AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0223710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0223710 MtrunA17_Chr2g0329361 96.429 252 9 0 1 252 1 252 0.0 505
Msa0223710 MtrunA17_Chr7g0233911 38.350 206 107 6 45 245 15 205 1.59e-43 146
Msa0223710 MtrunA17_Chr3g0078041 36.788 193 102 5 55 243 44 220 3.55e-36 128
Msa0223710 MtrunA17_Chr2g0329421 37.297 185 103 4 60 243 26 198 5.19e-35 124
Msa0223710 MtrunA17_Chr4g0033611 37.778 180 102 4 60 239 75 244 2.13e-32 119
Msa0223710 MtrunA17_Chr1g0202341 44.954 109 59 1 59 167 49 156 6.63e-25 103
Msa0223710 MtrunA17_Chr5g0448761 45.614 114 60 2 59 170 58 171 2.63e-21 92.8
Msa0223710 MtrunA17_Chr2g0287061 36.054 147 71 3 58 198 26 155 4.95e-20 89.0
Msa0223710 MtrunA17_Chr2g0287061 32.075 106 57 1 59 164 181 271 6.01e-14 71.2
Msa0223710 MtrunA17_Chr6g0458391 35.878 131 82 1 61 191 225 353 2.13e-18 84.3
Msa0223710 MtrunA17_Chr6g0458391 29.012 162 105 3 40 195 65 222 4.74e-14 71.6
Msa0223710 MtrunA17_Chr5g0440451 36.937 111 55 1 60 170 42 137 3.07e-18 84.0
Msa0223710 MtrunA17_Chr3g0080351 33.333 123 71 1 59 170 74 196 2.49e-16 78.2
Msa0223710 MtrunA17_Chr2g0329031 34.653 101 61 1 65 165 18 113 1.07e-13 70.5
Msa0223710 MtrunA17_Chr1g0203721 38.095 105 63 1 63 167 65 167 1.80e-13 69.7
Msa0223710 MtrunA17_Chr3g0082121 38.532 109 62 3 61 167 43 148 2.44e-13 69.3
Msa0223710 MtrunA17_Chr2g0291591 28.859 149 99 2 16 164 20 161 7.98e-13 67.8
Msa0223710 MtrunA17_Chr2g0291581 33.019 106 61 2 61 164 71 168 3.15e-12 65.9
Msa0223710 MtrunA17_Chr2g0294841 33.333 144 77 6 56 187 40 176 6.17e-12 65.1
Msa0223710 MtrunA17_Chr2g0287651 32.520 123 78 3 46 167 63 181 8.21e-12 64.7
Msa0223710 MtrunA17_Chr5g0401121 34.127 126 73 4 48 169 43 162 1.04e-11 61.6
Msa0223710 MtrunA17_Chr1g0203051 30.233 172 109 5 3 165 14 183 1.20e-11 64.3
Msa0223710 MtrunA17_Chr2g0290391 33.065 124 66 5 56 170 46 161 2.25e-11 63.5
Msa0223710 MtrunA17_Chr1g0207551 30.357 112 73 2 54 165 28 134 2.46e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0223710 AT2G43280.1 43.590 195 88 6 54 243 15 192 7.62e-43 145
Msa0223710 AT3G07500.1 40.426 188 105 3 56 243 28 208 2.16e-40 139
Msa0223710 AT2G43280.2 45.087 173 73 6 76 243 2 157 2.13e-38 132
Msa0223710 AT3G59470.3 36.036 222 123 7 31 244 32 242 4.38e-36 129
Msa0223710 AT3G59470.1 36.036 222 123 7 31 244 32 242 4.38e-36 129
Msa0223710 AT3G59470.2 36.036 222 123 7 31 244 44 254 4.75e-36 129
Msa0223710 AT4G12850.1 35.326 184 103 4 60 243 10 177 7.77e-34 121
Msa0223710 AT4G38180.1 45.082 122 66 1 50 170 62 183 2.36e-24 102
Msa0223710 AT4G12850.4 40.000 105 58 1 60 164 10 109 1.07e-22 90.9
Msa0223710 AT4G12850.2 40.000 105 58 1 60 164 10 109 1.22e-22 90.5
Msa0223710 AT5G18960.2 43.396 106 45 1 59 164 41 131 1.29e-21 94.0
Msa0223710 AT5G18960.2 36.190 105 52 1 60 164 210 299 5.99e-16 77.4
Msa0223710 AT5G18960.1 43.396 106 45 1 59 164 41 131 1.29e-21 94.0
Msa0223710 AT5G18960.1 36.190 105 52 1 60 164 210 299 5.99e-16 77.4
Msa0223710 AT3G06250.2 42.453 106 46 1 59 164 26 116 7.41e-21 92.0
Msa0223710 AT3G06250.2 36.885 122 58 2 43 164 176 278 2.68e-17 81.6
Msa0223710 AT3G06250.1 42.453 106 46 1 59 164 26 116 7.41e-21 92.0
Msa0223710 AT3G06250.1 36.885 122 58 2 43 164 176 278 2.68e-17 81.6
Msa0223710 AT3G06250.3 42.453 106 46 1 59 164 26 116 7.41e-21 92.0
Msa0223710 AT3G06250.3 36.885 122 58 2 43 164 176 278 2.68e-17 81.6
Msa0223710 AT2G27110.2 37.795 127 61 3 41 166 28 137 1.01e-15 77.0
Msa0223710 AT2G27110.1 37.795 127 61 3 41 166 28 137 1.01e-15 77.0
Msa0223710 AT3G22170.2 32.520 123 72 1 59 170 68 190 3.10e-15 75.5
Msa0223710 AT3G22170.1 32.520 123 72 1 59 170 68 190 3.10e-15 75.5
Msa0223710 AT2G32250.2 35.644 101 60 1 64 164 41 136 3.68e-14 72.4
Msa0223710 AT2G32250.4 35.644 101 60 1 64 164 41 136 3.68e-14 72.4
Msa0223710 AT2G32250.5 35.644 101 60 1 64 164 41 136 3.90e-14 72.0
Msa0223710 AT2G32250.6 35.644 101 60 1 64 164 41 136 3.93e-14 72.0
Msa0223710 AT2G32250.1 35.644 101 60 1 64 164 41 136 3.93e-14 72.0
Msa0223710 AT2G32250.3 35.644 101 60 1 64 164 41 136 3.93e-14 72.0
Msa0223710 AT4G19990.7 32.456 114 66 1 64 166 38 151 1.73e-13 70.1
Msa0223710 AT4G19990.3 32.456 114 66 1 64 166 24 137 1.96e-13 70.1
Msa0223710 AT4G19990.4 32.456 114 66 1 64 166 24 137 1.96e-13 70.1
Msa0223710 AT4G19990.5 32.456 114 66 1 64 166 24 137 2.05e-13 70.1
Msa0223710 AT4G19990.6 32.456 114 66 1 64 166 24 137 2.07e-13 70.1
Msa0223710 AT4G19990.2 32.456 114 66 1 64 166 24 137 2.07e-13 70.1
Msa0223710 AT2G32250.8 35.000 100 60 1 65 164 1 95 3.14e-13 69.3
Msa0223710 AT2G32250.7 35.000 100 60 1 65 164 1 95 3.18e-13 69.3
Msa0223710 AT1G76320.3 30.952 126 81 2 65 190 1 120 6.38e-13 68.6
Msa0223710 AT1G76320.2 30.952 126 81 2 65 190 1 120 6.80e-13 68.6
Msa0223710 AT1G76320.1 30.952 126 81 2 65 190 1 120 6.87e-13 68.6
Msa0223710 AT1G76320.4 30.952 126 81 2 65 190 1 120 6.87e-13 68.6
Msa0223710 AT1G80010.1 34.615 104 62 1 61 164 95 192 1.05e-12 67.8
Msa0223710 AT4G15090.1 32.710 107 70 1 59 165 49 153 1.09e-12 67.8
Msa0223710 AT4G15090.5 32.710 107 70 1 59 165 49 153 1.09e-12 67.8
Msa0223710 AT4G15090.3 32.710 107 70 1 59 165 49 153 1.09e-12 67.8
Msa0223710 AT4G15090.2 32.710 107 70 1 59 165 49 153 1.09e-12 67.8
Msa0223710 AT4G15090.4 32.710 107 70 1 59 165 49 153 1.09e-12 67.8
Msa0223710 AT1G52520.1 33.654 104 63 1 61 164 85 182 2.30e-12 67.0

Find 103 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATTGTTGCCAGACATTC+TGG 0.240332 2_1:+73348760 Msa0223710:three_prime_UTR
CATGATAAGGTTGGCTTTAC+GGG 0.249268 2_1:+73347611 Msa0223710:CDS
TGTATGTTCCTTCACAAATT+TGG 0.258446 2_1:-73347655 None:intergenic
TGTTGCTGGGTTTCTCTACT+TGG 0.271829 2_1:+73345026 Msa0223710:five_prime_UTR
CCATGATAAGGTTGGCTTTA+CGG 0.274945 2_1:+73347610 Msa0223710:CDS
TCTCGGGTGGCTGGTGGAGG+AGG 0.303392 2_1:-73347576 None:intergenic
TCAGGCAGCATATAGTATAT+TGG 0.304154 2_1:+73348878 Msa0223710:three_prime_UTR
TTCTGGTGTGTATCATGTTC+GGG 0.310325 2_1:+73348911 Msa0223710:three_prime_UTR
CCTCAATCTCTCTGATATTT+CGG 0.319830 2_1:-73348693 None:intergenic
CTATTCGCTTTGCTTAAATC+TGG 0.323238 2_1:+73345364 Msa0223710:five_prime_UTR
AAATACAATTCTGAACGATT+TGG 0.340360 2_1:+73348627 Msa0223710:CDS
TTACTCGCGAACGGCGGTTA+TGG 0.347299 2_1:-73347467 None:intergenic
AATGTAATTCTATCAACATT+TGG 0.351343 2_1:+73348820 Msa0223710:three_prime_UTR
CGAGTAAATAACAAGCTAAT+TGG 0.351629 2_1:+73347483 Msa0223710:CDS
CTGGGTTTCTCTACTTGGTA+TGG 0.352595 2_1:+73345031 Msa0223710:five_prime_UTR
CAGGCAGCATATAGTATATT+GGG 0.358188 2_1:+73348879 Msa0223710:three_prime_UTR
TTTCTGGTGTGTATCATGTT+CGG 0.364987 2_1:+73348910 Msa0223710:three_prime_UTR
ATGCAAGGATACAATGGATA+TGG 0.368107 2_1:-73348997 None:intergenic
TCATGGCTTGACAACCTTCT+CGG 0.378795 2_1:-73347593 None:intergenic
GAAAACTTCAAATTGCGAAT+AGG 0.381872 2_1:-73348796 None:intergenic
CCTTCTCGGGTGGCTGGTGG+AGG 0.389419 2_1:-73347579 None:intergenic
GAAGTTCCATGGCGAGGATC+CGG 0.395395 2_1:+73347699 Msa0223710:CDS
CTCACTAACCAAGTGCTTCC+CGG 0.404686 2_1:-73347718 None:intergenic
CATGGCTTGACAACCTTCTC+GGG 0.412731 2_1:-73347592 None:intergenic
AAGTATCTCACCAGAATGTC+TGG 0.414991 2_1:-73348770 None:intergenic
AGTGGTCATATTAAAACTTC+AGG 0.420723 2_1:+73348860 Msa0223710:three_prime_UTR
TGACAACCTTCTCGGGTGGC+TGG 0.424878 2_1:-73347585 None:intergenic
TTCAACAAGAGCAGCATGTT+AGG 0.440712 2_1:-73348955 None:intergenic
TCCTCGCCATGGAACTTCAC+TGG 0.443266 2_1:-73347694 None:intergenic
AGGATGATGGATCACCAATC+TGG 0.443741 2_1:+73347192 Msa0223710:intron
GACACATTAGAACCATTCAT+AGG 0.454194 2_1:+73347363 Msa0223710:CDS
TGTCACAGGACGAGAAAGAT+AGG 0.454669 2_1:+73348524 Msa0223710:intron
AATCAAATCCCTGGCCAGAT+TGG 0.455766 2_1:-73347206 None:intergenic
CGAACAACCTGTAGCAGATT+CGG 0.459103 2_1:+73347341 Msa0223710:CDS
CCGAAATATCAGAGAGATTG+AGG 0.462386 2_1:+73348693 Msa0223710:CDS
CTCGGGTGGCTGGTGGAGGA+GGG 0.466145 2_1:-73347575 None:intergenic
GACCGTTTGTGCAACTGAAT+GGG 0.466396 2_1:-73345136 None:intergenic
ATCAACATTTGGCTTGAAGT+TGG 0.469414 2_1:+73348831 Msa0223710:three_prime_UTR
AAATGGTTTACCTATTATCC+AGG 0.470951 2_1:-73345412 None:intergenic
CTGGCAACAATGGAATATAC+TGG 0.471446 2_1:-73348751 None:intergenic
AATAAATCAAAATGTGCAGC+TGG 0.482642 2_1:-73349039 None:intergenic
GATGGATCACCAATCTGGCC+AGG 0.492007 2_1:+73347197 Msa0223710:CDS
CAACCTTCTCGGGTGGCTGG+TGG 0.497367 2_1:-73347582 None:intergenic
AGGTTGGCTTTACGGGATGA+AGG 0.498475 2_1:+73347618 Msa0223710:CDS
AGACATTCTGGTGAGATACT+TGG 0.500017 2_1:+73348772 Msa0223710:three_prime_UTR
TATTATCCAGGTTGAAAACT+AGG 0.501348 2_1:-73345400 None:intergenic
AAGTTCCATGGCGAGGATCC+GGG 0.502060 2_1:+73347700 Msa0223710:CDS
TCAAATTACAACAAAGGTGA+AGG 0.504520 2_1:-73345106 None:intergenic
AAGGTTGTCAAGCCATGATA+AGG 0.504631 2_1:+73347598 Msa0223710:CDS
ACGAAAGGCAAAAGTACAAA+AGG 0.509895 2_1:+73348578 Msa0223710:CDS
CTTTACGGGATGAAGGGAAG+TGG 0.510166 2_1:+73347625 Msa0223710:CDS
TGACCGTTTGTGCAACTGAA+TGG 0.513615 2_1:-73345137 None:intergenic
CCTCGCCATGGAACTTCACT+GGG 0.518653 2_1:-73347693 None:intergenic
AATGGCTATGGTAGGAGGAT+AGG 0.518960 2_1:+73347426 Msa0223710:CDS
AATGTGTCCGAATCTGCTAC+AGG 0.521451 2_1:-73347348 None:intergenic
AACAATTTAGAATTATGTAC+AGG 0.522470 2_1:+73347300 Msa0223710:CDS
CGCTCGAGTTGCACAACGAA+AGG 0.523644 2_1:+73348563 Msa0223710:CDS
CCGTAAAGCCAACCTTATCA+TGG 0.524530 2_1:-73347610 None:intergenic
CTTCTGCTATAATAGGATGA+TGG 0.528986 2_1:+73347179 Msa0223710:intron
GGTATGGAGTAGTTCTTCCA+TGG 0.537659 2_1:+73345047 Msa0223710:five_prime_UTR
ACCAGAATGTCTGGCAACAA+TGG 0.538189 2_1:-73348761 None:intergenic
GCGAGGATCCGGGAAGCACT+TGG 0.541373 2_1:+73347710 Msa0223710:CDS
CCTCCACCAGCCACCCGAGA+AGG 0.543028 2_1:+73347579 Msa0223710:CDS
AGAGAATTCTACAATGGCTA+TGG 0.545280 2_1:+73347414 Msa0223710:CDS
AAGGTGAAGGGAATAAGAGA+AGG 0.553305 2_1:-73345093 None:intergenic
TCAGTTGCACAAACGGTCAT+CGG 0.553312 2_1:+73345141 Msa0223710:five_prime_UTR
CAATTAATGCAAGGATACAA+TGG 0.556643 2_1:-73349003 None:intergenic
TGCTTCCCGGATCCTCGCCA+TGG 0.557183 2_1:-73347705 None:intergenic
TTTACGGGATGAAGGGAAGT+GGG 0.561477 2_1:+73347626 Msa0223710:CDS
GGCCAGGGATTTGATTCAGA+TGG 0.568231 2_1:+73347213 Msa0223710:CDS
GGTTGGCTTTACGGGATGAA+GGG 0.571058 2_1:+73347619 Msa0223710:CDS
TAGGCATGCAGTTCAACTCA+AGG 0.572467 2_1:+73347382 Msa0223710:CDS
CGGAGTCACTGCACTAACCA+TGG 0.573921 2_1:-73345064 None:intergenic
GGAATAAGAGAAGGGTTCCT+CGG 0.579433 2_1:-73345084 None:intergenic
TACCATCTGAATCAAATCCC+TGG 0.581654 2_1:-73347215 None:intergenic
GCTTGAAGTTGGTTGTGTAG+TGG 0.583684 2_1:+73348842 Msa0223710:three_prime_UTR
GCTTGTTATTTACTCGCGAA+CGG 0.583871 2_1:-73347476 None:intergenic
GGAGGATAGGATTTACAGTA+CGG 0.583900 2_1:+73347439 Msa0223710:CDS
ACCGTTTGTGCAACTGAATG+GGG 0.586705 2_1:-73345135 None:intergenic
AATTCTACAATGGCTATGGT+AGG 0.591454 2_1:+73347418 Msa0223710:CDS
CAAATTACAACAAAGGTGAA+GGG 0.591945 2_1:-73345105 None:intergenic
TCTACAATGGCTATGGTAGG+AGG 0.594374 2_1:+73347421 Msa0223710:CDS
ATTCGATTACAATTAATGCA+AGG 0.594392 2_1:-73349012 None:intergenic
TTGTCAAGCCATGATAAGGT+TGG 0.599156 2_1:+73347602 Msa0223710:CDS
CCCAGTGAAGTTCCATGGCG+AGG 0.602502 2_1:+73347693 Msa0223710:CDS
TTGAACTGCATGCCTATGAA+TGG 0.604946 2_1:-73347375 None:intergenic
GGTTGTTCAAATTACAACAA+AGG 0.606807 2_1:-73345112 None:intergenic
TGAGTCCCAGTGAAGTTCCA+TGG 0.607822 2_1:+73347688 Msa0223710:CDS
ATGGATCACCAATCTGGCCA+GGG 0.613451 2_1:+73347198 Msa0223710:CDS
GGCTTGACAACCTTCTCGGG+TGG 0.617601 2_1:-73347589 None:intergenic
GGTTGTCACCAAATTTGTGA+AGG 0.624088 2_1:+73347647 Msa0223710:CDS
CGGGAAGCACTTGGTTAGTG+AGG 0.627824 2_1:+73347719 Msa0223710:CDS
AATGGATATGGTTAGTCACA+AGG 0.628549 2_1:-73348985 None:intergenic
ATGGATATGGTTAGTCACAA+GGG 0.630431 2_1:-73348984 None:intergenic
AGGCATGCAGTTCAACTCAA+GGG 0.634792 2_1:+73347383 Msa0223710:CDS
TGTTATTTACTCGCGAACGG+CGG 0.635708 2_1:-73347473 None:intergenic
GAAGCAAGAGAATTCTACAA+TGG 0.641349 2_1:+73347408 Msa0223710:CDS
AGGTGAAGGGAATAAGAGAA+GGG 0.642031 2_1:-73345092 None:intergenic
GCAACTCGAGCGATAGCTCA+CGG 0.642945 2_1:-73348552 None:intergenic
CCGTTTGTGCAACTGAATGG+GGG 0.663973 2_1:-73345134 None:intergenic
CGTTTGTGCAACTGAATGGG+GGG 0.675559 2_1:-73345133 None:intergenic
TGGTTAGTGCAGTGACTCCG+AGG 0.685287 2_1:+73345067 Msa0223710:five_prime_UTR
CATGCAGTTCAACTCAAGGG+AGG 0.700261 2_1:+73347386 Msa0223710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATCATTTATTCTTTTT+TGG + chr2_1:73346817-73346836 Msa0223710:intron 10.0%
!! ATTAATGTTTATGATTATTA+TGG + chr2_1:73346853-73346872 Msa0223710:intron 10.0%
!! TTAATGTTTATGATTATTAT+GGG + chr2_1:73346854-73346873 Msa0223710:intron 10.0%
!! ATATAAATATTTATGATCAA+TGG - chr2_1:73346977-73346996 None:intergenic 10.0%
!! AATATTTATATTTCCAAACA+AGG + chr2_1:73346986-73347005 Msa0223710:intron 15.0%
!! TGTAAGTAATAACAAACAAA+GGG + chr2_1:73345188-73345207 Msa0223710:intron 20.0%
!! AAGTTGGAATATTGAAAAAT+GGG - chr2_1:73345242-73345261 None:intergenic 20.0%
!! AAAGTTGGAATATTGAAAAA+TGG - chr2_1:73345243-73345262 None:intergenic 20.0%
!!! GAAACAAATTAATTCTGAAA+TGG - chr2_1:73345454-73345473 None:intergenic 20.0%
!!! GAGTTAAATTATACATTTTC+CGG - chr2_1:73345494-73345513 None:intergenic 20.0%
!! AACAACTAATTAGTAACATT+TGG - chr2_1:73345626-73345645 None:intergenic 20.0%
!! AATTAGGATAGTATTTATTG+CGG + chr2_1:73345990-73346009 Msa0223710:intron 20.0%
!! GATTGTATTTGTAATTGAAT+AGG + chr2_1:73346678-73346697 Msa0223710:intron 20.0%
!!! AATAGGAAAGAATTTTTGTT+GGG + chr2_1:73346695-73346714 Msa0223710:intron 20.0%
!!! AATCATTTATTCTTTTTTGG+TGG + chr2_1:73346820-73346839 Msa0223710:intron 20.0%
!! AGATATTCACATATTCTTAA+TGG - chr2_1:73346882-73346901 None:intergenic 20.0%
!!! AACAATTTAGAATTATGTAC+AGG + chr2_1:73347300-73347319 Msa0223710:CDS 20.0%
!! TATCAAAATACAGATTCTTA+TGG + chr2_1:73348017-73348036 Msa0223710:intron 20.0%
!!! TTTTAGAATATCTTATCTCT+GGG + chr2_1:73348043-73348062 Msa0223710:intron 20.0%
!! GACTATATTATGTATATTCT+TGG - chr2_1:73348280-73348299 None:intergenic 20.0%
!! AATGTAATTCTATCAACATT+TGG + chr2_1:73348820-73348839 Msa0223710:three_prime_UTR 20.0%
! GTGTAAGTAATAACAAACAA+AGG + chr2_1:73345187-73345206 Msa0223710:intron 25.0%
! TTTCTGAACTCAATTGAAAT+GGG + chr2_1:73345260-73345279 Msa0223710:intron 25.0%
!! GAATTTTGCCTTAAGTAATT+TGG + chr2_1:73346024-73346043 Msa0223710:intron 25.0%
! ATACATGTCCAAATTACTTA+AGG - chr2_1:73346035-73346054 None:intergenic 25.0%
! TTAAGTAATTTGGACATGTA+TGG + chr2_1:73346034-73346053 Msa0223710:intron 25.0%
!! GAATAGGAAAGAATTTTTGT+TGG + chr2_1:73346694-73346713 Msa0223710:intron 25.0%
! TATCTTGGACATATTAGATT+TGG + chr2_1:73346789-73346808 Msa0223710:intron 25.0%
! ATCTTGGACATATTAGATTT+GGG + chr2_1:73346790-73346809 Msa0223710:intron 25.0%
!! ATCTTTTTGCTAATAGCTTA+TGG + chr2_1:73346898-73346917 Msa0223710:intron 25.0%
! ACATTATGAATAGCACTAAA+TGG - chr2_1:73346948-73346967 None:intergenic 25.0%
! GAAACAGGAAAATAAAAAAG+AGG + chr2_1:73347021-73347040 Msa0223710:intron 25.0%
! TAAACTATAAAGTGCACTAT+TGG - chr2_1:73347754-73347773 None:intergenic 25.0%
!!! TTCTAGAATACCTTATCTAT+GGG + chr2_1:73347946-73347965 Msa0223710:intron 25.0%
!!! CTTTTAGAATATCTTATCTC+TGG + chr2_1:73348042-73348061 Msa0223710:intron 25.0%
! TAAAAGAGTTAATACAATCC+TGG - chr2_1:73348357-73348376 None:intergenic 25.0%
!! AGGATTGTATTAACTCTTTT+AGG + chr2_1:73348356-73348375 Msa0223710:intron 25.0%
!! GGATTGTATTAACTCTTTTA+GGG + chr2_1:73348357-73348376 Msa0223710:intron 25.0%
! AAATACAATTCTGAACGATT+TGG + chr2_1:73348627-73348646 Msa0223710:CDS 25.0%
! GAAGAAAAATCAGATTTAGA+TGG + chr2_1:73348715-73348734 Msa0223710:CDS 25.0%
!! ATATTGGGAAATTCATTTTC+TGG + chr2_1:73348894-73348913 Msa0223710:three_prime_UTR 25.0%
! ATTCGATTACAATTAATGCA+AGG - chr2_1:73349015-73349034 None:intergenic 25.0%
CAAATTACAACAAAGGTGAA+GGG - chr2_1:73345108-73345127 None:intergenic 30.0%
TCAAATTACAACAAAGGTGA+AGG - chr2_1:73345109-73345128 None:intergenic 30.0%
GGTTGTTCAAATTACAACAA+AGG - chr2_1:73345115-73345134 None:intergenic 30.0%
TGGAATATTGAAAAATGGGA+GGG - chr2_1:73345238-73345257 None:intergenic 30.0%
TTGGAATATTGAAAAATGGG+AGG - chr2_1:73345239-73345258 None:intergenic 30.0%
TTCAATTGAGTTCAGAAAGT+TGG - chr2_1:73345258-73345277 None:intergenic 30.0%
CTTTCTGAACTCAATTGAAA+TGG + chr2_1:73345259-73345278 Msa0223710:intron 30.0%
! TATTATCCAGGTTGAAAACT+AGG - chr2_1:73345403-73345422 None:intergenic 30.0%
! TAGTTTTCAACCTGGATAAT+AGG + chr2_1:73345402-73345421 Msa0223710:five_prime_UTR 30.0%
AAATGGTTTACCTATTATCC+AGG - chr2_1:73345415-73345434 None:intergenic 30.0%
GAAGAAGAAGATGAAGAAAA+TGG - chr2_1:73345432-73345451 None:intergenic 30.0%
TACATAACATGGATTTGAGT+GGG + chr2_1:73345720-73345739 Msa0223710:intron 30.0%
AAATTGATTGCATAACTTGG+AGG - chr2_1:73345803-73345822 None:intergenic 30.0%
AAAAGACTTGTGATGTTGTA+TGG + chr2_1:73345837-73345856 Msa0223710:intron 30.0%
GATGCATTAGCAAGAAAATT+AGG + chr2_1:73345974-73345993 Msa0223710:intron 30.0%
AGGTACATTTAGACCAATAT+TGG + chr2_1:73346126-73346145 Msa0223710:intron 30.0%
!! ATTTAGACCAATATTGGCTT+TGG + chr2_1:73346132-73346151 Msa0223710:intron 30.0%
TAAAGTTGAGTAAGATAGCA+TGG - chr2_1:73346201-73346220 None:intergenic 30.0%
TCAACTTTATCTTGAGCTTT+GGG + chr2_1:73346212-73346231 Msa0223710:intron 30.0%
!!! TTGGAATATGGTTTTGACAA+GGG - chr2_1:73346357-73346376 None:intergenic 30.0%
!!! TTTGGAATATGGTTTTGACA+AGG - chr2_1:73346358-73346377 None:intergenic 30.0%
! AGACAGAAATGTTTGGAATA+TGG - chr2_1:73346369-73346388 None:intergenic 30.0%
TCGAAATAGACAGAAATGTT+TGG - chr2_1:73346376-73346395 None:intergenic 30.0%
!!! AAATGTTTTTTGATAGGCGA+AGG - chr2_1:73346750-73346769 None:intergenic 30.0%
TTCGCCTATCAAAAAACATT+TGG + chr2_1:73346749-73346768 Msa0223710:intron 30.0%
!!! AGCACCAAATGTTTTTTGAT+AGG - chr2_1:73346756-73346775 None:intergenic 30.0%
TTTGCTAATAGCTTATGGAT+AGG + chr2_1:73346903-73346922 Msa0223710:intron 30.0%
! TTAGTGCTATTCATAATGTG+AGG + chr2_1:73346949-73346968 Msa0223710:intron 30.0%
! CTTTTGTTAATCTCCTTGTT+TGG - chr2_1:73347002-73347021 None:intergenic 30.0%
AGGAGATTAACAAAAGAAAC+AGG + chr2_1:73347006-73347025 Msa0223710:intron 30.0%
TTTCAGCTGTTAGTAATTAC+TGG + chr2_1:73347082-73347101 Msa0223710:intron 30.0%
TTGTGTACTTCTGCTATAAT+AGG + chr2_1:73347172-73347191 Msa0223710:intron 30.0%
CGAGTAAATAACAAGCTAAT+TGG + chr2_1:73347483-73347502 Msa0223710:CDS 30.0%
TGTATGTTCCTTCACAAATT+TGG - chr2_1:73347658-73347677 None:intergenic 30.0%
TATGTATACCTGATCAAACT+TGG + chr2_1:73347785-73347804 Msa0223710:intron 30.0%
TAGCAAAATACAGATTCTCA+TGG + chr2_1:73347920-73347939 Msa0223710:intron 30.0%
!! CTTCTAGAATACCTTATCTA+TGG + chr2_1:73347945-73347964 Msa0223710:intron 30.0%
! TAGCAAGAGAATTTAAGACA+TGG - chr2_1:73348217-73348236 None:intergenic 30.0%
! ATTCTTGGTGTAATATCGAT+AGG - chr2_1:73348265-73348284 None:intergenic 30.0%
!!! TGGTTGAGATTTTTTTTAGG+GGG - chr2_1:73348337-73348356 None:intergenic 30.0%
!!! CTGGTTGAGATTTTTTTTAG+GGG - chr2_1:73348338-73348357 None:intergenic 30.0%
!!! CCTGGTTGAGATTTTTTTTA+GGG - chr2_1:73348339-73348358 None:intergenic 30.0%
!!! TCCTGGTTGAGATTTTTTTT+AGG - chr2_1:73348340-73348359 None:intergenic 30.0%
ATTAAAAGTCCCATCTCAAT+CGG + chr2_1:73348381-73348400 Msa0223710:intron 30.0%
GTATAGTTCAGTTCTTTGTT+AGG + chr2_1:73348441-73348460 Msa0223710:intron 30.0%
AAAAAGGAACAAACAGAACA+TGG - chr2_1:73348476-73348495 None:intergenic 30.0%
! ACAAGTTTGAGGTAGAAAAA+AGG - chr2_1:73348492-73348511 None:intergenic 30.0%
AAATCAACAAGACAAGTTTG+AGG - chr2_1:73348503-73348522 None:intergenic 30.0%
AAAAATCAGATTTAGATGGC+AGG + chr2_1:73348719-73348738 Msa0223710:CDS 30.0%
GAAAACTTCAAATTGCGAAT+AGG - chr2_1:73348799-73348818 None:intergenic 30.0%
AGTGGTCATATTAAAACTTC+AGG + chr2_1:73348860-73348879 Msa0223710:three_prime_UTR 30.0%
CAATTAATGCAAGGATACAA+TGG - chr2_1:73349006-73349025 None:intergenic 30.0%
AATAAATCAAAATGTGCAGC+TGG - chr2_1:73349042-73349061 None:intergenic 30.0%
TTAACATACTACATGCTTGC+AGG + chr2_1:73345336-73345355 Msa0223710:intron 35.0%
CTATTCGCTTTGCTTAAATC+TGG + chr2_1:73345364-73345383 Msa0223710:five_prime_UTR 35.0%
! TCTGTCTTTGTTTCTTTGTC+CGG + chr2_1:73345472-73345491 Msa0223710:intron 35.0%
TCAAACCAACCTACATAACA+TGG + chr2_1:73345709-73345728 Msa0223710:intron 35.0%
CAAATCCATGTTATGTAGGT+TGG - chr2_1:73345717-73345736 None:intergenic 35.0%
CACTCAAATCCATGTTATGT+AGG - chr2_1:73345721-73345740 None:intergenic 35.0%
CTACATAACATGGATTTGAG+TGG + chr2_1:73345719-73345738 Msa0223710:intron 35.0%
GGCAAATTGATTGCATAACT+TGG - chr2_1:73345806-73345825 None:intergenic 35.0%
!! CAAGTCTTTTTAACTACACG+CGG - chr2_1:73345827-73345846 None:intergenic 35.0%
GTTGTATGGAAGTGAGTATT+AGG + chr2_1:73345851-73345870 Msa0223710:intron 35.0%
GGACAGGACAAAATAGTATT+AGG + chr2_1:73345947-73345966 Msa0223710:intron 35.0%
ATTTGGACATGTATGGAGAT+TGG + chr2_1:73346041-73346060 Msa0223710:intron 35.0%
ATATACGTAGAAGCTTCGAT+AGG + chr2_1:73346067-73346086 Msa0223710:intron 35.0%
TATACGTAGAAGCTTCGATA+GGG + chr2_1:73346068-73346087 Msa0223710:intron 35.0%
GAGAATCTCACAATTGTTAG+AGG + chr2_1:73346106-73346125 Msa0223710:intron 35.0%
GAATGAACCAAAGCCAATAT+TGG - chr2_1:73346142-73346161 None:intergenic 35.0%
CTCAACTTTATCTTGAGCTT+TGG + chr2_1:73346211-73346230 Msa0223710:intron 35.0%
TATAGAGTCATGTCTATCAC+AGG - chr2_1:73346469-73346488 None:intergenic 35.0%
CATATCGTATTCTTGCCTAT+CGG + chr2_1:73346522-73346541 Msa0223710:intron 35.0%
TAAGTCGTGAACACTATTGT+TGG - chr2_1:73346638-73346657 None:intergenic 35.0%
ACAATAGTGTTCACGACTTA+AGG + chr2_1:73346638-73346657 Msa0223710:intron 35.0%
! TTTTGATAGGCGAAGGTTAA+GGG - chr2_1:73346743-73346762 None:intergenic 35.0%
! TTTTTGATAGGCGAAGGTTA+AGG - chr2_1:73346744-73346763 None:intergenic 35.0%
!! CAAAAAACATTTGGTGCTGT+TGG + chr2_1:73346758-73346777 Msa0223710:intron 35.0%
!! CTGTTGGTTCTGTATTATCT+TGG + chr2_1:73346774-73346793 Msa0223710:intron 35.0%
TAGCTTATGGATAGGATGAT+TGG + chr2_1:73346911-73346930 Msa0223710:intron 35.0%
ACAGTTCATCAGAAAACGTA+AGG - chr2_1:73347129-73347148 None:intergenic 35.0%
CTTCTGCTATAATAGGATGA+TGG + chr2_1:73347179-73347198 Msa0223710:intron 35.0%
GACACATTAGAACCATTCAT+AGG + chr2_1:73347363-73347382 Msa0223710:CDS 35.0%
GAAGCAAGAGAATTCTACAA+TGG + chr2_1:73347408-73347427 Msa0223710:CDS 35.0%
AGAGAATTCTACAATGGCTA+TGG + chr2_1:73347414-73347433 Msa0223710:CDS 35.0%
AATTCTACAATGGCTATGGT+AGG + chr2_1:73347418-73347437 Msa0223710:CDS 35.0%
! GATTTTGTCTGCTCAAAAGA+AGG + chr2_1:73347510-73347529 Msa0223710:CDS 35.0%
!! GTCAGTCTCACTTTTAAATC+TGG - chr2_1:73347811-73347830 None:intergenic 35.0%
GAAAAATGTGAGTGAAGGTT+TGG - chr2_1:73347974-73347993 None:intergenic 35.0%
GAAAATTGTGAGTGAAGGTT+TGG - chr2_1:73348071-73348090 None:intergenic 35.0%
TTTCCACCTAAGATAGAATG+AGG + chr2_1:73348238-73348257 Msa0223710:intron 35.0%
TTCCACCTAAGATAGAATGA+GGG + chr2_1:73348239-73348258 Msa0223710:intron 35.0%
!!! TTGAGATTTTTTTTAGGGGG+TGG - chr2_1:73348334-73348353 None:intergenic 35.0%
CCCTAAAAAAAATCTCAACC+AGG + chr2_1:73348336-73348355 Msa0223710:intron 35.0%
TTACATGCAGATGTTGGATT+AGG + chr2_1:73348404-73348423 Msa0223710:intron 35.0%
! ACGAAAGGCAAAAGTACAAA+AGG + chr2_1:73348578-73348597 Msa0223710:CDS 35.0%
CCTCAATCTCTCTGATATTT+CGG - chr2_1:73348696-73348715 None:intergenic 35.0%
!! ATCAACATTTGGCTTGAAGT+TGG + chr2_1:73348831-73348850 Msa0223710:three_prime_UTR 35.0%
TCAGGCAGCATATAGTATAT+TGG + chr2_1:73348878-73348897 Msa0223710:three_prime_UTR 35.0%
CAGGCAGCATATAGTATATT+GGG + chr2_1:73348879-73348898 Msa0223710:three_prime_UTR 35.0%
! TTTCTGGTGTGTATCATGTT+CGG + chr2_1:73348910-73348929 Msa0223710:three_prime_UTR 35.0%
! ATGGATATGGTTAGTCACAA+GGG - chr2_1:73348987-73349006 None:intergenic 35.0%
! AATGGATATGGTTAGTCACA+AGG - chr2_1:73348988-73349007 None:intergenic 35.0%
ATGCAAGGATACAATGGATA+TGG - chr2_1:73349000-73349019 None:intergenic 35.0%
AGGTGAAGGGAATAAGAGAA+GGG - chr2_1:73345095-73345114 None:intergenic 40.0%
AAGGTGAAGGGAATAAGAGA+AGG - chr2_1:73345096-73345115 None:intergenic 40.0%
CGACGCATTCATTGTTGAAA+TGG + chr2_1:73345286-73345305 Msa0223710:intron 40.0%
!! TCTTCTCCTAGTTTTCAACC+TGG + chr2_1:73345394-73345413 Msa0223710:five_prime_UTR 40.0%
!! ATGTAGGTTGGTTTGAGCTA+GGG - chr2_1:73345705-73345724 None:intergenic 40.0%
!! TATGTAGGTTGGTTTGAGCT+AGG - chr2_1:73345706-73345725 None:intergenic 40.0%
ATAACATGGATTTGAGTGGG+TGG + chr2_1:73345723-73345742 Msa0223710:intron 40.0%
ATTTGAGTGGGTGGATAAAG+TGG + chr2_1:73345732-73345751 Msa0223710:intron 40.0%
!! TAGGCTGCAAAGAGTTGATA+TGG + chr2_1:73345870-73345889 Msa0223710:intron 40.0%
ACAATGAGTCATTGAAAGCG+CGG + chr2_1:73345926-73345945 Msa0223710:intron 40.0%
!! GTTGAGCTTCTGAGTTTTGA+TGG - chr2_1:73346301-73346320 None:intergenic 40.0%
GTGGTCAGAAAAAGTCAAAG+GGG - chr2_1:73346412-73346431 None:intergenic 40.0%
CGTGGTCAGAAAAAGTCAAA+GGG - chr2_1:73346413-73346432 None:intergenic 40.0%
GAAGGAGTTAATTGACCGAT+AGG - chr2_1:73346540-73346559 None:intergenic 40.0%
TTATCTAGAAGCTGTGGTGA+AGG - chr2_1:73346558-73346577 None:intergenic 40.0%
ATAGTGTTCACGACTTAAGG+TGG + chr2_1:73346641-73346660 Msa0223710:intron 40.0%
GGATGCACTAGTCAATCAAT+TGG + chr2_1:73346716-73346735 Msa0223710:intron 40.0%
! CGTTTTCTGATGAACTGTGA+AGG + chr2_1:73347131-73347150 Msa0223710:intron 40.0%
TACCATCTGAATCAAATCCC+TGG - chr2_1:73347218-73347237 None:intergenic 40.0%
TTGAACTGCATGCCTATGAA+TGG - chr2_1:73347378-73347397 None:intergenic 40.0%
GGAGGATAGGATTTACAGTA+CGG + chr2_1:73347439-73347458 Msa0223710:CDS 40.0%
!! GCTTGTTATTTACTCGCGAA+CGG - chr2_1:73347479-73347498 None:intergenic 40.0%
AAGGTTGTCAAGCCATGATA+AGG + chr2_1:73347598-73347617 Msa0223710:CDS 40.0%
TTGTCAAGCCATGATAAGGT+TGG + chr2_1:73347602-73347621 Msa0223710:CDS 40.0%
!! CCATGATAAGGTTGGCTTTA+CGG + chr2_1:73347610-73347629 Msa0223710:CDS 40.0%
!! CATGATAAGGTTGGCTTTAC+GGG + chr2_1:73347611-73347630 Msa0223710:CDS 40.0%
GGTTGTCACCAAATTTGTGA+AGG + chr2_1:73347647-73347666 Msa0223710:CDS 40.0%
AAATCTGGCCAAGTTTGATC+AGG - chr2_1:73347796-73347815 None:intergenic 40.0%
GTCAATCTAATATCAGCAGC+TGG - chr2_1:73347854-73347873 None:intergenic 40.0%
AGATTGACAACAGTATCAGC+AGG + chr2_1:73347866-73347885 Msa0223710:intron 40.0%
! AGGTTTGGAACCCATAGATA+AGG - chr2_1:73347959-73347978 None:intergenic 40.0%
! TTCGAGTTCATCATGTAGAG+CGG - chr2_1:73347997-73348016 None:intergenic 40.0%
TCAGTGAGGGACTTAGAAAA+GGG - chr2_1:73348113-73348132 None:intergenic 40.0%
ATCAGTGAGGGACTTAGAAA+AGG - chr2_1:73348114-73348133 None:intergenic 40.0%
! GGATTTTGTTGGATCAGTGA+GGG - chr2_1:73348126-73348145 None:intergenic 40.0%
TGATGCAAATGGAAGGGAAA+GGG - chr2_1:73348147-73348166 None:intergenic 40.0%
ATAGGCCCTCATTCTATCTT+AGG - chr2_1:73348247-73348266 None:intergenic 40.0%
!!! AGATTTTTTTTAGGGGGTGG+AGG - chr2_1:73348331-73348350 None:intergenic 40.0%
TGCATGTAACCGATTGAGAT+GGG - chr2_1:73348393-73348412 None:intergenic 40.0%
AATCGGTTACATGCAGATGT+TGG + chr2_1:73348398-73348417 Msa0223710:intron 40.0%
!! GTCTTGTTGATTTGTGTCAC+AGG + chr2_1:73348510-73348529 Msa0223710:intron 40.0%
CCGAAATATCAGAGAGATTG+AGG + chr2_1:73348693-73348712 Msa0223710:CDS 40.0%
CTGGCAACAATGGAATATAC+TGG - chr2_1:73348754-73348773 None:intergenic 40.0%
AAGTATCTCACCAGAATGTC+TGG - chr2_1:73348773-73348792 None:intergenic 40.0%
AGACATTCTGGTGAGATACT+TGG + chr2_1:73348772-73348791 Msa0223710:three_prime_UTR 40.0%
TTCTGGTGTGTATCATGTTC+GGG + chr2_1:73348911-73348930 Msa0223710:three_prime_UTR 40.0%
TTCAACAAGAGCAGCATGTT+AGG - chr2_1:73348958-73348977 None:intergenic 40.0%
TGTTGCTGGGTTTCTCTACT+TGG + chr2_1:73345026-73345045 Msa0223710:five_prime_UTR 45.0%
CTGGGTTTCTCTACTTGGTA+TGG + chr2_1:73345031-73345050 Msa0223710:five_prime_UTR 45.0%
GGTATGGAGTAGTTCTTCCA+TGG + chr2_1:73345047-73345066 Msa0223710:five_prime_UTR 45.0%
GGAATAAGAGAAGGGTTCCT+CGG - chr2_1:73345087-73345106 None:intergenic 45.0%
ACCGTTTGTGCAACTGAATG+GGG - chr2_1:73345138-73345157 None:intergenic 45.0%
GACCGTTTGTGCAACTGAAT+GGG - chr2_1:73345139-73345158 None:intergenic 45.0%
TGACCGTTTGTGCAACTGAA+TGG - chr2_1:73345140-73345159 None:intergenic 45.0%
TCAGTTGCACAAACGGTCAT+CGG + chr2_1:73345141-73345160 Msa0223710:five_prime_UTR 45.0%
TTTCGTCCAAGTTTGAGCTG+AGG + chr2_1:73345662-73345681 Msa0223710:intron 45.0%
! TTGGTTTGAGCTAGGGGATA+AGG - chr2_1:73345698-73345717 None:intergenic 45.0%
!! TGTAGGTTGGTTTGAGCTAG+GGG - chr2_1:73345704-73345723 None:intergenic 45.0%
TGATTGCATAACTTGGAGGC+TGG - chr2_1:73345799-73345818 None:intergenic 45.0%
GATAGGGAGGGTAGATCAAA+TGG + chr2_1:73346084-73346103 Msa0223710:intron 45.0%
GTGACACGTTGAACCAATGA+GGG + chr2_1:73346173-73346192 Msa0223710:intron 45.0%
!! GCTTTGAGGTGTAGGAGAAA+TGG - chr2_1:73346245-73346264 None:intergenic 45.0%
!! AATCAGAGGCTTTGAGGTGT+AGG - chr2_1:73346253-73346272 None:intergenic 45.0%
ACACCTCAAAGCCTCTGATT+AGG + chr2_1:73346253-73346272 Msa0223710:intron 45.0%
CACCTCAAAGCCTCTGATTA+GGG + chr2_1:73346254-73346273 Msa0223710:intron 45.0%
ACCTCAAAGCCTCTGATTAG+GGG + chr2_1:73346255-73346274 Msa0223710:intron 45.0%
!! AGTTTTGATGGCACTCACCT+AGG - chr2_1:73346289-73346308 None:intergenic 45.0%
TTACTATCCGATTCCGCTAG+CGG - chr2_1:73346332-73346351 None:intergenic 45.0%
GCGTGGTCAGAAAAAGTCAA+AGG - chr2_1:73346414-73346433 None:intergenic 45.0%
!! ACTTTTTCTGACCACGCGAA+TGG + chr2_1:73346417-73346436 Msa0223710:intron 45.0%
! CTTTTTCTGACCACGCGAAT+GGG + chr2_1:73346418-73346437 Msa0223710:intron 45.0%
! TTTTTCTGACCACGCGAATG+GGG + chr2_1:73346419-73346438 Msa0223710:intron 45.0%
AGAGTCATGTCTATCACAGG+TGG - chr2_1:73346466-73346485 None:intergenic 45.0%
CGTGTCTTATCTAGAAGCTG+TGG - chr2_1:73346564-73346583 None:intergenic 45.0%
AGCTGTCAGAAACACTGTCA+TGG - chr2_1:73346594-73346613 None:intergenic 45.0%
!! AGGATGATGGATCACCAATC+TGG + chr2_1:73347192-73347211 Msa0223710:intron 45.0%
AATCAAATCCCTGGCCAGAT+TGG - chr2_1:73347209-73347228 None:intergenic 45.0%
CGAACAACCTGTAGCAGATT+CGG + chr2_1:73347341-73347360 Msa0223710:CDS 45.0%
AATGTGTCCGAATCTGCTAC+AGG - chr2_1:73347351-73347370 None:intergenic 45.0%
TAGGCATGCAGTTCAACTCA+AGG + chr2_1:73347382-73347401 Msa0223710:CDS 45.0%
AGGCATGCAGTTCAACTCAA+GGG + chr2_1:73347383-73347402 Msa0223710:CDS 45.0%
TCTACAATGGCTATGGTAGG+AGG + chr2_1:73347421-73347440 Msa0223710:CDS 45.0%
AATGGCTATGGTAGGAGGAT+AGG + chr2_1:73347426-73347445 Msa0223710:CDS 45.0%
! TGTTATTTACTCGCGAACGG+CGG - chr2_1:73347476-73347495 None:intergenic 45.0%
TCATGGCTTGACAACCTTCT+CGG - chr2_1:73347596-73347615 None:intergenic 45.0%
CCGTAAAGCCAACCTTATCA+TGG - chr2_1:73347613-73347632 None:intergenic 45.0%
TTTACGGGATGAAGGGAAGT+GGG + chr2_1:73347626-73347645 Msa0223710:CDS 45.0%
AATATCAGCAGCTGGAGAAG+AGG - chr2_1:73347846-73347865 None:intergenic 45.0%
AGCGGGAAAAATGTGAGTGA+AGG - chr2_1:73347979-73347998 None:intergenic 45.0%
TCGAGTTCATCATGTAGAGC+GGG - chr2_1:73347996-73348015 None:intergenic 45.0%
GGCTGGAAAATTGTGAGTGA+AGG - chr2_1:73348076-73348095 None:intergenic 45.0%
! AAAAGGGTGTGTGGAAAGTG+AGG - chr2_1:73348097-73348116 None:intergenic 45.0%
! GGGATTTTGTTGGATCAGTG+AGG - chr2_1:73348127-73348146 None:intergenic 45.0%
! GGAAGGGAAAGGGATTTTGT+TGG - chr2_1:73348137-73348156 None:intergenic 45.0%
GTGATGCAAATGGAAGGGAA+AGG - chr2_1:73348148-73348167 None:intergenic 45.0%
ACGACGTGATGCAAATGGAA+GGG - chr2_1:73348153-73348172 None:intergenic 45.0%
AACGACGTGATGCAAATGGA+AGG - chr2_1:73348154-73348173 None:intergenic 45.0%
TCCATTTGCATCACGTCGTT+AGG + chr2_1:73348154-73348173 Msa0223710:intron 45.0%
TCCTAACGACGTGATGCAAA+TGG - chr2_1:73348158-73348177 None:intergenic 45.0%
ATGGCAGCATGAGACACATT+GGG - chr2_1:73348198-73348217 None:intergenic 45.0%
! AGGACTAGAGGTAGCTTTTC+AGG - chr2_1:73348311-73348330 None:intergenic 45.0%
CTGCATGTAACCGATTGAGA+TGG - chr2_1:73348394-73348413 None:intergenic 45.0%
TGTCACAGGACGAGAAAGAT+AGG + chr2_1:73348524-73348543 Msa0223710:intron 45.0%
TCCATTGTTGCCAGACATTC+TGG + chr2_1:73348760-73348779 Msa0223710:three_prime_UTR 45.0%
ACCAGAATGTCTGGCAACAA+TGG - chr2_1:73348764-73348783 None:intergenic 45.0%
! GCTTGAAGTTGGTTGTGTAG+TGG + chr2_1:73348842-73348861 Msa0223710:three_prime_UTR 45.0%
CGTTTGTGCAACTGAATGGG+GGG - chr2_1:73345136-73345155 None:intergenic 50.0%
CCGTTTGTGCAACTGAATGG+GGG - chr2_1:73345137-73345156 None:intergenic 50.0%
CCCCCATTCAGTTGCACAAA+CGG + chr2_1:73345134-73345153 Msa0223710:five_prime_UTR 50.0%
TGAGCTAGGGGATAAGGAGT+TGG - chr2_1:73345692-73345711 None:intergenic 50.0%
ACGTAGAAGCTTCGATAGGG+AGG + chr2_1:73346071-73346090 Msa0223710:intron 50.0%
CGTAGAAGCTTCGATAGGGA+GGG + chr2_1:73346072-73346091 Msa0223710:intron 50.0%
CGTGACACGTTGAACCAATG+AGG + chr2_1:73346172-73346191 Msa0223710:intron 50.0%
AGATAGCATGGAGCCCTCAT+TGG - chr2_1:73346189-73346208 None:intergenic 50.0%
TCCCCTAATCAGAGGCTTTG+AGG - chr2_1:73346259-73346278 None:intergenic 50.0%
GTGTTGGATCCCCTAATCAG+AGG - chr2_1:73346267-73346286 None:intergenic 50.0%
GATTAGGGGATCCAACACCT+AGG + chr2_1:73346269-73346288 Msa0223710:intron 50.0%
TTTCTGACAGCTCCGCACTT+AGG + chr2_1:73346602-73346621 Msa0223710:intron 50.0%
!! GGAAAGTGTCTGCCTAAGTG+CGG - chr2_1:73346617-73346636 None:intergenic 50.0%
ATGGATCACCAATCTGGCCA+GGG + chr2_1:73347198-73347217 Msa0223710:CDS 50.0%
GGCCAGGGATTTGATTCAGA+TGG + chr2_1:73347213-73347232 Msa0223710:CDS 50.0%
CATGCAGTTCAACTCAAGGG+AGG + chr2_1:73347386-73347405 Msa0223710:CDS 50.0%
CATGGCTTGACAACCTTCTC+GGG - chr2_1:73347595-73347614 None:intergenic 50.0%
!! AGGTTGGCTTTACGGGATGA+AGG + chr2_1:73347618-73347637 Msa0223710:CDS 50.0%
!! GGTTGGCTTTACGGGATGAA+GGG + chr2_1:73347619-73347638 Msa0223710:CDS 50.0%
CTTTACGGGATGAAGGGAAG+TGG + chr2_1:73347625-73347644 Msa0223710:CDS 50.0%
TGAGTCCCAGTGAAGTTCCA+TGG + chr2_1:73347688-73347707 Msa0223710:CDS 50.0%
CTCACTAACCAAGTGCTTCC+CGG - chr2_1:73347721-73347740 None:intergenic 50.0%
! GGGACTTAGAAAAGGGTGTG+TGG - chr2_1:73348106-73348125 None:intergenic 50.0%
CATGGCAGCATGAGACACAT+TGG - chr2_1:73348199-73348218 None:intergenic 50.0%
GGCCCTCATTCTATCTTAGG+TGG - chr2_1:73348244-73348263 None:intergenic 50.0%
CGGAGTCACTGCACTAACCA+TGG - chr2_1:73345067-73345086 None:intergenic 55.0%
TGGTTAGTGCAGTGACTCCG+AGG + chr2_1:73345067-73345086 Msa0223710:five_prime_UTR 55.0%
GGAGGTCCTCAGCTCAAACT+TGG - chr2_1:73345671-73345690 None:intergenic 55.0%
GCTAGGGGATAAGGAGTTGG+AGG - chr2_1:73345689-73345708 None:intergenic 55.0%
! GAGTCATTGAAAGCGCGGAC+AGG + chr2_1:73345931-73345950 Msa0223710:intron 55.0%
GATGGCACTCACCTAGGTGT+TGG - chr2_1:73346283-73346302 None:intergenic 55.0%
GATGGATCACCAATCTGGCC+AGG + chr2_1:73347197-73347216 Msa0223710:CDS 55.0%
TTACTCGCGAACGGCGGTTA+TGG - chr2_1:73347470-73347489 None:intergenic 55.0%
CCTCGCCATGGAACTTCACT+GGG - chr2_1:73347696-73347715 None:intergenic 55.0%
TCCTCGCCATGGAACTTCAC+TGG - chr2_1:73347697-73347716 None:intergenic 55.0%
GAAGTTCCATGGCGAGGATC+CGG + chr2_1:73347699-73347718 Msa0223710:CDS 55.0%
AAGTTCCATGGCGAGGATCC+GGG + chr2_1:73347700-73347719 Msa0223710:CDS 55.0%
!! CGGGAAGCACTTGGTTAGTG+AGG + chr2_1:73347719-73347738 Msa0223710:CDS 55.0%
TTTAGGGGGTGGAGGACTAG+AGG - chr2_1:73348323-73348342 None:intergenic 55.0%
GCAACTCGAGCGATAGCTCA+CGG - chr2_1:73348555-73348574 None:intergenic 55.0%
! CGCTCGAGTTGCACAACGAA+AGG + chr2_1:73348563-73348582 Msa0223710:CDS 55.0%
TCAACCTGCTCCACCGCTAG+CGG + chr2_1:73346316-73346335 Msa0223710:intron 60.0%
TGCTCCACCGCTAGCGGAAT+CGG + chr2_1:73346322-73346341 Msa0223710:intron 60.0%
CTATCCGATTCCGCTAGCGG+TGG - chr2_1:73346329-73346348 None:intergenic 60.0%
TTCTGACCACGCGAATGGGG+TGG + chr2_1:73346422-73346441 Msa0223710:intron 60.0%
!! GGGGTGGACTGTGGAGTATG+TGG + chr2_1:73346438-73346457 Msa0223710:intron 60.0%
TGACAACCTTCTCGGGTGGC+TGG - chr2_1:73347588-73347607 None:intergenic 60.0%
GGCTTGACAACCTTCTCGGG+TGG - chr2_1:73347592-73347611 None:intergenic 60.0%
CCCAGTGAAGTTCCATGGCG+AGG + chr2_1:73347693-73347712 Msa0223710:CDS 60.0%
GGGTGTGTGGAAAGTGAGGC+TGG - chr2_1:73348093-73348112 None:intergenic 60.0%
GATTCCGCTAGCGGTGGAGC+AGG - chr2_1:73346323-73346342 None:intergenic 65.0%
CACAGTCCACCCCATTCGCG+TGG - chr2_1:73346431-73346450 None:intergenic 65.0%
!! CACGCGAATGGGGTGGACTG+TGG + chr2_1:73346429-73346448 Msa0223710:intron 65.0%
CAACCTTCTCGGGTGGCTGG+TGG - chr2_1:73347585-73347604 None:intergenic 65.0%
TGCTTCCCGGATCCTCGCCA+TGG - chr2_1:73347708-73347727 None:intergenic 65.0%
!! GCGAGGATCCGGGAAGCACT+TGG + chr2_1:73347710-73347729 Msa0223710:CDS 65.0%
CTCGGGTGGCTGGTGGAGGA+GGG - chr2_1:73347578-73347597 None:intergenic 70.0%
TCTCGGGTGGCTGGTGGAGG+AGG - chr2_1:73347579-73347598 None:intergenic 70.0%
CCTTCTCGGGTGGCTGGTGG+AGG - chr2_1:73347582-73347601 None:intergenic 70.0%
CCTCCACCAGCCACCCGAGA+AGG + chr2_1:73347579-73347598 Msa0223710:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 73345018 73349066 73345018 ID=Msa0223710;Name=Msa0223710
chr2_1 mRNA 73345018 73349066 73345018 ID=Msa0223710-mRNA-1;Parent=Msa0223710;Name=Msa0223710-mRNA-1;_AED=0.01;_eAED=0.01;_QI=238|1|1|1|0.33|0.25|4|322|252
chr2_1 exon 73345018 73345188 73345018 ID=Msa0223710-mRNA-1:exon:21457;Parent=Msa0223710-mRNA-1
chr2_1 exon 73345358 73345423 73345358 ID=Msa0223710-mRNA-1:exon:21458;Parent=Msa0223710-mRNA-1
chr2_1 exon 73347194 73347740 73347194 ID=Msa0223710-mRNA-1:exon:21459;Parent=Msa0223710-mRNA-1
chr2_1 exon 73348532 73349066 73348532 ID=Msa0223710-mRNA-1:exon:21460;Parent=Msa0223710-mRNA-1
chr2_1 five_prime_UTR 73345018 73345188 73345018 ID=Msa0223710-mRNA-1:five_prime_utr;Parent=Msa0223710-mRNA-1
chr2_1 five_prime_UTR 73345358 73345423 73345358 ID=Msa0223710-mRNA-1:five_prime_utr;Parent=Msa0223710-mRNA-1
chr2_1 five_prime_UTR 73347194 73347194 73347194 ID=Msa0223710-mRNA-1:five_prime_utr;Parent=Msa0223710-mRNA-1
chr2_1 CDS 73347195 73347740 73347195 ID=Msa0223710-mRNA-1:cds;Parent=Msa0223710-mRNA-1
chr2_1 CDS 73348532 73348744 73348532 ID=Msa0223710-mRNA-1:cds;Parent=Msa0223710-mRNA-1
chr2_1 three_prime_UTR 73348745 73349066 73348745 ID=Msa0223710-mRNA-1:three_prime_utr;Parent=Msa0223710-mRNA-1
Gene Sequence

>Msa0223710

ATGATGGATCACCAATCTGGCCAGGGATTTGATTCAGATGGTAGTGACTTTGATGTGCTAGCAGAAATCAGTGAGAAACATGAGAAAGTAGAAGATGAGTTTACAAACAATTTAGAATTATGTACAGGCGAAGATGAAAAGTTTGTCGAACAACCTGTAGCAGATTCGGACACATTAGAACCATTCATAGGCATGCAGTTCAACTCAAGGGAGGAAGCAAGAGAATTCTACAATGGCTATGGTAGGAGGATAGGATTTACAGTACGGATACACCATAACCGCCGTTCGCGAGTAAATAACAAGCTAATTGGTCAAGATTTTGTCTGCTCAAAAGAAGGTTTTCGTGCAAAAAAGTATGTGCACAGAAAAGATAGAGTGCTCCCTCCTCCACCAGCCACCCGAGAAGGTTGTCAAGCCATGATAAGGTTGGCTTTACGGGATGAAGGGAAGTGGGTTGTCACCAAATTTGTGAAGGAACATACACATAAACTGATGAGTCCCAGTGAAGTTCCATGGCGAGGATCCGGGAAGCACTTGGTTAGTGAGGACGAGAAAGATAGGAGAATCCGTGAGCTATCGCTCGAGTTGCACAACGAAAGGCAAAAGTACAAAAGGCGTTGTGCAGCATATGAAGAACAGTTAAATACAATTCTGAACGATTTGGAAAAGCACACAGAACATATCTCTAAAAAAGTTGCTGATGTAGTCCGAAATATCAGAGAGATTGAGGAAGAAAAATCAGATTTAGATGGCAGGTAA
Protein sequence

>Msa0223710

MMDHQSGQGFDSDGSDFDVLAEISEKHEKVEDEFTNNLELCTGEDEKFVEQPVADSDTLEPFIGMQFNSREEAREFYNGYGRRIGFTVRIHHNRRSRVNNKLIGQDFVCSKEGFRAKKYVHRKDRVLPPPPATREGCQAMIRLALRDEGKWVVTKFVKEHTHKLMSPSEVPWRGSGKHLVSEDEKDRRIRELSLELHNERQKYKRRCAAYEEQLNTILNDLEKHTEHISKKVADVVRNIREIEEEKSDLDGR*