Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0225260 | XP_024632959.1 | 68.359 | 256 | 45 | 5 | 1 | 247 | 1 | 229 | 5.62e-94 | 296 |
| Msa0225260 | XP_024632959.1 | 81.024 | 332 | 47 | 5 | 95 | 412 | 1 | 330 | 1.27e-177 | 508 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0225260 | A0A396JGH2 | 68.359 | 256 | 45 | 5 | 1 | 247 | 1 | 229 | 2.68e-94 | 296 |
| Msa0225260 | A0A396JGH2 | 81.024 | 332 | 47 | 5 | 95 | 412 | 1 | 330 | 6.08e-178 | 508 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0225260 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0225260 | MtrunA17_Chr2g0331601 | 81.024 | 332 | 47 | 5 | 95 | 412 | 1 | 330 | 0.0 | 508 |
| Msa0225260 | MtrunA17_Chr2g0331601 | 68.359 | 256 | 45 | 5 | 1 | 247 | 1 | 229 | 5.16e-98 | 296 |
| Msa0225260 | MtrunA17_Chr6g0481281 | 40.767 | 287 | 91 | 7 | 195 | 412 | 30 | 306 | 3.81e-54 | 182 |
| Msa0225260 | MtrunA17_Chr6g0481281 | 62.319 | 69 | 21 | 2 | 11 | 75 | 27 | 94 | 9.70e-17 | 80.5 |
| Msa0225260 | MtrunA17_Chr6g0481281 | 59.420 | 69 | 23 | 2 | 109 | 172 | 30 | 98 | 6.41e-15 | 75.1 |
| Msa0225260 | MtrunA17_Chr5g0448221 | 31.429 | 175 | 80 | 5 | 216 | 370 | 55 | 209 | 1.04e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0225260 | AT5G56200.1 | 38.542 | 96 | 45 | 2 | 225 | 320 | 79 | 160 | 1.17e-12 | 69.7 |
| Msa0225260 | AT2G26940.1 | 37.143 | 105 | 61 | 1 | 225 | 324 | 49 | 153 | 8.41e-12 | 65.9 |
Find 74 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATCTCTCTTCTGCCATTT+TGG | 0.136557 | 2_1:-75395609 | Msa0225250:intron |
| CAATACAAGGTAGTTATAAT+AGG | 0.224337 | 2_1:+75394848 | Msa0225260:CDS |
| CAATACAAGGTAGTAATAAT+AGG | 0.229853 | 2_1:+75395388 | Msa0225260:CDS |
| TGATAATACTATGGCTAGTT+TGG | 0.303196 | 2_1:+75395116 | Msa0225260:CDS |
| GTGATTTATCTTTGCCAAAA+TGG | 0.304193 | 2_1:+75395595 | Msa0225260:CDS |
| GTCCTTTAAAATCTCTATTC+CGG | 0.308881 | 2_1:-75395530 | Msa0225250:intron |
| CATGATGAAGTTTCTGCTTA+AGG | 0.329845 | 2_1:-75395080 | Msa0225250:intron |
| ACAAAAGGTTGATAATACTA+TGG | 0.403285 | 2_1:+75395107 | Msa0225260:CDS |
| GTGACCATACAAAGCATTCA+TGG | 0.407800 | 2_1:-75395496 | Msa0225250:intron |
| CCAACCATGAATGCTTTGTA+TGG | 0.410676 | 2_1:+75395492 | Msa0225260:CDS |
| AATACAAGGTAGTAATAATA+GGG | 0.421996 | 2_1:+75395389 | Msa0225260:CDS |
| TTACTACCTTGTATTGAGAA+AGG | 0.427202 | 2_1:-75395381 | Msa0225250:intron |
| TACTACCTTGTATTGAGAAA+GGG | 0.428907 | 2_1:-75395380 | Msa0225250:intron |
| AATACAAGGTAGTTATAATA+GGG | 0.431054 | 2_1:+75394849 | Msa0225260:CDS |
| CACATCAGTGCAATGTTTGT+GGG | 0.435235 | 2_1:+75394725 | Msa0225260:CDS |
| ACACATCAGTGCAATGTTTG+TGG | 0.442286 | 2_1:+75395264 | Msa0225260:CDS |
| TTTAGCAATGGAAAAGCATT+GGG | 0.444822 | 2_1:+75394754 | Msa0225260:CDS |
| TCACATCAGTGCAATGTTTG+TGG | 0.451639 | 2_1:+75394724 | Msa0225260:CDS |
| TTTAGTAACGGAAAAGCATT+GGG | 0.453684 | 2_1:+75395294 | Msa0225260:CDS |
| ATTCGGAAAAGAGGATGAAA+AGG | 0.459648 | 2_1:+75394638 | Msa0225260:CDS |
| TGAGAAAACCTATGAAGATT+CGG | 0.461549 | 2_1:+75394621 | Msa0225260:CDS |
| TTTAGCAACGGAAAAGCATT+GGG | 0.462037 | 2_1:+75395036 | Msa0225260:CDS |
| TGTGTTGGTGAAACATCAAA+TGG | 0.466991 | 2_1:+75395705 | Msa0225260:CDS |
| AGTCAGAAAAGAGGGTGAAA+AGG | 0.473192 | 2_1:+75395178 | Msa0225260:CDS |
| GAATGAGTCGTATGTTATAG+AGG | 0.473597 | 2_1:+75395806 | Msa0225260:CDS |
| GATGATGAAGAAGAAATTGA+TGG | 0.474180 | 2_1:+75395429 | Msa0225260:CDS |
| AGAAGAGGTAGAAAGTGTAT+TGG | 0.483023 | 2_1:+75395630 | Msa0225260:CDS |
| AGTCTGAAAAGAGGATAAAG+AGG | 0.489348 | 2_1:+75394920 | Msa0225260:CDS |
| AGTGATAAGCAGCCAAAGAA+AGG | 0.491245 | 2_1:+75395765 | Msa0225260:CDS |
| TTTGATAAAGATAGTAAGCA+TGG | 0.491925 | 2_1:+75394877 | Msa0225260:CDS |
| AAGCAGCCAAAGAAAGGAAA+AGG | 0.495623 | 2_1:+75395771 | Msa0225260:CDS |
| ACTTCATCATGATTCACAAA+AGG | 0.507116 | 2_1:+75395092 | Msa0225260:CDS |
| ACTCAATCATCATCAACAAA+AGG | 0.509294 | 2_1:+75395350 | Msa0225260:CDS |
| AACTACCTTGTATTGAGAGA+GGG | 0.509993 | 2_1:-75394840 | Msa0225250:intron |
| CCTATGAAGATTCGGAAAAG+AGG | 0.512041 | 2_1:+75394629 | Msa0225260:CDS |
| ACTTAATCATCGTTCACAAA+AGG | 0.517591 | 2_1:+75394810 | Msa0225260:CDS |
| CATAAAGAAGATCAAGATGA+TGG | 0.521149 | 2_1:+75395573 | Msa0225260:CDS |
| GCTTAAGGAAGTGAGATCTT+CGG | 0.523012 | 2_1:-75395065 | Msa0225250:intron |
| CAAACCCCTCTCTCAATACA+AGG | 0.526964 | 2_1:+75394835 | Msa0225260:CDS |
| TGGGAATGGCAAGAATGAGC+TGG | 0.528852 | 2_1:+75395725 | Msa0225260:CDS |
| TCTTAAGAAAGTGAGATCTC+CGG | 0.549197 | 2_1:-75394783 | Msa0225250:intron |
| TCTTAAGAAAGTGAGATCTC+CGG | 0.549197 | 2_1:-75395323 | Msa0225250:intron |
| CCCGTGAAGAGTCTGAAAAG+AGG | 0.549764 | 2_1:+75394911 | Msa0225260:CDS |
| GAAAAGCATTGGGTGGTCAC+CGG | 0.556634 | 2_1:+75394764 | Msa0225260:CDS |
| GAAAAGCATTGGGTGGTCAC+CGG | 0.560535 | 2_1:+75395304 | Msa0225260:CDS |
| ACTACCTTGTATTGAGAAAG+GGG | 0.563148 | 2_1:-75395379 | Msa0225250:intron |
| AAAACCCCTTTCTCAATACA+AGG | 0.568454 | 2_1:+75395375 | Msa0225260:CDS |
| CCATACAAAGCATTCATGGT+TGG | 0.569961 | 2_1:-75395492 | Msa0225250:intron |
| CTATGAAGAGTCAGAAAAGA+GGG | 0.570873 | 2_1:+75395170 | Msa0225260:CDS |
| ATCTTCTTTATGATATTCAG+TGG | 0.577502 | 2_1:-75395562 | Msa0225250:intron |
| CCTATGAAGAGTCAGAAAAG+AGG | 0.578028 | 2_1:+75395169 | Msa0225260:CDS |
| TCTTTATGATATTCAGTGGG+AGG | 0.578179 | 2_1:-75395558 | Msa0225250:intron |
| TGGCAGAAGAGAGATAGAAG+AGG | 0.582371 | 2_1:+75395615 | Msa0225260:CDS |
| AAGCGATGAAGATGATGCTA+AGG | 0.582770 | 2_1:+75395218 | Msa0225260:CDS |
| GGGAATGGCAAGAATGAGCT+GGG | 0.589572 | 2_1:+75395726 | Msa0225260:CDS |
| TGAAGATGATGCTAAGGATG+AGG | 0.590398 | 2_1:+75395224 | Msa0225260:CDS |
| ACTACCTTGTATTGAGAGAG+GGG | 0.593179 | 2_1:-75394839 | Msa0225250:intron |
| GTGTTGGTGAAACATCAAAT+GGG | 0.595282 | 2_1:+75395706 | Msa0225260:CDS |
| TAACTACCTTGTATTGAGAG+AGG | 0.601425 | 2_1:-75394841 | Msa0225250:intron |
| TCTTCTTTATGATATTCAGT+GGG | 0.603725 | 2_1:-75395561 | Msa0225250:intron |
| TAGTGATGAAGATGATGCTA+AGG | 0.613974 | 2_1:+75394678 | Msa0225260:CDS |
| AGCAATGGAAAAGCATTGGG+TGG | 0.615604 | 2_1:+75394757 | Msa0225260:CDS |
| AAGTGATGAAGATGATGCTA+AGG | 0.616457 | 2_1:+75394960 | Msa0225260:CDS |
| ATGGATAAAGATCATAAGCA+TGG | 0.623190 | 2_1:+75394595 | Msa0225260:CDS |
| ATGGTCACATGAGGACTCAC+CGG | 0.623316 | 2_1:+75395511 | Msa0225260:CDS |
| AGCAACGGAAAAGCATTGGG+TGG | 0.623901 | 2_1:+75395039 | Msa0225260:CDS |
| AGATCATAAGCATGATCATG+AGG | 0.630396 | 2_1:+75395143 | Msa0225260:CDS |
| GGTGAAACATCAAATGGGAA+TGG | 0.636070 | 2_1:+75395711 | Msa0225260:CDS |
| TGAAGATGATGCTAAGGATG+AGG | 0.644459 | 2_1:+75394684 | Msa0225260:CDS |
| AGTAACGGAAAAGCATTGGG+TGG | 0.649033 | 2_1:+75395297 | Msa0225260:CDS |
| GTGTATTGGTAGTGTTGAGG+CGG | 0.666307 | 2_1:+75395644 | Msa0225260:CDS |
| AAAAGTTCTTGTCATAACGA+AGG | 0.694153 | 2_1:-75395683 | Msa0225250:intron |
| AAAGTGTATTGGTAGTGTTG+AGG | 0.694754 | 2_1:+75395641 | Msa0225260:CDS |
| ATGCTTTGTATGGTCACATG+AGG | 0.725028 | 2_1:+75395502 | Msa0225260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATACAAGGTAGTTATAATA+GGG | + | chr2_1:75394849-75394868 | Msa0225260:CDS | 20.0% |
| !! | AATACAAGGTAGTAATAATA+GGG | + | chr2_1:75395389-75395408 | Msa0225260:CDS | 20.0% |
| !! | AATACAAGGTAGTTATAATA+GGG | + | chr2_1:75394849-75394868 | Msa0225260:CDS | 20.0% |
| !! | AATACAAGGTAGTAATAATA+GGG | + | chr2_1:75395389-75395408 | Msa0225260:CDS | 20.0% |
| ! | CAATACAAGGTAGTTATAAT+AGG | + | chr2_1:75394848-75394867 | Msa0225260:CDS | 25.0% |
| ! | TTTGATAAAGATAGTAAGCA+TGG | + | chr2_1:75394877-75394896 | Msa0225260:CDS | 25.0% |
| !!! | ACAAAAGGTTGATAATACTA+TGG | + | chr2_1:75395107-75395126 | Msa0225260:CDS | 25.0% |
| !! | TGTGGAAAAACTTTTAGTAA+CGG | + | chr2_1:75395282-75395301 | Msa0225260:CDS | 25.0% |
| ! | CAATACAAGGTAGTAATAAT+AGG | + | chr2_1:75395388-75395407 | Msa0225260:CDS | 25.0% |
| ! | TCTTCTTTATGATATTCAGT+GGG | - | chr2_1:75395564-75395583 | Msa0225250:intron | 25.0% |
| ! | ATCTTCTTTATGATATTCAG+TGG | - | chr2_1:75395565-75395584 | Msa0225250:intron | 25.0% |
| !! | AATAAACCTTTTCCTTTCTT+TGG | - | chr2_1:75395780-75395799 | Msa0225250:intron | 25.0% |
| ! | CAATACAAGGTAGTTATAAT+AGG | + | chr2_1:75394848-75394867 | Msa0225260:CDS | 25.0% |
| ! | TTTGATAAAGATAGTAAGCA+TGG | + | chr2_1:75394877-75394896 | Msa0225260:CDS | 25.0% |
| !!! | ACAAAAGGTTGATAATACTA+TGG | + | chr2_1:75395107-75395126 | Msa0225260:CDS | 25.0% |
| !! | TGTGGAAAAACTTTTAGTAA+CGG | + | chr2_1:75395282-75395301 | Msa0225260:CDS | 25.0% |
| ! | CAATACAAGGTAGTAATAAT+AGG | + | chr2_1:75395388-75395407 | Msa0225260:CDS | 25.0% |
| ! | TCTTCTTTATGATATTCAGT+GGG | - | chr2_1:75395564-75395583 | Msa0225250:intron | 25.0% |
| ! | ATCTTCTTTATGATATTCAG+TGG | - | chr2_1:75395565-75395584 | Msa0225250:intron | 25.0% |
| !! | AATAAACCTTTTCCTTTCTT+TGG | - | chr2_1:75395780-75395799 | Msa0225250:intron | 25.0% |
| ATGGATAAAGATCATAAGCA+TGG | + | chr2_1:75394595-75394614 | Msa0225260:CDS | 30.0% | |
| TGAGAAAACCTATGAAGATT+CGG | + | chr2_1:75394621-75394640 | Msa0225260:CDS | 30.0% | |
| !! | TTTTAGCAATGGAAAAGCAT+TGG | + | chr2_1:75394753-75394772 | Msa0225260:CDS | 30.0% |
| !! | TTTAGCAATGGAAAAGCATT+GGG | + | chr2_1:75394754-75394773 | Msa0225260:CDS | 30.0% |
| ACTTAATCATCGTTCACAAA+AGG | + | chr2_1:75394810-75394829 | Msa0225260:CDS | 30.0% | |
| ! | ACACATCAATGCAATTTTTG+TGG | + | chr2_1:75395006-75395025 | Msa0225260:CDS | 30.0% |
| ! | TGTGGAAAAACTTTTAGCAA+CGG | + | chr2_1:75395024-75395043 | Msa0225260:CDS | 30.0% |
| ACTTCATCATGATTCACAAA+AGG | + | chr2_1:75395092-75395111 | Msa0225260:CDS | 30.0% | |
| ! | TGATAATACTATGGCTAGTT+TGG | + | chr2_1:75395116-75395135 | Msa0225260:CDS | 30.0% |
| !! | TTTTAGTAACGGAAAAGCAT+TGG | + | chr2_1:75395293-75395312 | Msa0225260:CDS | 30.0% |
| !! | TTTAGTAACGGAAAAGCATT+GGG | + | chr2_1:75395294-75395313 | Msa0225260:CDS | 30.0% |
| ACTCAATCATCATCAACAAA+AGG | + | chr2_1:75395350-75395369 | Msa0225260:CDS | 30.0% | |
| TACTACCTTGTATTGAGAAA+GGG | - | chr2_1:75395383-75395402 | Msa0225250:intron | 30.0% | |
| TTACTACCTTGTATTGAGAA+AGG | - | chr2_1:75395384-75395403 | Msa0225250:intron | 30.0% | |
| GATGATGAAGAAGAAATTGA+TGG | + | chr2_1:75395429-75395448 | Msa0225260:CDS | 30.0% | |
| !! | GTCCTTTAAAATCTCTATTC+CGG | - | chr2_1:75395533-75395552 | Msa0225250:intron | 30.0% |
| CATAAAGAAGATCAAGATGA+TGG | + | chr2_1:75395573-75395592 | Msa0225260:CDS | 30.0% | |
| GTGATTTATCTTTGCCAAAA+TGG | + | chr2_1:75395595-75395614 | Msa0225260:CDS | 30.0% | |
| AAAAGTTCTTGTCATAACGA+AGG | - | chr2_1:75395686-75395705 | Msa0225250:intron | 30.0% | |
| ! | TATGACAAGAACTTTTGTGT+TGG | + | chr2_1:75395690-75395709 | Msa0225260:CDS | 30.0% |
| ATGGATAAAGATCATAAGCA+TGG | + | chr2_1:75394595-75394614 | Msa0225260:CDS | 30.0% | |
| TGAGAAAACCTATGAAGATT+CGG | + | chr2_1:75394621-75394640 | Msa0225260:CDS | 30.0% | |
| !! | TTTTAGCAATGGAAAAGCAT+TGG | + | chr2_1:75394753-75394772 | Msa0225260:CDS | 30.0% |
| !! | TTTAGCAATGGAAAAGCATT+GGG | + | chr2_1:75394754-75394773 | Msa0225260:CDS | 30.0% |
| ACTTAATCATCGTTCACAAA+AGG | + | chr2_1:75394810-75394829 | Msa0225260:CDS | 30.0% | |
| ! | ACACATCAATGCAATTTTTG+TGG | + | chr2_1:75395006-75395025 | Msa0225260:CDS | 30.0% |
| ! | TGTGGAAAAACTTTTAGCAA+CGG | + | chr2_1:75395024-75395043 | Msa0225260:CDS | 30.0% |
| ACTTCATCATGATTCACAAA+AGG | + | chr2_1:75395092-75395111 | Msa0225260:CDS | 30.0% | |
| ! | TGATAATACTATGGCTAGTT+TGG | + | chr2_1:75395116-75395135 | Msa0225260:CDS | 30.0% |
| !! | TTTTAGTAACGGAAAAGCAT+TGG | + | chr2_1:75395293-75395312 | Msa0225260:CDS | 30.0% |
| !! | TTTAGTAACGGAAAAGCATT+GGG | + | chr2_1:75395294-75395313 | Msa0225260:CDS | 30.0% |
| ACTCAATCATCATCAACAAA+AGG | + | chr2_1:75395350-75395369 | Msa0225260:CDS | 30.0% | |
| TACTACCTTGTATTGAGAAA+GGG | - | chr2_1:75395383-75395402 | Msa0225250:intron | 30.0% | |
| TTACTACCTTGTATTGAGAA+AGG | - | chr2_1:75395384-75395403 | Msa0225250:intron | 30.0% | |
| GATGATGAAGAAGAAATTGA+TGG | + | chr2_1:75395429-75395448 | Msa0225260:CDS | 30.0% | |
| !! | GTCCTTTAAAATCTCTATTC+CGG | - | chr2_1:75395533-75395552 | Msa0225250:intron | 30.0% |
| CATAAAGAAGATCAAGATGA+TGG | + | chr2_1:75395573-75395592 | Msa0225260:CDS | 30.0% | |
| GTGATTTATCTTTGCCAAAA+TGG | + | chr2_1:75395595-75395614 | Msa0225260:CDS | 30.0% | |
| AAAAGTTCTTGTCATAACGA+AGG | - | chr2_1:75395686-75395705 | Msa0225250:intron | 30.0% | |
| ! | TATGACAAGAACTTTTGTGT+TGG | + | chr2_1:75395690-75395709 | Msa0225260:CDS | 30.0% |
| ATTCGGAAAAGAGGATGAAA+AGG | + | chr2_1:75394638-75394657 | Msa0225260:CDS | 35.0% | |
| TAGTGATGAAGATGATGCTA+AGG | + | chr2_1:75394678-75394697 | Msa0225260:CDS | 35.0% | |
| ! | TGTGGGAAAACTTTTAGCAA+TGG | + | chr2_1:75394742-75394761 | Msa0225260:CDS | 35.0% |
| TCTTAAGAAAGTGAGATCTC+CGG | - | chr2_1:75394786-75394805 | Msa0225250:intron | 35.0% | |
| AACTACCTTGTATTGAGAGA+GGG | - | chr2_1:75394843-75394862 | Msa0225250:intron | 35.0% | |
| TAACTACCTTGTATTGAGAG+AGG | - | chr2_1:75394844-75394863 | Msa0225250:intron | 35.0% | |
| AGTCTGAAAAGAGGATAAAG+AGG | + | chr2_1:75394920-75394939 | Msa0225260:CDS | 35.0% | |
| AAGTGATGAAGATGATGCTA+AGG | + | chr2_1:75394960-75394979 | Msa0225260:CDS | 35.0% | |
| !! | TTTTAGCAACGGAAAAGCAT+TGG | + | chr2_1:75395035-75395054 | Msa0225260:CDS | 35.0% |
| !! | TTTAGCAACGGAAAAGCATT+GGG | + | chr2_1:75395036-75395055 | Msa0225260:CDS | 35.0% |
| CATGATGAAGTTTCTGCTTA+AGG | - | chr2_1:75395083-75395102 | Msa0225250:intron | 35.0% | |
| AGATCATAAGCATGATCATG+AGG | + | chr2_1:75395143-75395162 | Msa0225260:CDS | 35.0% | |
| CTATGAAGAGTCAGAAAAGA+GGG | + | chr2_1:75395170-75395189 | Msa0225260:CDS | 35.0% | |
| TCTTAAGAAAGTGAGATCTC+CGG | - | chr2_1:75394786-75394805 | Msa0225250:intron | 35.0% | |
| AAAACCCCTTTCTCAATACA+AGG | + | chr2_1:75395375-75395394 | Msa0225260:CDS | 35.0% | |
| ACTACCTTGTATTGAGAAAG+GGG | - | chr2_1:75395382-75395401 | Msa0225250:intron | 35.0% | |
| ! | TTTTTGCAGAGAGAACAAGT+TGG | - | chr2_1:75395465-75395484 | Msa0225250:intron | 35.0% |
| ! | CACCGGAATAGAGATTTTAA+AGG | + | chr2_1:75395528-75395547 | Msa0225260:CDS | 35.0% |
| TCTTTATGATATTCAGTGGG+AGG | - | chr2_1:75395561-75395580 | Msa0225250:intron | 35.0% | |
| ! | AGAAGAGGTAGAAAGTGTAT+TGG | + | chr2_1:75395630-75395649 | Msa0225260:CDS | 35.0% |
| !! | AAAGTGTATTGGTAGTGTTG+AGG | + | chr2_1:75395641-75395660 | Msa0225260:CDS | 35.0% |
| ! | TGTGTTGGTGAAACATCAAA+TGG | + | chr2_1:75395705-75395724 | Msa0225260:CDS | 35.0% |
| ! | GTGTTGGTGAAACATCAAAT+GGG | + | chr2_1:75395706-75395725 | Msa0225260:CDS | 35.0% |
| GAATGAGTCGTATGTTATAG+AGG | + | chr2_1:75395806-75395825 | Msa0225260:CDS | 35.0% | |
| ATTCGGAAAAGAGGATGAAA+AGG | + | chr2_1:75394638-75394657 | Msa0225260:CDS | 35.0% | |
| TAGTGATGAAGATGATGCTA+AGG | + | chr2_1:75394678-75394697 | Msa0225260:CDS | 35.0% | |
| ! | TGTGGGAAAACTTTTAGCAA+TGG | + | chr2_1:75394742-75394761 | Msa0225260:CDS | 35.0% |
| TCTTAAGAAAGTGAGATCTC+CGG | - | chr2_1:75394786-75394805 | Msa0225250:intron | 35.0% | |
| AACTACCTTGTATTGAGAGA+GGG | - | chr2_1:75394843-75394862 | Msa0225250:intron | 35.0% | |
| TAACTACCTTGTATTGAGAG+AGG | - | chr2_1:75394844-75394863 | Msa0225250:intron | 35.0% | |
| AGTCTGAAAAGAGGATAAAG+AGG | + | chr2_1:75394920-75394939 | Msa0225260:CDS | 35.0% | |
| AAGTGATGAAGATGATGCTA+AGG | + | chr2_1:75394960-75394979 | Msa0225260:CDS | 35.0% | |
| !! | TTTTAGCAACGGAAAAGCAT+TGG | + | chr2_1:75395035-75395054 | Msa0225260:CDS | 35.0% |
| !! | TTTAGCAACGGAAAAGCATT+GGG | + | chr2_1:75395036-75395055 | Msa0225260:CDS | 35.0% |
| CATGATGAAGTTTCTGCTTA+AGG | - | chr2_1:75395083-75395102 | Msa0225250:intron | 35.0% | |
| AGATCATAAGCATGATCATG+AGG | + | chr2_1:75395143-75395162 | Msa0225260:CDS | 35.0% | |
| CTATGAAGAGTCAGAAAAGA+GGG | + | chr2_1:75395170-75395189 | Msa0225260:CDS | 35.0% | |
| TCTTAAGAAAGTGAGATCTC+CGG | - | chr2_1:75394786-75394805 | Msa0225250:intron | 35.0% | |
| AAAACCCCTTTCTCAATACA+AGG | + | chr2_1:75395375-75395394 | Msa0225260:CDS | 35.0% | |
| ACTACCTTGTATTGAGAAAG+GGG | - | chr2_1:75395382-75395401 | Msa0225250:intron | 35.0% | |
| ! | TTTTTGCAGAGAGAACAAGT+TGG | - | chr2_1:75395465-75395484 | Msa0225250:intron | 35.0% |
| ! | CACCGGAATAGAGATTTTAA+AGG | + | chr2_1:75395528-75395547 | Msa0225260:CDS | 35.0% |
| TCTTTATGATATTCAGTGGG+AGG | - | chr2_1:75395561-75395580 | Msa0225250:intron | 35.0% | |
| ! | AGAAGAGGTAGAAAGTGTAT+TGG | + | chr2_1:75395630-75395649 | Msa0225260:CDS | 35.0% |
| !! | AAAGTGTATTGGTAGTGTTG+AGG | + | chr2_1:75395641-75395660 | Msa0225260:CDS | 35.0% |
| ! | TGTGTTGGTGAAACATCAAA+TGG | + | chr2_1:75395705-75395724 | Msa0225260:CDS | 35.0% |
| ! | GTGTTGGTGAAACATCAAAT+GGG | + | chr2_1:75395706-75395725 | Msa0225260:CDS | 35.0% |
| GAATGAGTCGTATGTTATAG+AGG | + | chr2_1:75395806-75395825 | Msa0225260:CDS | 35.0% | |
| ! | CCTCTTTTCCGAATCTTCAT+AGG | - | chr2_1:75394632-75394651 | Msa0225250:intron | 40.0% |
| CCTATGAAGATTCGGAAAAG+AGG | + | chr2_1:75394629-75394648 | Msa0225260:CDS | 40.0% | |
| TGAAGATGATGCTAAGGATG+AGG | + | chr2_1:75394684-75394703 | Msa0225260:CDS | 40.0% | |
| TCACATCAGTGCAATGTTTG+TGG | + | chr2_1:75394724-75394743 | Msa0225260:CDS | 40.0% | |
| CACATCAGTGCAATGTTTGT+GGG | + | chr2_1:75394725-75394744 | Msa0225260:CDS | 40.0% | |
| ACTACCTTGTATTGAGAGAG+GGG | - | chr2_1:75394842-75394861 | Msa0225250:intron | 40.0% | |
| ! | TCCTCTTTTCAGACTCTTCA+CGG | - | chr2_1:75394915-75394934 | Msa0225250:intron | 40.0% |
| GCTTAAGGAAGTGAGATCTT+CGG | - | chr2_1:75395068-75395087 | Msa0225250:intron | 40.0% | |
| ! | CCTCTTTTCTGACTCTTCAT+AGG | - | chr2_1:75395172-75395191 | Msa0225250:intron | 40.0% |
| CCTATGAAGAGTCAGAAAAG+AGG | + | chr2_1:75395169-75395188 | Msa0225260:CDS | 40.0% | |
| AGTCAGAAAAGAGGGTGAAA+AGG | + | chr2_1:75395178-75395197 | Msa0225260:CDS | 40.0% | |
| AAGCGATGAAGATGATGCTA+AGG | + | chr2_1:75395218-75395237 | Msa0225260:CDS | 40.0% | |
| TGAAGATGATGCTAAGGATG+AGG | + | chr2_1:75394684-75394703 | Msa0225260:CDS | 40.0% | |
| ACACATCAGTGCAATGTTTG+TGG | + | chr2_1:75395264-75395283 | Msa0225260:CDS | 40.0% | |
| ! | CCATACAAAGCATTCATGGT+TGG | - | chr2_1:75395495-75395514 | Msa0225250:intron | 40.0% |
| CCAACCATGAATGCTTTGTA+TGG | + | chr2_1:75395492-75395511 | Msa0225260:CDS | 40.0% | |
| ! | GTGACCATACAAAGCATTCA+TGG | - | chr2_1:75395499-75395518 | Msa0225250:intron | 40.0% |
| ATGCTTTGTATGGTCACATG+AGG | + | chr2_1:75395502-75395521 | Msa0225260:CDS | 40.0% | |
| !! | CTATCTCTCTTCTGCCATTT+TGG | - | chr2_1:75395612-75395631 | Msa0225250:intron | 40.0% |
| GGTGAAACATCAAATGGGAA+TGG | + | chr2_1:75395711-75395730 | Msa0225260:CDS | 40.0% | |
| AGTGATAAGCAGCCAAAGAA+AGG | + | chr2_1:75395765-75395784 | Msa0225260:CDS | 40.0% | |
| AAGCAGCCAAAGAAAGGAAA+AGG | + | chr2_1:75395771-75395790 | Msa0225260:CDS | 40.0% | |
| ! | CCTCTTTTCCGAATCTTCAT+AGG | - | chr2_1:75394632-75394651 | Msa0225250:intron | 40.0% |
| CCTATGAAGATTCGGAAAAG+AGG | + | chr2_1:75394629-75394648 | Msa0225260:CDS | 40.0% | |
| TGAAGATGATGCTAAGGATG+AGG | + | chr2_1:75394684-75394703 | Msa0225260:CDS | 40.0% | |
| TCACATCAGTGCAATGTTTG+TGG | + | chr2_1:75394724-75394743 | Msa0225260:CDS | 40.0% | |
| CACATCAGTGCAATGTTTGT+GGG | + | chr2_1:75394725-75394744 | Msa0225260:CDS | 40.0% | |
| ACTACCTTGTATTGAGAGAG+GGG | - | chr2_1:75394842-75394861 | Msa0225250:intron | 40.0% | |
| ! | TCCTCTTTTCAGACTCTTCA+CGG | - | chr2_1:75394915-75394934 | Msa0225250:intron | 40.0% |
| GCTTAAGGAAGTGAGATCTT+CGG | - | chr2_1:75395068-75395087 | Msa0225250:intron | 40.0% | |
| ! | CCTCTTTTCTGACTCTTCAT+AGG | - | chr2_1:75395172-75395191 | Msa0225250:intron | 40.0% |
| CCTATGAAGAGTCAGAAAAG+AGG | + | chr2_1:75395169-75395188 | Msa0225260:CDS | 40.0% | |
| AGTCAGAAAAGAGGGTGAAA+AGG | + | chr2_1:75395178-75395197 | Msa0225260:CDS | 40.0% | |
| AAGCGATGAAGATGATGCTA+AGG | + | chr2_1:75395218-75395237 | Msa0225260:CDS | 40.0% | |
| TGAAGATGATGCTAAGGATG+AGG | + | chr2_1:75394684-75394703 | Msa0225260:CDS | 40.0% | |
| ACACATCAGTGCAATGTTTG+TGG | + | chr2_1:75395264-75395283 | Msa0225260:CDS | 40.0% | |
| ! | CCATACAAAGCATTCATGGT+TGG | - | chr2_1:75395495-75395514 | Msa0225250:intron | 40.0% |
| CCAACCATGAATGCTTTGTA+TGG | + | chr2_1:75395492-75395511 | Msa0225260:CDS | 40.0% | |
| ! | GTGACCATACAAAGCATTCA+TGG | - | chr2_1:75395499-75395518 | Msa0225250:intron | 40.0% |
| ATGCTTTGTATGGTCACATG+AGG | + | chr2_1:75395502-75395521 | Msa0225260:CDS | 40.0% | |
| !! | CTATCTCTCTTCTGCCATTT+TGG | - | chr2_1:75395612-75395631 | Msa0225250:intron | 40.0% |
| GGTGAAACATCAAATGGGAA+TGG | + | chr2_1:75395711-75395730 | Msa0225260:CDS | 40.0% | |
| AGTGATAAGCAGCCAAAGAA+AGG | + | chr2_1:75395765-75395784 | Msa0225260:CDS | 40.0% | |
| AAGCAGCCAAAGAAAGGAAA+AGG | + | chr2_1:75395771-75395790 | Msa0225260:CDS | 40.0% | |
| !! | AGCAATGGAAAAGCATTGGG+TGG | + | chr2_1:75394757-75394776 | Msa0225260:CDS | 45.0% |
| CAAACCCCTCTCTCAATACA+AGG | + | chr2_1:75394835-75394854 | Msa0225260:CDS | 45.0% | |
| ! | CCTCTTTTCAGACTCTTCAC+GGG | - | chr2_1:75394914-75394933 | Msa0225250:intron | 45.0% |
| !! | AGTAACGGAAAAGCATTGGG+TGG | + | chr2_1:75395297-75395316 | Msa0225260:CDS | 45.0% |
| TGGCAGAAGAGAGATAGAAG+AGG | + | chr2_1:75395615-75395634 | Msa0225260:CDS | 45.0% | |
| !! | GTGTATTGGTAGTGTTGAGG+CGG | + | chr2_1:75395644-75395663 | Msa0225260:CDS | 45.0% |
| !! | AGCAATGGAAAAGCATTGGG+TGG | + | chr2_1:75394757-75394776 | Msa0225260:CDS | 45.0% |
| CAAACCCCTCTCTCAATACA+AGG | + | chr2_1:75394835-75394854 | Msa0225260:CDS | 45.0% | |
| ! | CCTCTTTTCAGACTCTTCAC+GGG | - | chr2_1:75394914-75394933 | Msa0225250:intron | 45.0% |
| !! | AGTAACGGAAAAGCATTGGG+TGG | + | chr2_1:75395297-75395316 | Msa0225260:CDS | 45.0% |
| TGGCAGAAGAGAGATAGAAG+AGG | + | chr2_1:75395615-75395634 | Msa0225260:CDS | 45.0% | |
| !! | GTGTATTGGTAGTGTTGAGG+CGG | + | chr2_1:75395644-75395663 | Msa0225260:CDS | 45.0% |
| !! | GAAAAGCATTGGGTGGTCAC+CGG | + | chr2_1:75394764-75394783 | Msa0225260:CDS | 50.0% |
| CCCGTGAAGAGTCTGAAAAG+AGG | + | chr2_1:75394911-75394930 | Msa0225260:CDS | 50.0% | |
| !! | AGCAACGGAAAAGCATTGGG+TGG | + | chr2_1:75395039-75395058 | Msa0225260:CDS | 50.0% |
| !! | GAAAAGCATTGGGTGGTCAC+CGG | + | chr2_1:75394764-75394783 | Msa0225260:CDS | 50.0% |
| ATGGTCACATGAGGACTCAC+CGG | + | chr2_1:75395511-75395530 | Msa0225260:CDS | 50.0% | |
| TGGGAATGGCAAGAATGAGC+TGG | + | chr2_1:75395725-75395744 | Msa0225260:CDS | 50.0% | |
| GGGAATGGCAAGAATGAGCT+GGG | + | chr2_1:75395726-75395745 | Msa0225260:CDS | 50.0% | |
| !! | GAAAAGCATTGGGTGGTCAC+CGG | + | chr2_1:75394764-75394783 | Msa0225260:CDS | 50.0% |
| CCCGTGAAGAGTCTGAAAAG+AGG | + | chr2_1:75394911-75394930 | Msa0225260:CDS | 50.0% | |
| !! | AGCAACGGAAAAGCATTGGG+TGG | + | chr2_1:75395039-75395058 | Msa0225260:CDS | 50.0% |
| !! | GAAAAGCATTGGGTGGTCAC+CGG | + | chr2_1:75394764-75394783 | Msa0225260:CDS | 50.0% |
| ATGGTCACATGAGGACTCAC+CGG | + | chr2_1:75395511-75395530 | Msa0225260:CDS | 50.0% | |
| TGGGAATGGCAAGAATGAGC+TGG | + | chr2_1:75395725-75395744 | Msa0225260:CDS | 50.0% | |
| GGGAATGGCAAGAATGAGCT+GGG | + | chr2_1:75395726-75395745 | Msa0225260:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 75394595 | 75395833 | 75394595 | ID=Msa0225260;Name=Msa0225260 |
| chr2_1 | mRNA | 75394595 | 75395833 | 75394595 | ID=Msa0225260-mRNA-1;Parent=Msa0225260;Name=Msa0225260-mRNA-1;_AED=0.13;_eAED=0.16;_QI=0|-1|0|1|-1|1|1|0|412 |
| chr2_1 | exon | 75394595 | 75395833 | 75394595 | ID=Msa0225260-mRNA-1:exon:22550;Parent=Msa0225260-mRNA-1 |
| chr2_1 | CDS | 75394595 | 75395833 | 75394595 | ID=Msa0225260-mRNA-1:cds;Parent=Msa0225260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
