Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0226570 | XP_003597853.1 | 85.635 | 181 | 23 | 2 | 1 | 178 | 1 | 181 | 6.75e-106 | 311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0226570 | G7IUS5 | 85.635 | 181 | 23 | 2 | 1 | 178 | 1 | 181 | 3.22e-106 | 311 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0226570 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0226570 | MtrunA17_Chr2g0332631 | 85.859 | 99 | 11 | 1 | 1 | 96 | 1 | 99 | 4.49e-51 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGAGTCTTAATCCTCATA+TGG | 0.366307 | 2_1:+77099181 | None:intergenic |
| TCTGCTGCTGCTACAACTAA+TGG | 0.397952 | 2_1:-77097794 | Msa0226570:CDS |
| CATTGTGTTTCTGTCAGATA+AGG | 0.400716 | 2_1:+77097646 | None:intergenic |
| GCCATGTGCATAGTTGCATT+GGG | 0.419796 | 2_1:+77099116 | None:intergenic |
| TCATTCGTCTCTATGCTGAT+TGG | 0.440080 | 2_1:-77097616 | Msa0226570:CDS |
| AACGACCTCAGAACAGCAAC+AGG | 0.451715 | 2_1:-77099090 | Msa0226570:CDS |
| AAAATTCACAAACCCATATG+AGG | 0.470113 | 2_1:-77099194 | Msa0226570:CDS |
| ACTACCTCTTTACATAAGAA+TGG | 0.478765 | 2_1:-77097686 | Msa0226570:CDS |
| ATGAACATTCTACAGAATCT+TGG | 0.480970 | 2_1:+77099066 | None:intergenic |
| AGCCATGTGCATAGTTGCAT+TGG | 0.488645 | 2_1:+77099115 | None:intergenic |
| CTGAGTCTTAATCCTCATAT+GGG | 0.496970 | 2_1:+77099182 | None:intergenic |
| CATAAGAATGGACCGTATGC+TGG | 0.500563 | 2_1:-77097674 | Msa0226570:CDS |
| CGGTCCATTCTTATGTAAAG+AGG | 0.523765 | 2_1:+77097682 | None:intergenic |
| TTGTCATGCTGCTGCTGCTG+AGG | 0.546274 | 2_1:+77098964 | None:intergenic |
| TGATACAAAATGCAGAATGC+AGG | 0.549025 | 2_1:-77097829 | Msa0226570:CDS |
| TTGGTCCTGTTGCTGTTCTG+AGG | 0.555812 | 2_1:+77099085 | None:intergenic |
| ATGGCTGAGGTATTTGTAGC+AGG | 0.556435 | 2_1:+77097719 | None:intergenic |
| CCCCAATGCAACTATGCACA+TGG | 0.558064 | 2_1:-77099117 | Msa0226570:CDS |
| GTGTCCGTAGCTACAATGTC+TGG | 0.558270 | 2_1:+77099038 | None:intergenic |
| CACACCAGACATTGTAGCTA+CGG | 0.572650 | 2_1:-77099042 | Msa0226570:CDS |
| TTGCATTGGGGTGCAACAAG+AGG | 0.590171 | 2_1:+77099129 | None:intergenic |
| TGAACATAATGACTAGGTAG+AGG | 0.590759 | 2_1:+77098988 | None:intergenic |
| GATAAGGATTTACCAGCATA+CGG | 0.594337 | 2_1:+77097662 | None:intergenic |
| GTAGAGGAGGAGTTGCATGA+AGG | 0.626678 | 2_1:+77099004 | None:intergenic |
| TGAGGATGAACATAATGACT+AGG | 0.628974 | 2_1:+77098982 | None:intergenic |
| ACATAATGACTAGGTAGAGG+AGG | 0.645792 | 2_1:+77098991 | None:intergenic |
| CTGACAGAAACACAATGCAA+AGG | 0.652310 | 2_1:-77097640 | Msa0226570:CDS |
| AGTTGCCACTGTGATGGCTG+AGG | 0.653448 | 2_1:+77097706 | None:intergenic |
| CCATGTGCATAGTTGCATTG+GGG | 0.656451 | 2_1:+77099117 | None:intergenic |
| AGAGGTAGTTGCCACTGTGA+TGG | 0.670611 | 2_1:+77097700 | None:intergenic |
| CTATGCAAAAGATTCATGCA+AGG | 0.677580 | 2_1:-77099159 | Msa0226570:CDS |
| AGTTTGTGAATGCAGAACCA+GGG | 0.757579 | 2_1:-77097853 | Msa0226570:intron |
| AAATACCTCAGCCATCACAG+TGG | 0.797236 | 2_1:-77097711 | Msa0226570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTAAACATTATTACT+TGG | - | chr2_1:77098189-77098208 | Msa0226570:intron | 10.0% |
| !!! | TTTTTTTAAACATTATTACT+TGG | - | chr2_1:77098189-77098208 | Msa0226570:intron | 10.0% |
| !! | TTAATTAATAAGTAATGTCT+CGG | - | chr2_1:77098344-77098363 | Msa0226570:intron | 15.0% |
| !! | AATAAGCTAAAAACAATTTA+TGG | + | chr2_1:77098694-77098713 | None:intergenic | 15.0% |
| !! | TTAATTAATAAGTAATGTCT+CGG | - | chr2_1:77098344-77098363 | Msa0226570:intron | 15.0% |
| !! | AATAAGCTAAAAACAATTTA+TGG | + | chr2_1:77098694-77098713 | None:intergenic | 15.0% |
| !! | TTCTTAGTATTAGAACAAAA+AGG | - | chr2_1:77097959-77097978 | Msa0226570:intron | 20.0% |
| !! | TCTTAGTATTAGAACAAAAA+GGG | - | chr2_1:77097960-77097979 | Msa0226570:intron | 20.0% |
| !!! | TTTATAGGTTTTATGTAATC+TGG | - | chr2_1:77098105-77098124 | Msa0226570:intron | 20.0% |
| !! | ACATAAACACTTATATGATA+TGG | - | chr2_1:77098809-77098828 | Msa0226570:intron | 20.0% |
| !! | TTCTTAGTATTAGAACAAAA+AGG | - | chr2_1:77097959-77097978 | Msa0226570:intron | 20.0% |
| !! | TCTTAGTATTAGAACAAAAA+GGG | - | chr2_1:77097960-77097979 | Msa0226570:intron | 20.0% |
| !!! | TTTATAGGTTTTATGTAATC+TGG | - | chr2_1:77098105-77098124 | Msa0226570:intron | 20.0% |
| !! | ACATAAACACTTATATGATA+TGG | - | chr2_1:77098809-77098828 | Msa0226570:intron | 20.0% |
| ! | AAACAACAAACACATAATGT+TGG | - | chr2_1:77098297-77098316 | Msa0226570:intron | 25.0% |
| ! | TAATTAAGCAACCTCATAAT+CGG | + | chr2_1:77098331-77098350 | None:intergenic | 25.0% |
| ! | ATAAATGGAAAAATGTGCAT+CGG | - | chr2_1:77098378-77098397 | Msa0226570:intron | 25.0% |
| ! | AGTAGAAAATTGTCAAATAG+TGG | + | chr2_1:77098584-77098603 | None:intergenic | 25.0% |
| !! | CAATTTTCTACTAAATATCG+TGG | - | chr2_1:77098592-77098611 | Msa0226570:intron | 25.0% |
| ! | AATAGAATATAGAACTGTGT+TGG | - | chr2_1:77098922-77098941 | Msa0226570:intron | 25.0% |
| ! | AAACAACAAACACATAATGT+TGG | - | chr2_1:77098297-77098316 | Msa0226570:intron | 25.0% |
| ! | TAATTAAGCAACCTCATAAT+CGG | + | chr2_1:77098331-77098350 | None:intergenic | 25.0% |
| ! | ATAAATGGAAAAATGTGCAT+CGG | - | chr2_1:77098378-77098397 | Msa0226570:intron | 25.0% |
| ! | AGTAGAAAATTGTCAAATAG+TGG | + | chr2_1:77098584-77098603 | None:intergenic | 25.0% |
| !! | CAATTTTCTACTAAATATCG+TGG | - | chr2_1:77098592-77098611 | Msa0226570:intron | 25.0% |
| ! | AATAGAATATAGAACTGTGT+TGG | - | chr2_1:77098922-77098941 | Msa0226570:intron | 25.0% |
| ! | CATATGGGTTTGTGAATTTT+CGG | + | chr2_1:77097626-77097645 | None:intergenic | 30.0% |
| AAAATTCACAAACCCATATG+AGG | - | chr2_1:77097626-77097645 | Msa0226570:CDS | 30.0% | |
| ATGAACATTCTACAGAATCT+TGG | + | chr2_1:77097757-77097776 | None:intergenic | 30.0% | |
| AGAAGTTGAAGAAAAATACG+TGG | + | chr2_1:77097895-77097914 | None:intergenic | 30.0% | |
| !! | ACTACACTAACACTACTTTT+TGG | - | chr2_1:77097922-77097941 | Msa0226570:intron | 30.0% |
| ! | ACACTTTTGATCAAATGTGT+CGG | + | chr2_1:77098003-77098022 | None:intergenic | 30.0% |
| ! | GACTTCAGTTTATCTTTTGT+TGG | - | chr2_1:77098773-77098792 | Msa0226570:intron | 30.0% |
| AATTAAGCTGTTTACCAAAC+AGG | - | chr2_1:77098851-77098870 | Msa0226570:intron | 30.0% | |
| AGCTTTCATGGAAATCATAT+TGG | + | chr2_1:77098891-77098910 | None:intergenic | 30.0% | |
| TGAATCACAAAAAGCTTTCA+TGG | + | chr2_1:77098903-77098922 | None:intergenic | 30.0% | |
| ACTACCTCTTTACATAAGAA+TGG | - | chr2_1:77099134-77099153 | Msa0226570:CDS | 30.0% | |
| ! | CATATGGGTTTGTGAATTTT+CGG | + | chr2_1:77097626-77097645 | None:intergenic | 30.0% |
| AAAATTCACAAACCCATATG+AGG | - | chr2_1:77097626-77097645 | Msa0226570:CDS | 30.0% | |
| ATGAACATTCTACAGAATCT+TGG | + | chr2_1:77097757-77097776 | None:intergenic | 30.0% | |
| AGAAGTTGAAGAAAAATACG+TGG | + | chr2_1:77097895-77097914 | None:intergenic | 30.0% | |
| !! | ACTACACTAACACTACTTTT+TGG | - | chr2_1:77097922-77097941 | Msa0226570:intron | 30.0% |
| ! | ACACTTTTGATCAAATGTGT+CGG | + | chr2_1:77098003-77098022 | None:intergenic | 30.0% |
| ! | GACTTCAGTTTATCTTTTGT+TGG | - | chr2_1:77098773-77098792 | Msa0226570:intron | 30.0% |
| AATTAAGCTGTTTACCAAAC+AGG | - | chr2_1:77098851-77098870 | Msa0226570:intron | 30.0% | |
| AGCTTTCATGGAAATCATAT+TGG | + | chr2_1:77098891-77098910 | None:intergenic | 30.0% | |
| TGAATCACAAAAAGCTTTCA+TGG | + | chr2_1:77098903-77098922 | None:intergenic | 30.0% | |
| ACTACCTCTTTACATAAGAA+TGG | - | chr2_1:77099134-77099153 | Msa0226570:CDS | 30.0% | |
| CTGAGTCTTAATCCTCATAT+GGG | + | chr2_1:77097641-77097660 | None:intergenic | 35.0% | |
| CTATGCAAAAGATTCATGCA+AGG | - | chr2_1:77097661-77097680 | Msa0226570:CDS | 35.0% | |
| TGAACATAATGACTAGGTAG+AGG | + | chr2_1:77097835-77097854 | None:intergenic | 35.0% | |
| TGAGGATGAACATAATGACT+AGG | + | chr2_1:77097841-77097860 | None:intergenic | 35.0% | |
| TGAAGAAAAATACGTGGTTG+TGG | + | chr2_1:77097889-77097908 | None:intergenic | 35.0% | |
| ! | TGTTTGTGTTGGTGCTTTAT+AGG | - | chr2_1:77098090-77098109 | Msa0226570:intron | 35.0% |
| !! | CAAACACATAATGTTGGTTC+TGG | - | chr2_1:77098303-77098322 | Msa0226570:intron | 35.0% |
| ! | TCGGATTCGAGTCTTATAAA+TGG | - | chr2_1:77098363-77098382 | Msa0226570:intron | 35.0% |
| AAATAGACCCTAACTCATAG+GGG | + | chr2_1:77098414-77098433 | None:intergenic | 35.0% | |
| CAAATAGACCCTAACTCATA+GGG | + | chr2_1:77098415-77098434 | None:intergenic | 35.0% | |
| TCAAATAGACCCTAACTCAT+AGG | + | chr2_1:77098416-77098435 | None:intergenic | 35.0% | |
| ! | ATGCTCTCAATTTTGAATCG+CGG | - | chr2_1:77098512-77098531 | Msa0226570:intron | 35.0% |
| ! | CAATTTTGAATCGCGGAAAT+TGG | - | chr2_1:77098519-77098538 | Msa0226570:intron | 35.0% |
| GCTGTTTGTATAAGCTATCA+TGG | + | chr2_1:77098729-77098748 | None:intergenic | 35.0% | |
| ATCATATTGGACCTGGAATA+AGG | + | chr2_1:77098878-77098897 | None:intergenic | 35.0% | |
| TGATACAAAATGCAGAATGC+AGG | - | chr2_1:77098991-77099010 | Msa0226570:CDS | 35.0% | |
| GATAAGGATTTACCAGCATA+CGG | + | chr2_1:77099161-77099180 | None:intergenic | 35.0% | |
| ! | CATTGTGTTTCTGTCAGATA+AGG | + | chr2_1:77099177-77099196 | None:intergenic | 35.0% |
| CTGAGTCTTAATCCTCATAT+GGG | + | chr2_1:77097641-77097660 | None:intergenic | 35.0% | |
| CTATGCAAAAGATTCATGCA+AGG | - | chr2_1:77097661-77097680 | Msa0226570:CDS | 35.0% | |
| TGAACATAATGACTAGGTAG+AGG | + | chr2_1:77097835-77097854 | None:intergenic | 35.0% | |
| TGAGGATGAACATAATGACT+AGG | + | chr2_1:77097841-77097860 | None:intergenic | 35.0% | |
| TGAAGAAAAATACGTGGTTG+TGG | + | chr2_1:77097889-77097908 | None:intergenic | 35.0% | |
| ! | TGTTTGTGTTGGTGCTTTAT+AGG | - | chr2_1:77098090-77098109 | Msa0226570:intron | 35.0% |
| !! | CAAACACATAATGTTGGTTC+TGG | - | chr2_1:77098303-77098322 | Msa0226570:intron | 35.0% |
| ! | TCGGATTCGAGTCTTATAAA+TGG | - | chr2_1:77098363-77098382 | Msa0226570:intron | 35.0% |
| AAATAGACCCTAACTCATAG+GGG | + | chr2_1:77098414-77098433 | None:intergenic | 35.0% | |
| CAAATAGACCCTAACTCATA+GGG | + | chr2_1:77098415-77098434 | None:intergenic | 35.0% | |
| TCAAATAGACCCTAACTCAT+AGG | + | chr2_1:77098416-77098435 | None:intergenic | 35.0% | |
| ! | ATGCTCTCAATTTTGAATCG+CGG | - | chr2_1:77098512-77098531 | Msa0226570:intron | 35.0% |
| ! | CAATTTTGAATCGCGGAAAT+TGG | - | chr2_1:77098519-77098538 | Msa0226570:intron | 35.0% |
| GCTGTTTGTATAAGCTATCA+TGG | + | chr2_1:77098729-77098748 | None:intergenic | 35.0% | |
| ATCATATTGGACCTGGAATA+AGG | + | chr2_1:77098878-77098897 | None:intergenic | 35.0% | |
| TGATACAAAATGCAGAATGC+AGG | - | chr2_1:77098991-77099010 | Msa0226570:CDS | 35.0% | |
| GATAAGGATTTACCAGCATA+CGG | + | chr2_1:77099161-77099180 | None:intergenic | 35.0% | |
| ! | CATTGTGTTTCTGTCAGATA+AGG | + | chr2_1:77099177-77099196 | None:intergenic | 35.0% |
| GCTGAGTCTTAATCCTCATA+TGG | + | chr2_1:77097642-77097661 | None:intergenic | 40.0% | |
| ACATAATGACTAGGTAGAGG+AGG | + | chr2_1:77097832-77097851 | None:intergenic | 40.0% | |
| CACATTTGTCAGTGTTGTGT+TGG | + | chr2_1:77098043-77098062 | None:intergenic | 40.0% | |
| ! | TAAAGCACCAACACAAACAC+CGG | + | chr2_1:77098089-77098108 | None:intergenic | 40.0% |
| ! | GCAGCTTGCTTAATCAGTTA+TGG | - | chr2_1:77098225-77098244 | Msa0226570:intron | 40.0% |
| GCTTAATCAGTTATGGCATG+TGG | - | chr2_1:77098232-77098251 | Msa0226570:intron | 40.0% | |
| TGTGGTGAATTTAGCTAGGA+TGG | - | chr2_1:77098250-77098269 | Msa0226570:intron | 40.0% | |
| ! | ATGATTTGCCCCTATGAGTT+AGG | - | chr2_1:77098403-77098422 | Msa0226570:intron | 40.0% |
| ! | TGATTTGCCCCTATGAGTTA+GGG | - | chr2_1:77098404-77098423 | Msa0226570:intron | 40.0% |
| ! | TTTTGAATCGCGGAAATTGG+CGG | - | chr2_1:77098522-77098541 | Msa0226570:intron | 40.0% |
| CATGGAAATCATATTGGACC+TGG | + | chr2_1:77098885-77098904 | None:intergenic | 40.0% | |
| AGTTTGTGAATGCAGAACCA+GGG | - | chr2_1:77098967-77098986 | Msa0226570:CDS | 40.0% | |
| ! | TCTGCATTTTGTATCATCCC+TGG | + | chr2_1:77098987-77099006 | None:intergenic | 40.0% |
| !!! | TGTTGTTTTGTGCAGAAGAG+TGG | + | chr2_1:77099052-77099071 | None:intergenic | 40.0% |
| CGGTCCATTCTTATGTAAAG+AGG | + | chr2_1:77099141-77099160 | None:intergenic | 40.0% | |
| CTGACAGAAACACAATGCAA+AGG | - | chr2_1:77099180-77099199 | Msa0226570:CDS | 40.0% | |
| TCATTCGTCTCTATGCTGAT+TGG | - | chr2_1:77099204-77099223 | Msa0226570:CDS | 40.0% | |
| GCTGAGTCTTAATCCTCATA+TGG | + | chr2_1:77097642-77097661 | None:intergenic | 40.0% | |
| ACATAATGACTAGGTAGAGG+AGG | + | chr2_1:77097832-77097851 | None:intergenic | 40.0% | |
| CACATTTGTCAGTGTTGTGT+TGG | + | chr2_1:77098043-77098062 | None:intergenic | 40.0% | |
| ! | TAAAGCACCAACACAAACAC+CGG | + | chr2_1:77098089-77098108 | None:intergenic | 40.0% |
| ! | GCAGCTTGCTTAATCAGTTA+TGG | - | chr2_1:77098225-77098244 | Msa0226570:intron | 40.0% |
| GCTTAATCAGTTATGGCATG+TGG | - | chr2_1:77098232-77098251 | Msa0226570:intron | 40.0% | |
| TGTGGTGAATTTAGCTAGGA+TGG | - | chr2_1:77098250-77098269 | Msa0226570:intron | 40.0% | |
| ! | ATGATTTGCCCCTATGAGTT+AGG | - | chr2_1:77098403-77098422 | Msa0226570:intron | 40.0% |
| ! | TGATTTGCCCCTATGAGTTA+GGG | - | chr2_1:77098404-77098423 | Msa0226570:intron | 40.0% |
| ! | TTTTGAATCGCGGAAATTGG+CGG | - | chr2_1:77098522-77098541 | Msa0226570:intron | 40.0% |
| CATGGAAATCATATTGGACC+TGG | + | chr2_1:77098885-77098904 | None:intergenic | 40.0% | |
| AGTTTGTGAATGCAGAACCA+GGG | - | chr2_1:77098967-77098986 | Msa0226570:CDS | 40.0% | |
| ! | TCTGCATTTTGTATCATCCC+TGG | + | chr2_1:77098987-77099006 | None:intergenic | 40.0% |
| !!! | TGTTGTTTTGTGCAGAAGAG+TGG | + | chr2_1:77099052-77099071 | None:intergenic | 40.0% |
| CGGTCCATTCTTATGTAAAG+AGG | + | chr2_1:77099141-77099160 | None:intergenic | 40.0% | |
| CTGACAGAAACACAATGCAA+AGG | - | chr2_1:77099180-77099199 | Msa0226570:CDS | 40.0% | |
| TCATTCGTCTCTATGCTGAT+TGG | - | chr2_1:77099204-77099223 | Msa0226570:CDS | 40.0% | |
| CCATGTGCATAGTTGCATTG+GGG | + | chr2_1:77097706-77097725 | None:intergenic | 45.0% | |
| GCCATGTGCATAGTTGCATT+GGG | + | chr2_1:77097707-77097726 | None:intergenic | 45.0% | |
| AGCCATGTGCATAGTTGCAT+TGG | + | chr2_1:77097708-77097727 | None:intergenic | 45.0% | |
| CACACCAGACATTGTAGCTA+CGG | - | chr2_1:77097778-77097797 | Msa0226570:CDS | 45.0% | |
| CATTCGATCAGTGTTGTGTC+CGG | - | chr2_1:77098067-77098086 | Msa0226570:intron | 45.0% | |
| GGCATGTGGTGAATTTAGCT+AGG | - | chr2_1:77098246-77098265 | Msa0226570:intron | 45.0% | |
| TAGTGGCGCTGTAGCATTAT+AGG | + | chr2_1:77098567-77098586 | None:intergenic | 45.0% | |
| GTTCGAATTCCACTACGCTA+TGG | - | chr2_1:77098626-77098645 | Msa0226570:intron | 45.0% | |
| ATAGTGTCACCATAGCGTAG+TGG | + | chr2_1:77098638-77098657 | None:intergenic | 45.0% | |
| ACCAAACAGGACCTTATTCC+AGG | - | chr2_1:77098864-77098883 | Msa0226570:intron | 45.0% | |
| ACCTGGAATAAGGTCCTGTT+TGG | + | chr2_1:77098868-77098887 | None:intergenic | 45.0% | |
| GAGTTTGTGAATGCAGAACC+AGG | - | chr2_1:77098966-77098985 | Msa0226570:CDS | 45.0% | |
| TCTGCTGCTGCTACAACTAA+TGG | - | chr2_1:77099026-77099045 | Msa0226570:CDS | 45.0% | |
| ! | ATGGCTGAGGTATTTGTAGC+AGG | + | chr2_1:77099104-77099123 | None:intergenic | 45.0% |
| AAATACCTCAGCCATCACAG+TGG | - | chr2_1:77099109-77099128 | Msa0226570:CDS | 45.0% | |
| CATAAGAATGGACCGTATGC+TGG | - | chr2_1:77099146-77099165 | Msa0226570:CDS | 45.0% | |
| CCATGTGCATAGTTGCATTG+GGG | + | chr2_1:77097706-77097725 | None:intergenic | 45.0% | |
| GCCATGTGCATAGTTGCATT+GGG | + | chr2_1:77097707-77097726 | None:intergenic | 45.0% | |
| AGCCATGTGCATAGTTGCAT+TGG | + | chr2_1:77097708-77097727 | None:intergenic | 45.0% | |
| CACACCAGACATTGTAGCTA+CGG | - | chr2_1:77097778-77097797 | Msa0226570:CDS | 45.0% | |
| CATTCGATCAGTGTTGTGTC+CGG | - | chr2_1:77098067-77098086 | Msa0226570:intron | 45.0% | |
| GGCATGTGGTGAATTTAGCT+AGG | - | chr2_1:77098246-77098265 | Msa0226570:intron | 45.0% | |
| TAGTGGCGCTGTAGCATTAT+AGG | + | chr2_1:77098567-77098586 | None:intergenic | 45.0% | |
| GTTCGAATTCCACTACGCTA+TGG | - | chr2_1:77098626-77098645 | Msa0226570:intron | 45.0% | |
| ATAGTGTCACCATAGCGTAG+TGG | + | chr2_1:77098638-77098657 | None:intergenic | 45.0% | |
| ACCAAACAGGACCTTATTCC+AGG | - | chr2_1:77098864-77098883 | Msa0226570:intron | 45.0% | |
| ACCTGGAATAAGGTCCTGTT+TGG | + | chr2_1:77098868-77098887 | None:intergenic | 45.0% | |
| GAGTTTGTGAATGCAGAACC+AGG | - | chr2_1:77098966-77098985 | Msa0226570:CDS | 45.0% | |
| TCTGCTGCTGCTACAACTAA+TGG | - | chr2_1:77099026-77099045 | Msa0226570:CDS | 45.0% | |
| ! | ATGGCTGAGGTATTTGTAGC+AGG | + | chr2_1:77099104-77099123 | None:intergenic | 45.0% |
| AAATACCTCAGCCATCACAG+TGG | - | chr2_1:77099109-77099128 | Msa0226570:CDS | 45.0% | |
| CATAAGAATGGACCGTATGC+TGG | - | chr2_1:77099146-77099165 | Msa0226570:CDS | 45.0% | |
| !!! | TTTTTGTTATTAAAATAAAA+TGG | - | chr2_1:77098155-77098174 | Msa0226570:intron | 5.0% |
| !!! | TTTTGTTATTAAAATAAAAT+GGG | - | chr2_1:77098156-77098175 | Msa0226570:intron | 5.0% |
| !!! | TTTTTGTTATTAAAATAAAA+TGG | - | chr2_1:77098155-77098174 | Msa0226570:intron | 5.0% |
| !!! | TTTTGTTATTAAAATAAAAT+GGG | - | chr2_1:77098156-77098175 | Msa0226570:intron | 5.0% |
| TTGCATTGGGGTGCAACAAG+AGG | + | chr2_1:77097694-77097713 | None:intergenic | 50.0% | |
| CCCCAATGCAACTATGCACA+TGG | - | chr2_1:77097703-77097722 | Msa0226570:CDS | 50.0% | |
| AACGACCTCAGAACAGCAAC+AGG | - | chr2_1:77097730-77097749 | Msa0226570:CDS | 50.0% | |
| ! | TTGGTCCTGTTGCTGTTCTG+AGG | + | chr2_1:77097738-77097757 | None:intergenic | 50.0% |
| GTGTCCGTAGCTACAATGTC+TGG | + | chr2_1:77097785-77097804 | None:intergenic | 50.0% | |
| GTAGAGGAGGAGTTGCATGA+AGG | + | chr2_1:77097819-77097838 | None:intergenic | 50.0% | |
| GTTGTGTCCGGTGTTTGTGT+TGG | - | chr2_1:77098079-77098098 | Msa0226570:intron | 50.0% | |
| !! | TGGTTCTGGTGCCGATTATG+AGG | - | chr2_1:77098317-77098336 | Msa0226570:intron | 50.0% |
| AGAGGTAGTTGCCACTGTGA+TGG | + | chr2_1:77099123-77099142 | None:intergenic | 50.0% | |
| TTGCATTGGGGTGCAACAAG+AGG | + | chr2_1:77097694-77097713 | None:intergenic | 50.0% | |
| CCCCAATGCAACTATGCACA+TGG | - | chr2_1:77097703-77097722 | Msa0226570:CDS | 50.0% | |
| AACGACCTCAGAACAGCAAC+AGG | - | chr2_1:77097730-77097749 | Msa0226570:CDS | 50.0% | |
| ! | TTGGTCCTGTTGCTGTTCTG+AGG | + | chr2_1:77097738-77097757 | None:intergenic | 50.0% |
| GTGTCCGTAGCTACAATGTC+TGG | + | chr2_1:77097785-77097804 | None:intergenic | 50.0% | |
| GTAGAGGAGGAGTTGCATGA+AGG | + | chr2_1:77097819-77097838 | None:intergenic | 50.0% | |
| GTTGTGTCCGGTGTTTGTGT+TGG | - | chr2_1:77098079-77098098 | Msa0226570:intron | 50.0% | |
| !! | TGGTTCTGGTGCCGATTATG+AGG | - | chr2_1:77098317-77098336 | Msa0226570:intron | 50.0% |
| AGAGGTAGTTGCCACTGTGA+TGG | + | chr2_1:77099123-77099142 | None:intergenic | 50.0% | |
| TTGTCATGCTGCTGCTGCTG+AGG | + | chr2_1:77097859-77097878 | None:intergenic | 55.0% | |
| AGTTGCCACTGTGATGGCTG+AGG | + | chr2_1:77099117-77099136 | None:intergenic | 55.0% | |
| TTGTCATGCTGCTGCTGCTG+AGG | + | chr2_1:77097859-77097878 | None:intergenic | 55.0% | |
| AGTTGCCACTGTGATGGCTG+AGG | + | chr2_1:77099117-77099136 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 77097610 | 77099232 | 77097610 | ID=Msa0226570;Name=Msa0226570 |
| chr2_1 | mRNA | 77097610 | 77099232 | 77097610 | ID=Msa0226570-mRNA-1;Parent=Msa0226570;Name=Msa0226570-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|178 |
| chr2_1 | exon | 77098947 | 77099232 | 77098947 | ID=Msa0226570-mRNA-1:exon:23387;Parent=Msa0226570-mRNA-1 |
| chr2_1 | exon | 77097610 | 77097860 | 77097610 | ID=Msa0226570-mRNA-1:exon:23386;Parent=Msa0226570-mRNA-1 |
| chr2_1 | CDS | 77098947 | 77099232 | 77098947 | ID=Msa0226570-mRNA-1:cds;Parent=Msa0226570-mRNA-1 |
| chr2_1 | CDS | 77097610 | 77097860 | 77097610 | ID=Msa0226570-mRNA-1:cds;Parent=Msa0226570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
