Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0231160 | XP_003592973.1 | 88.486 | 469 | 31 | 4 | 1 | 464 | 1 | 451 | 0.0 | 836 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0231160 | sp|Q84WU6|ARFQ_ARATH | 37.653 | 409 | 198 | 11 | 9 | 370 | 15 | 413 | 3.05e-84 | 273 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0231160 | G7INP6 | 88.486 | 469 | 31 | 4 | 1 | 464 | 1 | 451 | 0.0 | 836 |
Gene ID | Type | Classification |
---|---|---|
Msa0231160 | TF | B3-ARF |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0231160 | MtrunA17_Chr2g0277461 | 88.486 | 469 | 31 | 4 | 1 | 464 | 1 | 451 | 0.0 | 836 |
Msa0231160 | MtrunA17_Chr2g0277531 | 72.152 | 316 | 72 | 6 | 7 | 317 | 14 | 318 | 1.95e-160 | 456 |
Msa0231160 | MtrunA17_Chr5g0424931 | 45.541 | 527 | 209 | 13 | 7 | 466 | 13 | 528 | 3.17e-135 | 400 |
Msa0231160 | MtrunA17_Chr1g0178011 | 49.891 | 459 | 198 | 10 | 6 | 455 | 5 | 440 | 3.82e-134 | 394 |
Msa0231160 | MtrunA17_Chr5g0417281 | 43.726 | 526 | 224 | 13 | 3 | 466 | 1 | 516 | 4.78e-121 | 363 |
Msa0231160 | MtrunA17_Chr5g0436761 | 43.376 | 468 | 239 | 13 | 5 | 459 | 4 | 458 | 1.36e-107 | 327 |
Msa0231160 | MtrunA17_Chr5g0417211 | 42.857 | 469 | 194 | 12 | 5 | 465 | 4 | 406 | 1.81e-105 | 320 |
Msa0231160 | MtrunA17_Chr2g0289221 | 52.516 | 318 | 136 | 6 | 6 | 317 | 13 | 321 | 1.72e-102 | 310 |
Msa0231160 | MtrunA17_Chr3g0115271 | 35.663 | 558 | 252 | 16 | 5 | 465 | 11 | 558 | 9.75e-95 | 298 |
Msa0231160 | MtrunA17_Chr5g0424801 | 45.042 | 353 | 164 | 13 | 7 | 344 | 6 | 343 | 4.11e-89 | 276 |
Msa0231160 | MtrunA17_Chr5g0425261 | 45.198 | 354 | 164 | 13 | 7 | 346 | 6 | 343 | 4.38e-89 | 276 |
Msa0231160 | MtrunA17_Chr5g0424741 | 41.388 | 418 | 176 | 15 | 6 | 363 | 5 | 413 | 1.10e-80 | 259 |
Msa0231160 | MtrunA17_Chr2g0326761 | 39.152 | 401 | 179 | 12 | 12 | 358 | 10 | 399 | 6.53e-80 | 261 |
Msa0231160 | MtrunA17_Chr4g0028971 | 36.740 | 411 | 191 | 11 | 4 | 355 | 3 | 403 | 4.10e-76 | 251 |
Msa0231160 | MtrunA17_Chr1g0181211 | 35.075 | 402 | 191 | 11 | 12 | 353 | 26 | 417 | 5.67e-74 | 246 |
Msa0231160 | MtrunA17_Chr1g0199681 | 38.035 | 397 | 186 | 13 | 13 | 358 | 94 | 481 | 2.97e-73 | 244 |
Msa0231160 | MtrunA17_Chr7g0264171 | 35.507 | 414 | 191 | 15 | 10 | 358 | 28 | 430 | 2.98e-68 | 229 |
Msa0231160 | MtrunA17_Chr7g0264161 | 39.617 | 313 | 158 | 12 | 23 | 317 | 2 | 301 | 2.26e-59 | 197 |
Msa0231160 | MtrunA17_Chr5g0425661 | 49.268 | 205 | 93 | 4 | 13 | 214 | 37 | 233 | 3.28e-56 | 186 |
Msa0231160 | MtrunA17_Chr8g0385791 | 32.398 | 392 | 247 | 9 | 13 | 391 | 59 | 445 | 7.17e-51 | 184 |
Msa0231160 | MtrunA17_Chr8g0376771 | 33.429 | 350 | 217 | 8 | 13 | 349 | 23 | 369 | 2.87e-48 | 177 |
Msa0231160 | MtrunA17_Chr4g0070181 | 33.333 | 354 | 209 | 10 | 10 | 348 | 20 | 361 | 3.02e-48 | 178 |
Msa0231160 | MtrunA17_Chr2g0282961 | 30.747 | 348 | 205 | 9 | 13 | 337 | 53 | 387 | 1.61e-47 | 173 |
Msa0231160 | MtrunA17_Chr2g0285461 | 32.670 | 352 | 218 | 8 | 13 | 349 | 23 | 370 | 2.33e-47 | 175 |
Msa0231160 | MtrunA17_Chr2g0301251 | 32.768 | 354 | 211 | 10 | 10 | 348 | 20 | 361 | 3.33e-47 | 175 |
Msa0231160 | MtrunA17_Chr3g0109391 | 31.842 | 380 | 239 | 8 | 13 | 379 | 26 | 398 | 4.27e-47 | 174 |
Msa0231160 | MtrunA17_Chr5g0433301 | 32.000 | 350 | 223 | 7 | 13 | 349 | 24 | 371 | 4.79e-46 | 171 |
Msa0231160 | MtrunA17_Chr2g0276781 | 32.500 | 360 | 218 | 9 | 13 | 356 | 23 | 373 | 2.82e-45 | 167 |
Msa0231160 | MtrunA17_Chr1g0156321 | 33.529 | 340 | 207 | 9 | 13 | 338 | 43 | 377 | 3.33e-45 | 169 |
Msa0231160 | MtrunA17_Chr4g0046371 | 32.044 | 362 | 196 | 11 | 8 | 337 | 33 | 376 | 5.13e-44 | 164 |
Msa0231160 | MtrunA17_Chr8g0389081 | 32.479 | 351 | 217 | 10 | 5 | 340 | 24 | 369 | 3.03e-43 | 163 |
Msa0231160 | MtrunA17_Chr4g0009751 | 30.055 | 366 | 237 | 9 | 13 | 365 | 19 | 378 | 1.28e-41 | 156 |
Msa0231160 | MtrunA17_Chr8g0346711 | 30.814 | 344 | 217 | 9 | 13 | 343 | 29 | 364 | 9.05e-40 | 152 |
Msa0231160 | MtrunA17_Chr7g0239061 | 28.647 | 377 | 243 | 9 | 13 | 373 | 14 | 380 | 1.12e-39 | 151 |
Msa0231160 | MtrunA17_Chr4g0029671 | 30.435 | 368 | 228 | 10 | 13 | 356 | 54 | 417 | 1.01e-37 | 146 |
Msa0231160 | MtrunA17_Chr2g0326281 | 30.278 | 360 | 212 | 8 | 13 | 337 | 56 | 411 | 1.18e-37 | 146 |
Msa0231160 | MtrunA17_Chr5g0419861 | 58.333 | 120 | 40 | 6 | 51 | 165 | 9 | 123 | 6.64e-33 | 121 |
Msa0231160 | MtrunA17_Chr5g0425651 | 48.780 | 123 | 51 | 6 | 239 | 350 | 1 | 122 | 1.57e-24 | 98.2 |
Msa0231160 | MtrunA17_Chr5g0424791 | 41.830 | 153 | 71 | 5 | 66 | 214 | 13 | 151 | 1.27e-23 | 96.7 |
Msa0231160 | MtrunA17_Chr8g0356211 | 27.928 | 222 | 136 | 8 | 131 | 337 | 8 | 220 | 4.73e-17 | 82.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0231160 | AT1G77850.1 | 37.653 | 409 | 198 | 11 | 9 | 370 | 15 | 413 | 3.10e-85 | 273 |
Msa0231160 | AT1G77850.2 | 37.653 | 409 | 198 | 11 | 9 | 370 | 15 | 413 | 4.90e-85 | 273 |
Msa0231160 | AT4G30080.1 | 37.157 | 401 | 187 | 13 | 12 | 358 | 18 | 407 | 1.24e-73 | 244 |
Msa0231160 | AT2G28350.2 | 35.749 | 414 | 195 | 12 | 5 | 358 | 2 | 404 | 2.63e-72 | 241 |
Msa0231160 | AT2G28350.1 | 35.749 | 414 | 195 | 12 | 5 | 358 | 2 | 404 | 2.73e-72 | 241 |
Msa0231160 | AT4G23980.2 | 33.731 | 335 | 208 | 6 | 13 | 337 | 12 | 342 | 1.35e-49 | 179 |
Msa0231160 | AT4G23980.1 | 33.731 | 335 | 208 | 6 | 13 | 337 | 12 | 342 | 1.42e-49 | 179 |
Msa0231160 | AT5G37020.2 | 31.806 | 371 | 238 | 7 | 13 | 370 | 22 | 390 | 2.34e-48 | 177 |
Msa0231160 | AT5G37020.1 | 31.806 | 371 | 238 | 7 | 13 | 370 | 22 | 390 | 2.77e-48 | 177 |
Msa0231160 | AT1G30330.3 | 33.428 | 353 | 214 | 9 | 13 | 349 | 25 | 372 | 3.59e-47 | 175 |
Msa0231160 | AT1G30330.2 | 33.428 | 353 | 214 | 9 | 13 | 349 | 25 | 372 | 3.59e-47 | 175 |
Msa0231160 | AT1G30330.1 | 33.428 | 353 | 214 | 9 | 13 | 349 | 23 | 370 | 3.71e-47 | 175 |
Msa0231160 | AT5G62000.4 | 32.099 | 405 | 255 | 9 | 13 | 403 | 61 | 459 | 5.93e-47 | 174 |
Msa0231160 | AT5G62000.2 | 32.099 | 405 | 255 | 9 | 13 | 403 | 61 | 459 | 6.63e-47 | 174 |
Msa0231160 | AT5G62000.5 | 32.099 | 405 | 255 | 9 | 13 | 403 | 61 | 459 | 6.63e-47 | 174 |
Msa0231160 | AT5G62000.3 | 32.099 | 405 | 255 | 9 | 13 | 403 | 61 | 459 | 6.63e-47 | 174 |
Msa0231160 | AT5G62000.1 | 32.099 | 405 | 255 | 9 | 13 | 403 | 61 | 459 | 6.63e-47 | 174 |
Msa0231160 | AT5G20730.1 | 32.687 | 361 | 217 | 9 | 3 | 348 | 14 | 363 | 8.07e-47 | 174 |
Msa0231160 | AT5G20730.3 | 32.687 | 361 | 217 | 9 | 3 | 348 | 14 | 363 | 1.05e-46 | 174 |
Msa0231160 | AT2G33860.1 | 31.988 | 347 | 202 | 9 | 13 | 337 | 54 | 388 | 1.55e-46 | 170 |
Msa0231160 | AT2G46530.1 | 31.421 | 366 | 229 | 9 | 13 | 364 | 21 | 378 | 2.31e-46 | 170 |
Msa0231160 | AT5G20730.2 | 32.687 | 361 | 216 | 10 | 3 | 348 | 14 | 362 | 3.13e-46 | 172 |
Msa0231160 | AT2G46530.3 | 31.421 | 366 | 229 | 9 | 13 | 364 | 42 | 399 | 3.78e-46 | 169 |
Msa0231160 | AT1G34310.1 | 33.237 | 346 | 200 | 9 | 8 | 337 | 22 | 352 | 4.94e-45 | 166 |
Msa0231160 | AT3G61830.1 | 31.680 | 363 | 218 | 10 | 13 | 356 | 25 | 376 | 5.05e-45 | 166 |
Msa0231160 | AT1G19850.2 | 34.294 | 347 | 202 | 11 | 10 | 338 | 40 | 378 | 2.35e-44 | 167 |
Msa0231160 | AT1G19850.1 | 34.294 | 347 | 202 | 11 | 10 | 338 | 51 | 389 | 2.42e-44 | 167 |
Msa0231160 | AT1G34390.1 | 32.659 | 346 | 200 | 10 | 8 | 337 | 22 | 350 | 8.59e-44 | 162 |
Msa0231160 | AT1G35520.1 | 32.174 | 345 | 215 | 8 | 3 | 337 | 17 | 352 | 1.10e-43 | 162 |
Msa0231160 | AT1G19220.1 | 30.833 | 360 | 220 | 10 | 4 | 348 | 16 | 361 | 2.14e-43 | 164 |
Msa0231160 | AT5G60450.2 | 31.445 | 353 | 212 | 8 | 8 | 337 | 36 | 381 | 2.24e-43 | 163 |
Msa0231160 | AT5G60450.1 | 31.609 | 348 | 208 | 8 | 13 | 337 | 65 | 405 | 5.93e-43 | 162 |
Msa0231160 | AT1G35540.1 | 32.456 | 342 | 208 | 10 | 8 | 337 | 22 | 352 | 2.67e-42 | 159 |
Msa0231160 | AT1G35240.1 | 32.353 | 340 | 211 | 8 | 8 | 337 | 22 | 352 | 3.16e-42 | 158 |
Msa0231160 | AT1G34410.1 | 31.765 | 340 | 213 | 8 | 8 | 337 | 22 | 352 | 1.55e-41 | 156 |
Msa0231160 | AT1G59750.2 | 31.339 | 351 | 222 | 9 | 13 | 350 | 22 | 366 | 1.72e-40 | 154 |
Msa0231160 | AT1G59750.1 | 31.339 | 351 | 222 | 9 | 13 | 350 | 22 | 366 | 2.29e-40 | 154 |
Msa0231160 | AT1G59750.3 | 31.339 | 351 | 222 | 9 | 13 | 350 | 22 | 366 | 2.29e-40 | 154 |
Msa0231160 | AT1G59750.4 | 31.339 | 351 | 222 | 9 | 13 | 350 | 22 | 366 | 2.51e-40 | 154 |
Msa0231160 | AT1G34170.1 | 30.372 | 349 | 222 | 9 | 1 | 337 | 13 | 352 | 5.06e-40 | 150 |
Msa0231160 | AT1G34170.2 | 29.942 | 344 | 204 | 8 | 1 | 337 | 13 | 326 | 1.15e-37 | 144 |
Msa0231160 | AT1G34170.3 | 29.942 | 344 | 204 | 8 | 1 | 337 | 13 | 326 | 4.18e-37 | 143 |
Msa0231160 | AT3G61830.2 | 31.392 | 309 | 182 | 10 | 67 | 356 | 28 | 325 | 6.39e-32 | 128 |
Msa0231160 | AT5G37020.3 | 32.584 | 267 | 165 | 7 | 117 | 370 | 31 | 295 | 3.03e-31 | 127 |
Msa0231160 | AT1G43950.1 | 34.259 | 216 | 121 | 5 | 8 | 217 | 22 | 222 | 5.81e-30 | 116 |
Msa0231160 | AT2G33860.2 | 32.479 | 234 | 141 | 6 | 117 | 337 | 2 | 231 | 6.03e-30 | 121 |
Msa0231160 | AT2G46530.2 | 31.679 | 262 | 164 | 7 | 114 | 364 | 34 | 291 | 3.50e-29 | 120 |
Msa0231160 | ATMG00940.1 | 43.210 | 81 | 42 | 3 | 236 | 313 | 65 | 144 | 9.44e-11 | 60.8 |
Find 100 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATCTCGTACTTCTAATTTA+TGG | 0.108193 | 2_2:-3361946 | Msa0231160:CDS |
TTTGAATATCGTAGGTTAAT+TGG | 0.128409 | 2_2:-3360364 | Msa0231160:intron |
GATGGTTCAATTATGTTATT+TGG | 0.174464 | 2_2:-3360005 | Msa0231160:CDS |
GCACATGTGTGCCAAATTTC+TGG | 0.215696 | 2_2:+3362826 | None:intergenic |
CGCATGTGCGTCCAGAAATT+TGG | 0.217939 | 2_2:-3362837 | Msa0231160:CDS |
TTCATCTTAACTCTCATTCT+AGG | 0.234993 | 2_2:+3362016 | None:intergenic |
GATTGGCAACCTCTTCTTTA+GGG | 0.275578 | 2_2:+3362560 | None:intergenic |
AGATTGGCAACCTCTTCTTT+AGG | 0.275924 | 2_2:+3362559 | None:intergenic |
TAATTTATGGCGCATGCTTC+AGG | 0.288610 | 2_2:-3361933 | Msa0231160:intron |
ATAGAGATTGTCCCTTGATA+TGG | 0.294890 | 2_2:+3361971 | None:intergenic |
AGATGGACATCGTTGGTTAT+TGG | 0.309930 | 2_2:+3362589 | None:intergenic |
TTGAATATCGTAGGTTAATT+GGG | 0.314702 | 2_2:-3360363 | Msa0231160:intron |
TGCCCAACTAAGTGATAAAA+AGG | 0.319098 | 2_2:-3360219 | Msa0231160:CDS |
CTGTTCGTTACCGACGTTCA+TGG | 0.320691 | 2_2:-3362391 | Msa0231160:CDS |
TTCATCGCGGTTGTTGAGAT+TGG | 0.361556 | 2_2:+3362543 | None:intergenic |
TAAACTCTTGAATGCAACTT+TGG | 0.370692 | 2_2:+3362784 | None:intergenic |
GATATATAACATGTTTCTCT+TGG | 0.384809 | 2_2:+3362330 | None:intergenic |
AATGGAATTCGTTTGTTAAG+AGG | 0.398429 | 2_2:-3362303 | Msa0231160:CDS |
CAGAGGAGTTCAAAATAATA+TGG | 0.402834 | 2_2:+3360075 | None:intergenic |
TCAACGGGAAAGTTATTTGT+TGG | 0.427846 | 2_2:-3362238 | Msa0231160:CDS |
CAACGGGAAAGTTATTTGTT+GGG | 0.431447 | 2_2:-3362237 | Msa0231160:CDS |
GCAGTTTGTTGCAGCGGCGG+CGG | 0.440577 | 2_2:-3362200 | Msa0231160:CDS |
TGAGTTGGAGAAGGCAGTAA+TGG | 0.441158 | 2_2:-3362164 | Msa0231160:CDS |
TCATCTTAACTCTCATTCTA+GGG | 0.445548 | 2_2:+3362017 | None:intergenic |
ATGAATCAATGAAGATTCAA+TGG | 0.450458 | 2_2:-3362042 | Msa0231160:CDS |
TGAGTCTTTCATGAAAATAA+CGG | 0.452973 | 2_2:+3362258 | None:intergenic |
TGAAGACTGATAAATCTTCA+AGG | 0.454632 | 2_2:-3361997 | Msa0231160:CDS |
CAGGTGTTGAGACGAGGATT+CGG | 0.457588 | 2_2:+3362411 | None:intergenic |
TTGGGATGAATTTCAAGTCT+CGG | 0.458166 | 2_2:-3360345 | Msa0231160:CDS |
ACTATCCTCGAGGGGATGAT+TGG | 0.466368 | 2_2:-3362096 | Msa0231160:CDS |
AGTCAACCCGTGGTGGGTTG+AGG | 0.468552 | 2_2:-3360309 | Msa0231160:CDS |
CACGCAGTTTGTTGCAGCGG+CGG | 0.472211 | 2_2:-3362203 | Msa0231160:CDS |
CATGAACGTCGGTAACGAAC+AGG | 0.475779 | 2_2:+3362392 | None:intergenic |
ATATATAACATGTTTCTCTT+GGG | 0.481990 | 2_2:+3362331 | None:intergenic |
TAGAGATTGTCCCTTGATAT+GGG | 0.482488 | 2_2:+3361972 | None:intergenic |
AAAAGAGTGTGTGTGGGTAA+TGG | 0.489755 | 2_2:+3362711 | None:intergenic |
TCTCATATCAAGGGAGATGA+TGG | 0.490070 | 2_2:-3359945 | Msa0231160:CDS |
CACCACGGGTTGACTCGTCT+TGG | 0.505317 | 2_2:+3360317 | None:intergenic |
TGCCGATCCTCACACGGATG+AGG | 0.509768 | 2_2:-3362635 | Msa0231160:CDS |
TCTTCAAGGATCCCATATCA+AGG | 0.512818 | 2_2:-3361983 | Msa0231160:CDS |
AGTTATTTGTTGGGATTCGC+AGG | 0.513561 | 2_2:-3362228 | Msa0231160:CDS |
AAGCCGCGGGAAGACATTAT+CGG | 0.516617 | 2_2:+3362444 | None:intergenic |
AGTAATGGAGGCATTGAAGT+TGG | 0.517015 | 2_2:-3362149 | Msa0231160:CDS |
GACCTCATCCGTGTGAGGAT+CGG | 0.528604 | 2_2:+3362633 | None:intergenic |
TTTCACAATTCTCATATCAA+GGG | 0.529587 | 2_2:-3359954 | Msa0231160:CDS |
ACATGTTATATATCTCTGAA+TGG | 0.530162 | 2_2:-3362321 | Msa0231160:CDS |
AGCGGCGGCGGAGCAGAAGA+AGG | 0.532222 | 2_2:-3362188 | Msa0231160:CDS |
AAGAGGAAGAAACTCGTGGC+TGG | 0.538632 | 2_2:-3362286 | Msa0231160:CDS |
GGAGCAGAAGAAGGATGAGT+TGG | 0.543711 | 2_2:-3362179 | Msa0231160:CDS |
GGTGATACTTTATCATGTAT+AGG | 0.550061 | 2_2:+3360104 | None:intergenic |
TGGGAAACCCGCGGCAGACA+TGG | 0.563883 | 2_2:+3362350 | None:intergenic |
AAATTGTTTACTATCCTCGA+GGG | 0.568194 | 2_2:-3362105 | Msa0231160:CDS |
CGGCACAAAAGCGAGGTATG+TGG | 0.571206 | 2_2:+3362464 | None:intergenic |
GAAGAAGGATGAGTTGGAGA+AGG | 0.573545 | 2_2:-3362173 | Msa0231160:CDS |
AGAGTGTGTGTGGGTAATGG+AGG | 0.575190 | 2_2:+3362714 | None:intergenic |
GAGACGAGGATTCGGCCTCT+AGG | 0.578409 | 2_2:+3362419 | None:intergenic |
ATTTCTGGACGCACATGCGA+TGG | 0.580120 | 2_2:+3362841 | None:intergenic |
TCTTGAAAACCCTAAAGAAG+AGG | 0.581476 | 2_2:-3362569 | Msa0231160:CDS |
TCTCCTTGCCGATCCTCACA+CGG | 0.588085 | 2_2:-3362641 | Msa0231160:CDS |
CTTCCCGCGGCTTGACCTAG+AGG | 0.588102 | 2_2:-3362434 | Msa0231160:CDS |
AATGGAGGCATTGAAGTTGG+CGG | 0.590740 | 2_2:-3362146 | Msa0231160:CDS |
AATGAGATCACTTCAACGGA+AGG | 0.592309 | 2_2:-3360161 | Msa0231160:CDS |
GAAGTTGGCGGAAGAGAACA+AGG | 0.600106 | 2_2:-3362134 | Msa0231160:CDS |
GTTCTGATGTTAACAATGCT+CGG | 0.602948 | 2_2:-3362492 | Msa0231160:CDS |
AAATAACCTCAACCCACCAC+GGG | 0.608942 | 2_2:+3360303 | None:intergenic |
CTTCAAGGATCCCATATCAA+GGG | 0.609531 | 2_2:-3361982 | Msa0231160:CDS |
GAGACGATACAAGGAGTGAA+AGG | 0.609567 | 2_2:+3362673 | None:intergenic |
TTTGTAGAAAAGAGTGTGTG+TGG | 0.609647 | 2_2:+3362704 | None:intergenic |
GAACACGCAGTTTGTTGCAG+CGG | 0.616426 | 2_2:-3362206 | Msa0231160:CDS |
TTTGAATGAGATCACTTCAA+CGG | 0.618869 | 2_2:-3360165 | Msa0231160:CDS |
GTGTTGCAATTGTGAGTCGA+AGG | 0.619072 | 2_2:+3360041 | None:intergenic |
CGGCCTCTAGGTCAAGCCGC+GGG | 0.620797 | 2_2:+3362431 | None:intergenic |
CGAAGGAAACTTTGTCTCAG+AGG | 0.621557 | 2_2:+3360058 | None:intergenic |
TCAACAGCTGAGACGATACA+AGG | 0.622390 | 2_2:+3362664 | None:intergenic |
GAAATTGTTTACTATCCTCG+AGG | 0.624214 | 2_2:-3362106 | Msa0231160:CDS |
GTTGGAGAAGGCAGTAATGG+AGG | 0.624776 | 2_2:-3362161 | Msa0231160:CDS |
ATGAGATCACTTCAACGGAA+GGG | 0.630141 | 2_2:-3360160 | Msa0231160:CDS |
GTAATGGAGGAAGAAGAAGA+AGG | 0.639327 | 2_2:+3362727 | None:intergenic |
AGAGTTTATTATTTCCCACA+AGG | 0.642714 | 2_2:-3362769 | Msa0231160:CDS |
AACGAACAGGTGTTGAGACG+AGG | 0.644655 | 2_2:+3362405 | None:intergenic |
CAAGACGAGTCAACCCGTGG+TGG | 0.644679 | 2_2:-3360316 | Msa0231160:CDS |
TTGTGAAAATTGCTTACATG+AGG | 0.646619 | 2_2:+3359969 | None:intergenic |
AAGACGAGTCAACCCGTGGT+GGG | 0.646955 | 2_2:-3360315 | Msa0231160:CDS |
TCGGCCTCTAGGTCAAGCCG+CGG | 0.648171 | 2_2:+3362430 | None:intergenic |
GAAATAACCTCAACCCACCA+CGG | 0.649182 | 2_2:+3360302 | None:intergenic |
TGGTTGCTTCTGAACAGACA+TGG | 0.659994 | 2_2:+3362861 | None:intergenic |
TGTTTCTCTTGGGAAACCCG+CGG | 0.663878 | 2_2:+3362341 | None:intergenic |
ACAAAGACCTCATCCGTGTG+AGG | 0.664295 | 2_2:+3362628 | None:intergenic |
TTCCAAGACGAGTCAACCCG+TGG | 0.669719 | 2_2:-3360319 | Msa0231160:CDS |
TTCAAAATAATATGGCTGTG+AGG | 0.673161 | 2_2:+3360083 | None:intergenic |
ACATTATCGGCACAAAAGCG+AGG | 0.676914 | 2_2:+3362457 | None:intergenic |
TTGTAGAAAAGAGTGTGTGT+GGG | 0.681947 | 2_2:+3362705 | None:intergenic |
TGTTAAGAGGAAGAAACTCG+TGG | 0.682365 | 2_2:-3362290 | Msa0231160:CDS |
GTGCCGATAATGTCTTCCCG+CGG | 0.682542 | 2_2:-3362447 | Msa0231160:CDS |
GATGATGGCTATAAGAGCTG+CGG | 0.682568 | 2_2:-3359930 | Msa0231160:CDS |
TGAAACTTCACCATGAACGT+CGG | 0.683050 | 2_2:+3362381 | None:intergenic |
AATTGTTTACTATCCTCGAG+GGG | 0.689459 | 2_2:-3362104 | Msa0231160:CDS |
CATCCGTGTGAGGATCGGCA+AGG | 0.710355 | 2_2:+3362638 | None:intergenic |
TCACACCAATCATCCCCTCG+AGG | 0.748749 | 2_2:+3362091 | None:intergenic |
CAAAAGAAACAACTTCATCG+CGG | 0.749390 | 2_2:+3362530 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GATTTTCTTAAATTTATTAT+CGG | + | chr2_2:3360990-3361009 | None:intergenic | 10.0% |
!!! | ATAATTTCTTTTTCTTTTCT+TGG | - | chr2_2:3360867-3360886 | Msa0231160:intron | 15.0% |
!!! | TTTTTTTGTGGTATTTTTTT+TGG | - | chr2_2:3361134-3361153 | Msa0231160:intron | 15.0% |
!!! | TATTTTTTTTGGTATAAATC+AGG | - | chr2_2:3361145-3361164 | Msa0231160:intron | 15.0% |
!! | CGTATATTTGAATATTTAAT+TGG | - | chr2_2:3361486-3361505 | Msa0231160:intron | 15.0% |
!! | TAGTTACTAACATTAAAAAA+AGG | + | chr2_2:3361533-3361552 | None:intergenic | 15.0% |
!! | GTAAAAAAAAATAGATGTTA+AGG | + | chr2_2:3361576-3361595 | None:intergenic | 15.0% |
!! | ACGATATTCAAATAAAAAAA+TGG | + | chr2_2:3362404-3362423 | None:intergenic | 15.0% |
!!! | TTTTTTTATTTGAATATCGT+AGG | - | chr2_2:3362404-3362423 | Msa0231160:CDS | 15.0% |
!!! | AGTTCTAAATTTTTTTGTTT+GGG | + | chr2_2:3362526-3362545 | None:intergenic | 15.0% |
!!! | TAGTTCTAAATTTTTTTGTT+TGG | + | chr2_2:3362527-3362546 | None:intergenic | 15.0% |
!! | ATATATAACATGTTTCTCTT+GGG | + | chr2_2:3360448-3360467 | None:intergenic | 20.0% |
!!! | GTTGATAAATGATTTTTTTG+TGG | - | chr2_2:3361122-3361141 | Msa0231160:intron | 20.0% |
!! | TCTAATTATAGATATAGCAT+TGG | + | chr2_2:3361219-3361238 | None:intergenic | 20.0% |
!! | TTTAACTATAGATGAAACTT+TGG | + | chr2_2:3362186-3362205 | None:intergenic | 20.0% |
!! | ATAGTTAAATGACTCATTAA+AGG | - | chr2_2:3362197-3362216 | Msa0231160:CDS | 20.0% |
!!! | AGACTTTATTTGAACAATAT+TGG | - | chr2_2:3362296-3362315 | Msa0231160:CDS | 20.0% |
!!! | TTCTAAATTTTTTTGTTTGG+GGG | + | chr2_2:3362524-3362543 | None:intergenic | 20.0% |
!!! | GTTCTAAATTTTTTTGTTTG+GGG | + | chr2_2:3362525-3362544 | None:intergenic | 20.0% |
! | GATATATAACATGTTTCTCT+TGG | + | chr2_2:3360449-3360468 | None:intergenic | 25.0% |
! | ACATGTTATATATCTCTGAA+TGG | - | chr2_2:3360455-3360474 | Msa0231160:intron | 25.0% |
! | TGAGTCTTTCATGAAAATAA+CGG | + | chr2_2:3360521-3360540 | None:intergenic | 25.0% |
!! | TATTTTCATGAAAGACTCAA+CGG | - | chr2_2:3360522-3360541 | Msa0231160:intron | 25.0% |
! | ATGAATCAATGAAGATTCAA+TGG | - | chr2_2:3360734-3360753 | Msa0231160:intron | 25.0% |
! | TATCTCGTACTTCTAATTTA+TGG | - | chr2_2:3360830-3360849 | Msa0231160:intron | 25.0% |
! | AAATGAAATGCAATATCGAT+TGG | + | chr2_2:3361430-3361449 | None:intergenic | 25.0% |
!! | TCGGTTAATTTACCAATTTT+GGG | - | chr2_2:3362069-3362088 | Msa0231160:CDS | 25.0% |
!! | GTCATATGAGATAGATTTTA+AGG | - | chr2_2:3362230-3362249 | Msa0231160:CDS | 25.0% |
!!! | ATGAGATAGATTTTAAGGTT+AGG | - | chr2_2:3362235-3362254 | Msa0231160:CDS | 25.0% |
!!! | TGAGATAGATTTTAAGGTTA+GGG | - | chr2_2:3362236-3362255 | Msa0231160:CDS | 25.0% |
! | TTTGAATATCGTAGGTTAAT+TGG | - | chr2_2:3362412-3362431 | Msa0231160:CDS | 25.0% |
! | TTGAATATCGTAGGTTAATT+GGG | - | chr2_2:3362413-3362432 | Msa0231160:CDS | 25.0% |
!! | TTCCTTTTTATCACTTAGTT+GGG | + | chr2_2:3362562-3362581 | None:intergenic | 25.0% |
!! | TTTCCTTTTTATCACTTAGT+TGG | + | chr2_2:3362563-3362582 | None:intergenic | 25.0% |
! | AACACCAAAAATTATAGTGA+TGG | - | chr2_2:3362753-3362772 | Msa0231160:CDS | 25.0% |
!! | TGAACCATCACTATAATTTT+TGG | + | chr2_2:3362760-3362779 | None:intergenic | 25.0% |
! | GATGGTTCAATTATGTTATT+TGG | - | chr2_2:3362771-3362790 | Msa0231160:CDS | 25.0% |
!! | TTTTCACAATTCTCATATCA+AGG | - | chr2_2:3362821-3362840 | Msa0231160:CDS | 25.0% |
! | TTTCACAATTCTCATATCAA+GGG | - | chr2_2:3362822-3362841 | Msa0231160:CDS | 25.0% |
!!! | ATGCAACTTTGGAATTTTGA+CGG | + | chr2_2:3359984-3360003 | None:intergenic | 30.0% |
TAAACTCTTGAATGCAACTT+TGG | + | chr2_2:3359995-3360014 | None:intergenic | 30.0% | |
AGAGTTTATTATTTCCCACA+AGG | - | chr2_2:3360007-3360026 | Msa0231160:CDS | 30.0% | |
! | AATGGAATTCGTTTGTTAAG+AGG | - | chr2_2:3360473-3360492 | Msa0231160:intron | 30.0% |
! | ATTTTCATGAAAGACTCAAC+GGG | - | chr2_2:3360523-3360542 | Msa0231160:intron | 30.0% |
AAATTGTTTACTATCCTCGA+GGG | - | chr2_2:3360671-3360690 | Msa0231160:intron | 30.0% | |
TCATCTTAACTCTCATTCTA+GGG | + | chr2_2:3360762-3360781 | None:intergenic | 30.0% | |
TTCATCTTAACTCTCATTCT+AGG | + | chr2_2:3360763-3360782 | None:intergenic | 30.0% | |
TGAAGACTGATAAATCTTCA+AGG | - | chr2_2:3360779-3360798 | Msa0231160:intron | 30.0% | |
GTGTTTCATAGCTAGATAAT+TGG | + | chr2_2:3360915-3360934 | None:intergenic | 30.0% | |
TATTAAACGTCTCCTAATGT+CGG | + | chr2_2:3361062-3361081 | None:intergenic | 30.0% | |
ATACTAGATACTATGAAGCA+CGG | + | chr2_2:3361093-3361112 | None:intergenic | 30.0% | |
AACATTAAAAAAAGGAGCGA+CGG | + | chr2_2:3361525-3361544 | None:intergenic | 30.0% | |
CTGTAATAATCTCTCTATGT+GGG | + | chr2_2:3361648-3361667 | None:intergenic | 30.0% | |
TCTGTAATAATCTCTCTATG+TGG | + | chr2_2:3361649-3361668 | None:intergenic | 30.0% | |
!! | AAAACAAACGAGGTTTTATG+AGG | + | chr2_2:3361678-3361697 | None:intergenic | 30.0% |
! | TCATAAAACCTCGTTTGTTT+TGG | - | chr2_2:3361677-3361696 | Msa0231160:intron | 30.0% |
! | AATCATTCCTCTTTTCATTG+TGG | + | chr2_2:3361704-3361723 | None:intergenic | 30.0% |
CTGTTAACCGTATAAAAAGA+GGG | + | chr2_2:3361753-3361772 | None:intergenic | 30.0% | |
ACTGTTAACCGTATAAAAAG+AGG | + | chr2_2:3361754-3361773 | None:intergenic | 30.0% | |
TGGTTGTATGAAGGAATTAT+AGG | + | chr2_2:3361827-3361846 | None:intergenic | 30.0% | |
AATTCCTTCATACAACCATA+CGG | - | chr2_2:3361829-3361848 | Msa0231160:intron | 30.0% | |
!! | AATAAGCATTGATGTCAAAC+GGG | + | chr2_2:3361911-3361930 | None:intergenic | 30.0% |
!! | CAATAAGCATTGATGTCAAA+CGG | + | chr2_2:3361912-3361931 | None:intergenic | 30.0% |
GTTTGACATCAATGCTTATT+GGG | - | chr2_2:3361911-3361930 | Msa0231160:intron | 30.0% | |
ACATTGAGACTTATCCTATA+GGG | + | chr2_2:3362016-3362035 | None:intergenic | 30.0% | |
TACATTGAGACTTATCCTAT+AGG | + | chr2_2:3362017-3362036 | None:intergenic | 30.0% | |
! | GTCGGTTAATTTACCAATTT+TGG | - | chr2_2:3362068-3362087 | Msa0231160:CDS | 30.0% |
TAAATAGCAACTCCCAAAAT+TGG | + | chr2_2:3362084-3362103 | None:intergenic | 30.0% | |
!!! | AATTTTTTTGTTTGGGGGAA+TGG | + | chr2_2:3362519-3362538 | None:intergenic | 30.0% |
TTTGAATGAGATCACTTCAA+CGG | - | chr2_2:3362611-3362630 | Msa0231160:CDS | 30.0% | |
GGTGATACTTTATCATGTAT+AGG | + | chr2_2:3362675-3362694 | None:intergenic | 30.0% | |
TTCAAAATAATATGGCTGTG+AGG | + | chr2_2:3362696-3362715 | None:intergenic | 30.0% | |
CAGAGGAGTTCAAAATAATA+TGG | + | chr2_2:3362704-3362723 | None:intergenic | 30.0% | |
TTGTGAAAATTGCTTACATG+AGG | + | chr2_2:3362810-3362829 | None:intergenic | 30.0% | |
! | TTGTAGAAAAGAGTGTGTGT+GGG | + | chr2_2:3360074-3360093 | None:intergenic | 35.0% |
! | TTTGTAGAAAAGAGTGTGTG+TGG | + | chr2_2:3360075-3360094 | None:intergenic | 35.0% |
!!! | CTTCTTTAGGGTTTTCAAGA+TGG | + | chr2_2:3360207-3360226 | None:intergenic | 35.0% |
TCTTGAAAACCCTAAAGAAG+AGG | - | chr2_2:3360207-3360226 | Msa0231160:CDS | 35.0% | |
CAAAAGAAACAACTTCATCG+CGG | + | chr2_2:3360249-3360268 | None:intergenic | 35.0% | |
GTTCTGATGTTAACAATGCT+CGG | - | chr2_2:3360284-3360303 | Msa0231160:CDS | 35.0% | |
TCAACGGGAAAGTTATTTGT+TGG | - | chr2_2:3360538-3360557 | Msa0231160:intron | 35.0% | |
CAACGGGAAAGTTATTTGTT+GGG | - | chr2_2:3360539-3360558 | Msa0231160:intron | 35.0% | |
GAAATTGTTTACTATCCTCG+AGG | - | chr2_2:3360670-3360689 | Msa0231160:intron | 35.0% | |
AATTGTTTACTATCCTCGAG+GGG | - | chr2_2:3360672-3360691 | Msa0231160:intron | 35.0% | |
! | TGATTGGTGTGATTTTGTAG+TGG | - | chr2_2:3360696-3360715 | Msa0231160:intron | 35.0% |
TAGAGATTGTCCCTTGATAT+GGG | + | chr2_2:3360807-3360826 | None:intergenic | 35.0% | |
ATAGAGATTGTCCCTTGATA+TGG | + | chr2_2:3360808-3360827 | None:intergenic | 35.0% | |
TTCAGTAGAATCGTATGTGT+CGG | - | chr2_2:3361016-3361035 | Msa0231160:intron | 35.0% | |
! | TGCAATATCGATTGGTGTAA+TGG | + | chr2_2:3361422-3361441 | None:intergenic | 35.0% |
! | TTTTGGTCCACAATGAAAAG+AGG | - | chr2_2:3361694-3361713 | Msa0231160:intron | 35.0% |
! | GTTCACACCCTCTTTTTATA+CGG | - | chr2_2:3361743-3361762 | Msa0231160:intron | 35.0% |
! | ACAACCATACGGTGTTAAAT+TGG | - | chr2_2:3361840-3361859 | Msa0231160:intron | 35.0% |
ACAACCAATTTAACACCGTA+TGG | + | chr2_2:3361847-3361866 | None:intergenic | 35.0% | |
! | TGTCAAACGGGTATTTTCAT+TGG | + | chr2_2:3361899-3361918 | None:intergenic | 35.0% |
CGTTTGACATCAATGCTTAT+TGG | - | chr2_2:3361910-3361929 | Msa0231160:intron | 35.0% | |
TCAAAGAGCAGTAACTAACT+AGG | + | chr2_2:3361960-3361979 | None:intergenic | 35.0% | |
GAGAACAAGTATGTTACTGT+CGG | - | chr2_2:3362050-3362069 | Msa0231160:CDS | 35.0% | |
TGAACAATATTGGTGCATTG+TGG | - | chr2_2:3362306-3362325 | Msa0231160:CDS | 35.0% | |
! | TTGGGATGAATTTCAAGTCT+CGG | - | chr2_2:3362431-3362450 | Msa0231160:CDS | 35.0% |
TGCCCAACTAAGTGATAAAA+AGG | - | chr2_2:3362557-3362576 | Msa0231160:CDS | 35.0% | |
!!! | AAGAAGGAGAAGCGTTTTCT+AGG | + | chr2_2:3360036-3360055 | None:intergenic | 40.0% |
! | GTAATGGAGGAAGAAGAAGA+AGG | + | chr2_2:3360052-3360071 | None:intergenic | 40.0% |
! | AAAAGAGTGTGTGTGGGTAA+TGG | + | chr2_2:3360068-3360087 | None:intergenic | 40.0% |
! | AGATGGACATCGTTGGTTAT+TGG | + | chr2_2:3360190-3360209 | None:intergenic | 40.0% |
!! | GTTTTCAAGATGGACATCGT+TGG | + | chr2_2:3360197-3360216 | None:intergenic | 40.0% |
GATTGGCAACCTCTTCTTTA+GGG | + | chr2_2:3360219-3360238 | None:intergenic | 40.0% | |
AGATTGGCAACCTCTTCTTT+AGG | + | chr2_2:3360220-3360239 | None:intergenic | 40.0% | |
TGAAACTTCACCATGAACGT+CGG | + | chr2_2:3360398-3360417 | None:intergenic | 40.0% | |
TGTTAAGAGGAAGAAACTCG+TGG | - | chr2_2:3360486-3360505 | Msa0231160:intron | 40.0% | |
! | AGTTATTTGTTGGGATTCGC+AGG | - | chr2_2:3360548-3360567 | Msa0231160:intron | 40.0% |
!! | AGTAATGGAGGCATTGAAGT+TGG | - | chr2_2:3360627-3360646 | Msa0231160:intron | 40.0% |
!! | TGGTGTGATTTTGTAGTGGA+TGG | - | chr2_2:3360700-3360719 | Msa0231160:intron | 40.0% |
TCTTCAAGGATCCCATATCA+AGG | - | chr2_2:3360793-3360812 | Msa0231160:intron | 40.0% | |
CTTCAAGGATCCCATATCAA+GGG | - | chr2_2:3360794-3360813 | Msa0231160:intron | 40.0% | |
TAATTTATGGCGCATGCTTC+AGG | - | chr2_2:3360843-3360862 | Msa0231160:intron | 40.0% | |
AACACACTCACAAACACACA+CGG | - | chr2_2:3360930-3360949 | Msa0231160:intron | 40.0% | |
! | TACCTACCTTTTTGCAAGAG+TGG | - | chr2_2:3361353-3361372 | Msa0231160:intron | 40.0% |
! | ACCTACCTTTTTGCAAGAGT+GGG | - | chr2_2:3361354-3361373 | Msa0231160:intron | 40.0% |
!! | CAAACGAGGTTTTATGAGGA+AGG | + | chr2_2:3361674-3361693 | None:intergenic | 40.0% |
ATTGTGGACCAAAACAAACG+AGG | + | chr2_2:3361688-3361707 | None:intergenic | 40.0% | |
AACACCGTATGGTTGTATGA+AGG | + | chr2_2:3361836-3361855 | None:intergenic | 40.0% | |
CTAACTAGGATCGTCTCTAA+TGG | + | chr2_2:3361946-3361965 | None:intergenic | 40.0% | |
TATATTGCTTCGTGCCCTAT+AGG | - | chr2_2:3361999-3362018 | Msa0231160:CDS | 40.0% | |
TATTGGTGCATTGTGGCTAA+TGG | - | chr2_2:3362313-3362332 | Msa0231160:CDS | 40.0% | |
! | TGCATTGTGGCTAATGGTTT+TGG | - | chr2_2:3362319-3362338 | Msa0231160:CDS | 40.0% |
! | GCATTGTGGCTAATGGTTTT+GGG | - | chr2_2:3362320-3362339 | Msa0231160:CDS | 40.0% |
AATGAGATCACTTCAACGGA+AGG | - | chr2_2:3362615-3362634 | Msa0231160:CDS | 40.0% | |
ATGAGATCACTTCAACGGAA+GGG | - | chr2_2:3362616-3362635 | Msa0231160:CDS | 40.0% | |
TCTCATATCAAGGGAGATGA+TGG | - | chr2_2:3362831-3362850 | Msa0231160:CDS | 40.0% | |
GCACATGTGTGCCAAATTTC+TGG | + | chr2_2:3359953-3359972 | None:intergenic | 45.0% | |
!!! | CTTTGGAATTTTGACGGCAG+CGG | + | chr2_2:3359978-3359997 | None:intergenic | 45.0% |
! | CGTTTTCTAGGTGACCTTGT+GGG | + | chr2_2:3360024-3360043 | None:intergenic | 45.0% |
GAGACGATACAAGGAGTGAA+AGG | + | chr2_2:3360106-3360125 | None:intergenic | 45.0% | |
TCAACAGCTGAGACGATACA+AGG | + | chr2_2:3360115-3360134 | None:intergenic | 45.0% | |
TTCATCGCGGTTGTTGAGAT+TGG | + | chr2_2:3360236-3360255 | None:intergenic | 45.0% | |
ACATTATCGGCACAAAAGCG+AGG | + | chr2_2:3360322-3360341 | None:intergenic | 45.0% | |
! | AAGTTTTACCATGTCTGCCG+CGG | - | chr2_2:3360418-3360437 | Msa0231160:intron | 45.0% |
! | GAAGAAGGATGAGTTGGAGA+AGG | - | chr2_2:3360603-3360622 | Msa0231160:intron | 45.0% |
! | TGAGTTGGAGAAGGCAGTAA+TGG | - | chr2_2:3360612-3360631 | Msa0231160:intron | 45.0% |
!! | AATGGAGGCATTGAAGTTGG+CGG | - | chr2_2:3360630-3360649 | Msa0231160:intron | 45.0% |
TCCTAATGTCGGACACACAT+CGG | + | chr2_2:3361051-3361070 | None:intergenic | 45.0% | |
! | CCTACCTTTTTGCAAGAGTG+GGG | - | chr2_2:3361355-3361374 | Msa0231160:intron | 45.0% |
ACATCCCCACTCTTGCAAAA+AGG | + | chr2_2:3361362-3361381 | None:intergenic | 45.0% | |
! | TTTTTGCAAGAGTGGGGATG+TGG | - | chr2_2:3361361-3361380 | Msa0231160:intron | 45.0% |
AAATAACCTCAACCCACCAC+GGG | + | chr2_2:3362476-3362495 | None:intergenic | 45.0% | |
GAAATAACCTCAACCCACCA+CGG | + | chr2_2:3362477-3362496 | None:intergenic | 45.0% | |
CGAAGGAAACTTTGTCTCAG+AGG | + | chr2_2:3362721-3362740 | None:intergenic | 45.0% | |
GTGTTGCAATTGTGAGTCGA+AGG | + | chr2_2:3362738-3362757 | None:intergenic | 45.0% | |
! | GATGATGGCTATAAGAGCTG+CGG | - | chr2_2:3362846-3362865 | Msa0231160:CDS | 45.0% |
!!! | ATATTTTAATATATCAATAA+TGG | - | chr2_2:3361618-3361637 | Msa0231160:intron | 5.0% |
!!! | TATTTTAATATATCAATAAT+GGG | - | chr2_2:3361619-3361638 | Msa0231160:intron | 5.0% |
! | ATTTCTGGACGCACATGCGA+TGG | + | chr2_2:3359938-3359957 | None:intergenic | 50.0% |
CGCATGTGCGTCCAGAAATT+TGG | - | chr2_2:3359939-3359958 | Msa0231160:CDS | 50.0% | |
! | GCGTTTTCTAGGTGACCTTG+TGG | + | chr2_2:3360025-3360044 | None:intergenic | 50.0% |
! | AGAGTGTGTGTGGGTAATGG+AGG | + | chr2_2:3360065-3360084 | None:intergenic | 50.0% |
ACAAAGACCTCATCCGTGTG+AGG | + | chr2_2:3360151-3360170 | None:intergenic | 50.0% | |
AAGCCGCGGGAAGACATTAT+CGG | + | chr2_2:3360335-3360354 | None:intergenic | 50.0% | |
!! | CAGGTGTTGAGACGAGGATT+CGG | + | chr2_2:3360368-3360387 | None:intergenic | 50.0% |
!! | AACGAACAGGTGTTGAGACG+AGG | + | chr2_2:3360374-3360393 | None:intergenic | 50.0% |
CATGAACGTCGGTAACGAAC+AGG | + | chr2_2:3360387-3360406 | None:intergenic | 50.0% | |
CTGTTCGTTACCGACGTTCA+TGG | - | chr2_2:3360385-3360404 | Msa0231160:intron | 50.0% | |
! | AGTTTTACCATGTCTGCCGC+GGG | - | chr2_2:3360419-3360438 | Msa0231160:intron | 50.0% |
TGTTTCTCTTGGGAAACCCG+CGG | + | chr2_2:3360438-3360457 | None:intergenic | 50.0% | |
AAGAGGAAGAAACTCGTGGC+TGG | - | chr2_2:3360490-3360509 | Msa0231160:intron | 50.0% | |
!! | GAACACGCAGTTTGTTGCAG+CGG | - | chr2_2:3360570-3360589 | Msa0231160:intron | 50.0% |
GGAGCAGAAGAAGGATGAGT+TGG | - | chr2_2:3360597-3360616 | Msa0231160:intron | 50.0% | |
GTTGGAGAAGGCAGTAATGG+AGG | - | chr2_2:3360615-3360634 | Msa0231160:intron | 50.0% | |
GAAGTTGGCGGAAGAGAACA+AGG | - | chr2_2:3360642-3360661 | Msa0231160:intron | 50.0% | |
ACTATCCTCGAGGGGATGAT+TGG | - | chr2_2:3360680-3360699 | Msa0231160:intron | 50.0% | |
ACCGATGTGTGTCCGACATT+AGG | - | chr2_2:3361047-3361066 | Msa0231160:intron | 50.0% | |
CCCCACTCTTGCAAAAAGGT+AGG | + | chr2_2:3361358-3361377 | None:intergenic | 50.0% | |
TTTGTTTGGGGGAATGGCGT+CGG | + | chr2_2:3362513-3362532 | None:intergenic | 50.0% | |
TCTCCTTGCCGATCCTCACA+CGG | - | chr2_2:3360135-3360154 | Msa0231160:CDS | 55.0% | |
GACCTCATCCGTGTGAGGAT+CGG | + | chr2_2:3360146-3360165 | None:intergenic | 55.0% | |
CGGCACAAAAGCGAGGTATG+TGG | + | chr2_2:3360315-3360334 | None:intergenic | 55.0% | |
! | GTGCCGATAATGTCTTCCCG+CGG | - | chr2_2:3360329-3360348 | Msa0231160:CDS | 55.0% |
TCACACCAATCATCCCCTCG+AGG | + | chr2_2:3360688-3360707 | None:intergenic | 55.0% | |
TTCCAAGACGAGTCAACCCG+TGG | - | chr2_2:3362457-3362476 | Msa0231160:CDS | 55.0% | |
AAGACGAGTCAACCCGTGGT+GGG | - | chr2_2:3362461-3362480 | Msa0231160:CDS | 55.0% | |
CATCCGTGTGAGGATCGGCA+AGG | + | chr2_2:3360141-3360160 | None:intergenic | 60.0% | |
TGCCGATCCTCACACGGATG+AGG | - | chr2_2:3360141-3360160 | Msa0231160:CDS | 60.0% | |
GAGACGAGGATTCGGCCTCT+AGG | + | chr2_2:3360360-3360379 | None:intergenic | 60.0% | |
!! | CACGCAGTTTGTTGCAGCGG+CGG | - | chr2_2:3360573-3360592 | Msa0231160:intron | 60.0% |
!! | CACCACGGGTTGACTCGTCT+TGG | + | chr2_2:3362462-3362481 | None:intergenic | 60.0% |
CAAGACGAGTCAACCCGTGG+TGG | - | chr2_2:3362460-3362479 | Msa0231160:CDS | 60.0% | |
!! | AGTCAACCCGTGGTGGGTTG+AGG | - | chr2_2:3362467-3362486 | Msa0231160:CDS | 60.0% |
CTTCCCGCGGCTTGACCTAG+AGG | - | chr2_2:3360342-3360361 | Msa0231160:CDS | 65.0% | |
TCGGCCTCTAGGTCAAGCCG+CGG | + | chr2_2:3360349-3360368 | None:intergenic | 65.0% | |
TGGGAAACCCGCGGCAGACA+TGG | + | chr2_2:3360429-3360448 | None:intergenic | 65.0% | |
!! | GCAGTTTGTTGCAGCGGCGG+CGG | - | chr2_2:3360576-3360595 | Msa0231160:intron | 65.0% |
CGGCCTCTAGGTCAAGCCGC+GGG | + | chr2_2:3360348-3360367 | None:intergenic | 70.0% | |
AGCGGCGGCGGAGCAGAAGA+AGG | - | chr2_2:3360588-3360607 | Msa0231160:intron | 70.0% | |
! | TGGGGGAATGGCGTCGGAGC+AGG | + | chr2_2:3362507-3362526 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_2 | gene | 3359917 | 3362881 | 3359917 | ID=Msa0231160;Name=Msa0231160 |
chr2_2 | mRNA | 3359917 | 3362881 | 3359917 | ID=Msa0231160-mRNA-1;Parent=Msa0231160;Name=Msa0231160-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|467 |
chr2_2 | exon | 3361934 | 3362881 | 3361934 | ID=Msa0231160-mRNA-1:exon:1283;Parent=Msa0231160-mRNA-1 |
chr2_2 | exon | 3359917 | 3360372 | 3359917 | ID=Msa0231160-mRNA-1:exon:1282;Parent=Msa0231160-mRNA-1 |
chr2_2 | CDS | 3361934 | 3362881 | 3361934 | ID=Msa0231160-mRNA-1:cds;Parent=Msa0231160-mRNA-1 |
chr2_2 | CDS | 3359917 | 3360372 | 3359917 | ID=Msa0231160-mRNA-1:cds;Parent=Msa0231160-mRNA-1 |
Gene Sequence |
Protein sequence |