCTCTTCAT+TGG | 0.339825 | 2_1:-70087243 | Msa0221490:three_prime_UTR |
| TCTGACCGCTCAAATGTATC+AGG | 0.364181 | 2_1:+70087345 | None:intergenic |
| CCAATGAAGAGATAGGATTA+TGG | 0.385163 | 2_1:+70087243 | None:intergenic |
| GAGAAGTCTTCCGTGGCATA+TGG | 0.395204 | 2_1:-70088092 | Msa0221490:five_prime_UTR |
| TGGCACAGATGTTGCAATCA+AGG | 0.417099 | 2_1:-70088067 | Msa0221490:five_prime_UTR |
| ATAAATGCCAATGAAGAGAT+AGG | 0.424613 | 2_1:+70087236 | None:intergenic |
| AAAGCCTCCACGTTTATCTA+TGG | 0.448888 | 2_1:-70087402 | Msa0221490:CDS |
| AGCCGACTCCGACATCCTAA+TGG | 0.463896 | 2_1:-70087878 | Msa0221490:intron |
| ATTTGAGCGGTCAGAAGAAA+AGG | 0.483427 | 2_1:-70087337 | Msa0221490:CDS |
| AGATGTTGCGTGACATATGC+AGG | 0.499033 | 2_1:-70087292 | Msa0221490:CDS |
| GTCAGAAGAAAAGGCTCAGT+TGG | 0.511252 | 2_1:-70087328 | Msa0221490:CDS |
| GGTCACGGAATATATGGAGA+TGG | 0.529432 | 2_1:-70087381 | Msa0221490:CDS |
| GTCACGGAATATATGGAGAT+GGG | 0.556752 | 2_1:-70087380 | Msa0221490:CDS |
| TTCTTTGGAGAAGTCTTCCG+TGG | 0.558208 | 2_1:-70088099 | Msa0221490:five_prime_UTR |
| GTCTTCCGTGGCATATGGAA+TGG | 0.558924 | 2_1:-70088087 | Msa0221490:five_prime_UTR |
| TACCATTAGGATGTCGGAGT+CGG | 0.573465 | 2_1:+70087876 | None:intergenic |
| AGATTTAACTGCTGAAAACA+TGG | 0.574804 | 2_1:-70088031 | Msa0221490:exon |
| TCCACGTTTATCTATGGTCA+CGG | 0.582650 | 2_1:-70087396 | Msa0221490:CDS |
| AGAAGAAAAGGCTCAGTTGG+CGG | 0.595866 | 2_1:-70087325 | Msa0221490:CDS |
| TCACATAAATGGTCAAGCAA+TGG | 0.603112 | 2_1:+70088137 | None:intergenic |
| GGAGAATACCATTAGGATGT+CGG | 0.604478 | 2_1:+70087870 | None:intergenic |
| GCAATGAAATATCTATTCTG+AGG | 0.621562 | 2_1:-70087999 | Msa0221490:intron |
| CTGTGCCATTCCATATGCCA+CGG | 0.624313 | 2_1:+70088082 | None:intergenic |
| GAAGAGATAGGATTATGGAA+AGG | 0.643967 | 2_1:+70087248 | None:intergenic |
| TATTACCTGATACATTTGAG+CGG | 0.650376 | 2_1:-70087350 | Msa0221490:CDS |
| GTGACCATAGATAAACGTGG+AGG | 0.769322 | 2_1:+70087398 | None:intergenic |
| TCCGTGACCATAGATAAACG+TGG | 0.794914 | 2_1:+70087395 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAATACATAAACTGAA+AGG | + | chr2_1:70087920-70087939 | None:intergenic | 15.0% |
| !! | TAAATAATACATAAACTGAA+AGG | + | chr2_1:70087920-70087939 | None:intergenic | 15.0% |
| !! | GAAAAGAAAAATCACATAAA+TGG | + | chr2_1:70087267-70087286 | None:intergenic | 20.0% |
| !!! | TTTATGTGATTTTTCTTTTC+AGG | - | chr2_1:70087267-70087286 | Msa0221490:three_prime_UTR | 20.0% |
| !! | GAAGTAAATAGTTAAAATGT+TGG | + | chr2_1:70087544-70087563 | None:intergenic | 20.0% |
| !! | ACTATTTACTTCTATAGTTT+CGG | - | chr2_1:70087552-70087571 | Msa0221490:intron | 20.0% |
| !! | TTCAAAGGACATTATATTAA+GGG | + | chr2_1:70087811-70087830 | None:intergenic | 20.0% |
| !! | ATTCAAAGGACATTATATTA+AGG | + | chr2_1:70087812-70087831 | None:intergenic | 20.0% |
| !! | GAAAAGAAAAATCACATAAA+TGG | + | chr2_1:70087267-70087286 | None:intergenic | 20.0% |
| !!! | TTTATGTGATTTTTCTTTTC+AGG | - | chr2_1:70087267-70087286 | Msa0221490:three_prime_UTR | 20.0% |
| !! | GAAGTAAATAGTTAAAATGT+TGG | + | chr2_1:70087544-70087563 | None:intergenic | 20.0% |
| !! | ACTATTTACTTCTATAGTTT+CGG | - | chr2_1:70087552-70087571 | Msa0221490:intron | 20.0% |
| !! | TTCAAAGGACATTATATTAA+GGG | + | chr2_1:70087811-70087830 | None:intergenic | 20.0% |
| !! | ATTCAAAGGACATTATATTA+AGG | + | chr2_1:70087812-70087831 | None:intergenic | 20.0% |
| !!! | AATATCTATTCTGAGGTATT+TGG | - | chr2_1:70087398-70087417 | Msa0221490:CDS | 25.0% |
| ! | TACACGTAGTAGTTAATATA+AGG | - | chr2_1:70087605-70087624 | Msa0221490:intron | 25.0% |
| ! | ACACGTAGTAGTTAATATAA+GGG | - | chr2_1:70087606-70087625 | Msa0221490:intron | 25.0% |
| ! | CCAAGAAAAAGTTTCTTATT+TGG | + | chr2_1:70087670-70087689 | None:intergenic | 25.0% |
| !!! | CCAAATAAGAAACTTTTTCT+TGG | - | chr2_1:70087667-70087686 | Msa0221490:intron | 25.0% |
| ! | ACTTATTAAGGATTCAAAAG+AGG | + | chr2_1:70087761-70087780 | None:intergenic | 25.0% |
| ! | TACTAAAGACAACAATTCAA+AGG | + | chr2_1:70087826-70087845 | None:intergenic | 25.0% |
| ! | AAAGTAAGATTATGTAAGCT+TGG | - | chr2_1:70087866-70087885 | Msa0221490:intron | 25.0% |
| !!! | AATATCTATTCTGAGGTATT+TGG | - | chr2_1:70087398-70087417 | Msa0221490:CDS | 25.0% |
| ! | TACACGTAGTAGTTAATATA+AGG | - | chr2_1:70087605-70087624 | Msa0221490:intron | 25.0% |
| ! | ACACGTAGTAGTTAATATAA+GGG | - | chr2_1:70087606-70087625 | Msa0221490:intron | 25.0% |
| ! | CCAAGAAAAAGTTTCTTATT+TGG | + | chr2_1:70087670-70087689 | None:intergenic | 25.0% |
| !!! | CCAAATAAGAAACTTTTTCT+TGG | - | chr2_1:70087667-70087686 | Msa0221490:intron | 25.0% |
| ! | ACTTATTAAGGATTCAAAAG+AGG | + | chr2_1:70087761-70087780 | None:intergenic | 25.0% |
| ! | TACTAAAGACAACAATTCAA+AGG | + | chr2_1:70087826-70087845 | None:intergenic | 25.0% |
| ! | AAAGTAAGATTATGTAAGCT+TGG | - | chr2_1:70087866-70087885 | Msa0221490:intron | 25.0% |
| !! | TTTTTCTTTTCAGGCTTCTT+TGG | - | chr2_1:70087276-70087295 | Msa0221490:exon | 30.0% |
| AGATTTAACTGCTGAAAACA+TGG | - | chr2_1:70087359-70087378 | Msa0221490:CDS | 30.0% | |
| GCAATGAAATATCTATTCTG+AGG | - | chr2_1:70087391-70087410 | Msa0221490:CDS | 30.0% | |
| AAATGTTGGAGAATACCATT+AGG | + | chr2_1:70087530-70087549 | None:intergenic | 30.0% | |
| ! | TATGCAGTCATCTTATTTCT+TGG | - | chr2_1:70087956-70087975 | Msa0221490:intron | 30.0% |
| TATTACCTGATACATTTGAG+CGG | - | chr2_1:70088040-70088059 | Msa0221490:five_prime_UTR | 30.0% | |
| ATAAATGCCAATGAAGAGAT+AGG | + | chr2_1:70088157-70088176 | None:intergenic | 30.0% | |
| !! | TTTTTCTTTTCAGGCTTCTT+TGG | - | chr2_1:70087276-70087295 | Msa0221490:exon | 30.0% |
| AGATTTAACTGCTGAAAACA+TGG | - | chr2_1:70087359-70087378 | Msa0221490:CDS | 30.0% | |
| GCAATGAAATATCTATTCTG+AGG | - | chr2_1:70087391-70087410 | Msa0221490:CDS | 30.0% | |
| AAATGTTGGAGAATACCATT+AGG | + | chr2_1:70087530-70087549 | None:intergenic | 30.0% | |
| ! | TATGCAGTCATCTTATTTCT+TGG | - | chr2_1:70087956-70087975 | Msa0221490:intron | 30.0% |
| TATTACCTGATACATTTGAG+CGG | - | chr2_1:70088040-70088059 | Msa0221490:five_prime_UTR | 30.0% | |
| ATAAATGCCAATGAAGAGAT+AGG | + | chr2_1:70088157-70088176 | None:intergenic | 30.0% | |
| TCACATAAATGGTCAAGCAA+TGG | + | chr2_1:70087256-70087275 | None:intergenic | 35.0% | |
| ATGTTGAACGCAACAGAAAA+AGG | + | chr2_1:70087446-70087465 | None:intergenic | 35.0% | |
| AATCCTTAATAAGTGCCCTA+AGG | - | chr2_1:70087767-70087786 | Msa0221490:intron | 35.0% | |
| ATCCTTAATAAGTGCCCTAA+GGG | - | chr2_1:70087768-70087787 | Msa0221490:intron | 35.0% | |
| ATCTATGGTCACGGAATATA+TGG | - | chr2_1:70088003-70088022 | Msa0221490:CDS | 35.0% | |
| GAAGAGATAGGATTATGGAA+AGG | + | chr2_1:70088145-70088164 | None:intergenic | 35.0% | |
| CCAATGAAGAGATAGGATTA+TGG | + | chr2_1:70088150-70088169 | None:intergenic | 35.0% | |
| CCATAATCCTATCTCTTCAT+TGG | - | chr2_1:70088147-70088166 | Msa0221490:five_prime_UTR | 35.0% | |
| TCACATAAATGGTCAAGCAA+TGG | + | chr2_1:70087256-70087275 | None:intergenic | 35.0% | |
| ATGTTGAACGCAACAGAAAA+AGG | + | chr2_1:70087446-70087465 | None:intergenic | 35.0% | |
| AATCCTTAATAAGTGCCCTA+AGG | - | chr2_1:70087767-70087786 | Msa0221490:intron | 35.0% | |
| ATCCTTAATAAGTGCCCTAA+GGG | - | chr2_1:70087768-70087787 | Msa0221490:intron | 35.0% | |
| ATCTATGGTCACGGAATATA+TGG | - | chr2_1:70088003-70088022 | Msa0221490:CDS | 35.0% | |
| GAAGAGATAGGATTATGGAA+AGG | + | chr2_1:70088145-70088164 | None:intergenic | 35.0% | |
| CCAATGAAGAGATAGGATTA+TGG | + | chr2_1:70088150-70088169 | None:intergenic | 35.0% | |
| CCATAATCCTATCTCTTCAT+TGG | - | chr2_1:70088147-70088166 | Msa0221490:five_prime_UTR | 35.0% | |
| GGAGAATACCATTAGGATGT+CGG | + | chr2_1:70087523-70087542 | None:intergenic | 40.0% | |
| AAATGCTATCAAGTGCCCTT+GGG | - | chr2_1:70087629-70087648 | Msa0221490:intron | 40.0% | |
| ACTTCTAAACAAGTCCCCAA+GGG | + | chr2_1:70087647-70087666 | None:intergenic | 40.0% | |
| AATGCTAACAAGTGCCCTTA+GGG | + | chr2_1:70087785-70087804 | None:intergenic | 40.0% | |
| AAATGCTAACAAGTGCCCTT+AGG | + | chr2_1:70087786-70087805 | None:intergenic | 40.0% | |
| AAAGCCTCCACGTTTATCTA+TGG | - | chr2_1:70087988-70088007 | Msa0221490:intron | 40.0% | |
| TCCACGTTTATCTATGGTCA+CGG | - | chr2_1:70087994-70088013 | Msa0221490:intron | 40.0% | |
| GTCACGGAATATATGGAGAT+GGG | - | chr2_1:70088010-70088029 | Msa0221490:CDS | 40.0% | |
| ATTTGAGCGGTCAGAAGAAA+AGG | - | chr2_1:70088053-70088072 | Msa0221490:five_prime_UTR | 40.0% | |
| GGAGAATACCATTAGGATGT+CGG | + | chr2_1:70087523-70087542 | None:intergenic | 40.0% | |
| AAATGCTATCAAGTGCCCTT+GGG | - | chr2_1:70087629-70087648 | Msa0221490:intron | 40.0% | |
| ACTTCTAAACAAGTCCCCAA+GGG | + | chr2_1:70087647-70087666 | None:intergenic | 40.0% | |
| AATGCTAACAAGTGCCCTTA+GGG | + | chr2_1:70087785-70087804 | None:intergenic | 40.0% | |
| AAATGCTAACAAGTGCCCTT+AGG | + | chr2_1:70087786-70087805 | None:intergenic | 40.0% | |
| AAAGCCTCCACGTTTATCTA+TGG | - | chr2_1:70087988-70088007 | Msa0221490:intron | 40.0% | |
| TCCACGTTTATCTATGGTCA+CGG | - | chr2_1:70087994-70088013 | Msa0221490:intron | 40.0% | |
| GTCACGGAATATATGGAGAT+GGG | - | chr2_1:70088010-70088029 | Msa0221490:CDS | 40.0% | |
| ATTTGAGCGGTCAGAAGAAA+AGG | - | chr2_1:70088053-70088072 | Msa0221490:five_prime_UTR | 40.0% | |
| ! | TTCTTTGGAGAAGTCTTCCG+TGG | - | chr2_1:70087291-70087310 | Msa0221490:CDS | 45.0% |
| TGGCACAGATGTTGCAATCA+AGG | - | chr2_1:70087323-70087342 | Msa0221490:CDS | 45.0% | |
| TACCATTAGGATGTCGGAGT+CGG | + | chr2_1:70087517-70087536 | None:intergenic | 45.0% | |
| GAAATGCTATCAAGTGCCCT+TGG | - | chr2_1:70087628-70087647 | Msa0221490:intron | 45.0% | |
| AATGCTATCAAGTGCCCTTG+GGG | - | chr2_1:70087630-70087649 | Msa0221490:intron | 45.0% | |
| GACTTCTAAACAAGTCCCCA+AGG | + | chr2_1:70087648-70087667 | None:intergenic | 45.0% | |
| ! | TGCCCTTAGGGCACTTATTA+AGG | + | chr2_1:70087773-70087792 | None:intergenic | 45.0% |
| GTGACCATAGATAAACGTGG+AGG | + | chr2_1:70087995-70088014 | None:intergenic | 45.0% | |
| TCCGTGACCATAGATAAACG+TGG | + | chr2_1:70087998-70088017 | None:intergenic | 45.0% | |
| GGTCACGGAATATATGGAGA+TGG | - | chr2_1:70088009-70088028 | Msa0221490:CDS | 45.0% | |
| TCTGACCGCTCAAATGTATC+AGG | + | chr2_1:70088048-70088067 | None:intergenic | 45.0% | |
| GTCAGAAGAAAAGGCTCAGT+TGG | - | chr2_1:70088062-70088081 | Msa0221490:five_prime_UTR | 45.0% | |
| AGAAGAAAAGGCTCAGTTGG+CGG | - | chr2_1:70088065-70088084 | Msa0221490:five_prime_UTR | 45.0% | |
| AGATGTTGCGTGACATATGC+AGG | - | chr2_1:70088098-70088117 | Msa0221490:five_prime_UTR | 45.0% | |
| ! | TTCTTTGGAGAAGTCTTCCG+TGG | - | chr2_1:70087291-70087310 | Msa0221490:CDS | 45.0% |
| TGGCACAGATGTTGCAATCA+AGG | - | chr2_1:70087323-70087342 | Msa0221490:CDS | 45.0% | |
| TACCATTAGGATGTCGGAGT+CGG | + | chr2_1:70087517-70087536 | None:intergenic | 45.0% | |
| GAAATGCTATCAAGTGCCCT+TGG | - | chr2_1:70087628-70087647 | Msa0221490:intron | 45.0% | |
| AATGCTATCAAGTGCCCTTG+GGG | - | chr2_1:70087630-70087649 | Msa0221490:intron | 45.0% | |
| GACTTCTAAACAAGTCCCCA+AGG | + | chr2_1:70087648-70087667 | None:intergenic | 45.0% | |
| ! | TGCCCTTAGGGCACTTATTA+AGG | + | chr2_1:70087773-70087792 | None:intergenic | 45.0% |
| GTGACCATAGATAAACGTGG+AGG | + | chr2_1:70087995-70088014 | None:intergenic | 45.0% | |
| TCCGTGACCATAGATAAACG+TGG | + | chr2_1:70087998-70088017 | None:intergenic | 45.0% | |
| GGTCACGGAATATATGGAGA+TGG | - | chr2_1:70088009-70088028 | Msa0221490:CDS | 45.0% | |
| TCTGACCGCTCAAATGTATC+AGG | + | chr2_1:70088048-70088067 | None:intergenic | 45.0% | |
| GTCAGAAGAAAAGGCTCAGT+TGG | - | chr2_1:70088062-70088081 | Msa0221490:five_prime_UTR | 45.0% | |
| AGAAGAAAAGGCTCAGTTGG+CGG | - | chr2_1:70088065-70088084 | Msa0221490:five_prime_UTR | 45.0% | |
| AGATGTTGCGTGACATATGC+AGG | - | chr2_1:70088098-70088117 | Msa0221490:five_prime_UTR | 45.0% | |
| GAGAAGTCTTCCGTGGCATA+TGG | - | chr2_1:70087298-70087317 | Msa0221490:CDS | 50.0% | |
| GTCTTCCGTGGCATATGGAA+TGG | - | chr2_1:70087303-70087322 | Msa0221490:CDS | 50.0% | |
| ! | CTGTGCCATTCCATATGCCA+CGG | + | chr2_1:70087311-70087330 | None:intergenic | 50.0% |
| GAGAAGTCTTCCGTGGCATA+TGG | - | chr2_1:70087298-70087317 | Msa0221490:CDS | 50.0% | |
| GTCTTCCGTGGCATATGGAA+TGG | - | chr2_1:70087303-70087322 | Msa0221490:CDS | 50.0% | |
| ! | CTGTGCCATTCCATATGCCA+CGG | + | chr2_1:70087311-70087330 | None:intergenic | 50.0% |
| ATTAGGATGTCGGAGTCGGC+TGG | + | chr2_1:70087513-70087532 | None:intergenic | 55.0% | |
| ! | AGCCGACTCCGACATCCTAA+TGG | - | chr2_1:70087512-70087531 | Msa0221490:intron | 55.0% |
| ATTAGGATGTCGGAGTCGGC+TGG | + | chr2_1:70087513-70087532 | None:intergenic | 55.0% | |
| ! | AGCCGACTCCGACATCCTAA+TGG | - | chr2_1:70087512-70087531 | Msa0221490:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 70087223 | 70088189 | 70087223 | ID=Msa0221490;Name=Msa0221490 |
| chr2_1 | mRNA | 70087223 | 70088189 | 70087223 | ID=Msa0221490-mRNA-1;Parent=Msa0221490;Name=Msa0221490-mRNA-1;_AED=0.00;_eAED=0.00;_QI=155|1|1|1|1|1|3|66|71 |
| chr2_1 | exon | 70087223 | 70087449 | 70087223 | ID=Msa0221490-mRNA-1:exon:20027;Parent=Msa0221490-mRNA-1 |
| chr2_1 | exon | 70087879 | 70087898 | 70087879 | ID=Msa0221490-mRNA-1:exon:20026;Parent=Msa0221490-mRNA-1 |
| chr2_1 | exon | 70088000 | 70088189 | 70088000 | ID=Msa0221490-mRNA-1:exon:20025;Parent=Msa0221490-mRNA-1 |
| chr2_1 | five_prime_UTR | 70088035 | 70088189 | 70088035 | ID=Msa0221490-mRNA-1:five_prime_utr;Parent=Msa0221490-mRNA-1 |
| chr2_1 | CDS | 70088000 | 70088034 | 70088000 | ID=Msa0221490-mRNA-1:cds;Parent=Msa0221490-mRNA-1 |
| chr2_1 | CDS | 70087879 | 70087898 | 70087879 | ID=Msa0221490-mRNA-1:cds;Parent=Msa0221490-mRNA-1 |
| chr2_1 | CDS | 70087289 | 70087449 | 70087289 | ID=Msa0221490-mRNA-1:cds;Parent=Msa0221490-mRNA-1 |
| chr2_1 | three_prime_UTR | 70087223 | 70087288 | 70087223 | ID=Msa0221490-mRNA-1:three_prime_utr;Parent=Msa0221490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
