Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223810 | XP_003597529.1 | 98.140 | 430 | 7 | 1 | 1 | 430 | 1 | 429 | 0.0 | 861 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223810 | sp|Q04088|POF21_ARATH | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.29e-150 | 435 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223810 | G7IHV8 | 98.140 | 430 | 7 | 1 | 1 | 430 | 1 | 429 | 0.0 | 861 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0223810 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223810 | MtrunA17_Chr2g0329551 | 98.140 | 430 | 7 | 1 | 1 | 430 | 1 | 429 | 0.0 | 861 |
| Msa0223810 | MtrunA17_Chr3g0107491 | 52.874 | 261 | 93 | 7 | 72 | 322 | 38 | 278 | 4.65e-66 | 216 |
| Msa0223810 | MtrunA17_Chr5g0432701 | 52.549 | 255 | 68 | 9 | 72 | 320 | 51 | 258 | 9.00e-65 | 211 |
| Msa0223810 | MtrunA17_Chr3g0128781 | 43.796 | 274 | 80 | 8 | 72 | 335 | 7 | 216 | 5.57e-51 | 174 |
| Msa0223810 | MtrunA17_Chr6g0463571 | 42.532 | 308 | 122 | 12 | 66 | 366 | 22 | 281 | 8.62e-48 | 166 |
| Msa0223810 | MtrunA17_Chr4g0036071 | 40.328 | 305 | 104 | 10 | 109 | 364 | 213 | 488 | 3.98e-44 | 160 |
| Msa0223810 | MtrunA17_Chr1g0156051 | 59.712 | 139 | 53 | 2 | 176 | 313 | 343 | 479 | 2.47e-32 | 129 |
| Msa0223810 | MtrunA17_Chr2g0316551 | 37.821 | 156 | 82 | 2 | 219 | 374 | 206 | 346 | 2.01e-20 | 92.0 |
| Msa0223810 | MtrunA17_Chr2g0325131 | 45.614 | 114 | 57 | 2 | 219 | 327 | 189 | 302 | 1.40e-19 | 89.4 |
| Msa0223810 | MtrunA17_Chr4g0040891 | 46.000 | 100 | 54 | 0 | 219 | 318 | 192 | 291 | 7.93e-19 | 87.0 |
| Msa0223810 | MtrunA17_Chr1g0202051 | 36.697 | 109 | 69 | 0 | 206 | 314 | 109 | 217 | 2.57e-13 | 70.1 |
| Msa0223810 | MtrunA17_Chr2g0306581 | 63.265 | 49 | 18 | 0 | 209 | 257 | 1 | 49 | 3.13e-12 | 63.5 |
| Msa0223810 | MtrunA17_Chr8g0380611 | 27.341 | 267 | 158 | 6 | 58 | 313 | 80 | 321 | 3.37e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223810 | AT1G06070.1 | 73.810 | 336 | 69 | 6 | 19 | 352 | 21 | 339 | 4.27e-168 | 478 |
| Msa0223810 | AT2G31370.5 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 1.33e-151 | 435 |
| Msa0223810 | AT2G31370.2 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.33e-151 | 435 |
| Msa0223810 | AT2G31370.4 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.33e-151 | 435 |
| Msa0223810 | AT2G31370.1 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.33e-151 | 435 |
| Msa0223810 | AT2G31370.7 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.33e-151 | 435 |
| Msa0223810 | AT2G31370.3 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.33e-151 | 435 |
| Msa0223810 | AT2G31370.6 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.33e-151 | 435 |
| Msa0223810 | AT2G40620.1 | 49.231 | 260 | 95 | 7 | 66 | 324 | 28 | 251 | 2.28e-61 | 203 |
| Msa0223810 | AT1G43700.1 | 49.746 | 197 | 90 | 3 | 161 | 348 | 129 | 325 | 2.58e-49 | 171 |
| Msa0223810 | AT1G06850.1 | 52.459 | 183 | 61 | 2 | 204 | 360 | 131 | 313 | 3.77e-48 | 168 |
| Msa0223810 | AT4G38900.2 | 42.642 | 265 | 98 | 6 | 109 | 319 | 228 | 492 | 8.08e-46 | 166 |
| Msa0223810 | AT4G38900.3 | 42.642 | 265 | 98 | 6 | 109 | 319 | 228 | 492 | 8.08e-46 | 166 |
| Msa0223810 | AT4G38900.1 | 41.697 | 271 | 98 | 7 | 109 | 319 | 228 | 498 | 2.51e-43 | 160 |
| Msa0223810 | AT2G21230.4 | 63.415 | 123 | 45 | 0 | 196 | 318 | 345 | 467 | 1.36e-42 | 157 |
| Msa0223810 | AT2G21230.1 | 63.415 | 123 | 45 | 0 | 196 | 318 | 345 | 467 | 1.36e-42 | 157 |
| Msa0223810 | AT2G21230.3 | 59.690 | 129 | 46 | 1 | 196 | 318 | 345 | 473 | 1.20e-39 | 149 |
| Msa0223810 | AT2G21230.2 | 65.421 | 107 | 37 | 0 | 196 | 302 | 345 | 451 | 6.08e-37 | 140 |
| Msa0223810 | AT1G06850.2 | 76.712 | 73 | 17 | 0 | 204 | 276 | 131 | 203 | 8.06e-27 | 107 |
| Msa0223810 | AT2G42380.2 | 47.000 | 100 | 53 | 0 | 219 | 318 | 184 | 283 | 5.77e-20 | 90.5 |
| Msa0223810 | AT3G58120.1 | 47.959 | 98 | 51 | 0 | 221 | 318 | 202 | 299 | 9.37e-20 | 90.1 |
| Msa0223810 | AT2G12900.1 | 34.109 | 129 | 77 | 1 | 196 | 316 | 83 | 211 | 1.30e-18 | 85.9 |
| Msa0223810 | AT2G42380.5 | 47.619 | 84 | 44 | 0 | 219 | 302 | 184 | 267 | 3.30e-17 | 81.6 |
| Msa0223810 | AT3G58120.2 | 49.367 | 79 | 40 | 0 | 221 | 299 | 202 | 280 | 4.84e-16 | 78.6 |
| Msa0223810 | AT2G13150.1 | 37.615 | 109 | 67 | 1 | 207 | 315 | 136 | 243 | 6.08e-16 | 77.8 |
| Msa0223810 | AT2G12940.1 | 34.188 | 117 | 76 | 1 | 197 | 313 | 125 | 240 | 2.94e-15 | 76.6 |
| Msa0223810 | AT2G42380.1 | 42.000 | 100 | 47 | 1 | 219 | 318 | 184 | 272 | 1.20e-13 | 72.0 |
| Msa0223810 | AT2G21235.1 | 43.678 | 87 | 49 | 0 | 221 | 307 | 359 | 445 | 3.32e-13 | 72.0 |
| Msa0223810 | AT1G58110.1 | 41.860 | 86 | 50 | 0 | 230 | 315 | 238 | 323 | 1.14e-11 | 66.6 |
| Msa0223810 | AT1G58110.2 | 41.860 | 86 | 50 | 0 | 230 | 315 | 238 | 323 | 1.14e-11 | 66.6 |
| Msa0223810 | AT2G42380.3 | 60.000 | 45 | 18 | 0 | 219 | 263 | 184 | 228 | 7.22e-11 | 62.4 |
| Msa0223810 | AT2G42380.4 | 60.000 | 45 | 18 | 0 | 219 | 263 | 184 | 228 | 7.22e-11 | 62.4 |
Find 144 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGTGCTGGTGTCTGATTC+TGG | 0.098268 | 2_1:+73468345 | None:intergenic |
| TTCCCTTTCTCTCTATTTCT+AGG | 0.189628 | 2_1:-73469184 | Msa0223810:five_prime_UTR |
| CCTATGAACTTTAATTCTTT+TGG | 0.197858 | 2_1:-73465993 | Msa0223810:CDS |
| GTGATTGCTTAGTGTTGTTT+AGG | 0.228415 | 2_1:-73468897 | Msa0223810:five_prime_UTR |
| TTCTTGGCACCTCAGTTAAT+TGG | 0.229412 | 2_1:-73465513 | Msa0223810:three_prime_UTR |
| TGAAGTGATTGAACTGGATT+AGG | 0.244656 | 2_1:-73468924 | Msa0223810:five_prime_UTR |
| AATGGAAAAGGACAAATCTT+TGG | 0.246115 | 2_1:-73468860 | Msa0223810:CDS |
| ATCTGATGAAGGATTATCTT+TGG | 0.251730 | 2_1:+73465728 | None:intergenic |
| CCATGCCATGCACACTCTTT+TGG | 0.268695 | 2_1:-73465940 | Msa0223810:CDS |
| GTGCATGGCATGGTTATTAT+TGG | 0.277488 | 2_1:+73465950 | None:intergenic |
| TGTATAATACTAAAATTTCT+TGG | 0.284037 | 2_1:-73465529 | Msa0223810:three_prime_UTR |
| CTAGAATCTGAGCTGGTTCC+AGG | 0.284646 | 2_1:+73468724 | None:intergenic |
| TTCCGAGATTCTTACCTTGC+CGG | 0.302193 | 2_1:-73468632 | Msa0223810:CDS |
| ACCTTTGCGCCGCGTAGATC+AGG | 0.306683 | 2_1:+73469132 | None:intergenic |
| ACCTCCATCAGGACGTTATC+CGG | 0.323576 | 2_1:-73468818 | Msa0223810:CDS |
| TGATTGCTTAGTGTTGTTTA+GGG | 0.334346 | 2_1:-73468896 | Msa0223810:five_prime_UTR |
| TCTGATGAAGGATTATCTTT+GGG | 0.340833 | 2_1:+73465729 | None:intergenic |
| CTGTGCTGGTGTCTGATTCT+GGG | 0.348924 | 2_1:+73468346 | None:intergenic |
| GAAGTGATTGAACTGGATTA+GGG | 0.360372 | 2_1:-73468923 | Msa0223810:five_prime_UTR |
| TGCGCAGTTAACTCTCTTAC+AGG | 0.360430 | 2_1:-73466713 | Msa0223810:intron |
| ATGTCGGTAGGGCAGACATC+AGG | 0.368301 | 2_1:-73468421 | Msa0223810:CDS |
| TTTGTTGCTGCTGTATTTGT+TGG | 0.370991 | 2_1:+73465838 | None:intergenic |
| GTTGTCCATGTACCTTGATA+TGG | 0.382193 | 2_1:-73468527 | Msa0223810:CDS |
| CGCAGTTTCTCAACAATCCT+TGG | 0.383849 | 2_1:+73465689 | None:intergenic |
| TCGTATCCGCCGCTTGCTCC+TGG | 0.385842 | 2_1:-73468742 | Msa0223810:CDS |
| AAACAATAGTACCAACTGTA+TGG | 0.395953 | 2_1:-73469315 | None:intergenic |
| CGGAATGAAGAGAGAGAAAG+TGG | 0.396602 | 2_1:+73469216 | None:intergenic |
| TCCCTTTCTCTCTATTTCTA+GGG | 0.403424 | 2_1:-73469183 | Msa0223810:five_prime_UTR |
| ATGGAAAAGGACAAATCTTT+GGG | 0.406082 | 2_1:-73468859 | Msa0223810:CDS |
| TCTAATGCTGCCGGAGCATC+AGG | 0.411149 | 2_1:-73468454 | Msa0223810:CDS |
| TGCTGCCGGAGCATCAGGTT+TGG | 0.412727 | 2_1:-73468449 | Msa0223810:CDS |
| AAGGACAAATCTTTGGGTCT+TGG | 0.416966 | 2_1:-73468853 | Msa0223810:CDS |
| GGAGCAACAAGTTCACTTGC+AGG | 0.420631 | 2_1:-73466508 | Msa0223810:CDS |
| CATCCATGGATTGGCTGTGC+TGG | 0.426609 | 2_1:+73468332 | None:intergenic |
| TTGACCCCAAGCGTGCAAAA+AGG | 0.430308 | 2_1:-73468201 | Msa0223810:intron |
| AACCCTAGAAATAGAGAGAA+AGG | 0.437708 | 2_1:+73469181 | None:intergenic |
| TGCACGCTTGGGGTCAATCA+AGG | 0.439782 | 2_1:+73468207 | None:intergenic |
| GTTTGATTCGTTGACGAGAA+TGG | 0.440805 | 2_1:-73469292 | Msa0223810:five_prime_UTR |
| GAGAAAGGGAAAATGAATAT+CGG | 0.443981 | 2_1:+73469196 | None:intergenic |
| TTTAAATGACGCGTTAAAAG+AGG | 0.453730 | 2_1:-73466069 | Msa0223810:CDS |
| CTTAGTGTTGTTTAGGGTCA+AGG | 0.453918 | 2_1:-73468890 | Msa0223810:five_prime_UTR |
| TATCCGGGTTATTCACCAAC+TGG | 0.455335 | 2_1:-73468802 | Msa0223810:CDS |
| GTAACAGGATATGGGCAAAT+AGG | 0.455791 | 2_1:-73466831 | Msa0223810:intron |
| GCACCTCAGTTAATTGGCTA+TGG | 0.456886 | 2_1:-73465507 | Msa0223810:three_prime_UTR |
| CAAGTGAACTTGTTGCTCCA+TGG | 0.458049 | 2_1:+73466512 | None:intergenic |
| TGCATGGCATGGTTATTATT+GGG | 0.461227 | 2_1:+73465951 | None:intergenic |
| ATTTGTGTGTAACAGGATAT+GGG | 0.465089 | 2_1:-73466839 | Msa0223810:intron |
| GTTTACTTTGTTGATTGAGA+TGG | 0.465856 | 2_1:-73465440 | Msa0223810:three_prime_UTR |
| AAATCTTTGGGTCTTGGCGG+TGG | 0.466838 | 2_1:-73468847 | Msa0223810:CDS |
| GTAGATCAGGGGAGATAGAT+TGG | 0.469223 | 2_1:+73469145 | None:intergenic |
| GACAAATCTTTGGGTCTTGG+CGG | 0.471518 | 2_1:-73468850 | Msa0223810:CDS |
| TGGCGCCAAACCTGATGCTC+CGG | 0.476829 | 2_1:+73468444 | None:intergenic |
| TTCATCAGATGTAAATCCTT+CGG | 0.478143 | 2_1:-73465715 | Msa0223810:CDS |
| AAGTTCATAGGTCCTCCATT+TGG | 0.480765 | 2_1:+73466005 | None:intergenic |
| CCAAAAGAATTAAAGTTCAT+AGG | 0.483391 | 2_1:+73465993 | None:intergenic |
| CGTCTATGACCTCTATTTCT+CGG | 0.485976 | 2_1:+73468661 | None:intergenic |
| GGCTATGGATATATCAATGT+AGG | 0.488958 | 2_1:-73465492 | Msa0223810:three_prime_UTR |
| CCTTTGCGCCGCGTAGATCA+GGG | 0.489306 | 2_1:+73469133 | None:intergenic |
| GCGGCGGATACGACGATGAT+GGG | 0.489367 | 2_1:+73468752 | None:intergenic |
| GGTTATTCACCAACTGGAAG+TGG | 0.489501 | 2_1:-73468796 | Msa0223810:CDS |
| ACAACAAATGCAGCAGCAGC+AGG | 0.491300 | 2_1:-73465808 | Msa0223810:CDS |
| GGGCAAGCTATGCCGCCAAA+TGG | 0.498892 | 2_1:-73466020 | Msa0223810:CDS |
| GGTGTAGTTGGTGGTGCTGA+TGG | 0.502800 | 2_1:-73468583 | Msa0223810:CDS |
| GAAGGATTTACATCTGATGA+AGG | 0.504672 | 2_1:+73465717 | None:intergenic |
| CGCATTTGAAAGTACTGACT+GGG | 0.505823 | 2_1:-73466040 | Msa0223810:CDS |
| GATAGTGACCTCGGTGTAGT+TGG | 0.507851 | 2_1:-73468595 | Msa0223810:CDS |
| AGCGGCGGATACGACGATGA+TGG | 0.508995 | 2_1:+73468751 | None:intergenic |
| TTCATAGGTCCTCCATTTGG+CGG | 0.509377 | 2_1:+73466008 | None:intergenic |
| CAACAATCCTTGGCTGCCGA+AGG | 0.516507 | 2_1:+73465699 | None:intergenic |
| CTATCAAAGCTAATATCATC+CGG | 0.517208 | 2_1:+73468613 | None:intergenic |
| GATTGTTGTTGACCCATCCA+TGG | 0.517655 | 2_1:+73468318 | None:intergenic |
| TGTCGGTAGGGCAGACATCA+GGG | 0.518633 | 2_1:-73468420 | Msa0223810:CDS |
| CTTATCCATATCAAGGTACA+TGG | 0.520173 | 2_1:+73468522 | None:intergenic |
| GCTATATTGCTGAGCTTGAA+AGG | 0.525278 | 2_1:-73466774 | Msa0223810:CDS |
| GATGTCTGCCCTACCGACAT+TGG | 0.526587 | 2_1:+73468424 | None:intergenic |
| CCTCCATCAGGACGTTATCC+GGG | 0.528655 | 2_1:-73468817 | Msa0223810:CDS |
| TTGTTGACCCATCCATGGAT+TGG | 0.532881 | 2_1:+73468323 | None:intergenic |
| CAGCACAGCCAATCCATGGA+TGG | 0.535460 | 2_1:-73468331 | Msa0223810:CDS |
| ATCCGGCAAGGTAAGAATCT+CGG | 0.540794 | 2_1:+73468630 | None:intergenic |
| CTGCGGCAAGGTCAAAAGAA+AGG | 0.542300 | 2_1:-73466804 | Msa0223810:CDS |
| CATGGACAACAAATCTTCCT+CGG | 0.543636 | 2_1:+73468540 | None:intergenic |
| CCCTGATCTACGCGGCGCAA+AGG | 0.544257 | 2_1:-73469133 | Msa0223810:intron |
| GAAGGATTATCTTTGGGGCA+TGG | 0.547961 | 2_1:+73465735 | None:intergenic |
| AATTGAACTTATCCATATCA+AGG | 0.549561 | 2_1:+73468515 | None:intergenic |
| TTGTCTCGGTGTCCTAGTGT+TGG | 0.550015 | 2_1:-73465639 | Msa0223810:three_prime_UTR |
| ACCCTAGAAATAGAGAGAAA+GGG | 0.550518 | 2_1:+73469182 | None:intergenic |
| TGTAAATCCTTCGGCAGCCA+AGG | 0.553319 | 2_1:-73465706 | Msa0223810:CDS |
| CAAACCTGAGATGTTAGTCT+CGG | 0.554735 | 2_1:-73468296 | Msa0223810:CDS |
| ACGCATTTGAAAGTACTGAC+TGG | 0.558522 | 2_1:-73466041 | Msa0223810:CDS |
| TACCTCTTCTGGGGAAAACA+TGG | 0.559014 | 2_1:-73468392 | Msa0223810:CDS |
| ACACCAGCACAGCCAATCCA+TGG | 0.562387 | 2_1:-73468335 | Msa0223810:CDS |
| GGTGAGGGGTCTAATGCTGC+CGG | 0.563134 | 2_1:-73468463 | Msa0223810:CDS |
| GCTATGGATATATCAATGTA+GGG | 0.565991 | 2_1:-73465491 | Msa0223810:three_prime_UTR |
| GAAAGTGCAGACATTGCAAA+CGG | 0.566063 | 2_1:-73466752 | Msa0223810:CDS |
| AACAATAGTACCAACTGTAT+GGG | 0.567890 | 2_1:-73469314 | None:intergenic |
| GGTTTGGCGCCAATGTCGGT+AGG | 0.568378 | 2_1:-73468433 | Msa0223810:CDS |
| GATAATCCTCCGAGAAATAG+AGG | 0.571302 | 2_1:-73468670 | Msa0223810:CDS |
| ATCAGGTTTGGCGCCAATGT+CGG | 0.572303 | 2_1:-73468437 | Msa0223810:CDS |
| TGATGTTGCTGCTGTTTCTG+AGG | 0.574585 | 2_1:+73465885 | None:intergenic |
| CAAGCTATGCCGCCAAATGG+AGG | 0.574883 | 2_1:-73466017 | Msa0223810:CDS |
| CTGATGAAGGATTATCTTTG+GGG | 0.574967 | 2_1:+73465730 | None:intergenic |
| AAACCTGAGATGTTAGTCTC+GGG | 0.579212 | 2_1:-73468295 | Msa0223810:CDS |
| GAACCCGAGACTAACATCTC+AGG | 0.581152 | 2_1:+73468292 | None:intergenic |
| CGGCGGATACGACGATGATG+GGG | 0.587072 | 2_1:+73468753 | None:intergenic |
| TCTGGGGAAAACATGGCAGT+TGG | 0.589649 | 2_1:-73468385 | Msa0223810:CDS |
| AAAGCCACTAGAATCTGAGC+TGG | 0.591242 | 2_1:+73468717 | None:intergenic |
| CTCGGTGTCCTAGTGTTGGT+AGG | 0.592023 | 2_1:-73465635 | Msa0223810:three_prime_UTR |
| CCAAAAGAGTGTGCATGGCA+TGG | 0.592655 | 2_1:+73465940 | None:intergenic |
| CTTCCAGTTGGTGAATAACC+CGG | 0.596092 | 2_1:+73468799 | None:intergenic |
| AGCACAGCCAATCCATGGAT+GGG | 0.597943 | 2_1:-73468330 | Msa0223810:CDS |
| TCGGTAGGGCAGACATCAGG+GGG | 0.598437 | 2_1:-73468418 | Msa0223810:CDS |
| GGATAACGTCCTGATGGAGG+TGG | 0.599011 | 2_1:+73468820 | None:intergenic |
| ATTAGCTTTGATAGTGACCT+CGG | 0.599687 | 2_1:-73468604 | Msa0223810:CDS |
| GTTTGGCGCCAATGTCGGTA+GGG | 0.605892 | 2_1:-73468432 | Msa0223810:CDS |
| ACATTGAAACCACTTCCAGT+TGG | 0.606876 | 2_1:+73468787 | None:intergenic |
| TGCAGCCAAAAGAGTGTGCA+TGG | 0.611169 | 2_1:+73465935 | None:intergenic |
| AGTGACCTCGGTGTAGTTGG+TGG | 0.612819 | 2_1:-73468592 | Msa0223810:CDS |
| ACGAATCAAACCCATACAGT+TGG | 0.616810 | 2_1:+73469304 | None:intergenic |
| TTCCTCGGTATCATCAGAGA+AGG | 0.617359 | 2_1:+73468555 | None:intergenic |
| GAGCTGGTTCCAGGAGCAAG+CGG | 0.619940 | 2_1:+73468733 | None:intergenic |
| GAAGCTGCGGTTGCAAACCA+TGG | 0.620439 | 2_1:-73466529 | Msa0223810:CDS |
| CAACAAGTTCACTTGCAGGA+TGG | 0.622286 | 2_1:-73466504 | Msa0223810:intron |
| TAACCCGGATAACGTCCTGA+TGG | 0.622648 | 2_1:+73468814 | None:intergenic |
| GTCGGTAGGGCAGACATCAG+GGG | 0.622956 | 2_1:-73468419 | Msa0223810:CDS |
| CTGGTTCCAGGAGCAAGCGG+CGG | 0.624878 | 2_1:+73468736 | None:intergenic |
| AAAGCTAATATCATCCGGCA+AGG | 0.625947 | 2_1:+73468618 | None:intergenic |
| CAAATAGGCAGTCTGCGGCA+AGG | 0.630192 | 2_1:-73466816 | Msa0223810:CDS |
| CCCGGATAACGTCCTGATGG+AGG | 0.636399 | 2_1:+73468817 | None:intergenic |
| GGCTGCAACCTACCAACACT+AGG | 0.637292 | 2_1:+73465627 | None:intergenic |
| CTTTGCGCCGCGTAGATCAG+GGG | 0.647338 | 2_1:+73469134 | None:intergenic |
| TATGAACAGAGAGATACAAG+TGG | 0.648861 | 2_1:-73466576 | Msa0223810:intron |
| GGAACCAGCTCAGATTCTAG+TGG | 0.650014 | 2_1:-73468721 | Msa0223810:CDS |
| GGATTATCTTTGGGGCATGG+AGG | 0.651440 | 2_1:+73465738 | None:intergenic |
| CAGTTGGTACTACAAATGAA+AGG | 0.663413 | 2_1:-73468369 | Msa0223810:CDS |
| AAGTGATTGAACTGGATTAG+GGG | 0.672133 | 2_1:-73468922 | Msa0223810:five_prime_UTR |
| CTATGACCTCTATTTCTCGG+AGG | 0.675680 | 2_1:+73468664 | None:intergenic |
| GTCCTTCTCTGATGATACCG+AGG | 0.677458 | 2_1:-73468557 | Msa0223810:CDS |
| TCGGTATCATCAGAGAAGGA+CGG | 0.681781 | 2_1:+73468559 | None:intergenic |
| ATGGGCAAATAGGCAGTCTG+CGG | 0.682103 | 2_1:-73466821 | Msa0223810:CDS |
| AGAACAGTGAGCTGAAGCTG+CGG | 0.689015 | 2_1:-73466542 | Msa0223810:CDS |
| GGCGGATACGACGATGATGG+GGG | 0.706397 | 2_1:+73468754 | None:intergenic |
| TATCCATAGCCAATTAACTG+AGG | 0.712792 | 2_1:+73465504 | None:intergenic |
| TCTATCTCCCCTGATCTACG+CGG | 0.750401 | 2_1:-73469141 | Msa0223810:five_prime_UTR |
| CAGCACCACCAACTACACCG+AGG | 0.826194 | 2_1:+73468587 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATTAATTTGTTACT+AGG | - | chr2_1:73465788-73465807 | Msa0223810:CDS | 10.0% |
| !!! | TTTTTATTAATTTGTTACTA+GGG | - | chr2_1:73465789-73465808 | Msa0223810:CDS | 10.0% |
| !! | AAAAAACAAAAGAGAAAAAT+TGG | + | chr2_1:73465706-73465725 | None:intergenic | 15.0% |
| !! | AAAATAACTAAGAAACATTA+TGG | + | chr2_1:73466592-73466611 | None:intergenic | 15.0% |
| !! | ACAGAATAATATATAACATT+TGG | + | chr2_1:73466664-73466683 | None:intergenic | 15.0% |
| !!! | AAAATTGTAAGATTTTTCTA+AGG | - | chr2_1:73467240-73467259 | Msa0223810:intron | 15.0% |
| !!! | TTTTTTTTCTATCTCTTTTT+TGG | - | chr2_1:73467835-73467854 | Msa0223810:intron | 15.0% |
| !!! | AGGACTATATTAATATTTTT+TGG | - | chr2_1:73468135-73468154 | Msa0223810:intron | 15.0% |
| !! | AGTATTTATTTAATGCAATA+TGG | - | chr2_1:73468349-73468368 | Msa0223810:CDS | 15.0% |
| !! | GACAAATATATTAATCTATT+GGG | + | chr2_1:73468431-73468450 | None:intergenic | 15.0% |
| !! | AGACAAATATATTAATCTAT+TGG | + | chr2_1:73468432-73468451 | None:intergenic | 15.0% |
| !! | TAGATTAATATATTTGTCTT+AGG | - | chr2_1:73468433-73468452 | Msa0223810:CDS | 15.0% |
| !! | TAAGAATAAAAAATAGAACA+AGG | + | chr2_1:73469136-73469155 | None:intergenic | 15.0% |
| !! | TGTATAATACTAAAATTTCT+TGG | - | chr2_1:73469210-73469229 | Msa0223810:five_prime_UTR | 15.0% |
| !! | TAATCTAGCATTCATAAATT+AGG | - | chr2_1:73466697-73466716 | Msa0223810:intron | 20.0% |
| !! | TTGTGTTTATTAATTTCAAC+AGG | + | chr2_1:73467116-73467135 | None:intergenic | 20.0% |
| !! | TGAAATTAATAAACACAACA+AGG | - | chr2_1:73467118-73467137 | Msa0223810:intron | 20.0% |
| !!! | AAAAAAGTATAGTGTTATTG+TGG | + | chr2_1:73467160-73467179 | None:intergenic | 20.0% |
| !!! | AACACTATACTTTTTTTTTG+TGG | - | chr2_1:73467164-73467183 | Msa0223810:intron | 20.0% |
| !!! | TTACTTTCTAAAACTGTTTT+TGG | - | chr2_1:73467578-73467597 | Msa0223810:intron | 20.0% |
| !!! | TACTTTCTAAAACTGTTTTT+GGG | - | chr2_1:73467579-73467598 | Msa0223810:intron | 20.0% |
| !! | AATGAGCTAGTTTAAGAAAT+TGG | - | chr2_1:73465734-73465753 | Msa0223810:CDS | 25.0% |
| !! | ATGAGCTAGTTTAAGAAATT+GGG | - | chr2_1:73465735-73465754 | Msa0223810:CDS | 25.0% |
| ! | AATTGAACTTATCCATATCA+AGG | + | chr2_1:73466227-73466246 | None:intergenic | 25.0% |
| ! | AGAAACATTATGGTACAAAA+TGG | + | chr2_1:73466582-73466601 | None:intergenic | 25.0% |
| !! | TTTCTCTTTCACTATCTTTT+CGG | - | chr2_1:73466871-73466890 | Msa0223810:intron | 25.0% |
| ! | ATGAGAAAAAATCTCAGAAA+TGG | - | chr2_1:73467042-73467061 | Msa0223810:intron | 25.0% |
| ! | GTTTATTAATTTCAACAGGA+AGG | + | chr2_1:73467112-73467131 | None:intergenic | 25.0% |
| !! | ATACGAAATATTGTAGGTTT+TGG | - | chr2_1:73467188-73467207 | Msa0223810:intron | 25.0% |
| !!! | GTTGCGTTTTATTTATTTGA+AGG | - | chr2_1:73467474-73467493 | Msa0223810:intron | 25.0% |
| ! | TTCAAATACTACCAAAACAA+TGG | + | chr2_1:73467552-73467571 | None:intergenic | 25.0% |
| ! | TTCCAAAAAATCCCATTATT+GGG | - | chr2_1:73467612-73467631 | Msa0223810:intron | 25.0% |
| ! | TGCAATAGATAAAGCAAAAT+AGG | + | chr2_1:73467778-73467797 | None:intergenic | 25.0% |
| !!! | TTTCTATCTCTTTTTTGGTT+TGG | - | chr2_1:73467840-73467859 | Msa0223810:intron | 25.0% |
| !!! | TTCTATCTCTTTTTTGGTTT+GGG | - | chr2_1:73467841-73467860 | Msa0223810:intron | 25.0% |
| ! | AGGAAACATTTATAATGTTG+TGG | + | chr2_1:73468266-73468285 | None:intergenic | 25.0% |
| ! | TATCCTTGCAATTTACAATA+TGG | - | chr2_1:73468383-73468402 | Msa0223810:CDS | 25.0% |
| ! | ATACCATATTGTAAATTGCA+AGG | + | chr2_1:73468389-73468408 | None:intergenic | 25.0% |
| ! | AATATATTTGTCTTAGGTGA+AGG | - | chr2_1:73468439-73468458 | Msa0223810:CDS | 25.0% |
| ! | CCAAAAGAATTAAAGTTCAT+AGG | + | chr2_1:73468749-73468768 | None:intergenic | 25.0% |
| !! | CCTATGAACTTTAATTCTTT+TGG | - | chr2_1:73468746-73468765 | Msa0223810:CDS | 25.0% |
| !! | ATGAACTTTAATTCTTTTGG+AGG | - | chr2_1:73468749-73468768 | Msa0223810:CDS | 25.0% |
| !! | CTTTTTAGATTTCATTGTCT+CGG | - | chr2_1:73469086-73469105 | Msa0223810:intron | 25.0% |
| !! | GATTTTGTCAAAACTACAAT+AGG | - | chr2_1:73469273-73469292 | Msa0223810:five_prime_UTR | 25.0% |
| GAGAAAGGGAAAATGAATAT+CGG | + | chr2_1:73465546-73465565 | None:intergenic | 30.0% | |
| GCTGAAAATTGAAATGATGA+AGG | + | chr2_1:73465646-73465665 | None:intergenic | 30.0% | |
| !! | TGATTGCTTAGTGTTGTTTA+GGG | - | chr2_1:73465843-73465862 | Msa0223810:CDS | 30.0% |
| ! | CAAGGAATTTTGAATGGAAA+AGG | - | chr2_1:73465867-73465886 | Msa0223810:CDS | 30.0% |
| AATGGAAAAGGACAAATCTT+TGG | - | chr2_1:73465879-73465898 | Msa0223810:CDS | 30.0% | |
| ATGGAAAAGGACAAATCTTT+GGG | - | chr2_1:73465880-73465899 | Msa0223810:CDS | 30.0% | |
| CTATCAAAGCTAATATCATC+CGG | + | chr2_1:73466129-73466148 | None:intergenic | 30.0% | |
| ! | AGCAACGTCTAATTTTCAAA+TGG | - | chr2_1:73466254-73466273 | Msa0223810:intron | 30.0% |
| ! | GCAACGTCTAATTTTCAAAT+GGG | - | chr2_1:73466255-73466274 | Msa0223810:intron | 30.0% |
| ! | TCTAATTTTCAAATGGGTGA+GGG | - | chr2_1:73466261-73466280 | Msa0223810:intron | 30.0% |
| ! | TTCTCTTTCACTATCTTTTC+GGG | - | chr2_1:73466872-73466891 | Msa0223810:intron | 30.0% |
| ! | TTCGGGATAATTTTATTCAC+TGG | - | chr2_1:73466889-73466908 | Msa0223810:intron | 30.0% |
| CATGTTTAGCAAAACTATTG+AGG | - | chr2_1:73466941-73466960 | Msa0223810:intron | 30.0% | |
| ! | GGCACTTTTGTATTATACAT+AGG | + | chr2_1:73467091-73467110 | None:intergenic | 30.0% |
| ! | TGTTATTGTGGTTCATGTTT+TGG | + | chr2_1:73467148-73467167 | None:intergenic | 30.0% |
| GGTATACTTTGCAATTGATA+AGG | - | chr2_1:73467209-73467228 | Msa0223810:intron | 30.0% | |
| ATACTTTGCAATTGATAAGG+AGG | - | chr2_1:73467212-73467231 | Msa0223810:intron | 30.0% | |
| !!! | GATTTTTCTAAGGTCTACTA+AGG | - | chr2_1:73467250-73467269 | Msa0223810:intron | 30.0% |
| ! | TAGTTGTTGTTGTTGTTCTA+AGG | - | chr2_1:73467275-73467294 | Msa0223810:intron | 30.0% |
| TAACTACAATAGACCCATAA+TGG | - | chr2_1:73467402-73467421 | Msa0223810:intron | 30.0% | |
| AACTACAATAGACCCATAAT+GGG | - | chr2_1:73467403-73467422 | Msa0223810:intron | 30.0% | |
| CAAATAAATAAAACGCAACC+TGG | + | chr2_1:73467473-73467492 | None:intergenic | 30.0% | |
| CTTCCAAAAAATCCCATTAT+TGG | - | chr2_1:73467611-73467630 | Msa0223810:intron | 30.0% | |
| AATACCATATATTGATGAGC+TGG | + | chr2_1:73467745-73467764 | None:intergenic | 30.0% | |
| AATATATGGTATTATCCCCT+GGG | - | chr2_1:73467752-73467771 | Msa0223810:intron | 30.0% | |
| TTTGCTTTATCTATTGCACT+TGG | - | chr2_1:73467780-73467799 | Msa0223810:intron | 30.0% | |
| TGCTTATATTTGTGTGTAAC+AGG | - | chr2_1:73467893-73467912 | Msa0223810:intron | 30.0% | |
| TATTTGTGTGTAACAGGATA+TGG | - | chr2_1:73467899-73467918 | Msa0223810:intron | 30.0% | |
| ATTTGTGTGTAACAGGATAT+GGG | - | chr2_1:73467900-73467919 | Msa0223810:intron | 30.0% | |
| !!! | CTATTAGCTTTTAAACCAGA+AGG | + | chr2_1:73468114-73468133 | None:intergenic | 30.0% |
| CTGGTTTAAAAGCTAATAGT+AGG | - | chr2_1:73468115-73468134 | Msa0223810:intron | 30.0% | |
| AATTGCAAGGATATTACACA+CGG | + | chr2_1:73468376-73468395 | None:intergenic | 30.0% | |
| TATAAGCTTGAGAATATCCA+AGG | - | chr2_1:73468575-73468594 | Msa0223810:CDS | 30.0% | |
| TTTAAATGACGCGTTAAAAG+AGG | - | chr2_1:73468670-73468689 | Msa0223810:CDS | 30.0% | |
| !! | AACTTTAATTCTTTTGGAGG+AGG | - | chr2_1:73468752-73468771 | Msa0223810:CDS | 30.0% |
| !! | ACTTTAATTCTTTTGGAGGA+GGG | - | chr2_1:73468753-73468772 | Msa0223810:CDS | 30.0% |
| TCTGATGAAGGATTATCTTT+GGG | + | chr2_1:73469013-73469032 | None:intergenic | 30.0% | |
| ATCTGATGAAGGATTATCTT+TGG | + | chr2_1:73469014-73469033 | None:intergenic | 30.0% | |
| TTCATCAGATGTAAATCCTT+CGG | - | chr2_1:73469024-73469043 | Msa0223810:intron | 30.0% | |
| GCTATGGATATATCAATGTA+GGG | - | chr2_1:73469248-73469267 | Msa0223810:five_prime_UTR | 30.0% | |
| ! | GTTTACTTTGTTGATTGAGA+TGG | - | chr2_1:73469299-73469318 | Msa0223810:five_prime_UTR | 30.0% |
| ! | TTCCCTTTCTCTCTATTTCT+AGG | - | chr2_1:73465555-73465574 | Msa0223810:three_prime_UTR | 35.0% |
| !! | TCCCTTTCTCTCTATTTCTA+GGG | - | chr2_1:73465556-73465575 | Msa0223810:three_prime_UTR | 35.0% |
| ACCCTAGAAATAGAGAGAAA+GGG | + | chr2_1:73465560-73465579 | None:intergenic | 35.0% | |
| AACCCTAGAAATAGAGAGAA+AGG | + | chr2_1:73465561-73465580 | None:intergenic | 35.0% | |
| TGAAGTGATTGAACTGGATT+AGG | - | chr2_1:73465815-73465834 | Msa0223810:CDS | 35.0% | |
| GAAGTGATTGAACTGGATTA+GGG | - | chr2_1:73465816-73465835 | Msa0223810:CDS | 35.0% | |
| ! | AAGTGATTGAACTGGATTAG+GGG | - | chr2_1:73465817-73465836 | Msa0223810:CDS | 35.0% |
| !! | GTGATTGCTTAGTGTTGTTT+AGG | - | chr2_1:73465842-73465861 | Msa0223810:CDS | 35.0% |
| ! | TAGGGTCAAGGAATTTTGAA+TGG | - | chr2_1:73465861-73465880 | Msa0223810:CDS | 35.0% |
| !! | ATTAGCTTTGATAGTGACCT+CGG | - | chr2_1:73466135-73466154 | Msa0223810:intron | 35.0% |
| CTTATCCATATCAAGGTACA+TGG | + | chr2_1:73466220-73466239 | None:intergenic | 35.0% | |
| ! | GTCTAATTTTCAAATGGGTG+AGG | - | chr2_1:73466260-73466279 | Msa0223810:intron | 35.0% |
| ! | CTAATTTTCAAATGGGTGAG+GGG | - | chr2_1:73466262-73466281 | Msa0223810:intron | 35.0% |
| ! | CAGTTGGTACTACAAATGAA+AGG | - | chr2_1:73466370-73466389 | Msa0223810:intron | 35.0% |
| TTCCAAAAAAGCAATGTCAG+CGG | - | chr2_1:73466491-73466510 | Msa0223810:intron | 35.0% | |
| ! | TAATACCTTTTTGCACGCTT+GGG | + | chr2_1:73466546-73466565 | None:intergenic | 35.0% |
| ! | ATAATACCTTTTTGCACGCT+TGG | + | chr2_1:73466547-73466566 | None:intergenic | 35.0% |
| AGTCAATAATATAGACCGAG+TGG | + | chr2_1:73466789-73466808 | None:intergenic | 35.0% | |
| ! | CATGTTGGTGAAAAAAAAGG+TGG | + | chr2_1:73466813-73466832 | None:intergenic | 35.0% |
| AATGACAAAACAGAGCTTTG+AGG | + | chr2_1:73466845-73466864 | None:intergenic | 35.0% | |
| ! | TCAAAGCTCTGTTTTGTCAT+TGG | - | chr2_1:73466844-73466863 | Msa0223810:intron | 35.0% |
| TTTAGCAAAACTATTGAGGC+AGG | - | chr2_1:73466945-73466964 | Msa0223810:intron | 35.0% | |
| !! | ATGTATTGAGTCTTTGAGAC+AGG | - | chr2_1:73466990-73467009 | Msa0223810:intron | 35.0% |
| !! | TTTGAGACAGGATAGGATTT+TGG | - | chr2_1:73467002-73467021 | Msa0223810:intron | 35.0% |
| TGTGGCATACGAAATATTGT+AGG | - | chr2_1:73467182-73467201 | Msa0223810:intron | 35.0% | |
| GGTCTACTGAAAGAAAATGT+TGG | - | chr2_1:73467296-73467315 | Msa0223810:intron | 35.0% | |
| ! | GCAAATGTTTTGCAAATGCT+AGG | - | chr2_1:73467373-73467392 | Msa0223810:intron | 35.0% |
| TACTTCCATGATAACATCCA+GGG | + | chr2_1:73467439-73467458 | None:intergenic | 35.0% | |
| GAAATACTGCTCAGATAGAA+TGG | - | chr2_1:73467672-73467691 | Msa0223810:intron | 35.0% | |
| AGTTCCAGCTCATCAATATA+TGG | - | chr2_1:73467738-73467757 | Msa0223810:intron | 35.0% | |
| CAATATATGGTATTATCCCC+TGG | - | chr2_1:73467751-73467770 | Msa0223810:intron | 35.0% | |
| TATTGCACTTGGAAAGTGAT+GGG | - | chr2_1:73467791-73467810 | Msa0223810:intron | 35.0% | |
| TATGAACAGAGAGATACAAG+TGG | - | chr2_1:73468163-73468182 | Msa0223810:intron | 35.0% | |
| !! | TGGCTGCAAAATTTTGTTGT+TGG | - | chr2_1:73468481-73468500 | Msa0223810:CDS | 35.0% |
| !!! | GGCTGCAAAATTTTGTTGTT+GGG | - | chr2_1:73468482-73468501 | Msa0223810:CDS | 35.0% |
| !!! | GCAAAATTTTGTTGTTGGGT+TGG | - | chr2_1:73468486-73468505 | Msa0223810:CDS | 35.0% |
| ! | ACGCGTCATTTAAAGCTATA+AGG | + | chr2_1:73468664-73468683 | None:intergenic | 35.0% |
| TGCATGGCATGGTTATTATT+GGG | + | chr2_1:73468791-73468810 | None:intergenic | 35.0% | |
| TTTGTTGCTGCTGTATTTGT+TGG | + | chr2_1:73468904-73468923 | None:intergenic | 35.0% | |
| GAACAACAACAACAACAATC+AGG | - | chr2_1:73468953-73468972 | Msa0223810:intron | 35.0% | |
| CTGATGAAGGATTATCTTTG+GGG | + | chr2_1:73469012-73469031 | None:intergenic | 35.0% | |
| GAAGGATTTACATCTGATGA+AGG | + | chr2_1:73469025-73469044 | None:intergenic | 35.0% | |
| TATCCATAGCCAATTAACTG+AGG | + | chr2_1:73469238-73469257 | None:intergenic | 35.0% | |
| GGCTATGGATATATCAATGT+AGG | - | chr2_1:73469247-73469266 | Msa0223810:five_prime_UTR | 35.0% | |
| ! | GTTTGATTCGTTGACGAGAA+TGG | - | chr2_1:73465447-73465466 | Msa0223810:three_prime_UTR | 40.0% |
| !!! | GGGTTTTGAAGTGATTGAAC+TGG | - | chr2_1:73465809-73465828 | Msa0223810:CDS | 40.0% |
| !! | CTTAGTGTTGTTTAGGGTCA+AGG | - | chr2_1:73465849-73465868 | Msa0223810:CDS | 40.0% |
| AAGGACAAATCTTTGGGTCT+TGG | - | chr2_1:73465886-73465905 | Msa0223810:CDS | 40.0% | |
| ACATTGAAACCACTTCCAGT+TGG | + | chr2_1:73465955-73465974 | None:intergenic | 40.0% | |
| GATAATCCTCCGAGAAATAG+AGG | - | chr2_1:73466069-73466088 | Msa0223810:CDS | 40.0% | |
| ! | CGTCTATGACCTCTATTTCT+CGG | + | chr2_1:73466081-73466100 | None:intergenic | 40.0% |
| AAAGCTAATATCATCCGGCA+AGG | + | chr2_1:73466124-73466143 | None:intergenic | 40.0% | |
| CATGGACAACAAATCTTCCT+CGG | + | chr2_1:73466202-73466221 | None:intergenic | 40.0% | |
| GTTGTCCATGTACCTTGATA+TGG | - | chr2_1:73466212-73466231 | Msa0223810:intron | 40.0% | |
| ! | CAAACCTGAGATGTTAGTCT+CGG | - | chr2_1:73466443-73466462 | Msa0223810:intron | 40.0% |
| ! | AAACCTGAGATGTTAGTCTC+GGG | - | chr2_1:73466444-73466463 | Msa0223810:intron | 40.0% |
| ! | AATACCTTTTTGCACGCTTG+GGG | + | chr2_1:73466545-73466564 | None:intergenic | 40.0% |
| ! | CGGCATGTTGGTGAAAAAAA+AGG | + | chr2_1:73466816-73466835 | None:intergenic | 40.0% |
| !! | ACAGAGCTTTGAGGAATTCA+CGG | + | chr2_1:73466836-73466855 | None:intergenic | 40.0% |
| CAAAACTATTGAGGCAGGAT+AGG | - | chr2_1:73466950-73466969 | Msa0223810:intron | 40.0% | |
| !! | TTGAGTCTTTGAGACAGGAT+AGG | - | chr2_1:73466995-73467014 | Msa0223810:intron | 40.0% |
| CTACTTCCATGATAACATCC+AGG | + | chr2_1:73467440-73467459 | None:intergenic | 40.0% | |
| ! | ACACACTCACACCATTGTTT+TGG | - | chr2_1:73467538-73467557 | Msa0223810:intron | 40.0% |
| !!! | GGCCCAATAATGGGATTTTT+TGG | + | chr2_1:73467617-73467636 | None:intergenic | 40.0% |
| GGATCAAAAGGCCCAATAAT+GGG | + | chr2_1:73467626-73467645 | None:intergenic | 40.0% | |
| ATAAAGCAAAATAGGCCCAG+GGG | + | chr2_1:73467770-73467789 | None:intergenic | 40.0% | |
| GATAAAGCAAAATAGGCCCA+GGG | + | chr2_1:73467771-73467790 | None:intergenic | 40.0% | |
| AGATAAAGCAAAATAGGCCC+AGG | + | chr2_1:73467772-73467791 | None:intergenic | 40.0% | |
| CTATTGCACTTGGAAAGTGA+TGG | - | chr2_1:73467790-73467809 | Msa0223810:intron | 40.0% | |
| TAAGCAGTGTTTGTCGATGT+TGG | + | chr2_1:73467879-73467898 | None:intergenic | 40.0% | |
| GTAACAGGATATGGGCAAAT+AGG | - | chr2_1:73467908-73467927 | Msa0223810:intron | 40.0% | |
| GCTATATTGCTGAGCTTGAA+AGG | - | chr2_1:73467965-73467984 | Msa0223810:intron | 40.0% | |
| ! | GAAAGTGCAGACATTGCAAA+CGG | - | chr2_1:73467987-73468006 | Msa0223810:intron | 40.0% |
| CCAGAAGGCGAAATAGTAAT+TGG | + | chr2_1:73468099-73468118 | None:intergenic | 40.0% | |
| CCAATTACTATTTCGCCTTC+TGG | - | chr2_1:73468096-73468115 | Msa0223810:intron | 40.0% | |
| AAGCTTGAGAATATCCAAGG+TGG | - | chr2_1:73468578-73468597 | Msa0223810:CDS | 40.0% | |
| TCAAGATAAACTGTCCACCT+TGG | + | chr2_1:73468595-73468614 | None:intergenic | 40.0% | |
| !! | ACGCATTTGAAAGTACTGAC+TGG | - | chr2_1:73468698-73468717 | Msa0223810:CDS | 40.0% |
| !! | CGCATTTGAAAGTACTGACT+GGG | - | chr2_1:73468699-73468718 | Msa0223810:CDS | 40.0% |
| AAGTTCATAGGTCCTCCATT+TGG | + | chr2_1:73468737-73468756 | None:intergenic | 40.0% | |
| GTGCATGGCATGGTTATTAT+TGG | + | chr2_1:73468792-73468811 | None:intergenic | 40.0% | |
| TTCTTGGCACCTCAGTTAAT+TGG | - | chr2_1:73469226-73469245 | Msa0223810:five_prime_UTR | 40.0% | |
| CGGAATGAAGAGAGAGAAAG+TGG | + | chr2_1:73465526-73465545 | None:intergenic | 45.0% | |
| GTAGATCAGGGGAGATAGAT+TGG | + | chr2_1:73465597-73465616 | None:intergenic | 45.0% | |
| GACAAATCTTTGGGTCTTGG+CGG | - | chr2_1:73465889-73465908 | Msa0223810:CDS | 45.0% | |
| TATCCGGGTTATTCACCAAC+TGG | - | chr2_1:73465937-73465956 | Msa0223810:CDS | 45.0% | |
| !! | CTTCCAGTTGGTGAATAACC+CGG | + | chr2_1:73465943-73465962 | None:intergenic | 45.0% |
| GGTTATTCACCAACTGGAAG+TGG | - | chr2_1:73465943-73465962 | Msa0223810:CDS | 45.0% | |
| AAAGCCACTAGAATCTGAGC+TGG | + | chr2_1:73466025-73466044 | None:intergenic | 45.0% | |
| ! | CTATGACCTCTATTTCTCGG+AGG | + | chr2_1:73466078-73466097 | None:intergenic | 45.0% |
| TTCCGAGATTCTTACCTTGC+CGG | - | chr2_1:73466107-73466126 | Msa0223810:intron | 45.0% | |
| ATCCGGCAAGGTAAGAATCT+CGG | + | chr2_1:73466112-73466131 | None:intergenic | 45.0% | |
| TCGGTATCATCAGAGAAGGA+CGG | + | chr2_1:73466183-73466202 | None:intergenic | 45.0% | |
| TTCCTCGGTATCATCAGAGA+AGG | + | chr2_1:73466187-73466206 | None:intergenic | 45.0% | |
| ! | TACCTCTTCTGGGGAAAACA+TGG | - | chr2_1:73466347-73466366 | Msa0223810:intron | 45.0% |
| TTGTTGACCCATCCATGGAT+TGG | + | chr2_1:73466419-73466438 | None:intergenic | 45.0% | |
| ! | GATTGTTGTTGACCCATCCA+TGG | + | chr2_1:73466424-73466443 | None:intergenic | 45.0% |
| !!! | TGCCGCTGACATTGCTTTTT+TGG | + | chr2_1:73466496-73466515 | None:intergenic | 45.0% |
| ATCCTGACGTGTATTCCACT+CGG | - | chr2_1:73466771-73466790 | Msa0223810:CDS | 45.0% | |
| TTGAGGAATTCACGGCATGT+TGG | + | chr2_1:73466828-73466847 | None:intergenic | 45.0% | |
| CCATGATAACATCCAGGGAA+GGG | + | chr2_1:73467434-73467453 | None:intergenic | 45.0% | |
| TCCATGATAACATCCAGGGA+AGG | + | chr2_1:73467435-73467454 | None:intergenic | 45.0% | |
| GGGATCAAAAGGCCCAATAA+TGG | + | chr2_1:73467627-73467646 | None:intergenic | 45.0% | |
| ATAGAATGGCCTCCCTTAGA+GGG | - | chr2_1:73467686-73467705 | Msa0223810:intron | 45.0% | |
| GTATAGACTGTGCCCTCTAA+GGG | + | chr2_1:73467701-73467720 | None:intergenic | 45.0% | |
| TGTATAGACTGTGCCCTCTA+AGG | + | chr2_1:73467702-73467721 | None:intergenic | 45.0% | |
| TGCGCAGTTAACTCTCTTAC+AGG | - | chr2_1:73468026-73468045 | Msa0223810:intron | 45.0% | |
| !! | CAAGTGAACTTGTTGCTCCA+TGG | + | chr2_1:73468230-73468249 | None:intergenic | 45.0% |
| CAACAAGTTCACTTGCAGGA+TGG | - | chr2_1:73468235-73468254 | Msa0223810:CDS | 45.0% | |
| AGCAGCAAAGTAGTAGCTTC+AGG | + | chr2_1:73468286-73468305 | None:intergenic | 45.0% | |
| GTGCATGTTTAGTGTGAAGC+TGG | - | chr2_1:73468461-73468480 | Msa0223810:CDS | 45.0% | |
| TTCATAGGTCCTCCATTTGG+CGG | + | chr2_1:73468734-73468753 | None:intergenic | 45.0% | |
| !! | TGATGTTGCTGCTGTTTCTG+AGG | + | chr2_1:73468857-73468876 | None:intergenic | 45.0% |
| !! | GAAGGATTATCTTTGGGGCA+TGG | + | chr2_1:73469007-73469026 | None:intergenic | 45.0% |
| CGCAGTTTCTCAACAATCCT+TGG | + | chr2_1:73469053-73469072 | None:intergenic | 45.0% | |
| GCACCTCAGTTAATTGGCTA+TGG | - | chr2_1:73469232-73469251 | Msa0223810:five_prime_UTR | 45.0% | |
| TCTATCTCCCCTGATCTACG+CGG | - | chr2_1:73465598-73465617 | Msa0223810:three_prime_UTR | 50.0% | |
| AAATCTTTGGGTCTTGGCGG+TGG | - | chr2_1:73465892-73465911 | Msa0223810:CDS | 50.0% | |
| ACCTCCATCAGGACGTTATC+CGG | - | chr2_1:73465921-73465940 | Msa0223810:CDS | 50.0% | |
| TAACCCGGATAACGTCCTGA+TGG | + | chr2_1:73465928-73465947 | None:intergenic | 50.0% | |
| ! | CTAGAATCTGAGCTGGTTCC+AGG | + | chr2_1:73466018-73466037 | None:intergenic | 50.0% |
| GGAACCAGCTCAGATTCTAG+TGG | - | chr2_1:73466018-73466037 | Msa0223810:CDS | 50.0% | |
| ! | GATAGTGACCTCGGTGTAGT+TGG | - | chr2_1:73466144-73466163 | Msa0223810:intron | 50.0% |
| GTCCTTCTCTGATGATACCG+AGG | - | chr2_1:73466182-73466201 | Msa0223810:intron | 50.0% | |
| ATCAGGTTTGGCGCCAATGT+CGG | - | chr2_1:73466302-73466321 | Msa0223810:intron | 50.0% | |
| ! | TGCCATGTTTTCCCCAGAAG+AGG | + | chr2_1:73466352-73466371 | None:intergenic | 50.0% |
| TCTGGGGAAAACATGGCAGT+TGG | - | chr2_1:73466354-73466373 | Msa0223810:intron | 50.0% | |
| ! | CTGTGCTGGTGTCTGATTCT+GGG | + | chr2_1:73466396-73466415 | None:intergenic | 50.0% |
| AGCACAGCCAATCCATGGAT+GGG | - | chr2_1:73466409-73466428 | Msa0223810:intron | 50.0% | |
| GAACCCGAGACTAACATCTC+AGG | + | chr2_1:73466450-73466469 | None:intergenic | 50.0% | |
| TTGACCCCAAGCGTGCAAAA+AGG | - | chr2_1:73466538-73466557 | Msa0223810:CDS | 50.0% | |
| GGAAGGGTTGGACCCATTAT+GGG | + | chr2_1:73467418-73467437 | None:intergenic | 50.0% | |
| GATAACATCCAGGGAAGGGT+TGG | + | chr2_1:73467430-73467449 | None:intergenic | 50.0% | |
| CCCTTCCCTGGATGTTATCA+TGG | - | chr2_1:73467431-73467450 | Msa0223810:intron | 50.0% | |
| ! | GGAAGTAGCTCTATAGCACC+AGG | - | chr2_1:73467452-73467471 | Msa0223810:intron | 50.0% |
| ATCAATACCTGCCGCAGTGT+GGG | + | chr2_1:73467652-73467671 | None:intergenic | 50.0% | |
| GATAGAATGGCCTCCCTTAG+AGG | - | chr2_1:73467685-73467704 | Msa0223810:intron | 50.0% | |
| ATGGGCAAATAGGCAGTCTG+CGG | - | chr2_1:73467918-73467937 | Msa0223810:intron | 50.0% | |
| CTGCGGCAAGGTCAAAAGAA+AGG | - | chr2_1:73467935-73467954 | Msa0223810:intron | 50.0% | |
| AGAACAGTGAGCTGAAGCTG+CGG | - | chr2_1:73468197-73468216 | Msa0223810:intron | 50.0% | |
| GGAGCAACAAGTTCACTTGC+AGG | - | chr2_1:73468231-73468250 | Msa0223810:CDS | 50.0% | |
| ! | CCAAAAGAGTGTGCATGGCA+TGG | + | chr2_1:73468802-73468821 | None:intergenic | 50.0% |
| ! | CCATGCCATGCACACTCTTT+TGG | - | chr2_1:73468799-73468818 | Msa0223810:CDS | 50.0% |
| ! | TGCAGCCAAAAGAGTGTGCA+TGG | + | chr2_1:73468807-73468826 | None:intergenic | 50.0% |
| ACAACAAATGCAGCAGCAGC+AGG | - | chr2_1:73468931-73468950 | Msa0223810:five_prime_UTR | 50.0% | |
| !! | GGATTATCTTTGGGGCATGG+AGG | + | chr2_1:73469004-73469023 | None:intergenic | 50.0% |
| TGTAAATCCTTCGGCAGCCA+AGG | - | chr2_1:73469033-73469052 | Msa0223810:intron | 50.0% | |
| !! | TTGTCTCGGTGTCCTAGTGT+TGG | - | chr2_1:73469100-73469119 | Msa0223810:intron | 50.0% |
| ! | GGTGGTTTTCCACCTCCATC+AGG | - | chr2_1:73465910-73465929 | Msa0223810:CDS | 55.0% |
| GGATAACGTCCTGATGGAGG+TGG | + | chr2_1:73465922-73465941 | None:intergenic | 55.0% | |
| CCTCCATCAGGACGTTATCC+GGG | - | chr2_1:73465922-73465941 | Msa0223810:CDS | 55.0% | |
| ! | AGTGACCTCGGTGTAGTTGG+TGG | - | chr2_1:73466147-73466166 | Msa0223810:intron | 55.0% |
| !! | GGTGTAGTTGGTGGTGCTGA+TGG | - | chr2_1:73466156-73466175 | Msa0223810:intron | 55.0% |
| ! | TCTAATGCTGCCGGAGCATC+AGG | - | chr2_1:73466285-73466304 | Msa0223810:intron | 55.0% |
| GTTTGGCGCCAATGTCGGTA+GGG | - | chr2_1:73466307-73466326 | Msa0223810:intron | 55.0% | |
| GATGTCTGCCCTACCGACAT+TGG | + | chr2_1:73466318-73466337 | None:intergenic | 55.0% | |
| ATGTCGGTAGGGCAGACATC+AGG | - | chr2_1:73466318-73466337 | Msa0223810:intron | 55.0% | |
| TGTCGGTAGGGCAGACATCA+GGG | - | chr2_1:73466319-73466338 | Msa0223810:intron | 55.0% | |
| ! | GCTGTGCTGGTGTCTGATTC+TGG | + | chr2_1:73466397-73466416 | None:intergenic | 55.0% |
| ACACCAGCACAGCCAATCCA+TGG | - | chr2_1:73466404-73466423 | Msa0223810:intron | 55.0% | |
| !! | CATCCATGGATTGGCTGTGC+TGG | + | chr2_1:73466410-73466429 | None:intergenic | 55.0% |
| CAGCACAGCCAATCCATGGA+TGG | - | chr2_1:73466408-73466427 | Msa0223810:intron | 55.0% | |
| TGCACGCTTGGGGTCAATCA+AGG | + | chr2_1:73466535-73466554 | None:intergenic | 55.0% | |
| GACCGAGTGGAATACACGTC+AGG | + | chr2_1:73466776-73466795 | None:intergenic | 55.0% | |
| GGGAAGGGTTGGACCCATTA+TGG | + | chr2_1:73467419-73467438 | None:intergenic | 55.0% | |
| ! | TAATGGGTCCAACCCTTCCC+TGG | - | chr2_1:73467419-73467438 | Msa0223810:intron | 55.0% |
| CAGTGTGGGAGGGGATCAAA+AGG | + | chr2_1:73467638-73467657 | None:intergenic | 55.0% | |
| TTTGATCCCCTCCCACACTG+CGG | - | chr2_1:73467638-73467657 | Msa0223810:intron | 55.0% | |
| CATCAATACCTGCCGCAGTG+TGG | + | chr2_1:73467653-73467672 | None:intergenic | 55.0% | |
| ! | TAGACTGTGCCCTCTAAGGG+AGG | + | chr2_1:73467698-73467717 | None:intergenic | 55.0% |
| CAAATAGGCAGTCTGCGGCA+AGG | - | chr2_1:73467923-73467942 | Msa0223810:intron | 55.0% | |
| GAAGCTGCGGTTGCAAACCA+TGG | - | chr2_1:73468210-73468229 | Msa0223810:CDS | 55.0% | |
| CAAGCTATGCCGCCAAATGG+AGG | - | chr2_1:73468722-73468741 | Msa0223810:CDS | 55.0% | |
| CAACAATCCTTGGCTGCCGA+AGG | + | chr2_1:73469043-73469062 | None:intergenic | 55.0% | |
| !! | CTCGGTGTCCTAGTGTTGGT+AGG | - | chr2_1:73469104-73469123 | Msa0223810:intron | 55.0% |
| GGCTGCAACCTACCAACACT+AGG | + | chr2_1:73469115-73469134 | None:intergenic | 55.0% | |
| CTTTGCGCCGCGTAGATCAG+GGG | + | chr2_1:73465608-73465627 | None:intergenic | 60.0% | |
| CCTTTGCGCCGCGTAGATCA+GGG | + | chr2_1:73465609-73465628 | None:intergenic | 60.0% | |
| ACCTTTGCGCCGCGTAGATC+AGG | + | chr2_1:73465610-73465629 | None:intergenic | 60.0% | |
| CCCGGATAACGTCCTGATGG+AGG | + | chr2_1:73465925-73465944 | None:intergenic | 60.0% | |
| ! | GGCGGATACGACGATGATGG+GGG | + | chr2_1:73465988-73466007 | None:intergenic | 60.0% |
| CGGCGGATACGACGATGATG+GGG | + | chr2_1:73465989-73466008 | None:intergenic | 60.0% | |
| GCGGCGGATACGACGATGAT+GGG | + | chr2_1:73465990-73466009 | None:intergenic | 60.0% | |
| AGCGGCGGATACGACGATGA+TGG | + | chr2_1:73465991-73466010 | None:intergenic | 60.0% | |
| ! | GAGCTGGTTCCAGGAGCAAG+CGG | + | chr2_1:73466009-73466028 | None:intergenic | 60.0% |
| CAGCACCACCAACTACACCG+AGG | + | chr2_1:73466155-73466174 | None:intergenic | 60.0% | |
| GGTGAGGGGTCTAATGCTGC+CGG | - | chr2_1:73466276-73466295 | Msa0223810:intron | 60.0% | |
| ! | TGCTGCCGGAGCATCAGGTT+TGG | - | chr2_1:73466290-73466309 | Msa0223810:intron | 60.0% |
| TGGCGCCAAACCTGATGCTC+CGG | + | chr2_1:73466298-73466317 | None:intergenic | 60.0% | |
| GGTTTGGCGCCAATGTCGGT+AGG | - | chr2_1:73466306-73466325 | Msa0223810:intron | 60.0% | |
| GTCGGTAGGGCAGACATCAG+GGG | - | chr2_1:73466320-73466339 | Msa0223810:intron | 60.0% | |
| TCGGTAGGGCAGACATCAGG+GGG | - | chr2_1:73466321-73466340 | Msa0223810:intron | 60.0% | |
| !! | TCAGGGGGAGGTACCTCTTC+TGG | - | chr2_1:73466336-73466355 | Msa0223810:intron | 60.0% |
| !! | CAGGGGGAGGTACCTCTTCT+GGG | - | chr2_1:73466337-73466356 | Msa0223810:intron | 60.0% |
| !! | AGGGGGAGGTACCTCTTCTG+GGG | - | chr2_1:73466338-73466357 | Msa0223810:intron | 60.0% |
| ATACCTGCCGCAGTGTGGGA+GGG | + | chr2_1:73467648-73467667 | None:intergenic | 60.0% | |
| AATACCTGCCGCAGTGTGGG+AGG | + | chr2_1:73467649-73467668 | None:intergenic | 60.0% | |
| GGGCAAGCTATGCCGCCAAA+TGG | - | chr2_1:73468719-73468738 | Msa0223810:CDS | 60.0% | |
| CCCTGATCTACGCGGCGCAA+AGG | - | chr2_1:73465606-73465625 | Msa0223810:three_prime_UTR | 65.0% | |
| TCGTATCCGCCGCTTGCTCC+TGG | - | chr2_1:73465997-73466016 | Msa0223810:CDS | 65.0% | |
| CTGGTTCCAGGAGCAAGCGG+CGG | + | chr2_1:73466006-73466025 | None:intergenic | 65.0% | |
| GTAGGGCAGACATCAGGGGG+AGG | - | chr2_1:73466324-73466343 | Msa0223810:intron | 65.0% | |
| TACCTGCCGCAGTGTGGGAG+GGG | + | chr2_1:73467647-73467666 | None:intergenic | 65.0% | |
| ATCCCCTCCCACACTGCGGC+AGG | - | chr2_1:73467642-73467661 | Msa0223810:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 73465436 | 73469325 | 73465436 | ID=Msa0223810;Name=Msa0223810 |
| chr2_1 | mRNA | 73465436 | 73469325 | 73465436 | ID=Msa0223810-mRNA-1;Parent=Msa0223810;Name=Msa0223810-mRNA-1;_AED=0.08;_eAED=0.08;_QI=262|1|1|1|0.75|0.6|5|262|430 |
| chr2_1 | exon | 73465436 | 73466092 | 73465436 | ID=Msa0223810-mRNA-1:exon:21563;Parent=Msa0223810-mRNA-1 |
| chr2_1 | exon | 73466505 | 73466589 | 73466505 | ID=Msa0223810-mRNA-1:exon:21562;Parent=Msa0223810-mRNA-1 |
| chr2_1 | exon | 73466714 | 73466846 | 73466714 | ID=Msa0223810-mRNA-1:exon:21561;Parent=Msa0223810-mRNA-1 |
| chr2_1 | exon | 73468202 | 73468951 | 73468202 | ID=Msa0223810-mRNA-1:exon:21560;Parent=Msa0223810-mRNA-1 |
| chr2_1 | exon | 73469134 | 73469325 | 73469134 | ID=Msa0223810-mRNA-1:exon:21559;Parent=Msa0223810-mRNA-1 |
| chr2_1 | five_prime_UTR | 73469134 | 73469325 | 73469134 | ID=Msa0223810-mRNA-1:five_prime_utr;Parent=Msa0223810-mRNA-1 |
| chr2_1 | five_prime_UTR | 73468882 | 73468951 | 73468882 | ID=Msa0223810-mRNA-1:five_prime_utr;Parent=Msa0223810-mRNA-1 |
| chr2_1 | CDS | 73468202 | 73468881 | 73468202 | ID=Msa0223810-mRNA-1:cds;Parent=Msa0223810-mRNA-1 |
| chr2_1 | CDS | 73466714 | 73466846 | 73466714 | ID=Msa0223810-mRNA-1:cds;Parent=Msa0223810-mRNA-1 |
| chr2_1 | CDS | 73466505 | 73466589 | 73466505 | ID=Msa0223810-mRNA-1:cds;Parent=Msa0223810-mRNA-1 |
| chr2_1 | CDS | 73465698 | 73466092 | 73465698 | ID=Msa0223810-mRNA-1:cds;Parent=Msa0223810-mRNA-1 |
| chr2_1 | three_prime_UTR | 73465436 | 73465697 | 73465436 | ID=Msa0223810-mRNA-1:three_prime_utr;Parent=Msa0223810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
