AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0231220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0231220 MtrunA17_Chr2g0277531 88.785 321 28 4 1 316 1 318 0.0 568
Msa0231220 MtrunA17_Chr2g0277461 72.703 370 86 8 10 369 4 368 0.0 519
Msa0231220 MtrunA17_Chr5g0424931 46.552 406 164 13 13 375 13 408 5.39e-100 306
Msa0231220 MtrunA17_Chr1g0178011 47.170 371 170 11 12 365 5 366 3.53e-96 294
Msa0231220 MtrunA17_Chr5g0417281 44.385 374 190 9 10 372 2 368 6.29e-96 295
Msa0231220 MtrunA17_Chr5g0436761 45.067 375 186 11 11 372 4 371 1.07e-85 267
Msa0231220 MtrunA17_Chr2g0289221 48.276 319 141 11 12 316 13 321 1.40e-83 258
Msa0231220 MtrunA17_Chr5g0424801 41.351 370 182 13 13 362 6 360 1.46e-82 256
Msa0231220 MtrunA17_Chr3g0115271 39.614 414 184 13 14 373 14 415 1.78e-81 260
Msa0231220 MtrunA17_Chr5g0425261 41.600 375 174 14 13 362 6 360 5.36e-81 252
Msa0231220 MtrunA17_Chr5g0424741 41.063 414 177 13 12 363 5 413 6.34e-81 256
Msa0231220 MtrunA17_Chr5g0417211 46.082 319 151 10 11 316 4 314 3.47e-78 246
Msa0231220 MtrunA17_Chr2g0326761 35.500 400 187 14 16 355 8 396 3.17e-64 217
Msa0231220 MtrunA17_Chr1g0181211 34.367 387 183 11 16 339 24 402 1.71e-61 209
Msa0231220 MtrunA17_Chr4g0028971 34.783 414 191 15 9 355 2 403 4.40e-61 208
Msa0231220 MtrunA17_Chr1g0199681 34.586 399 191 13 19 358 94 481 5.59e-58 200
Msa0231220 MtrunA17_Chr5g0419861 80.556 108 19 1 64 169 16 123 8.60e-55 176
Msa0231220 MtrunA17_Chr7g0264171 31.796 412 203 15 16 358 28 430 6.11e-51 179
Msa0231220 MtrunA17_Chr5g0425661 45.729 199 97 4 19 213 37 228 3.82e-48 163
Msa0231220 MtrunA17_Chr7g0264161 36.246 309 167 11 29 316 2 301 6.44e-48 164
Msa0231220 MtrunA17_Chr4g0070181 32.378 349 199 12 16 338 20 357 1.85e-41 155
Msa0231220 MtrunA17_Chr4g0009751 30.601 366 211 12 19 361 19 364 4.48e-40 150
Msa0231220 MtrunA17_Chr2g0276781 30.769 364 219 13 16 355 20 374 6.74e-40 150
Msa0231220 MtrunA17_Chr1g0156321 30.435 345 208 10 16 336 40 376 6.82e-39 147
Msa0231220 MtrunA17_Chr2g0282961 28.647 377 223 12 19 363 53 415 7.47e-39 146
Msa0231220 MtrunA17_Chr2g0285461 30.199 351 222 8 19 349 23 370 1.69e-38 146
Msa0231220 MtrunA17_Chr2g0301251 31.503 346 206 11 16 338 20 357 2.13e-38 146
Msa0231220 MtrunA17_Chr8g0385791 31.594 345 197 13 19 336 59 391 2.51e-38 146
Msa0231220 MtrunA17_Chr8g0376771 30.769 351 219 9 19 349 23 369 3.90e-38 145
Msa0231220 MtrunA17_Chr8g0389081 30.857 350 207 11 16 339 29 369 6.16e-38 145
Msa0231220 MtrunA17_Chr5g0433301 28.809 361 228 10 2 339 7 361 1.25e-37 144
Msa0231220 MtrunA17_Chr3g0109391 29.143 350 213 10 16 339 23 363 8.14e-37 142
Msa0231220 MtrunA17_Chr8g0346711 28.767 365 222 11 16 360 26 372 2.27e-35 137
Msa0231220 MtrunA17_Chr4g0046371 29.268 410 223 16 14 375 33 423 1.66e-34 134
Msa0231220 MtrunA17_Chr2g0326281 31.347 386 208 13 19 356 56 432 3.21e-34 134
Msa0231220 MtrunA17_Chr7g0239061 30.435 345 205 12 16 336 11 344 8.90e-34 132
Msa0231220 MtrunA17_Chr4g0029671 30.114 352 203 13 19 336 54 396 3.25e-30 122
Msa0231220 MtrunA17_Chr5g0425651 49.180 122 51 5 238 349 1 121 1.74e-24 97.1
Msa0231220 MtrunA17_Chr5g0424791 43.151 146 75 3 73 218 14 151 1.87e-24 97.8
Msa0231220 MtrunA17_Chr8g0356211 25.893 224 136 8 135 336 5 220 4.44e-14 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0231220 AT1G77850.1 36.203 395 191 11 15 358 15 399 3.39e-70 231
Msa0231220 AT1G77850.2 36.203 395 191 11 15 358 15 399 3.49e-70 231
Msa0231220 AT4G30080.1 35.263 380 181 10 16 339 16 386 2.46e-61 209
Msa0231220 AT2G28350.2 33.735 415 196 15 11 358 2 404 2.16e-57 198
Msa0231220 AT2G28350.1 33.735 415 196 15 11 358 2 404 3.19e-57 198
Msa0231220 AT4G23980.2 31.378 341 209 9 15 336 8 342 1.96e-44 162
Msa0231220 AT4G23980.1 31.378 341 209 9 15 336 8 342 2.41e-44 162
Msa0231220 AT1G34390.1 32.153 367 210 13 14 357 22 372 1.90e-42 156
Msa0231220 AT1G35540.1 32.240 366 213 13 14 357 22 374 1.91e-42 156
Msa0231220 AT2G33860.1 32.277 347 194 11 19 336 54 388 5.57e-42 155
Msa0231220 AT1G34310.1 32.558 344 198 12 14 336 22 352 6.56e-42 155
Msa0231220 AT1G35520.1 32.065 368 211 13 14 357 22 374 9.50e-42 154
Msa0231220 AT2G46530.3 29.333 375 236 10 15 370 38 402 4.46e-40 150
Msa0231220 AT2G46530.1 29.333 375 236 10 15 370 17 381 4.87e-40 150
Msa0231220 AT1G35240.1 30.685 365 220 12 14 357 22 374 5.50e-40 149
Msa0231220 AT5G20730.3 31.429 350 204 11 15 338 20 359 5.79e-39 148
Msa0231220 AT5G20730.1 31.429 350 204 11 15 338 20 359 6.04e-39 148
Msa0231220 AT5G37020.2 29.363 361 224 11 2 339 7 359 9.36e-39 147
Msa0231220 AT5G37020.1 29.363 361 224 11 2 339 7 359 1.04e-38 147
Msa0231220 AT1G19850.1 30.685 365 211 11 1 336 37 388 1.18e-38 147
Msa0231220 AT1G19850.2 30.685 365 211 11 1 336 26 377 1.43e-38 147
Msa0231220 AT5G20730.2 31.429 350 203 12 15 338 20 358 2.36e-38 147
Msa0231220 AT1G34410.1 30.685 365 220 12 14 357 22 374 4.91e-38 144
Msa0231220 AT3G61830.1 30.725 345 205 12 15 336 21 354 9.12e-38 143
Msa0231220 AT5G62000.4 30.423 378 222 15 16 364 58 423 1.76e-37 144
Msa0231220 AT5G62000.2 30.423 378 222 15 16 364 58 423 2.08e-37 144
Msa0231220 AT5G62000.5 30.423 378 222 15 16 364 58 423 2.08e-37 144
Msa0231220 AT5G62000.3 30.423 378 222 15 16 364 58 423 2.08e-37 144
Msa0231220 AT5G62000.1 30.423 378 222 15 16 364 58 423 2.08e-37 144
Msa0231220 AT1G30330.1 30.641 359 216 10 16 349 20 370 2.55e-37 144
Msa0231220 AT1G30330.3 30.641 359 216 10 16 349 22 372 2.61e-37 144
Msa0231220 AT1G30330.2 30.641 359 216 10 16 349 22 372 2.61e-37 144
Msa0231220 AT1G19220.1 30.659 349 205 12 16 338 20 357 5.01e-37 143
Msa0231220 AT1G59750.2 28.689 366 218 12 19 355 22 373 4.52e-35 136
Msa0231220 AT1G59750.1 28.689 366 218 12 19 355 22 373 4.71e-35 136
Msa0231220 AT1G59750.3 28.689 366 218 12 19 355 22 373 4.71e-35 136
Msa0231220 AT1G59750.4 28.689 366 218 12 19 355 22 373 5.32e-35 136
Msa0231220 AT5G60450.2 29.111 371 225 12 14 353 36 399 1.37e-34 135
Msa0231220 AT1G34170.1 29.769 346 207 13 14 336 20 352 1.45e-34 133
Msa0231220 AT5G60450.1 28.997 369 224 12 16 353 62 423 3.45e-34 134
Msa0231220 AT1G34170.2 29.762 336 194 13 14 336 20 326 6.86e-33 128
Msa0231220 AT1G34170.3 29.882 338 191 13 14 336 20 326 1.49e-32 128
Msa0231220 AT3G61830.2 30.314 287 174 9 69 336 24 303 3.74e-27 113
Msa0231220 AT1G43950.1 32.258 217 122 7 14 221 22 222 6.71e-27 107
Msa0231220 AT2G33860.2 32.479 234 132 8 125 336 2 231 1.16e-26 110
Msa0231220 AT5G37020.3 30.508 236 141 8 125 339 31 264 4.54e-24 104
Msa0231220 AT2G46530.2 30.112 269 162 9 121 370 33 294 1.82e-22 99.4
Msa0231220 ATMG00940.1 38.843 121 63 6 210 327 44 156 1.19e-12 65.9

Find 100 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATGCAACTTTGGTATT+TGG 0.133681 2_2:-3399899 None:intergenic
TCTCAATATCATAGGTTAAC+TGG 0.218607 2_2:+3401829 Msa0231220:intron
TTCATCTTAACTCTCATTCT+AGG 0.234993 2_2:-3400653 None:intergenic
TATCTCGTACGTCTAATTTA+TGG 0.240815 2_2:+3400723 Msa0231220:CDS
CACCATGGGCTGACTCTTCT+TGG 0.263929 2_2:-3401876 None:intergenic
CTCATCATCGTCGTTGCAAT+TGG 0.314881 2_2:-3400150 None:intergenic
GTAGAGATTGTCCCTTGATA+TGG 0.324016 2_2:-3400698 None:intergenic
AACGACGATGATGAGGTAAT+TGG 0.328138 2_2:+3400158 Msa0231220:CDS
GCTGCTGTTGGTGCTGGTGC+TGG 0.335243 2_2:-3399824 None:intergenic
GTATGCTTGCTTACATTAGT+AGG 0.336336 2_2:-3400203 None:intergenic
GCATCAACATCATTGGTTAT+TGG 0.339316 2_2:-3400101 None:intergenic
TTAACAAACGAACTCCATTC+AGG 0.339363 2_2:-3400377 None:intergenic
CGCATGTCCACCCTCAAATC+TGG 0.363208 2_2:+3399853 Msa0231220:CDS
CAACGGGAAAATTATTTGTT+GGG 0.375166 2_2:+3400447 Msa0231220:CDS
ATGGTTGCTGCTGTTGGTGC+TGG 0.385990 2_2:-3399830 None:intergenic
CAAATCTGGCAGACATTAAC+CGG 0.388348 2_2:+3399867 Msa0231220:CDS
TAAACTCTTGAATGCAACTT+TGG 0.402834 2_2:-3399906 None:intergenic
TCAACGGGAAAATTATTTGT+TGG 0.404341 2_2:+3400446 Msa0231220:CDS
CTGACGTTCATGGTGAAGTC+TGG 0.406535 2_2:+3400303 Msa0231220:CDS
CTCCTCGTCACTGACGTTCA+TGG 0.407231 2_2:+3400293 Msa0231220:CDS
AATGGAGTTCGTTTGTTAAG+AGG 0.407313 2_2:+3400381 Msa0231220:CDS
AGGAATCCCCTTATATGATA+AGG 0.414977 2_2:+3401997 Msa0231220:CDS
TAATTTATGGCGCATGCTAC+AGG 0.422222 2_2:+3400736 Msa0231220:CDS
TGAAGACTCATAAATCTTCA+AGG 0.428391 2_2:+3400672 Msa0231220:CDS
ATTTCCCTCAAACGTGCATC+AGG 0.435910 2_2:+3401909 Msa0231220:CDS
TGAGTTGGAGAAGGCAGTAA+TGG 0.441158 2_2:+3400505 Msa0231220:CDS
ACTATCCTCGAGGTGATGAT+TGG 0.444363 2_2:+3400573 Msa0231220:CDS
GACACAGGCATCAACATCAT+TGG 0.444932 2_2:-3400108 None:intergenic
GTTAATGTCTGCCAGATTTG+AGG 0.445255 2_2:-3399864 None:intergenic
TCATCTTAACTCTCATTCTA+GGG 0.445548 2_2:-3400652 None:intergenic
GATATAAAACACGTTTCTCT+TGG 0.446560 2_2:-3400354 None:intergenic
TGCCCCATTAAGTGATGAAA+AGG 0.448788 2_2:+3401977 Msa0231220:CDS
AGGTAATTGGTTCGTTTACA+AGG 0.453827 2_2:+3400171 Msa0231220:CDS
TGGGAACCTCATGAGGGTCT+TGG 0.457592 2_2:-3400130 None:intergenic
AATTATTTGTTGGGATTCGC+AGG 0.462606 2_2:+3400456 Msa0231220:CDS
GTCGACCTGATGCACGTTTG+AGG 0.464249 2_2:-3401914 None:intergenic
GGATAGTAAACAATTTCAAA+TGG 0.472676 2_2:-3400557 None:intergenic
AGTAATGGAGGCAGTGAAGT+TGG 0.472794 2_2:+3400520 Msa0231220:CDS
TTAATGTCTGCCAGATTTGA+GGG 0.479203 2_2:-3399863 None:intergenic
ATGAATCAATGAAAATTCAA+TGG 0.482116 2_2:+3400627 Msa0231220:CDS
GGAGTGAATGTAAGCATTGG+AGG 0.486006 2_2:-3399970 None:intergenic
TCTCTTGGCAAACCCGTGGC+AGG 0.490609 2_2:-3400339 None:intergenic
TCATCATCGTCGTTGCAATT+GGG 0.492508 2_2:-3400149 None:intergenic
GAAAATATCTTCCCTCCGCT+TGG 0.492876 2_2:+3400251 Msa0231220:CDS
TAGAGATTGTCCCTTGATAT+GGG 0.494859 2_2:-3400697 None:intergenic
CTCAATATCATAGGTTAACT+GGG 0.496428 2_2:+3401830 Msa0231220:intron
CTCATGAGGGTCTTGGACAC+AGG 0.498403 2_2:-3400123 None:intergenic
TATGCTTGCTTACATTAGTA+GGG 0.498565 2_2:-3400202 None:intergenic
TGGTATTTGGACAGCAGTGC+CGG 0.499421 2_2:-3399886 None:intergenic
TGGCAAACCCGTGGCAGGCA+TGG 0.500790 2_2:-3400334 None:intergenic
AAGTTTCACCATGCCTGCCA+CGG 0.506565 2_2:+3400326 Msa0231220:CDS
TCGACCTGATGCACGTTTGA+GGG 0.510461 2_2:-3401913 None:intergenic
TAACAAACGAACTCCATTCA+GGG 0.512751 2_2:-3400376 None:intergenic
TCTTCAAGGATCCCATATCA+AGG 0.512818 2_2:+3400686 Msa0231220:CDS
ATGTAAGCATTGGAGGAGGA+AGG 0.516472 2_2:-3399963 None:intergenic
AGTTTCACCATGCCTGCCAC+GGG 0.517459 2_2:+3400327 Msa0231220:CDS
CATGCGATGGTTGCTGCTGT+TGG 0.533873 2_2:-3399836 None:intergenic
TTGCAATTGGGAACCTCATG+AGG 0.534875 2_2:-3400137 None:intergenic
GGAGGCAGTGAAGTTGGCAG+AGG 0.547497 2_2:+3400526 Msa0231220:CDS
TATCTTCCCTCCGCTTGGCA+TGG 0.558368 2_2:+3400256 Msa0231220:CDS
CGCCGATCCTCACACTGATG+AGG 0.560935 2_2:+3400055 Msa0231220:CDS
AAGGGAGTGAATGTAAGCAT+TGG 0.561164 2_2:-3399973 None:intergenic
CTGGTGCTGGTTGAGAGACA+TGG 0.567756 2_2:-3399811 None:intergenic
GCATATTCTAAGTGGCCTTG+TGG 0.574209 2_2:-3399936 None:intergenic
GTGAATGTAAGCATTGGAGG+AGG 0.588009 2_2:-3399967 None:intergenic
GTTGGAGAAGGCAGTAATGG+AGG 0.592416 2_2:+3400508 Msa0231220:CDS
TGGGATTCGCAGGAAAGCCG+CGG 0.593939 2_2:+3400466 Msa0231220:CDS
GGAGCAAAAGAAAGATGAGT+TGG 0.594103 2_2:+3400490 Msa0231220:CDS
GACCTCATCAGTGTGAGGAT+CGG 0.595759 2_2:-3400057 None:intergenic
GAAATAAGTTCAACCCACCA+TGG 0.601634 2_2:-3401891 None:intergenic
AAAGAAAGATGAGTTGGAGA+AGG 0.605720 2_2:+3400496 Msa0231220:CDS
AAATCTCCATGCCAAGCGGA+GGG 0.609417 2_2:-3400262 None:intergenic
CTTCAAGGATCCCATATCAA+GGG 0.609531 2_2:+3400687 Msa0231220:CDS
GAGATGATACAGATAGTGAA+AGG 0.609814 2_2:-3400017 None:intergenic
AAATAAGTTCAACCCACCAT+GGG 0.611317 2_2:-3401890 None:intergenic
GAAATCTCCATGCCAAGCGG+AGG 0.617181 2_2:-3400263 None:intergenic
AAGAAGAGTCAGCCCATGGT+GGG 0.617483 2_2:+3401878 Msa0231220:CDS
CACCATGAACGTCAGTGACG+AGG 0.617900 2_2:-3400295 None:intergenic
CGTTTCTCTTGGCAAACCCG+TGG 0.618791 2_2:-3400343 None:intergenic
AAAACGTTGAAGATCATGAA+GGG 0.620045 2_2:-3399991 None:intergenic
CACTATCTGTATCATCTCCG+CGG 0.622122 2_2:+3400022 Msa0231220:CDS
AAGGAGAAGCATATTCTAAG+TGG 0.626940 2_2:-3399944 None:intergenic
GAAAACGTTGAAGATCATGA+AGG 0.628457 2_2:-3399992 None:intergenic
CAATTGCAACGACGATGATG+AGG 0.630770 2_2:+3400151 Msa0231220:CDS
GAAATTGTTTACTATCCTCG+AGG 0.641156 2_2:+3400563 Msa0231220:CDS
TGCAATTGGGAACCTCATGA+GGG 0.643730 2_2:-3400136 None:intergenic
ATTTGAGGGTGGACATGCGA+TGG 0.643879 2_2:-3399849 None:intergenic
TTCCAAGAAGAGTCAGCCCA+TGG 0.644012 2_2:+3401874 Msa0231220:CDS
ATGCTTGCTTACATTAGTAG+GGG 0.652528 2_2:-3400201 None:intergenic
CAAGAAGAGTCAGCCCATGG+TGG 0.652994 2_2:+3401877 Msa0231220:CDS
CATGAACGTCAGTGACGAGG+AGG 0.677277 2_2:-3400292 None:intergenic
GCGAAGACCTCATCAGTGTG+AGG 0.682334 2_2:-3400062 None:intergenic
ATGTCTGCCAGATTTGAGGG+TGG 0.682807 2_2:-3399860 None:intergenic
ATCGGCGAGGAGATCAACCG+CGG 0.684227 2_2:-3400039 None:intergenic
TGAGAAATCTCCATGCCAAG+CGG 0.686661 2_2:-3400266 None:intergenic
CTGTGTCCAAGACCCTCATG+AGG 0.688345 2_2:+3400124 Msa0231220:CDS
GATTCGCAGGAAAGCCGCGG+CGG 0.692782 2_2:+3400469 Msa0231220:CDS
TCATGCCAATCATCACCTCG+AGG 0.713899 2_2:-3400578 None:intergenic
AAGAGGAAGAAACTCGACGT+CGG 0.718798 2_2:+3400398 Msa0231220:CDS
CATCAGTGTGAGGATCGGCG+AGG 0.752555 2_2:-3400052 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATGATTTTTTTTTTGAA+AGG - chr2_2:3401339-3401358 None:intergenic 10.0%
!!! AAAATGATTTTTTTTTTGAA+AGG - chr2_2:3401339-3401358 None:intergenic 10.0%
!!! TTTCTTCTTCTTTTTTTTTT+TGG + chr2_2:3400764-3400783 Msa0231220:intron 15.0%
!!! AATAATTTTAGAATTACAGT+GGG - chr2_2:3400985-3401004 None:intergenic 15.0%
!!! TAATAATTTTAGAATTACAG+TGG - chr2_2:3400986-3401005 None:intergenic 15.0%
!! ATTATAGTTAAAGTTTATAG+TGG + chr2_2:3401159-3401178 Msa0231220:intron 15.0%
!! ATGATATTGAGATAAAAAAA+GGG - chr2_2:3401821-3401840 None:intergenic 15.0%
!! TATGATATTGAGATAAAAAA+AGG - chr2_2:3401822-3401841 None:intergenic 15.0%
!!! TTTTTTTATCTCAATATCAT+AGG + chr2_2:3401821-3401840 Msa0231220:intron 15.0%
!!! TTTCTTCTTCTTTTTTTTTT+TGG + chr2_2:3400764-3400783 Msa0231220:intron 15.0%
!!! AATAATTTTAGAATTACAGT+GGG - chr2_2:3400985-3401004 None:intergenic 15.0%
!!! TAATAATTTTAGAATTACAG+TGG - chr2_2:3400986-3401005 None:intergenic 15.0%
!! ATTATAGTTAAAGTTTATAG+TGG + chr2_2:3401159-3401178 Msa0231220:intron 15.0%
!! ATGATATTGAGATAAAAAAA+GGG - chr2_2:3401821-3401840 None:intergenic 15.0%
!! TATGATATTGAGATAAAAAA+AGG - chr2_2:3401822-3401841 None:intergenic 15.0%
!!! TTTTTTTATCTCAATATCAT+AGG + chr2_2:3401821-3401840 Msa0231220:intron 15.0%
!! ATGAATCAATGAAAATTCAA+TGG + chr2_2:3400627-3400646 Msa0231220:CDS 20.0%
!! CTAATATTTATGAAGCAATT+AGG - chr2_2:3400888-3400907 None:intergenic 20.0%
!!! TGTCGATTAATTTAGTATTT+TGG + chr2_2:3401028-3401047 Msa0231220:intron 20.0%
!!! GTCGATTAATTTAGTATTTT+GGG + chr2_2:3401029-3401048 Msa0231220:intron 20.0%
!! TAACTACATAGATTAAAACT+TGG - chr2_2:3401189-3401208 None:intergenic 20.0%
!!! AAATACTTTTAATGCAATGT+AGG + chr2_2:3401656-3401675 Msa0231220:intron 20.0%
!!! TTCTTATCGATTAAAAGTAT+TGG - chr2_2:3401697-3401716 None:intergenic 20.0%
!!! TTCTTATCGATTAAAAGTAT+TGG - chr2_2:3401697-3401716 None:intergenic 20.0%
!! ACAAAAACCTTATCATATAA+GGG - chr2_2:3402007-3402026 None:intergenic 20.0%
!! TACAAAAACCTTATCATATA+AGG - chr2_2:3402008-3402027 None:intergenic 20.0%
!! ATGAATCAATGAAAATTCAA+TGG + chr2_2:3400627-3400646 Msa0231220:CDS 20.0%
!! CTAATATTTATGAAGCAATT+AGG - chr2_2:3400888-3400907 None:intergenic 20.0%
!!! TGTCGATTAATTTAGTATTT+TGG + chr2_2:3401028-3401047 Msa0231220:intron 20.0%
!!! GTCGATTAATTTAGTATTTT+GGG + chr2_2:3401029-3401048 Msa0231220:intron 20.0%
!! TAACTACATAGATTAAAACT+TGG - chr2_2:3401189-3401208 None:intergenic 20.0%
!!! AAATACTTTTAATGCAATGT+AGG + chr2_2:3401656-3401675 Msa0231220:intron 20.0%
!!! TTCTTATCGATTAAAAGTAT+TGG - chr2_2:3401697-3401716 None:intergenic 20.0%
!!! TTCTTATCGATTAAAAGTAT+TGG - chr2_2:3401697-3401716 None:intergenic 20.0%
!! ACAAAAACCTTATCATATAA+GGG - chr2_2:3402007-3402026 None:intergenic 20.0%
!! TACAAAAACCTTATCATATA+AGG - chr2_2:3402008-3402027 None:intergenic 20.0%
!! TGTTTTCATGAAAAACTCAA+CGG + chr2_2:3400430-3400449 Msa0231220:CDS 25.0%
! GGATAGTAAACAATTTCAAA+TGG - chr2_2:3400560-3400579 None:intergenic 25.0%
!! TATGAAGTGTCATCTAATTA+TGG - chr2_2:3400832-3400851 None:intergenic 25.0%
! TCATTGTGAAGCAAAATAAA+CGG - chr2_2:3400860-3400879 None:intergenic 25.0%
!! GAACAAAGAGTAGTATTTTA+AGG + chr2_2:3401109-3401128 Msa0231220:intron 25.0%
!!! TTCTAAGTTTTTTAGTTGAG+GGG - chr2_2:3401944-3401963 None:intergenic 25.0%
!!! GTTCTAAGTTTTTTAGTTGA+GGG - chr2_2:3401945-3401964 None:intergenic 25.0%
!!! AGTTCTAAGTTTTTTAGTTG+AGG - chr2_2:3401946-3401965 None:intergenic 25.0%
!! ATTCCTTTTCATCACTTAAT+GGG - chr2_2:3401983-3402002 None:intergenic 25.0%
! CAAAAACCTTATCATATAAG+GGG - chr2_2:3402006-3402025 None:intergenic 25.0%
!! TGTTTTCATGAAAAACTCAA+CGG + chr2_2:3400430-3400449 Msa0231220:CDS 25.0%
! GGATAGTAAACAATTTCAAA+TGG - chr2_2:3400560-3400579 None:intergenic 25.0%
!! TATGAAGTGTCATCTAATTA+TGG - chr2_2:3400832-3400851 None:intergenic 25.0%
! TCATTGTGAAGCAAAATAAA+CGG - chr2_2:3400860-3400879 None:intergenic 25.0%
!! GAACAAAGAGTAGTATTTTA+AGG + chr2_2:3401109-3401128 Msa0231220:intron 25.0%
!!! TTCTAAGTTTTTTAGTTGAG+GGG - chr2_2:3401944-3401963 None:intergenic 25.0%
!!! GTTCTAAGTTTTTTAGTTGA+GGG - chr2_2:3401945-3401964 None:intergenic 25.0%
!!! AGTTCTAAGTTTTTTAGTTG+AGG - chr2_2:3401946-3401965 None:intergenic 25.0%
!! ATTCCTTTTCATCACTTAAT+GGG - chr2_2:3401983-3402002 None:intergenic 25.0%
! CAAAAACCTTATCATATAAG+GGG - chr2_2:3402006-3402025 None:intergenic 25.0%
TTGAATGCAACTTTGGTATT+TGG - chr2_2:3399902-3399921 None:intergenic 30.0%
TAAACTCTTGAATGCAACTT+TGG - chr2_2:3399909-3399928 None:intergenic 30.0%
! AGAGTTTACTATTTTCCACA+AGG + chr2_2:3399921-3399940 Msa0231220:CDS 30.0%
AAAACGTTGAAGATCATGAA+GGG - chr2_2:3399994-3400013 None:intergenic 30.0%
TATGCTTGCTTACATTAGTA+GGG - chr2_2:3400205-3400224 None:intergenic 30.0%
! AGCATACATTTTACATACCT+CGG + chr2_2:3400219-3400238 Msa0231220:CDS 30.0%
GATATAAAACACGTTTCTCT+TGG - chr2_2:3400357-3400376 None:intergenic 30.0%
! GTTTTCATGAAAAACTCAAC+GGG + chr2_2:3400431-3400450 Msa0231220:CDS 30.0%
TCAACGGGAAAATTATTTGT+TGG + chr2_2:3400446-3400465 Msa0231220:CDS 30.0%
CAACGGGAAAATTATTTGTT+GGG + chr2_2:3400447-3400466 Msa0231220:CDS 30.0%
TCATCTTAACTCTCATTCTA+GGG - chr2_2:3400655-3400674 None:intergenic 30.0%
TTCATCTTAACTCTCATTCT+AGG - chr2_2:3400656-3400675 None:intergenic 30.0%
TGAAGACTCATAAATCTTCA+AGG + chr2_2:3400672-3400691 Msa0231220:CDS 30.0%
TATCTCGTACGTCTAATTTA+TGG + chr2_2:3400723-3400742 Msa0231220:CDS 30.0%
CATTGTGAAGCAAAATAAAC+GGG - chr2_2:3400859-3400878 None:intergenic 30.0%
TATTAGAGCAAGTATGTTAC+TGG + chr2_2:3401001-3401020 Msa0231220:intron 30.0%
ATGCACTATTGTTCAAATGA+GGG - chr2_2:3401445-3401464 None:intergenic 30.0%
AATGCACTATTGTTCAAATG+AGG - chr2_2:3401446-3401465 None:intergenic 30.0%
TGTAATATCTCATGTATGTG+TGG + chr2_2:3401513-3401532 Msa0231220:intron 30.0%
GTAATATCTCATGTATGTGT+GGG + chr2_2:3401514-3401533 Msa0231220:intron 30.0%
TCTCAATATCATAGGTTAAC+TGG + chr2_2:3401829-3401848 Msa0231220:intron 30.0%
CTCAATATCATAGGTTAACT+GGG + chr2_2:3401830-3401849 Msa0231220:intron 30.0%
! TTCCTTTTCATCACTTAATG+GGG - chr2_2:3401982-3402001 None:intergenic 30.0%
! GATTCCTTTTCATCACTTAA+TGG - chr2_2:3401984-3402003 None:intergenic 30.0%
TTGAATGCAACTTTGGTATT+TGG - chr2_2:3399902-3399921 None:intergenic 30.0%
TAAACTCTTGAATGCAACTT+TGG - chr2_2:3399909-3399928 None:intergenic 30.0%
! AGAGTTTACTATTTTCCACA+AGG + chr2_2:3399921-3399940 Msa0231220:CDS 30.0%
AAAACGTTGAAGATCATGAA+GGG - chr2_2:3399994-3400013 None:intergenic 30.0%
TATGCTTGCTTACATTAGTA+GGG - chr2_2:3400205-3400224 None:intergenic 30.0%
! AGCATACATTTTACATACCT+CGG + chr2_2:3400219-3400238 Msa0231220:CDS 30.0%
GATATAAAACACGTTTCTCT+TGG - chr2_2:3400357-3400376 None:intergenic 30.0%
! GTTTTCATGAAAAACTCAAC+GGG + chr2_2:3400431-3400450 Msa0231220:CDS 30.0%
TCAACGGGAAAATTATTTGT+TGG + chr2_2:3400446-3400465 Msa0231220:CDS 30.0%
CAACGGGAAAATTATTTGTT+GGG + chr2_2:3400447-3400466 Msa0231220:CDS 30.0%
TCATCTTAACTCTCATTCTA+GGG - chr2_2:3400655-3400674 None:intergenic 30.0%
TTCATCTTAACTCTCATTCT+AGG - chr2_2:3400656-3400675 None:intergenic 30.0%
TGAAGACTCATAAATCTTCA+AGG + chr2_2:3400672-3400691 Msa0231220:CDS 30.0%
TATCTCGTACGTCTAATTTA+TGG + chr2_2:3400723-3400742 Msa0231220:CDS 30.0%
CATTGTGAAGCAAAATAAAC+GGG - chr2_2:3400859-3400878 None:intergenic 30.0%
TATTAGAGCAAGTATGTTAC+TGG + chr2_2:3401001-3401020 Msa0231220:intron 30.0%
ATGCACTATTGTTCAAATGA+GGG - chr2_2:3401445-3401464 None:intergenic 30.0%
AATGCACTATTGTTCAAATG+AGG - chr2_2:3401446-3401465 None:intergenic 30.0%
TGTAATATCTCATGTATGTG+TGG + chr2_2:3401513-3401532 Msa0231220:intron 30.0%
GTAATATCTCATGTATGTGT+GGG + chr2_2:3401514-3401533 Msa0231220:intron 30.0%
TCTCAATATCATAGGTTAAC+TGG + chr2_2:3401829-3401848 Msa0231220:intron 30.0%
CTCAATATCATAGGTTAACT+GGG + chr2_2:3401830-3401849 Msa0231220:intron 30.0%
! TTCCTTTTCATCACTTAATG+GGG - chr2_2:3401982-3402001 None:intergenic 30.0%
! GATTCCTTTTCATCACTTAA+TGG - chr2_2:3401984-3402003 None:intergenic 30.0%
TTAATGTCTGCCAGATTTGA+GGG - chr2_2:3399866-3399885 None:intergenic 35.0%
! AAGGAGAAGCATATTCTAAG+TGG - chr2_2:3399947-3399966 None:intergenic 35.0%
GAAAACGTTGAAGATCATGA+AGG - chr2_2:3399995-3400014 None:intergenic 35.0%
GAGATGATACAGATAGTGAA+AGG - chr2_2:3400020-3400039 None:intergenic 35.0%
! GCATCAACATCATTGGTTAT+TGG - chr2_2:3400104-3400123 None:intergenic 35.0%
!! AGGTAATTGGTTCGTTTACA+AGG + chr2_2:3400171-3400190 Msa0231220:CDS 35.0%
ATGCTTGCTTACATTAGTAG+GGG - chr2_2:3400204-3400223 None:intergenic 35.0%
GTATGCTTGCTTACATTAGT+AGG - chr2_2:3400206-3400225 None:intergenic 35.0%
! ATATTTTCAGCACAAAACCG+AGG - chr2_2:3400239-3400258 None:intergenic 35.0%
! ACGTGTTTTATATCCCTGAA+TGG + chr2_2:3400363-3400382 Msa0231220:CDS 35.0%
TAACAAACGAACTCCATTCA+GGG - chr2_2:3400379-3400398 None:intergenic 35.0%
TTAACAAACGAACTCCATTC+AGG - chr2_2:3400380-3400399 None:intergenic 35.0%
! AATGGAGTTCGTTTGTTAAG+AGG + chr2_2:3400381-3400400 Msa0231220:CDS 35.0%
! AATTATTTGTTGGGATTCGC+AGG + chr2_2:3400456-3400475 Msa0231220:CDS 35.0%
! AAAGAAAGATGAGTTGGAGA+AGG + chr2_2:3400496-3400515 Msa0231220:CDS 35.0%
GAAATTGTTTACTATCCTCG+AGG + chr2_2:3400563-3400582 Msa0231220:CDS 35.0%
! TGATTGGCATGATTTTGTAG+TGG + chr2_2:3400589-3400608 Msa0231220:CDS 35.0%
TAGAGATTGTCCCTTGATAT+GGG - chr2_2:3400700-3400719 None:intergenic 35.0%
TATATTACTTTGTCCCCTAC+AGG + chr2_2:3400953-3400972 Msa0231220:intron 35.0%
CAATAGTGCATTGCAGTTAT+TGG + chr2_2:3401454-3401473 Msa0231220:intron 35.0%
!!! TGCATTGCAGTTATTGGTTT+TGG + chr2_2:3401460-3401479 Msa0231220:intron 35.0%
AAATAAGTTCAACCCACCAT+GGG - chr2_2:3401893-3401912 None:intergenic 35.0%
!!! AGTTTTTTAGTTGAGGGGAA+TGG - chr2_2:3401939-3401958 None:intergenic 35.0%
AGGAATCCCCTTATATGATA+AGG + chr2_2:3401997-3402016 Msa0231220:CDS 35.0%
TTAATGTCTGCCAGATTTGA+GGG - chr2_2:3399866-3399885 None:intergenic 35.0%
! AAGGAGAAGCATATTCTAAG+TGG - chr2_2:3399947-3399966 None:intergenic 35.0%
GAAAACGTTGAAGATCATGA+AGG - chr2_2:3399995-3400014 None:intergenic 35.0%
GAGATGATACAGATAGTGAA+AGG - chr2_2:3400020-3400039 None:intergenic 35.0%
! GCATCAACATCATTGGTTAT+TGG - chr2_2:3400104-3400123 None:intergenic 35.0%
!! AGGTAATTGGTTCGTTTACA+AGG + chr2_2:3400171-3400190 Msa0231220:CDS 35.0%
ATGCTTGCTTACATTAGTAG+GGG - chr2_2:3400204-3400223 None:intergenic 35.0%
GTATGCTTGCTTACATTAGT+AGG - chr2_2:3400206-3400225 None:intergenic 35.0%
! ATATTTTCAGCACAAAACCG+AGG - chr2_2:3400239-3400258 None:intergenic 35.0%
! ACGTGTTTTATATCCCTGAA+TGG + chr2_2:3400363-3400382 Msa0231220:CDS 35.0%
TAACAAACGAACTCCATTCA+GGG - chr2_2:3400379-3400398 None:intergenic 35.0%
TTAACAAACGAACTCCATTC+AGG - chr2_2:3400380-3400399 None:intergenic 35.0%
! AATGGAGTTCGTTTGTTAAG+AGG + chr2_2:3400381-3400400 Msa0231220:CDS 35.0%
! AATTATTTGTTGGGATTCGC+AGG + chr2_2:3400456-3400475 Msa0231220:CDS 35.0%
! AAAGAAAGATGAGTTGGAGA+AGG + chr2_2:3400496-3400515 Msa0231220:CDS 35.0%
GAAATTGTTTACTATCCTCG+AGG + chr2_2:3400563-3400582 Msa0231220:CDS 35.0%
! TGATTGGCATGATTTTGTAG+TGG + chr2_2:3400589-3400608 Msa0231220:CDS 35.0%
TAGAGATTGTCCCTTGATAT+GGG - chr2_2:3400700-3400719 None:intergenic 35.0%
TATATTACTTTGTCCCCTAC+AGG + chr2_2:3400953-3400972 Msa0231220:intron 35.0%
CAATAGTGCATTGCAGTTAT+TGG + chr2_2:3401454-3401473 Msa0231220:intron 35.0%
!!! TGCATTGCAGTTATTGGTTT+TGG + chr2_2:3401460-3401479 Msa0231220:intron 35.0%
AAATAAGTTCAACCCACCAT+GGG - chr2_2:3401893-3401912 None:intergenic 35.0%
!!! AGTTTTTTAGTTGAGGGGAA+TGG - chr2_2:3401939-3401958 None:intergenic 35.0%
AGGAATCCCCTTATATGATA+AGG + chr2_2:3401997-3402016 Msa0231220:CDS 35.0%
GTTAATGTCTGCCAGATTTG+AGG - chr2_2:3399867-3399886 None:intergenic 40.0%
CAAATCTGGCAGACATTAAC+CGG + chr2_2:3399867-3399886 Msa0231220:CDS 40.0%
AAGGGAGTGAATGTAAGCAT+TGG - chr2_2:3399976-3399995 None:intergenic 40.0%
TCATCATCGTCGTTGCAATT+GGG - chr2_2:3400152-3400171 None:intergenic 40.0%
AACGACGATGATGAGGTAAT+TGG + chr2_2:3400158-3400177 Msa0231220:CDS 40.0%
GGAGCAAAAGAAAGATGAGT+TGG + chr2_2:3400490-3400509 Msa0231220:CDS 40.0%
TCTTCAAGGATCCCATATCA+AGG + chr2_2:3400686-3400705 Msa0231220:CDS 40.0%
CTTCAAGGATCCCATATCAA+GGG + chr2_2:3400687-3400706 Msa0231220:CDS 40.0%
GTAGAGATTGTCCCTTGATA+TGG - chr2_2:3400701-3400720 None:intergenic 40.0%
TAATTTATGGCGCATGCTAC+AGG + chr2_2:3400736-3400755 Msa0231220:CDS 40.0%
ATATCTCATGTATGTGTGGG+TGG + chr2_2:3401517-3401536 Msa0231220:intron 40.0%
GAAATAAGTTCAACCCACCA+TGG - chr2_2:3401894-3401913 None:intergenic 40.0%
TGCCCCATTAAGTGATGAAA+AGG + chr2_2:3401977-3401996 Msa0231220:CDS 40.0%
GTTAATGTCTGCCAGATTTG+AGG - chr2_2:3399867-3399886 None:intergenic 40.0%
CAAATCTGGCAGACATTAAC+CGG + chr2_2:3399867-3399886 Msa0231220:CDS 40.0%
AAGGGAGTGAATGTAAGCAT+TGG - chr2_2:3399976-3399995 None:intergenic 40.0%
TCATCATCGTCGTTGCAATT+GGG - chr2_2:3400152-3400171 None:intergenic 40.0%
AACGACGATGATGAGGTAAT+TGG + chr2_2:3400158-3400177 Msa0231220:CDS 40.0%
GGAGCAAAAGAAAGATGAGT+TGG + chr2_2:3400490-3400509 Msa0231220:CDS 40.0%
TCTTCAAGGATCCCATATCA+AGG + chr2_2:3400686-3400705 Msa0231220:CDS 40.0%
CTTCAAGGATCCCATATCAA+GGG + chr2_2:3400687-3400706 Msa0231220:CDS 40.0%
GTAGAGATTGTCCCTTGATA+TGG - chr2_2:3400701-3400720 None:intergenic 40.0%
TAATTTATGGCGCATGCTAC+AGG + chr2_2:3400736-3400755 Msa0231220:CDS 40.0%
ATATCTCATGTATGTGTGGG+TGG + chr2_2:3401517-3401536 Msa0231220:intron 40.0%
GAAATAAGTTCAACCCACCA+TGG - chr2_2:3401894-3401913 None:intergenic 40.0%
TGCCCCATTAAGTGATGAAA+AGG + chr2_2:3401977-3401996 Msa0231220:CDS 40.0%
! GCATATTCTAAGTGGCCTTG+TGG - chr2_2:3399939-3399958 None:intergenic 45.0%
!! ATGTAAGCATTGGAGGAGGA+AGG - chr2_2:3399966-3399985 None:intergenic 45.0%
!! GTGAATGTAAGCATTGGAGG+AGG - chr2_2:3399970-3399989 None:intergenic 45.0%
!! GGAGTGAATGTAAGCATTGG+AGG - chr2_2:3399973-3399992 None:intergenic 45.0%
CACTATCTGTATCATCTCCG+CGG + chr2_2:3400022-3400041 Msa0231220:CDS 45.0%
GACACAGGCATCAACATCAT+TGG - chr2_2:3400111-3400130 None:intergenic 45.0%
TGCAATTGGGAACCTCATGA+GGG - chr2_2:3400139-3400158 None:intergenic 45.0%
TTGCAATTGGGAACCTCATG+AGG - chr2_2:3400140-3400159 None:intergenic 45.0%
CTCATCATCGTCGTTGCAAT+TGG - chr2_2:3400153-3400172 None:intergenic 45.0%
CAATTGCAACGACGATGATG+AGG + chr2_2:3400151-3400170 Msa0231220:CDS 45.0%
GAAAATATCTTCCCTCCGCT+TGG + chr2_2:3400251-3400270 Msa0231220:CDS 45.0%
TGAGAAATCTCCATGCCAAG+CGG - chr2_2:3400269-3400288 None:intergenic 45.0%
AAGAGGAAGAAACTCGACGT+CGG + chr2_2:3400398-3400417 Msa0231220:CDS 45.0%
! TGAGTTGGAGAAGGCAGTAA+TGG + chr2_2:3400505-3400524 Msa0231220:CDS 45.0%
! AGTAATGGAGGCAGTGAAGT+TGG + chr2_2:3400520-3400539 Msa0231220:CDS 45.0%
ACTATCCTCGAGGTGATGAT+TGG + chr2_2:3400573-3400592 Msa0231220:CDS 45.0%
ACAGTGGGACTTATCCTGTA+GGG - chr2_2:3400970-3400989 None:intergenic 45.0%
TACAGTGGGACTTATCCTGT+AGG - chr2_2:3400971-3400990 None:intergenic 45.0%
ATTTCCCTCAAACGTGCATC+AGG + chr2_2:3401909-3401928 Msa0231220:CDS 45.0%
! GCATATTCTAAGTGGCCTTG+TGG - chr2_2:3399939-3399958 None:intergenic 45.0%
!! ATGTAAGCATTGGAGGAGGA+AGG - chr2_2:3399966-3399985 None:intergenic 45.0%
!! GTGAATGTAAGCATTGGAGG+AGG - chr2_2:3399970-3399989 None:intergenic 45.0%
!! GGAGTGAATGTAAGCATTGG+AGG - chr2_2:3399973-3399992 None:intergenic 45.0%
CACTATCTGTATCATCTCCG+CGG + chr2_2:3400022-3400041 Msa0231220:CDS 45.0%
GACACAGGCATCAACATCAT+TGG - chr2_2:3400111-3400130 None:intergenic 45.0%
TGCAATTGGGAACCTCATGA+GGG - chr2_2:3400139-3400158 None:intergenic 45.0%
TTGCAATTGGGAACCTCATG+AGG - chr2_2:3400140-3400159 None:intergenic 45.0%
CTCATCATCGTCGTTGCAAT+TGG - chr2_2:3400153-3400172 None:intergenic 45.0%
CAATTGCAACGACGATGATG+AGG + chr2_2:3400151-3400170 Msa0231220:CDS 45.0%
GAAAATATCTTCCCTCCGCT+TGG + chr2_2:3400251-3400270 Msa0231220:CDS 45.0%
TGAGAAATCTCCATGCCAAG+CGG - chr2_2:3400269-3400288 None:intergenic 45.0%
AAGAGGAAGAAACTCGACGT+CGG + chr2_2:3400398-3400417 Msa0231220:CDS 45.0%
! TGAGTTGGAGAAGGCAGTAA+TGG + chr2_2:3400505-3400524 Msa0231220:CDS 45.0%
! AGTAATGGAGGCAGTGAAGT+TGG + chr2_2:3400520-3400539 Msa0231220:CDS 45.0%
ACTATCCTCGAGGTGATGAT+TGG + chr2_2:3400573-3400592 Msa0231220:CDS 45.0%
ACAGTGGGACTTATCCTGTA+GGG - chr2_2:3400970-3400989 None:intergenic 45.0%
TACAGTGGGACTTATCCTGT+AGG - chr2_2:3400971-3400990 None:intergenic 45.0%
ATTTCCCTCAAACGTGCATC+AGG + chr2_2:3401909-3401928 Msa0231220:CDS 45.0%
ATTTGAGGGTGGACATGCGA+TGG - chr2_2:3399852-3399871 None:intergenic 50.0%
ATGTCTGCCAGATTTGAGGG+TGG - chr2_2:3399863-3399882 None:intergenic 50.0%
TGGTATTTGGACAGCAGTGC+CGG - chr2_2:3399889-3399908 None:intergenic 50.0%
GACCTCATCAGTGTGAGGAT+CGG - chr2_2:3400060-3400079 None:intergenic 50.0%
AAATCTCCATGCCAAGCGGA+GGG - chr2_2:3400265-3400284 None:intergenic 50.0%
CTGACGTTCATGGTGAAGTC+TGG + chr2_2:3400303-3400322 Msa0231220:CDS 50.0%
AAGTTTCACCATGCCTGCCA+CGG + chr2_2:3400326-3400345 Msa0231220:CDS 50.0%
! ATCTTTCTTTTGCTCCGCCG+CGG - chr2_2:3400486-3400505 None:intergenic 50.0%
GTTGGAGAAGGCAGTAATGG+AGG + chr2_2:3400508-3400527 Msa0231220:CDS 50.0%
TCATGCCAATCATCACCTCG+AGG - chr2_2:3400581-3400600 None:intergenic 50.0%
CAGTGGGACTTATCCTGTAG+GGG - chr2_2:3400969-3400988 None:intergenic 50.0%
CTCATGTATGTGTGGGTGGA+TGG + chr2_2:3401521-3401540 Msa0231220:intron 50.0%
TGTATGTGTGGGTGGATGGA+TGG + chr2_2:3401525-3401544 Msa0231220:intron 50.0%
TTCCAAGAAGAGTCAGCCCA+TGG + chr2_2:3401874-3401893 Msa0231220:CDS 50.0%
AAGAAGAGTCAGCCCATGGT+GGG + chr2_2:3401878-3401897 Msa0231220:CDS 50.0%
TCGACCTGATGCACGTTTGA+GGG - chr2_2:3401916-3401935 None:intergenic 50.0%
ATTTGAGGGTGGACATGCGA+TGG - chr2_2:3399852-3399871 None:intergenic 50.0%
ATGTCTGCCAGATTTGAGGG+TGG - chr2_2:3399863-3399882 None:intergenic 50.0%
TGGTATTTGGACAGCAGTGC+CGG - chr2_2:3399889-3399908 None:intergenic 50.0%
GACCTCATCAGTGTGAGGAT+CGG - chr2_2:3400060-3400079 None:intergenic 50.0%
AAATCTCCATGCCAAGCGGA+GGG - chr2_2:3400265-3400284 None:intergenic 50.0%
CTGACGTTCATGGTGAAGTC+TGG + chr2_2:3400303-3400322 Msa0231220:CDS 50.0%
AAGTTTCACCATGCCTGCCA+CGG + chr2_2:3400326-3400345 Msa0231220:CDS 50.0%
! ATCTTTCTTTTGCTCCGCCG+CGG - chr2_2:3400486-3400505 None:intergenic 50.0%
GTTGGAGAAGGCAGTAATGG+AGG + chr2_2:3400508-3400527 Msa0231220:CDS 50.0%
TCATGCCAATCATCACCTCG+AGG - chr2_2:3400581-3400600 None:intergenic 50.0%
CAGTGGGACTTATCCTGTAG+GGG - chr2_2:3400969-3400988 None:intergenic 50.0%
CTCATGTATGTGTGGGTGGA+TGG + chr2_2:3401521-3401540 Msa0231220:intron 50.0%
TGTATGTGTGGGTGGATGGA+TGG + chr2_2:3401525-3401544 Msa0231220:intron 50.0%
TTCCAAGAAGAGTCAGCCCA+TGG + chr2_2:3401874-3401893 Msa0231220:CDS 50.0%
AAGAAGAGTCAGCCCATGGT+GGG + chr2_2:3401878-3401897 Msa0231220:CDS 50.0%
TCGACCTGATGCACGTTTGA+GGG - chr2_2:3401916-3401935 None:intergenic 50.0%
ATGGTTGCTGCTGTTGGTGC+TGG - chr2_2:3399833-3399852 None:intergenic 55.0%
CATGCGATGGTTGCTGCTGT+TGG - chr2_2:3399839-3399858 None:intergenic 55.0%
CGCATGTCCACCCTCAAATC+TGG + chr2_2:3399853-3399872 Msa0231220:CDS 55.0%
GCGAAGACCTCATCAGTGTG+AGG - chr2_2:3400065-3400084 None:intergenic 55.0%
CTCATGAGGGTCTTGGACAC+AGG - chr2_2:3400126-3400145 None:intergenic 55.0%
CTGTGTCCAAGACCCTCATG+AGG + chr2_2:3400124-3400143 Msa0231220:CDS 55.0%
TGGGAACCTCATGAGGGTCT+TGG - chr2_2:3400133-3400152 None:intergenic 55.0%
TATCTTCCCTCCGCTTGGCA+TGG + chr2_2:3400256-3400275 Msa0231220:CDS 55.0%
GAAATCTCCATGCCAAGCGG+AGG - chr2_2:3400266-3400285 None:intergenic 55.0%
CATGAACGTCAGTGACGAGG+AGG - chr2_2:3400295-3400314 None:intergenic 55.0%
CTCCTCGTCACTGACGTTCA+TGG + chr2_2:3400293-3400312 Msa0231220:CDS 55.0%
CACCATGAACGTCAGTGACG+AGG - chr2_2:3400298-3400317 None:intergenic 55.0%
AGTTTCACCATGCCTGCCAC+GGG + chr2_2:3400327-3400346 Msa0231220:CDS 55.0%
CGTTTCTCTTGGCAAACCCG+TGG - chr2_2:3400346-3400365 None:intergenic 55.0%
! CACCATGGGCTGACTCTTCT+TGG - chr2_2:3401879-3401898 None:intergenic 55.0%
CAAGAAGAGTCAGCCCATGG+TGG + chr2_2:3401877-3401896 Msa0231220:CDS 55.0%
GTCGACCTGATGCACGTTTG+AGG - chr2_2:3401917-3401936 None:intergenic 55.0%
ATGGTTGCTGCTGTTGGTGC+TGG - chr2_2:3399833-3399852 None:intergenic 55.0%
CATGCGATGGTTGCTGCTGT+TGG - chr2_2:3399839-3399858 None:intergenic 55.0%
CGCATGTCCACCCTCAAATC+TGG + chr2_2:3399853-3399872 Msa0231220:CDS 55.0%
GCGAAGACCTCATCAGTGTG+AGG - chr2_2:3400065-3400084 None:intergenic 55.0%
CTCATGAGGGTCTTGGACAC+AGG - chr2_2:3400126-3400145 None:intergenic 55.0%
CTGTGTCCAAGACCCTCATG+AGG + chr2_2:3400124-3400143 Msa0231220:CDS 55.0%
TGGGAACCTCATGAGGGTCT+TGG - chr2_2:3400133-3400152 None:intergenic 55.0%
TATCTTCCCTCCGCTTGGCA+TGG + chr2_2:3400256-3400275 Msa0231220:CDS 55.0%
GAAATCTCCATGCCAAGCGG+AGG - chr2_2:3400266-3400285 None:intergenic 55.0%
CATGAACGTCAGTGACGAGG+AGG - chr2_2:3400295-3400314 None:intergenic 55.0%
CTCCTCGTCACTGACGTTCA+TGG + chr2_2:3400293-3400312 Msa0231220:CDS 55.0%
CACCATGAACGTCAGTGACG+AGG - chr2_2:3400298-3400317 None:intergenic 55.0%
AGTTTCACCATGCCTGCCAC+GGG + chr2_2:3400327-3400346 Msa0231220:CDS 55.0%
CGTTTCTCTTGGCAAACCCG+TGG - chr2_2:3400346-3400365 None:intergenic 55.0%
! CACCATGGGCTGACTCTTCT+TGG - chr2_2:3401879-3401898 None:intergenic 55.0%
CAAGAAGAGTCAGCCCATGG+TGG + chr2_2:3401877-3401896 Msa0231220:CDS 55.0%
GTCGACCTGATGCACGTTTG+AGG - chr2_2:3401917-3401936 None:intergenic 55.0%
ATCGGCGAGGAGATCAACCG+CGG - chr2_2:3400042-3400061 None:intergenic 60.0%
CATCAGTGTGAGGATCGGCG+AGG - chr2_2:3400055-3400074 None:intergenic 60.0%
CGCCGATCCTCACACTGATG+AGG + chr2_2:3400055-3400074 Msa0231220:CDS 60.0%
TCTCTTGGCAAACCCGTGGC+AGG - chr2_2:3400342-3400361 None:intergenic 60.0%
TGGGATTCGCAGGAAAGCCG+CGG + chr2_2:3400466-3400485 Msa0231220:CDS 60.0%
GGAGGCAGTGAAGTTGGCAG+AGG + chr2_2:3400526-3400545 Msa0231220:CDS 60.0%
ATCGGCGAGGAGATCAACCG+CGG - chr2_2:3400042-3400061 None:intergenic 60.0%
CATCAGTGTGAGGATCGGCG+AGG - chr2_2:3400055-3400074 None:intergenic 60.0%
CGCCGATCCTCACACTGATG+AGG + chr2_2:3400055-3400074 Msa0231220:CDS 60.0%
TCTCTTGGCAAACCCGTGGC+AGG - chr2_2:3400342-3400361 None:intergenic 60.0%
TGGGATTCGCAGGAAAGCCG+CGG + chr2_2:3400466-3400485 Msa0231220:CDS 60.0%
GGAGGCAGTGAAGTTGGCAG+AGG + chr2_2:3400526-3400545 Msa0231220:CDS 60.0%
!! GCTGCTGTTGGTGCTGGTGC+TGG - chr2_2:3399827-3399846 None:intergenic 65.0%
TGGCAAACCCGTGGCAGGCA+TGG - chr2_2:3400337-3400356 None:intergenic 65.0%
GATTCGCAGGAAAGCCGCGG+CGG + chr2_2:3400469-3400488 Msa0231220:CDS 65.0%
!! GCTGCTGTTGGTGCTGGTGC+TGG - chr2_2:3399827-3399846 None:intergenic 65.0%
TGGCAAACCCGTGGCAGGCA+TGG - chr2_2:3400337-3400356 None:intergenic 65.0%
GATTCGCAGGAAAGCCGCGG+CGG + chr2_2:3400469-3400488 Msa0231220:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 3399813 3402028 3399813 ID=Msa0231220;Name=Msa0231220
chr2_2 mRNA 3399813 3402028 3399813 ID=Msa0231220-mRNA-1;Parent=Msa0231220;Name=Msa0231220-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|2|0|376
chr2_2 exon 3399813 3400757 3399813 ID=Msa0231220-mRNA-1:exon:1315;Parent=Msa0231220-mRNA-1
chr2_2 exon 3401843 3402028 3401843 ID=Msa0231220-mRNA-1:exon:1316;Parent=Msa0231220-mRNA-1
chr2_2 CDS 3399813 3400757 3399813 ID=Msa0231220-mRNA-1:cds;Parent=Msa0231220-mRNA-1
chr2_2 CDS 3401843 3402028 3401843 ID=Msa0231220-mRNA-1:cds;Parent=Msa0231220-mRNA-1
Gene Sequence

>Msa0231220

ATGTCTCTCAACCAGCACCAGCACCAACAGCAGCAACCATCGCATGTCCACCCTCAAATCTGGCAGACATTAACCGGCACTGCTGTCCAAATACCAAAGTTGCATTCAAGAGTTTACTATTTTCCACAAGGCCACTTAGAATATGCTTCTCCTTCCTCCTCCAATGCTTACATTCACTCCCTTCATGATCTTCAACGTTTTCGTCCTTTCACTATCTGTATCATCTCCGCGGTTGATCTCCTCGCCGATCCTCACACTGATGAGGTCTTCGCTAAACTGCTACTCACTCCAATAACCAATGATGTTGATGCCTGTGTCCAAGACCCTCATGAGGTTCCCAATTGCAACGACGATGATGAGGTAATTGGTTCGTTTACAAGGACTCTCGCCCCTACTAATGTAAGCAAGCATACATTTTACATACCTCGGTTTTGTGCTGAAAATATCTTCCCTCCGCTTGGCATGGAGATTTCTCAAAACCTCCTCGTCACTGACGTTCATGGTGAAGTCTGGAAGTTTCACCATGCCTGCCACGGGTTTGCCAAGAGAAACGTGTTTTATATCCCTGAATGGAGTTCGTTTGTTAAGAGGAAGAAACTCGACGTCGGAGATGCTGTTGTTTTCATGAAAAACTCAACGGGAAAATTATTTGTTGGGATTCGCAGGAAAGCCGCGGCGGAGCAAAAGAAAGATGAGTTGGAGAAGGCAGTAATGGAGGCAGTGAAGTTGGCAGAGGAGAACAAGCCATTTGAAATTGTTTACTATCCTCGAGGTGATGATTGGCATGATTTTGTAGTGGATGCTAATATTGTTGATGAATCAATGAAAATTCAATGGAACCCTAGAATGAGAGTTAAGATGAAGACTCATAAATCTTCAAGGATCCCATATCAAGGGACAATCTCTACTGTATCTCGTACGTCTAATTTATGGCGCATGCTACAGGTTAACTGGGATGAATTTCAAGTCTCACAAATTCCAAGAAGAGTCAGCCCATGGTGGGTTGAACTTATTTCCCTCAAACGTGCATCAGGTCGACCATTCCCCTCAACTAAAAAACTTAGAACTGTTCAAAGTTCTGCCCCATTAAGTGATGAAAAGGAATCCCCTTATATGATAAGGTTTTTGTAA
Protein sequence

>Msa0231220

MSLNQHQHQQQQPSHVHPQIWQTLTGTAVQIPKLHSRVYYFPQGHLEYASPSSSNAYIHSLHDLQRFRPFTICIISAVDLLADPHTDEVFAKLLLTPITNDVDACVQDPHEVPNCNDDDEVIGSFTRTLAPTNVSKHTFYIPRFCAENIFPPLGMEISQNLLVTDVHGEVWKFHHACHGFAKRNVFYIPEWSSFVKRKKLDVGDAVVFMKNSTGKLFVGIRRKAAAEQKKDELEKAVMEAVKLAEENKPFEIVYYPRGDDWHDFVVDANIVDESMKIQWNPRMRVKMKTHKSSRIPYQGTISTVSRTSNLWRMLQVNWDEFQVSQIPRRVSPWWVELISLKRASGRPFPSTKKLRTVQSSAPLSDEKESPYMIRFL*