AlfalfaGEDB | Msa0231080

M. sativa cultivar zhongmu-4 / Msa0231080

KEGG: K09201|K20828
GO: GO:0001101 GO:0002831 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009968 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031347 GO:0032101 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0097305 GO:1900150 GO:1901000 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905957 GO:1905958 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00096.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0231080	XP_024633268.1	98.933	375	4	0	1	375	1	375	0.0	780

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0231080	sp\|Q2V3L3\|YY1_ARATH	68.407	364	99	7	10	361	12	371	9.02e-160	456

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0231080	A0A396J0E0	98.933	375	4	0	1	375	1	375	0.0	780

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TFs/TRs:

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Gene ID	Type	Classification
Msa0231080	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0231080	MtrunA17_Chr2g0277381	98.933	375	4	0	1	375	1	375	0.0	780
Msa0231080	MtrunA17_Chr1g0164511	28.497	193	118	5	77	256	13	198	1.44e-12	67.4
Msa0231080	MtrunA17_Chr3g0082161	28.497	193	118	5	77	256	13	198	1.92e-12	67.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0231080	AT4G06634.1	68.407	364	99	7	10	361	12	371	9.17e-161	456
Msa0231080	AT4G06634.3	65.489	368	96	9	10	361	12	364	1.79e-148	425
Msa0231080	AT4G06634.2	65.964	332	97	7	42	361	6	333	9.30e-135	389
Msa0231080	AT3G48430.1	27.273	121	80	2	77	195	1243	1357	2.81e-11	65.9
Msa0231080	AT3G48430.2	27.273	121	80	2	77	195	884	998	3.53e-11	65.5

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Find 106 sgRNAs with CRISPR-Local

Find 1121 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAACTGCCTCTCTCCA+TGG	0.576594	2_2:-3291850	None:intergenic
AACAAATTCTGAGAAATCAA+TGG	0.509712	2_2:+3290139	Msa0231080:exon
AAGACATTTCTTAATTCATA+CGG	0.439731	2_2:+3292342	Msa0231080:CDS
AAGACGTTGTTGCCACTGGT+GGG	0.637791	2_2:+3290370	Msa0231080:CDS
AAGATGGTTGGAGATATGCT+GGG	0.715505	2_2:+3302266	Msa0231080:CDS
AAGTACTTCAGTAGTTGGCT+CGG	0.511218	2_2:-3291756	None:intergenic
AATCGCGGTAGTTTCTGACG+CGG	0.713483	2_2:+3302533	Msa0231080:three_prime_UTR
ACATGCATATGGGCGATCAG+AGG	0.622960	2_2:-3301879	None:intergenic
ACATTTCTTAATTCATACGG+GGG	0.674154	2_2:+3292345	Msa0231080:CDS
ACCTTACCACAGCCTTCATG+AGG	0.637114	2_2:-3292385	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAGGGTTTGAAGAGAAATT+AGG	-	chr2_2:3290094-3290113	None:intergenic	30.0%
CTAAAATTCTTCAATCTCTG+TGG	+	chr2_2:3290116-3290135	Msa0231080:five_prime_UTR	30.0%
AGCTCAATTGACAGTAAAAA+AGG	-	chr2_2:3290430-3290449	None:intergenic	30.0%
TCATGTTCTTAATCAAACGA+TGG	+	chr2_2:3290628-3290647	Msa0231080:intron	30.0%
TAAGATTCATGTGCAAACAT+GGG	-	chr2_2:3291039-3291058	None:intergenic	30.0%
TCATATGCAAAAGGATCAAA+AGG	+	chr2_2:3291077-3291096	Msa0231080:intron	30.0%
CATATGCAAAAGGATCAAAA+GGG	+	chr2_2:3291078-3291097	Msa0231080:intron	30.0%
AAGATAACTGGAAAGCAAAT+TGG	-	chr2_2:3291472-3291491	None:intergenic	30.0%
CATAAATGCCTTGAAAGAAA+AGG	+	chr2_2:3291703-3291722	Msa0231080:CDS	30.0%
CAAAAAATGGAAACTAGGAT+GGG	-	chr2_2:3292069-3292088	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	3290062	3302606	3290062	ID=Msa0231080;Name=Msa0231080
chr2_2	mRNA	3290062	3302606	3290062	ID=Msa0231080-mRNA-1;Parent=Msa0231080;Name=Msa0231080-mRNA-1;_AED=0.00;_eAED=0.00;_QI=96\|1\|1\|1\|0.8\|1\|6\|276\|375
chr2_2	exon	3290062	3290243	3290062	ID=Msa0231080-mRNA-1:exon:1245;Parent=Msa0231080-mRNA-1
chr2_2	exon	3290362	3290420	3290362	ID=Msa0231080-mRNA-1:exon:1246;Parent=Msa0231080-mRNA-1
chr2_2	exon	3291696	3291895	3291696	ID=Msa0231080-mRNA-1:exon:1247;Parent=Msa0231080-mRNA-1
chr2_2	exon	3292316	3292405	3292316	ID=Msa0231080-mRNA-1:exon:1248;Parent=Msa0231080-mRNA-1
chr2_2	exon	3293058	3293201	3293058	ID=Msa0231080-mRNA-1:exon:1249;Parent=Msa0231080-mRNA-1
chr2_2	exon	3301782	3302606	3301782	ID=Msa0231080-mRNA-1:exon:1250;Parent=Msa0231080-mRNA-1
chr2_2	five_prime_UTR	3290062	3290157	3290062	ID=Msa0231080-mRNA-1:five_prime_utr;Parent=Msa0231080-mRNA-1
chr2_2	CDS	3290158	3290243	3290158	ID=Msa0231080-mRNA-1:cds;Parent=Msa0231080-mRNA-1
chr2_2	CDS	3290362	3290420	3290362	ID=Msa0231080-mRNA-1:cds;Parent=Msa0231080-mRNA-1
chr2_2	CDS	3291696	3291895	3291696	ID=Msa0231080-mRNA-1:cds;Parent=Msa0231080-mRNA-1
chr2_2	CDS	3292316	3292405	3292316	ID=Msa0231080-mRNA-1:cds;Parent=Msa0231080-mRNA-1
chr2_2	CDS	3293058	3293201	3293058	ID=Msa0231080-mRNA-1:cds;Parent=Msa0231080-mRNA-1
chr2_2	CDS	3301782	3302330	3301782	ID=Msa0231080-mRNA-1:cds;Parent=Msa0231080-mRNA-1
chr2_2	three_prime_UTR	3302331	3302606	3302331	ID=Msa0231080-mRNA-1:three_prime_utr;Parent=Msa0231080-mRNA-1

Gene Sequence

>Msa0231080

ATGGAGACTCACTACAACCACTCTCTCTTTGAGAGACGCCCCTTTCTCACGTCCAAGGCTCCCGCTGTTAAATGGGTCAAACAATGGGTTCCACAAGACGTTGTTGCCACTGGTGGGAAGTGTTTGCTGTTAAGATGGGTAACAGAGGATACCATAAATGCCTTGAAAGAAAAGGAAAAAGAACCATTAGCTCCTGAGCCAGAACCCGAGCCAACTACTGAAGTACTTTTTCTTTGTAGCTATGAAGGCTGTGGAAAGACATTTATAGATGCTGGTGCTTTGAGGAAGCATTCCCACATCCATGGAGAGAGGCAGTTTGTTTGCCATTATGAGGGGTGTGGAAAGAAATTTCTGGACAGCTCAAAGTTAAAAAGACATTTCTTAATTCATACGGGGGAGAGGGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCCTTGGATTTTAACCTGAGGTCTCACATGAAGACACATTCACAAGAGAATTATCATATATGCCCATACCCAGATTGTGGGAAGAGATACGCTCATGAATACAAGCTAAAGAATCACATTGCTTCCCATCATGAAAAGAGTACACCAATAGATGTGCCGATAAAGTATGCAACTCCTCCTTCAGAAAAGCAAACAAAAACTGCTAGACCTTCTGGAGCGACATACGGTTCGGCATCCTCTGATCGCCCATATGCATGTCCTTATGAAGGGTGTGAAAAGGCTTACATTCATGAGTACAAGCTTAAACTGCATTTAAAGAGGGAGCATCCTGGCCACATAAATGATGAAAATGCTATGCATGCTCTGGCTAATAATGCTGAAAATGAAATGGATGAAGCAAGTGATCACGATGCTTATGGTGGAAAACGTTCCAATGGTAAAAGTCAGAAGCAAAGCAGGCCCAAGCCAAACTTGAAAATGCCTCCTTCTAAAGTTGCTCAGCGTAAAGGGTCTACTCCAACCCCTGCCACTTTTAATATGGCTAAAAAACCTTGGCCAGTGAAAGAAGAAACTTACGATGAAGACAGCGAAGAAACTGAGGAGGAGGATCGTGACAATGTTGAAGATGGTTGGAGATATGCTGGGAACAACGAAGATGATGATGAGGAAACAGAATATGAAGACTGA

Protein sequence

>Msa0231080

METHYNHSLFERRPFLTSKAPAVKWVKQWVPQDVVATGGKCLLLRWVTEDTINALKEKEKEPLAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKSTPIDVPIKYATPPSEKQTKTARPSGATYGSASSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHINDENAMHALANNAENEMDEASDHDAYGGKRSNGKSQKQSRPKPNLKMPPSKVAQRKGSTPTPATFNMAKKPWPVKEETYDEDSEETEEEDRDNVEDGWRYAGNNEDDDEETEYED*