AlfalfaGEDB | Msa0230190

M. sativa cultivar zhongmu-4 / Msa0230190

KEGG: -
GO: -
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0230190	KEH24950.1	91.393	244	17	2	1	240	1	244	1.14e-161	458

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0230190	sp\|Q9STS6\|LBD27_ARATH	57.292	96	40	1	9	104	36	130	2.87e-31	120

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0230190	A0A072UGP3	91.393	244	17	2	1	240	1	244	5.44e-162	458

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TFs/TRs:

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Gene ID	Type	Classification
Msa0230190	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0230190	MtrunA17_Chr6g0452661	91.393	244	17	2	1	240	1	244	1.05e-165	458
Msa0230190	MtrunA17_Chr5g0439111	54.545	242	90	6	1	230	1	234	1.83e-64	201
Msa0230190	MtrunA17_Chr6g0452691	64.234	137	46	1	1	134	1	137	1.12e-58	184
Msa0230190	MtrunA17_Chr6g0452671	56.429	140	57	2	7	143	9	147	2.14e-49	161
Msa0230190	MtrunA17_Chr4g0055441	48.108	185	51	4	10	190	3	146	5.95e-47	153
Msa0230190	MtrunA17_Chr4g0059901	60.256	78	30	1	8	85	9	85	6.64e-29	110
Msa0230190	MtrunA17_Chr5g0402611	44.037	109	53	2	7	108	6	113	1.07e-28	110
Msa0230190	MtrunA17_Chr3g0115431	52.500	80	37	1	10	89	10	88	5.04e-28	106
Msa0230190	MtrunA17_Chr2g0311601	45.745	94	50	1	10	103	14	106	1.34e-27	103
Msa0230190	MtrunA17_Chr8g0342351	40.385	156	84	2	8	163	11	157	4.63e-27	105

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0230190	AT3G47870.1	57.292	96	40	1	9	104	36	130	2.92e-32	120
Msa0230190	AT3G26660.1	43.750	96	53	1	8	103	4	98	3.65e-28	104
Msa0230190	AT3G26620.1	43.750	96	53	1	8	103	4	98	4.71e-28	104
Msa0230190	AT5G66870.1	35.762	151	90	3	10	154	8	157	3.58e-27	107
Msa0230190	AT3G13850.1	48.000	100	51	1	8	107	35	133	3.93e-27	105
Msa0230190	AT1G65620.1	50.602	83	40	1	7	89	7	88	7.03e-27	103
Msa0230190	AT1G65620.4	50.602	83	40	1	7	89	7	88	7.03e-27	103
Msa0230190	AT1G65620.3	50.602	83	40	1	7	89	7	88	7.03e-27	103
Msa0230190	AT1G65620.5	50.602	83	40	1	7	89	7	88	7.03e-27	103
Msa0230190	AT1G65620.2	50.602	83	40	1	7	89	7	88	7.03e-27	103

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Find 51 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAGTAGAAGGTTTGG+AGG	0.499480	2_2:+2096746	None:intergenic
AAACTTGAATATAAATTCTA+TGG	0.323327	2_2:-2096595	Msa0230190:CDS
AAATTAGAACAATATTTGAT+TGG	0.395330	2_2:-2096476	Msa0230190:CDS
AACACTTGAAAACTAGTAGA+AGG	0.390895	2_2:+2096738	None:intergenic
AACATCTTTGGTTTATCGGC+CGG	0.491014	2_2:+2097023	None:intergenic
AAGAATTATTGACATCATGA+GGG	0.573919	2_2:+2096628	None:intergenic
AATTAGAACAATATTTGATT+GGG	0.439912	2_2:-2096475	Msa0230190:CDS
AATTTGACATTGTCCCCACC+AGG	0.497390	2_2:+2096537	None:intergenic
ACAAGGGTTGCAAAATTGAG+TGG	0.655912	2_2:-2096570	Msa0230190:CDS
ACACCAAGACATCCATGAAT+TGG	0.323416	2_2:+2096873	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAATATCATCAAACCAAACA+AGG	-	chr2_2:2096373-2096392	Msa0230190:CDS	30.0%
GAAGATCCTAAACGAAATTA+AGG	-	chr2_2:2096523-2096542	Msa0230190:CDS	30.0%
ATCCTAAACGAAATTAAGGA+TGG	-	chr2_2:2096527-2096546	Msa0230190:CDS	30.0%
TTGAAAACTAGTAGAAGGTT+TGG	+	chr2_2:2096744-2096763	None:intergenic	30.0%
AACACTTGAAAACTAGTAGA+AGG	+	chr2_2:2096749-2096768	None:intergenic	30.0%
TCACTAACATAAGAAGAAGA+TGG	+	chr2_2:2096830-2096849	None:intergenic	30.0%
AGAATTATTGACATCATGAG+GGG	+	chr2_2:2096858-2096877	None:intergenic	30.0%
GAAGAATTATTGACATCATG+AGG	+	chr2_2:2096860-2096879	None:intergenic	30.0%
GGACAATGTCAAATTAGAAT+TGG	-	chr2_2:2096955-2096974	Msa0230190:CDS	30.0%
TAGAACAATATTTGATTGGG+AGG	-	chr2_2:2097012-2097031	Msa0230190:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	2096371	2097135	2096371	ID=Msa0230190;Name=Msa0230190
chr2_2	mRNA	2096371	2097135	2096371	ID=Msa0230190-mRNA-1;Parent=Msa0230190;Name=Msa0230190-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|254
chr2_2	exon	2096371	2097135	2096371	ID=Msa0230190-mRNA-1:exon:799;Parent=Msa0230190-mRNA-1
chr2_2	CDS	2096371	2097135	2096371	ID=Msa0230190-mRNA-1:cds;Parent=Msa0230190-mRNA-1

Gene Sequence

>Msa0230190

ATGAATATCATCAAACCAAACAAGGCTTGTGCAGCATGCAAATATCAAAGAAGAAAGTGCACTAGAGAGTGTGTTTTAGCTCCTTATTTTCCGGCCGATAAACCAAAGATGTTCGGCGATGCTCATCGTTTGTTTGGTGTTTCAAACATACAGAAGATCCTAAACGAAATTAAGGATGGTGATCAAAGAGATGAAGCAATGAAATCAATTATTTTTGAGTCAAAAATTCGTGTAAATTTCCCAATTCATGGATGTCTTGGTGTTATTCATATGTATGCAGGTATGATTAATGAGTCTTCTAAACAATTAAAATGGCTATTAGCTTATTGTAAGCAAAACAACCATTTACAACAACAAAATATTTATTCCTCCAAACCTTCTACTAGTTTTCAAGTGTTTAACAATTATGGTGATGTTGGTAATTATTATCACAATAGTGAAAATAATATGATGATACCATCTTCTTCTTATGTTAGTGAAACCACCCCTCATGATGTCAATAATTCTTCAATTGATACAAACTTGAATATAAATTCTATGGATACAAGGGTTGCAAAATTGAGTGGTGATAGCAACCCTGGTGGGGACAATGTCAAATTAGAATTGGACAGTGAAGAATTGGACGACTTTGATATACAAATTAGAACAATATTTGATTGGGAGGAAATAGAAGGATTTTTAGATACTGATGAACTACCTAGTTCGGATTTTAATATAGATGAATTGTCCAGTGCTATAGATGAACGTGGGAAAGGATGCATCTGA

Protein sequence

>Msa0230190

MNIIKPNKACAACKYQRRKCTRECVLAPYFPADKPKMFGDAHRLFGVSNIQKILNEIKDGDQRDEAMKSIIFESKIRVNFPIHGCLGVIHMYAGMINESSKQLKWLLAYCKQNNHLQQQNIYSSKPSTSFQVFNNYGDVGNYYHNSENNMMIPSSSYVSETTPHDVNNSSIDTNLNINSMDTRVAKLSGDSNPGGDNVKLELDSEELDDFDIQIRTIFDWEEIEGFLDTDELPSSDFNIDELSSAIDERGKGCI*