Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231780 | XP_003593111.1 | 99.766 | 427 | 1 | 0 | 1 | 427 | 1 | 427 | 0.0 | 886 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231780 | sp|Q75HX5|TLP8_ORYSJ | 76.286 | 447 | 84 | 10 | 1 | 427 | 1 | 445 | 0.0 | 632 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231780 | G7IL74 | 99.766 | 427 | 1 | 0 | 1 | 427 | 1 | 427 | 0.0 | 886 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0231780 | TF | TUB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231780 | MtrunA17_Chr2g0278511 | 99.766 | 427 | 1 | 0 | 1 | 427 | 1 | 427 | 0.0 | 886 |
| Msa0231780 | MtrunA17_Chr1g0201891 | 80.230 | 435 | 74 | 5 | 1 | 427 | 1 | 431 | 0.0 | 692 |
| Msa0231780 | MtrunA17_Chr5g0404321 | 55.300 | 434 | 169 | 12 | 1 | 427 | 1 | 416 | 8.23e-156 | 446 |
| Msa0231780 | MtrunA17_Chr2g0286441 | 58.005 | 381 | 137 | 6 | 49 | 427 | 34 | 393 | 1.07e-154 | 443 |
| Msa0231780 | MtrunA17_Chr1g0196071 | 53.241 | 432 | 167 | 10 | 1 | 427 | 1 | 402 | 5.91e-154 | 441 |
| Msa0231780 | MtrunA17_Chr8g0373001 | 52.791 | 430 | 182 | 8 | 1 | 427 | 1 | 412 | 6.86e-149 | 429 |
| Msa0231780 | MtrunA17_Chr1g0155301 | 49.777 | 448 | 178 | 9 | 1 | 427 | 1 | 422 | 1.26e-141 | 410 |
| Msa0231780 | MtrunA17_Chr2g0315641 | 48.670 | 376 | 145 | 9 | 54 | 427 | 42 | 371 | 1.18e-116 | 345 |
| Msa0231780 | MtrunA17_Chr2g0315651 | 42.632 | 380 | 163 | 11 | 54 | 427 | 37 | 367 | 1.03e-92 | 284 |
| Msa0231780 | MtrunA17_Chr8g0373361 | 42.791 | 430 | 189 | 15 | 15 | 420 | 9 | 405 | 7.98e-92 | 283 |
| Msa0231780 | MtrunA17_Chr8g0373331 | 36.449 | 428 | 184 | 13 | 1 | 420 | 1 | 348 | 1.20e-74 | 237 |
| Msa0231780 | MtrunA17_Chr1g0156151 | 46.083 | 217 | 105 | 5 | 1 | 211 | 1 | 211 | 4.59e-53 | 177 |
| Msa0231780 | MtrunA17_Chr8g0373351 | 33.679 | 386 | 128 | 11 | 49 | 419 | 14 | 286 | 2.25e-49 | 169 |
| Msa0231780 | MtrunA17_Chr8g0373341 | 38.767 | 227 | 89 | 7 | 1 | 207 | 1 | 197 | 8.97e-30 | 117 |
| Msa0231780 | MtrunA17_Chr8g0373341 | 45.455 | 99 | 47 | 2 | 320 | 417 | 228 | 320 | 7.59e-17 | 81.3 |
| Msa0231780 | MtrunA17_Chr3g0091401 | 40.404 | 99 | 52 | 2 | 96 | 194 | 8 | 99 | 4.17e-15 | 71.2 |
| Msa0231780 | MtrunA17_Chr2g0334041 | 40.909 | 110 | 44 | 5 | 323 | 426 | 265 | 359 | 3.74e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231780 | AT1G25280.1 | 73.392 | 451 | 90 | 14 | 1 | 427 | 1 | 445 | 0.0 | 612 |
| Msa0231780 | AT1G76900.2 | 70.130 | 462 | 96 | 11 | 1 | 427 | 1 | 455 | 0.0 | 609 |
| Msa0231780 | AT1G76900.1 | 70.130 | 462 | 96 | 11 | 1 | 427 | 1 | 455 | 0.0 | 609 |
| Msa0231780 | AT1G76900.3 | 70.130 | 462 | 96 | 11 | 1 | 427 | 1 | 455 | 0.0 | 609 |
| Msa0231780 | AT1G43640.1 | 68.552 | 442 | 111 | 7 | 1 | 427 | 1 | 429 | 0.0 | 605 |
| Msa0231780 | AT1G43640.2 | 70.400 | 375 | 86 | 5 | 66 | 427 | 1 | 363 | 0.0 | 535 |
| Msa0231780 | AT2G47900.2 | 55.093 | 432 | 163 | 7 | 1 | 427 | 1 | 406 | 3.77e-167 | 475 |
| Msa0231780 | AT2G47900.1 | 55.093 | 432 | 163 | 7 | 1 | 427 | 1 | 406 | 3.77e-167 | 475 |
| Msa0231780 | AT2G47900.3 | 54.965 | 433 | 163 | 8 | 1 | 427 | 1 | 407 | 1.13e-165 | 472 |
| Msa0231780 | AT2G18280.2 | 52.995 | 434 | 156 | 9 | 1 | 427 | 1 | 393 | 1.42e-146 | 422 |
| Msa0231780 | AT2G18280.1 | 52.995 | 434 | 156 | 9 | 1 | 427 | 1 | 393 | 1.42e-146 | 422 |
| Msa0231780 | AT1G47270.3 | 50.230 | 434 | 163 | 8 | 1 | 427 | 1 | 388 | 9.23e-140 | 405 |
| Msa0231780 | AT1G47270.1 | 50.230 | 434 | 163 | 8 | 1 | 427 | 26 | 413 | 1.23e-139 | 405 |
| Msa0231780 | AT1G47270.2 | 50.230 | 434 | 163 | 8 | 1 | 427 | 25 | 412 | 1.27e-139 | 405 |
| Msa0231780 | AT3G06380.1 | 51.979 | 379 | 146 | 8 | 54 | 427 | 33 | 380 | 3.54e-128 | 375 |
| Msa0231780 | AT5G18680.1 | 49.148 | 411 | 162 | 11 | 32 | 427 | 11 | 389 | 1.78e-125 | 369 |
| Msa0231780 | AT1G25280.3 | 73.063 | 271 | 52 | 11 | 174 | 427 | 1 | 267 | 8.91e-124 | 360 |
| Msa0231780 | AT1G25280.2 | 73.063 | 271 | 52 | 11 | 174 | 427 | 1 | 267 | 8.91e-124 | 360 |
| Msa0231780 | AT1G53320.1 | 48.294 | 381 | 151 | 8 | 51 | 427 | 41 | 379 | 1.06e-115 | 343 |
| Msa0231780 | AT5G18680.2 | 51.703 | 323 | 116 | 9 | 113 | 427 | 7 | 297 | 7.79e-101 | 302 |
| Msa0231780 | AT3G06380.2 | 51.111 | 315 | 119 | 7 | 117 | 427 | 5 | 288 | 7.08e-100 | 300 |
| Msa0231780 | AT1G61940.2 | 56.977 | 86 | 37 | 0 | 57 | 142 | 1 | 86 | 8.86e-31 | 119 |
| Msa0231780 | AT1G61940.1 | 60.656 | 61 | 24 | 0 | 57 | 117 | 1 | 61 | 3.16e-19 | 87.0 |
Find 146 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCTAGATCTATTTATTC+TGG | 0.101270 | 2_2:-4065354 | Msa0231780:five_prime_UTR |
| GTTTGATTAGTTCACTTTAA+AGG | 0.174467 | 2_2:+4061366 | None:intergenic |
| TTGTACCAACAAACTATTAT+AGG | 0.212354 | 2_2:-4061139 | Msa0231780:three_prime_UTR |
| TATGTTGTAACCTATGTATT+AGG | 0.212506 | 2_2:-4061239 | Msa0231780:three_prime_UTR |
| GTGATCTAGCTTAGGAGTTT+TGG | 0.235422 | 2_2:-4064987 | Msa0231780:five_prime_UTR |
| TACACCAGATCAAACTTTCT+TGG | 0.237446 | 2_2:-4062110 | Msa0231780:intron |
| GCAGCTTTGTTGGTTGAAAA+TGG | 0.267345 | 2_2:-4063199 | Msa0231780:intron |
| TATTCTTATTACTAGTGTTA+TGG | 0.271731 | 2_2:-4061298 | Msa0231780:three_prime_UTR |
| ATTACTAGTGTTATGGGATT+AGG | 0.272229 | 2_2:-4061291 | Msa0231780:three_prime_UTR |
| CGTGACGTTCGTGATAGTTT+TGG | 0.276663 | 2_2:-4064307 | Msa0231780:CDS |
| GATGCTGGCGGCTCTGTTCC+TGG | 0.295710 | 2_2:-4061864 | Msa0231780:CDS |
| ATTCTTATTACTAGTGTTAT+GGG | 0.301351 | 2_2:-4061297 | Msa0231780:three_prime_UTR |
| CAGTCCCTGGAGGACATATA+TGG | 0.304546 | 2_2:+4062042 | None:intergenic |
| GTGCTTCTGTTTGCCAGTCT+TGG | 0.312781 | 2_2:-4064075 | Msa0231780:CDS |
| ATTTGCAACCAACCTGCTTC+AGG | 0.316319 | 2_2:+4063987 | None:intergenic |
| ATGTTGTAACCTATGTATTA+GGG | 0.318091 | 2_2:-4061238 | Msa0231780:three_prime_UTR |
| GCTTCCACCCAACCACCTGC+TGG | 0.321946 | 2_2:-4061582 | Msa0231780:CDS |
| CCAGCATCAAGTGCTGAATT+TGG | 0.321978 | 2_2:+4061879 | None:intergenic |
| ATGACATCAAATAGTAATTC+CGG | 0.334292 | 2_2:+4064154 | None:intergenic |
| GCCGTCATCATCCTCATTAC+AGG | 0.338459 | 2_2:+4061725 | None:intergenic |
| ATGTTGCTGTGTTTCTTTCT+CGG | 0.344773 | 2_2:-4061193 | Msa0231780:three_prime_UTR |
| ACAAAAGAGATACTTATTCT+TGG | 0.352074 | 2_2:-4064365 | Msa0231780:five_prime_UTR |
| CAAAAGAGATACTTATTCTT+GGG | 0.392034 | 2_2:-4064364 | Msa0231780:five_prime_UTR |
| ACATATATGGGCAGAAGTGC+AGG | 0.394714 | 2_2:+4062055 | None:intergenic |
| TTCTGCAATTCGGCAAAGTT+GGG | 0.396243 | 2_2:-4061512 | Msa0231780:CDS |
| AAAGCTTGGAATGCAGATAA+AGG | 0.399095 | 2_2:+4061459 | None:intergenic |
| TTACTCGTCCCCGAAAATTA+AGG | 0.402869 | 2_2:+4061637 | None:intergenic |
| TCTCTAGATCTATTTATTCT+GGG | 0.406157 | 2_2:-4065353 | Msa0231780:intron |
| CTTCCACCCAACCACCTGCT+GGG | 0.409907 | 2_2:-4061581 | Msa0231780:CDS |
| CATATATGTCCTCCAGGGAC+TGG | 0.412842 | 2_2:-4062041 | Msa0231780:CDS |
| AGCAGAATGATAAAAGCTTT+AGG | 0.419630 | 2_2:+4065426 | None:intergenic |
| TCGGCGCCCCAGCAGGTGGT+TGG | 0.419959 | 2_2:+4061574 | None:intergenic |
| CTTCTGTTTGCCAGTCTTGG+AGG | 0.420970 | 2_2:-4064072 | Msa0231780:CDS |
| AATTACTATTTGATGTCATT+CGG | 0.424860 | 2_2:-4064150 | Msa0231780:CDS |
| GCAACTACATGCTTTCTTGA+AGG | 0.425706 | 2_2:+4064100 | None:intergenic |
| AAAGTGAACTAATCAAACTT+TGG | 0.428598 | 2_2:-4061361 | Msa0231780:three_prime_UTR |
| TGTAATTGTTCATGCCATCT+TGG | 0.429018 | 2_2:+4061669 | None:intergenic |
| CTCAGTGTAGGTTGTTCTCC+TGG | 0.432833 | 2_2:+4063150 | None:intergenic |
| TTGTAATTCAAAATAGCTGC+TGG | 0.434645 | 2_2:-4064189 | Msa0231780:CDS |
| CATAACCTATAATAGTTTGT+TGG | 0.434967 | 2_2:+4061134 | None:intergenic |
| AATTCCTTCTTTCTGCTAAG+AGG | 0.435478 | 2_2:-4063174 | Msa0231780:CDS |
| TAACTCCCAGATGGGACCTT+TGG | 0.438868 | 2_2:+4061984 | None:intergenic |
| GTATCGCCAAAGGTCCCATC+TGG | 0.445185 | 2_2:-4061990 | Msa0231780:CDS |
| GATGGTGTCGGCGCCCCAGC+AGG | 0.447033 | 2_2:+4061567 | None:intergenic |
| GATAAGATTATTCTGCAATT+CGG | 0.448717 | 2_2:-4061522 | Msa0231780:CDS |
| CGGCGCCCCAGCAGGTGGTT+GGG | 0.449066 | 2_2:+4061575 | None:intergenic |
| ATTCTGCAATTCGGCAAAGT+TGG | 0.451251 | 2_2:-4061513 | Msa0231780:CDS |
| TTCTTTCTGCTAAGAGGACC+AGG | 0.458845 | 2_2:-4063168 | Msa0231780:CDS |
| GTTCCCTGTGTCCCTGAAGC+AGG | 0.461781 | 2_2:-4063999 | Msa0231780:intron |
| TAATGCAATGCATCTTCCTT+GGG | 0.462060 | 2_2:+4061913 | None:intergenic |
| AGAATAATCTTATCATGTTC+CGG | 0.463219 | 2_2:+4061531 | None:intergenic |
| CGGCTCGTCTTCCCAGTCCC+TGG | 0.463239 | 2_2:+4062029 | None:intergenic |
| TGACATCAAATAGTAATTCC+GGG | 0.465027 | 2_2:+4064155 | None:intergenic |
| CAGGGCTCAGACAAAGGAAT+AGG | 0.465192 | 2_2:+4063794 | None:intergenic |
| AATTGTTCATGCCATCTTGG+AGG | 0.466985 | 2_2:+4061672 | None:intergenic |
| TGCTTTAAACCCTAATACAT+AGG | 0.469426 | 2_2:+4061229 | None:intergenic |
| TGAATTAGCTCTGGCTGTCC+AGG | 0.469795 | 2_2:+4061846 | None:intergenic |
| TATGCTACGGAAAGACATTC+CGG | 0.472706 | 2_2:+4064333 | None:intergenic |
| TCTGCCCATATATGTCCTCC+AGG | 0.473900 | 2_2:-4062047 | Msa0231780:CDS |
| TGACGGCAAGATGAGACCTT+TGG | 0.479423 | 2_2:-4061709 | Msa0231780:CDS |
| CTGCTGGGCGAACTTGCCCC+CGG | 0.484008 | 2_2:-4064173 | Msa0231780:CDS |
| GGTGCTTTGTGATCTAGCTT+AGG | 0.486239 | 2_2:-4064995 | Msa0231780:five_prime_UTR |
| CTATTCCTTTGTCTGAGCCC+TGG | 0.486417 | 2_2:-4063793 | Msa0231780:intron |
| GTAAGTTTGCCACAGAACTC+TGG | 0.486827 | 2_2:+4064022 | None:intergenic |
| GTTCCCTAGAGGACTCATTC+CGG | 0.488569 | 2_2:-4061821 | Msa0231780:CDS |
| ATAATGCAATGCATCTTCCT+TGG | 0.491165 | 2_2:+4061912 | None:intergenic |
| AAACTATTCACAAGCCAACT+TGG | 0.491824 | 2_2:+4061410 | None:intergenic |
| TTATTCTTGGGATTCTACTC+CGG | 0.494237 | 2_2:-4064352 | Msa0231780:five_prime_UTR |
| TTATCATGTTCCGGTGGTGC+TGG | 0.495403 | 2_2:+4061540 | None:intergenic |
| TTAAGCATATTGCAAAAGCT+TGG | 0.496726 | 2_2:+4061445 | None:intergenic |
| ATGATTCCGTCTCGTGGCCC+TGG | 0.498403 | 2_2:+4063859 | None:intergenic |
| TTTGCAACCAACCTGCTTCA+GGG | 0.503932 | 2_2:+4063988 | None:intergenic |
| TCTCAGCTTCATACAATACA+AGG | 0.503978 | 2_2:-4065380 | Msa0231780:five_prime_UTR |
| AACCAACCAGTACAAGCATA+TGG | 0.505142 | 2_2:+4064406 | None:intergenic |
| ATATATGTCCTCCAGGGACT+GGG | 0.505737 | 2_2:-4062040 | Msa0231780:CDS |
| AAAGTCTCATGGTTCTGTAC+AGG | 0.510601 | 2_2:-4064230 | Msa0231780:CDS |
| ACTTCGAAAATGAGATGCTC+CGG | 0.512791 | 2_2:+4061802 | None:intergenic |
| TGCTCCGGAATGAGTCCTCT+AGG | 0.516799 | 2_2:+4061817 | None:intergenic |
| GCTTACCAGGGCTCAGACAA+AGG | 0.519038 | 2_2:+4063788 | None:intergenic |
| CCAAATTCAGCACTTGATGC+TGG | 0.519313 | 2_2:-4061879 | Msa0231780:CDS |
| TGGCAGCCATATGCTTGTAC+TGG | 0.521805 | 2_2:-4064412 | Msa0231780:intron |
| TATAATAGTTTGTTGGTACA+AGG | 0.523403 | 2_2:+4061141 | None:intergenic |
| ACCATCTCAACCAGCACCAC+CGG | 0.524305 | 2_2:-4061550 | Msa0231780:CDS |
| CGCCCCAGCAGGTGGTTGGG+TGG | 0.525317 | 2_2:+4061578 | None:intergenic |
| AGGGAACGGTGAATTAGCTC+TGG | 0.526856 | 2_2:+4061837 | None:intergenic |
| GAGACTTTCCTCTATGATGA+TGG | 0.534079 | 2_2:+4064245 | None:intergenic |
| TGCACATATTCCTCCAAGAC+TGG | 0.534318 | 2_2:+4064062 | None:intergenic |
| AGTCCCTGGAGGACATATAT+GGG | 0.540568 | 2_2:+4062043 | None:intergenic |
| TCCGGTGGTGCTGGTTGAGA+TGG | 0.545833 | 2_2:+4061549 | None:intergenic |
| CCAACCTGCTTCAGGGACAC+AGG | 0.545878 | 2_2:+4063995 | None:intergenic |
| TTCCACCCAACCACCTGCTG+GGG | 0.546085 | 2_2:-4061580 | Msa0231780:CDS |
| CCATCGAGTTCAGCAGTGCA+CGG | 0.552583 | 2_2:-4061767 | Msa0231780:CDS |
| GGTGTCGGCGCCCCAGCAGG+TGG | 0.552680 | 2_2:+4061570 | None:intergenic |
| TAAGTTTGCCACAGAACTCT+GGG | 0.552867 | 2_2:+4064023 | None:intergenic |
| AACTAATCAAACTTTGGTGA+TGG | 0.552884 | 2_2:-4061355 | Msa0231780:three_prime_UTR |
| CACTGAGTATGTGATTTCAA+TGG | 0.555250 | 2_2:-4063134 | Msa0231780:CDS |
| TGGTCCTCTTAGCAGAAAGA+AGG | 0.558383 | 2_2:+4063170 | None:intergenic |
| TAGAGGAGAGTGAGAATACA+TGG | 0.558627 | 2_2:-4064123 | Msa0231780:CDS |
| AAGCAGCTTTGACACCAAGT+TGG | 0.560190 | 2_2:-4061424 | Msa0231780:CDS |
| AGCCATATGCTTGTACTGGT+TGG | 0.568682 | 2_2:-4064408 | Msa0231780:five_prime_UTR |
| CCGTGCACTGCTGAACTCGA+TGG | 0.569599 | 2_2:+4061767 | None:intergenic |
| TCTTCTCTCACTCTTGTACC+CGG | 0.570202 | 2_2:+4065500 | None:intergenic |
| AGATCAAGTAATACTTACAT+TGG | 0.570296 | 2_2:-4063094 | Msa0231780:CDS |
| ACATATGAACTAAATGTGCT+CGG | 0.570299 | 2_2:-4061945 | Msa0231780:CDS |
| CTAAATGTGCTCGGAACTCG+AGG | 0.572448 | 2_2:-4061936 | Msa0231780:CDS |
| GTACAAGGATAACATGGCCT+TGG | 0.582730 | 2_2:+4061156 | None:intergenic |
| TGGGAGTTACAACATAGCTC+AGG | 0.584581 | 2_2:-4061970 | Msa0231780:CDS |
| CTTACTGGCCATCATCATAG+AGG | 0.586395 | 2_2:-4064253 | Msa0231780:CDS |
| GGCATGAACAATTACAGTGC+TGG | 0.588906 | 2_2:-4061662 | Msa0231780:CDS |
| TGATGTCATTCGGCGACTAG+AGG | 0.590244 | 2_2:-4064140 | Msa0231780:CDS |
| CATCATAGAGGAAAGTCTCA+TGG | 0.596493 | 2_2:-4064241 | Msa0231780:CDS |
| GGCTCAGACAAAGGAATAGG+TGG | 0.596757 | 2_2:+4063797 | None:intergenic |
| TTTAATCATGAAGCAAAGAG+AGG | 0.598801 | 2_2:-4061389 | Msa0231780:three_prime_UTR |
| TAAAGGATATCGATAATCCA+TGG | 0.599763 | 2_2:+4061476 | None:intergenic |
| TCAGAAAATGCTAACATACT+CGG | 0.599805 | 2_2:+4065449 | None:intergenic |
| GCTCCGGAATGAGTCCTCTA+GGG | 0.602403 | 2_2:+4061818 | None:intergenic |
| CAACCTGCTTCAGGGACACA+GGG | 0.603326 | 2_2:+4063996 | None:intergenic |
| GCTATGTTGTAACTCCCAGA+TGG | 0.603839 | 2_2:+4061975 | None:intergenic |
| TGTAATTCAAAATAGCTGCT+GGG | 0.606882 | 2_2:-4064188 | Msa0231780:CDS |
| CATTGAATGATTCCGTCTCG+TGG | 0.607917 | 2_2:+4063853 | None:intergenic |
| CTATGTTGTAACTCCCAGAT+GGG | 0.609999 | 2_2:+4061976 | None:intergenic |
| TGCTCGGAACTCGAGGCCCA+AGG | 0.612968 | 2_2:-4061929 | Msa0231780:CDS |
| TATCGCCAAAGGTCCCATCT+GGG | 0.614613 | 2_2:-4061989 | Msa0231780:CDS |
| CGGTAGATTCATGCGTACCA+AGG | 0.617112 | 2_2:-4061173 | Msa0231780:three_prime_UTR |
| GACATCAAATAGTAATTCCG+GGG | 0.619654 | 2_2:+4064156 | None:intergenic |
| TTTCAGCCAGGGCCACGAGA+CGG | 0.619741 | 2_2:-4063865 | Msa0231780:intron |
| GAACGTCACGAACTATGCTA+CGG | 0.624312 | 2_2:+4064320 | None:intergenic |
| CATATATGGGCAGAAGTGCA+GGG | 0.629040 | 2_2:+4062056 | None:intergenic |
| TCCTGTAATGAGGATGATGA+CGG | 0.629322 | 2_2:-4061726 | Msa0231780:CDS |
| CTCGTCTTCCCAGTCCCTGG+AGG | 0.630641 | 2_2:+4062032 | None:intergenic |
| GTCTTGGAGGAATATGTGCA+AGG | 0.636885 | 2_2:-4064059 | Msa0231780:CDS |
| TGAAATCACATACTCAGTGT+AGG | 0.638165 | 2_2:+4063138 | None:intergenic |
| TTGTTGGTACAAGGATAACA+TGG | 0.638167 | 2_2:+4061150 | None:intergenic |
| TGGGAAAGATATGTTCACCA+TGG | 0.642687 | 2_2:-4061493 | Msa0231780:CDS |
| GGAATGAGTCCTCTAGGGAA+CGG | 0.643745 | 2_2:+4061823 | None:intergenic |
| GGTGCTGGTTGAGATGGTGT+CGG | 0.645312 | 2_2:+4061555 | None:intergenic |
| GCTAATTCACCGTTCCCTAG+AGG | 0.664796 | 2_2:-4061832 | Msa0231780:CDS |
| CTGCCCATATATGTCCTCCA+GGG | 0.665469 | 2_2:-4062046 | Msa0231780:CDS |
| ATACTTACATTGGAAAACTG+AGG | 0.671640 | 2_2:-4063084 | Msa0231780:intron |
| GTTAAGAGCCCAGAGTTCTG+TGG | 0.672556 | 2_2:-4064031 | Msa0231780:CDS |
| CTCAGCTTCATACAATACAA+GGG | 0.675039 | 2_2:-4065379 | Msa0231780:five_prime_UTR |
| CAGCATCTGAGCAATAACAA+TGG | 0.687773 | 2_2:+4061268 | None:intergenic |
| ATAATCTTATCATGTTCCGG+TGG | 0.692992 | 2_2:+4061534 | None:intergenic |
| ACATCAAATAGTAATTCCGG+GGG | 0.704639 | 2_2:+4064157 | None:intergenic |
| AATTCAGCACTTGATGCTGG+CGG | 0.710068 | 2_2:-4061876 | Msa0231780:CDS |
| ATATGGGCAGAAGTGCAGGG+AGG | 0.788147 | 2_2:+4062059 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAAAATATATTTTTTT+AGG | - | chr2_2:4061439-4061458 | Msa0231780:CDS | 0.0% |
| !!! | AATATATTTTTTTAGGTTTT+TGG | - | chr2_2:4061446-4061465 | Msa0231780:CDS | 10.0% |
| !!! | AATCTTAATTAGATTTTATA+TGG | + | chr2_2:4061881-4061900 | None:intergenic | 10.0% |
| !!! | TAATAAGATAATAATTTTTC+GGG | + | chr2_2:4064143-4064162 | None:intergenic | 10.0% |
| !! | AATAATAATAACTTTGGATT+TGG | + | chr2_2:4061276-4061295 | None:intergenic | 15.0% |
| !! | AAATACATAAAAAATTCTCT+TGG | + | chr2_2:4061382-4061401 | None:intergenic | 15.0% |
| !!! | ATTAGATTTTATATGGTTTA+TGG | + | chr2_2:4061874-4061893 | None:intergenic | 15.0% |
| !! | TCTTAGTAAAAAAAAAAAAG+AGG | + | chr2_2:4062637-4062656 | None:intergenic | 15.0% |
| !! | TCATTATTATTTCAACATAA+AGG | + | chr2_2:4062668-4062687 | None:intergenic | 15.0% |
| !! | AAAGTAAATAAAATTGAAAC+AGG | + | chr2_2:4063365-4063384 | None:intergenic | 15.0% |
| !! | TCTAAATTAATAAATTTCTC+TGG | + | chr2_2:4063809-4063828 | None:intergenic | 15.0% |
| !!! | TTATTAATTTACGATTTTCT+TGG | - | chr2_2:4064094-4064113 | Msa0231780:CDS | 15.0% |
| !!! | TATTAATTTACGATTTTCTT+GGG | - | chr2_2:4064095-4064114 | Msa0231780:CDS | 15.0% |
| !!! | AGTTTTTCAATTTTTTACAT+TGG | - | chr2_2:4064171-4064190 | Msa0231780:CDS | 15.0% |
| !!! | TCTAAAATAATAAATTTGTC+CGG | + | chr2_2:4064209-4064228 | None:intergenic | 15.0% |
| !!! | TGCAACCTTTTTTTTTTTTT+TGG | - | chr2_2:4061761-4061780 | Msa0231780:CDS | 20.0% |
| !! | AGGTACCAAAAAAAAAAAAA+AGG | + | chr2_2:4061769-4061788 | None:intergenic | 20.0% |
| !! | AATAATTTATTTGCCTTGTA+AGG | - | chr2_2:4061844-4061863 | Msa0231780:CDS | 20.0% |
| !!! | TATTTTTTGCATTTGATTCA+TGG | - | chr2_2:4062000-4062019 | Msa0231780:CDS | 20.0% |
| !! | GTGTGTAAATATTGAAATAT+CGG | - | chr2_2:4062044-4062063 | Msa0231780:CDS | 20.0% |
| !!! | TTAGTTTTTGGATAGTATTT+TGG | - | chr2_2:4062086-4062105 | Msa0231780:CDS | 20.0% |
| !! | AATTACTATTTGATGTCATT+CGG | - | chr2_2:4062441-4062460 | Msa0231780:intron | 20.0% |
| !! | TTTCAAAATTCAAACAGTTT+AGG | - | chr2_2:4062919-4062938 | Msa0231780:intron | 20.0% |
| !! | TTTCTGTAACATTTCTATAA+TGG | - | chr2_2:4063096-4063115 | Msa0231780:CDS | 20.0% |
| !! | AAAGTAGATAAAATTGAAAC+AGG | + | chr2_2:4063325-4063344 | None:intergenic | 20.0% |
| !!! | CTATGTTAAAAACTTCTTTT+AGG | - | chr2_2:4063570-4063589 | Msa0231780:intron | 20.0% |
| !! | CTCTATAAATTAATAATGTC+AGG | - | chr2_2:4063782-4063801 | Msa0231780:intron | 20.0% |
| !! | CATAAGTGGAAAATTATTTA+TGG | + | chr2_2:4064348-4064367 | None:intergenic | 20.0% |
| !!! | ATACCTTTTTAGAAAATCTA+CGG | + | chr2_2:4064585-4064604 | None:intergenic | 20.0% |
| !! | ACAGATAGATATAAAAAACA+AGG | + | chr2_2:4065271-4065290 | None:intergenic | 20.0% |
| !! | TATTCTTATTACTAGTGTTA+TGG | - | chr2_2:4065293-4065312 | Msa0231780:intron | 20.0% |
| !! | ATTCTTATTACTAGTGTTAT+GGG | - | chr2_2:4065294-4065313 | Msa0231780:intron | 20.0% |
| !!! | TTGAATGAAATTTTTGAGTC+CGG | - | chr2_2:4061072-4061091 | Msa0231780:three_prime_UTR | 25.0% |
| ! | TTCTCTAGATCTATTTATTC+TGG | - | chr2_2:4061237-4061256 | Msa0231780:three_prime_UTR | 25.0% |
| ! | TCTCTAGATCTATTTATTCT+GGG | - | chr2_2:4061238-4061257 | Msa0231780:three_prime_UTR | 25.0% |
| ! | AATTTGTAAGCATAGTAATG+AGG | - | chr2_2:4061473-4061492 | Msa0231780:CDS | 25.0% |
| !! | TATTTGTGTTTTGCAGATAA+AGG | - | chr2_2:4061574-4061593 | Msa0231780:CDS | 25.0% |
| !! | ATTTGTGTTTTGCAGATAAA+GGG | - | chr2_2:4061575-4061594 | Msa0231780:CDS | 25.0% |
| !!! | ATTAACTAGCAAGTTTTATG+AGG | - | chr2_2:4061636-4061655 | Msa0231780:CDS | 25.0% |
| ! | GTAAGATAAGCATAATGTAA+GGG | + | chr2_2:4061680-4061699 | None:intergenic | 25.0% |
| ! | TGTAAGATAAGCATAATGTA+AGG | + | chr2_2:4061681-4061700 | None:intergenic | 25.0% |
| ! | AAAAGGTTGCATATATCAAA+GGG | + | chr2_2:4061752-4061771 | None:intergenic | 25.0% |
| ! | AAAAAGGTTGCATATATCAA+AGG | + | chr2_2:4061753-4061772 | None:intergenic | 25.0% |
| ! | AACTAAAGTTGCATATATCA+AGG | + | chr2_2:4061789-4061808 | None:intergenic | 25.0% |
| ! | TTGATATATGCAACTTTAGT+TGG | - | chr2_2:4061788-4061807 | Msa0231780:CDS | 25.0% |
| !!! | TTTTTGGATAGTATTTTGGT+AGG | - | chr2_2:4062090-4062109 | Msa0231780:CDS | 25.0% |
| ! | ACAAAAGAGATACTTATTCT+TGG | - | chr2_2:4062226-4062245 | Msa0231780:intron | 25.0% |
| ! | CAAAAGAGATACTTATTCTT+GGG | - | chr2_2:4062227-4062246 | Msa0231780:intron | 25.0% |
| ! | ATGACATCAAATAGTAATTC+CGG | + | chr2_2:4062440-4062459 | None:intergenic | 25.0% |
| !!! | GTTTAGGTTTTTTAAGTTAC+TGG | - | chr2_2:4062935-4062954 | Msa0231780:intron | 25.0% |
| ! | ATGAATATTTGTGCATATGT+TGG | - | chr2_2:4062962-4062981 | Msa0231780:intron | 25.0% |
| !! | AATGTCTGATTTTTATGCAT+TGG | + | chr2_2:4063078-4063097 | None:intergenic | 25.0% |
| ! | CAAAAGGAAATAAATCTTCA+CGG | + | chr2_2:4063130-4063149 | None:intergenic | 25.0% |
| !!! | ATTTCTAAAGTTTTGATGCT+AGG | - | chr2_2:4063259-4063278 | Msa0231780:intron | 25.0% |
| !!! | TTTCTAAAGTTTTGATGCTA+GGG | - | chr2_2:4063260-4063279 | Msa0231780:intron | 25.0% |
| ! | AGATCAAGTAATACTTACAT+TGG | - | chr2_2:4063497-4063516 | Msa0231780:intron | 25.0% |
| ! | TTCTACTCTTAAAACTACTA+TGG | - | chr2_2:4063605-4063624 | Msa0231780:intron | 25.0% |
| !!! | TTAGAATGCATTTTGATAGT+CGG | + | chr2_2:4063640-4063659 | None:intergenic | 25.0% |
| !!! | GACTAATTTGTCTTTTTGTT+TGG | + | chr2_2:4063902-4063921 | None:intergenic | 25.0% |
| ! | ATGTTATTATCACTTATCAG+AGG | - | chr2_2:4064297-4064316 | Msa0231780:CDS | 25.0% |
| ! | TCAGAGGTAATAAATAATCT+AGG | - | chr2_2:4064313-4064332 | Msa0231780:CDS | 25.0% |
| ! | AGAATAATCTTATCATGTTC+CGG | + | chr2_2:4065063-4065082 | None:intergenic | 25.0% |
| ! | GATAAGATTATTCTGCAATT+CGG | - | chr2_2:4065069-4065088 | Msa0231780:intron | 25.0% |
| !! | GTTTGATTAGTTCACTTTAA+AGG | + | chr2_2:4065228-4065247 | None:intergenic | 25.0% |
| ! | AAAGTGAACTAATCAAACTT+TGG | - | chr2_2:4065230-4065249 | Msa0231780:intron | 25.0% |
| ! | TATGTTGTAACCTATGTATT+AGG | - | chr2_2:4065352-4065371 | Msa0231780:intron | 25.0% |
| ! | ATGTTGTAACCTATGTATTA+GGG | - | chr2_2:4065353-4065372 | Msa0231780:intron | 25.0% |
| !!! | TATAATAGTTTGTTGGTACA+AGG | + | chr2_2:4065453-4065472 | None:intergenic | 25.0% |
| ! | TTGTACCAACAAACTATTAT+AGG | - | chr2_2:4065452-4065471 | Msa0231780:five_prime_UTR | 25.0% |
| !! | CATAACCTATAATAGTTTGT+TGG | + | chr2_2:4065460-4065479 | None:intergenic | 25.0% |
| !!! | TGAATGAAATTTTTGAGTCC+GGG | - | chr2_2:4061073-4061092 | Msa0231780:three_prime_UTR | 30.0% |
| TCAGAAAATGCTAACATACT+CGG | + | chr2_2:4061145-4061164 | None:intergenic | 30.0% | |
| AGCAGAATGATAAAAGCTTT+AGG | + | chr2_2:4061168-4061187 | None:intergenic | 30.0% | |
| !!! | CTGATTTGGTTCTTAGTTTT+TGG | - | chr2_2:4062074-4062093 | Msa0231780:CDS | 30.0% |
| !! | AGTTTTGATGTCAAACTTAC+TGG | - | chr2_2:4062323-4062342 | Msa0231780:intron | 30.0% |
| !! | CAGCTATTTTGAATTACAAG+AGG | + | chr2_2:4062401-4062420 | None:intergenic | 30.0% |
| TTGTAATTCAAAATAGCTGC+TGG | - | chr2_2:4062402-4062421 | Msa0231780:intron | 30.0% | |
| TGTAATTCAAAATAGCTGCT+GGG | - | chr2_2:4062403-4062422 | Msa0231780:intron | 30.0% | |
| TGACATCAAATAGTAATTCC+GGG | + | chr2_2:4062439-4062458 | None:intergenic | 30.0% | |
| ! | TAAAAGCATATAAACCCACT+AGG | + | chr2_2:4062851-4062870 | None:intergenic | 30.0% |
| !! | TTCCTTTTGTGATTGATTCT+AGG | - | chr2_2:4063141-4063160 | Msa0231780:CDS | 30.0% |
| TTCTTTGATGTCCATTACAT+CGG | - | chr2_2:4063179-4063198 | Msa0231780:CDS | 30.0% | |
| ATACTTACATTGGAAAACTG+AGG | - | chr2_2:4063507-4063526 | Msa0231780:intron | 30.0% | |
| TTAACATAGTAGATGAGAGA+AGG | + | chr2_2:4063559-4063578 | None:intergenic | 30.0% | |
| CTGAAATTCATTGCAACTTT+GGG | + | chr2_2:4063696-4063715 | None:intergenic | 30.0% | |
| ACTGAAATTCATTGCAACTT+TGG | + | chr2_2:4063697-4063716 | None:intergenic | 30.0% | |
| AAGTTGCAATGAATTTCAGT+TGG | - | chr2_2:4063697-4063716 | Msa0231780:intron | 30.0% | |
| GTACAGTAAATGTAAACAAG+AGG | - | chr2_2:4064020-4064039 | Msa0231780:CDS | 30.0% | |
| TTGGGACCGAAAATTATAAA+GGG | - | chr2_2:4064113-4064132 | Msa0231780:CDS | 30.0% | |
| ! | GGAGATCCCTTTATAATTTT+CGG | + | chr2_2:4064122-4064141 | None:intergenic | 30.0% |
| GAAGATATGAATAGCAAACA+AGG | + | chr2_2:4064384-4064403 | None:intergenic | 30.0% | |
| ATATCTTCAAGACCATTTAC+TGG | - | chr2_2:4064396-4064415 | Msa0231780:five_prime_UTR | 30.0% | |
| TATCTTCAAGACCATTTACT+GGG | - | chr2_2:4064397-4064416 | Msa0231780:five_prime_UTR | 30.0% | |
| AACAGAAAAAACCCAGTAAA+TGG | + | chr2_2:4064411-4064430 | None:intergenic | 30.0% | |
| ACATATGAACTAAATGTGCT+CGG | - | chr2_2:4064646-4064665 | Msa0231780:intron | 30.0% | |
| TAAAGGATATCGATAATCCA+TGG | + | chr2_2:4065118-4065137 | None:intergenic | 30.0% | |
| TTAAGCATATTGCAAAAGCT+TGG | + | chr2_2:4065149-4065168 | None:intergenic | 30.0% | |
| TTTAATCATGAAGCAAAGAG+AGG | - | chr2_2:4065202-4065221 | Msa0231780:intron | 30.0% | |
| AACTAATCAAACTTTGGTGA+TGG | - | chr2_2:4065236-4065255 | Msa0231780:intron | 30.0% | |
| ATTACTAGTGTTATGGGATT+AGG | - | chr2_2:4065300-4065319 | Msa0231780:intron | 30.0% | |
| ! | TGCTTTAAACCCTAATACAT+AGG | + | chr2_2:4065365-4065384 | None:intergenic | 30.0% |
| !!! | CAAATTGTCATTTTAGACAC+AGG | + | chr2_2:4065518-4065537 | None:intergenic | 30.0% |
| TCTCAGCTTCATACAATACA+AGG | - | chr2_2:4061211-4061230 | Msa0231780:three_prime_UTR | 35.0% | |
| CTCAGCTTCATACAATACAA+GGG | - | chr2_2:4061212-4061231 | Msa0231780:three_prime_UTR | 35.0% | |
| ! | TTCTTCAAATCTGAAGCCTT+TGG | - | chr2_2:4061332-4061351 | Msa0231780:three_prime_UTR | 35.0% |
| CTTACATGTGTTAACGATGA+TGG | - | chr2_2:4061695-4061714 | Msa0231780:CDS | 35.0% | |
| ! | TTTTGCTTCTACGTACTTAG+GGG | + | chr2_2:4061932-4061951 | None:intergenic | 35.0% |
| ! | GTTTTGCTTCTACGTACTTA+GGG | + | chr2_2:4061933-4061952 | None:intergenic | 35.0% |
| ! | TGTTTTGCTTCTACGTACTT+AGG | + | chr2_2:4061934-4061953 | None:intergenic | 35.0% |
| TTTGCATTTGATTCATGGCT+AGG | - | chr2_2:4062005-4062024 | Msa0231780:CDS | 35.0% | |
| ATATCGGAAGCTTTCTGATT+TGG | - | chr2_2:4062060-4062079 | Msa0231780:CDS | 35.0% | |
| GAACTGATACTCTTCTTTGA+TGG | - | chr2_2:4062159-4062178 | Msa0231780:intron | 35.0% | |
| ! | TCTCTTTTGTGAACTTCTGA+TGG | + | chr2_2:4062216-4062235 | None:intergenic | 35.0% |
| TTATTCTTGGGATTCTACTC+CGG | - | chr2_2:4062239-4062258 | Msa0231780:intron | 35.0% | |
| !!! | ATAGTTTTGGGAGCTTATCT+AGG | - | chr2_2:4062297-4062316 | Msa0231780:intron | 35.0% |
| ACATCAAATAGTAATTCCGG+GGG | + | chr2_2:4062437-4062456 | None:intergenic | 35.0% | |
| GACATCAAATAGTAATTCCG+GGG | + | chr2_2:4062438-4062457 | None:intergenic | 35.0% | |
| TATAAACCCACTAGGTAACT+AGG | + | chr2_2:4062843-4062862 | None:intergenic | 35.0% | |
| ! | CTTTTATGTTCAGATGCTTC+TGG | - | chr2_2:4062865-4062884 | Msa0231780:intron | 35.0% |
| ! | ATTTGTGCATATGTTGGTTG+TGG | - | chr2_2:4062968-4062987 | Msa0231780:intron | 35.0% |
| CTCCTAGAATCAATCACAAA+AGG | + | chr2_2:4063146-4063165 | None:intergenic | 35.0% | |
| TCTTTGATGTCCATTACATC+GGG | - | chr2_2:4063180-4063199 | Msa0231780:CDS | 35.0% | |
| !! | TTTGACTTTTGCAGCTTTGT+TGG | - | chr2_2:4063382-4063401 | Msa0231780:intron | 35.0% |
| AATTCCTTCTTTCTGCTAAG+AGG | - | chr2_2:4063417-4063436 | Msa0231780:intron | 35.0% | |
| TGAAATCACATACTCAGTGT+AGG | + | chr2_2:4063456-4063475 | None:intergenic | 35.0% | |
| CACTGAGTATGTGATTTCAA+TGG | - | chr2_2:4063457-4063476 | Msa0231780:intron | 35.0% | |
| !!! | GATTCTGCTGTTTTACTTCT+GGG | + | chr2_2:4063665-4063684 | None:intergenic | 35.0% |
| !!! | TGATTCTGCTGTTTTACTTC+TGG | + | chr2_2:4063666-4063685 | None:intergenic | 35.0% |
| ACTACTGTGTTCATATGCAT+TGG | - | chr2_2:4063976-4063995 | Msa0231780:intron | 35.0% | |
| CTTGGGACCGAAAATTATAA+AGG | - | chr2_2:4064112-4064131 | Msa0231780:CDS | 35.0% | |
| !!! | TTTTTTACATTGGCCCAAGT+CGG | - | chr2_2:4064181-4064200 | Msa0231780:CDS | 35.0% |
| GAATATCTGCATCACATAAG+TGG | + | chr2_2:4064362-4064381 | None:intergenic | 35.0% | |
| TACACCAGATCAAACTTTCT+TGG | - | chr2_2:4064481-4064500 | Msa0231780:intron | 35.0% | |
| TGTTCCAAGAAAGTTTGATC+TGG | + | chr2_2:4064488-4064507 | None:intergenic | 35.0% | |
| !! | GAGCCGTAGATTTTCTAAAA+AGG | - | chr2_2:4064579-4064598 | Msa0231780:intron | 35.0% |
| !! | TTCTAAAAAGGTATCGCCAA+AGG | - | chr2_2:4064591-4064610 | Msa0231780:intron | 35.0% |
| TAATGCAATGCATCTTCCTT+GGG | + | chr2_2:4064681-4064700 | None:intergenic | 35.0% | |
| ATAATGCAATGCATCTTCCT+TGG | + | chr2_2:4064682-4064701 | None:intergenic | 35.0% | |
| TGTAATTGTTCATGCCATCT+TGG | + | chr2_2:4064925-4064944 | None:intergenic | 35.0% | |
| ATAATCTTATCATGTTCCGG+TGG | + | chr2_2:4065060-4065079 | None:intergenic | 35.0% | |
| AAAGCTTGGAATGCAGATAA+AGG | + | chr2_2:4065135-4065154 | None:intergenic | 35.0% | |
| AAACTATTCACAAGCCAACT+TGG | + | chr2_2:4065184-4065203 | None:intergenic | 35.0% | |
| ATGTTGCTGTGTTTCTTTCT+CGG | - | chr2_2:4065398-4065417 | Msa0231780:five_prime_UTR | 35.0% | |
| TTGTTGGTACAAGGATAACA+TGG | + | chr2_2:4065444-4065463 | None:intergenic | 35.0% | |
| !! | GTGATCTAGCTTAGGAGTTT+TGG | - | chr2_2:4061604-4061623 | Msa0231780:CDS | 40.0% |
| GGTTTATGGAACACCTTACA+AGG | + | chr2_2:4061860-4061879 | None:intergenic | 40.0% | |
| TTTGCTTCTACGTACTTAGG+GGG | + | chr2_2:4061931-4061950 | None:intergenic | 40.0% | |
| AACCAACCAGTACAAGCATA+TGG | + | chr2_2:4062188-4062207 | None:intergenic | 40.0% | |
| TATGCTACGGAAAGACATTC+CGG | + | chr2_2:4062261-4062280 | None:intergenic | 40.0% | |
| ! | GTGACGTTCGTGATAGTTTT+GGG | - | chr2_2:4062285-4062304 | Msa0231780:intron | 40.0% |
| GAGACTTTCCTCTATGATGA+TGG | + | chr2_2:4062349-4062368 | None:intergenic | 40.0% | |
| CATCATAGAGGAAAGTCTCA+TGG | - | chr2_2:4062350-4062369 | Msa0231780:intron | 40.0% | |
| ! | AAAGTCTCATGGTTCTGTAC+AGG | - | chr2_2:4062361-4062380 | Msa0231780:intron | 40.0% |
| TAGAGGAGAGTGAGAATACA+TGG | - | chr2_2:4062468-4062487 | Msa0231780:intron | 40.0% | |
| GCAACTACATGCTTTCTTGA+AGG | + | chr2_2:4062494-4062513 | None:intergenic | 40.0% | |
| TAAGTTTGCCACAGAACTCT+GGG | + | chr2_2:4062571-4062590 | None:intergenic | 40.0% | |
| !! | TTCGTTTCACTTTTCAGCCA+GGG | - | chr2_2:4062715-4062734 | Msa0231780:intron | 40.0% |
| ! | GCGTCAATGAAGATTTGTTC+TGG | - | chr2_2:4063009-4063028 | Msa0231780:intron | 40.0% |
| ! | GTGATTGATTCTAGGAGTCT+TGG | - | chr2_2:4063149-4063168 | Msa0231780:CDS | 40.0% |
| CTTTGATGTCCATTACATCG+GGG | - | chr2_2:4063181-4063200 | Msa0231780:CDS | 40.0% | |
| TTTGATGTCCATTACATCGG+GGG | - | chr2_2:4063182-4063201 | Msa0231780:CDS | 40.0% | |
| !! | GCAGCTTTGTTGGTTGAAAA+TGG | - | chr2_2:4063392-4063411 | Msa0231780:intron | 40.0% |
| CTAATTTACGTTGAGTCCCA+AGG | + | chr2_2:4063954-4063973 | None:intergenic | 40.0% | |
| ! | TTTTTACATTGGCCCAAGTC+GGG | - | chr2_2:4064182-4064201 | Msa0231780:CDS | 40.0% |
| CTATGTTGTAACTCCCAGAT+GGG | + | chr2_2:4064618-4064637 | None:intergenic | 40.0% | |
| ACTTCGAAAATGAGATGCTC+CGG | + | chr2_2:4064792-4064811 | None:intergenic | 40.0% | |
| TCCTGTAATGAGGATGATGA+CGG | - | chr2_2:4064865-4064884 | Msa0231780:intron | 40.0% | |
| !! | GGCTTGTTTTTCAGAACCAA+AGG | + | chr2_2:4064901-4064920 | None:intergenic | 40.0% |
| TGAAAAACAAGCCTCCAAGA+TGG | - | chr2_2:4064908-4064927 | Msa0231780:intron | 40.0% | |
| AATTGTTCATGCCATCTTGG+AGG | + | chr2_2:4064922-4064941 | None:intergenic | 40.0% | |
| !!! | AGTGCTGGTGCCTTAATTTT+CGG | - | chr2_2:4064944-4064963 | Msa0231780:intron | 40.0% |
| TTACTCGTCCCCGAAAATTA+AGG | + | chr2_2:4064957-4064976 | None:intergenic | 40.0% | |
| ATTCTGCAATTCGGCAAAGT+TGG | - | chr2_2:4065078-4065097 | Msa0231780:intron | 40.0% | |
| TTCTGCAATTCGGCAAAGTT+GGG | - | chr2_2:4065079-4065098 | Msa0231780:intron | 40.0% | |
| TGGGAAAGATATGTTCACCA+TGG | - | chr2_2:4065098-4065117 | Msa0231780:intron | 40.0% | |
| CAGCATCTGAGCAATAACAA+TGG | + | chr2_2:4065326-4065345 | None:intergenic | 40.0% | |
| TCTTCTCTCACTCTTGTACC+CGG | + | chr2_2:4061094-4061113 | None:intergenic | 45.0% | |
| AGAGAAGAGAGAGAGAGATG+AGG | - | chr2_2:4061106-4061125 | Msa0231780:three_prime_UTR | 45.0% | |
| GAGAAGAGAGAGAGAGATGA+GGG | - | chr2_2:4061107-4061126 | Msa0231780:three_prime_UTR | 45.0% | |
| ! | ATCTGAAGCCTTTGGTCAAC+TGG | - | chr2_2:4061340-4061359 | Msa0231780:three_prime_UTR | 45.0% |
| ! | TCTGAAGCCTTTGGTCAACT+GGG | - | chr2_2:4061341-4061360 | Msa0231780:three_prime_UTR | 45.0% |
| ACAGAAACCCAGTTGACCAA+AGG | + | chr2_2:4061351-4061370 | None:intergenic | 45.0% | |
| ! | GGTGCTTTGTGATCTAGCTT+AGG | - | chr2_2:4061596-4061615 | Msa0231780:CDS | 45.0% |
| CATGGCTAGGATGCATAAAC+TGG | - | chr2_2:4062018-4062037 | Msa0231780:CDS | 45.0% | |
| ! | AGCCATATGCTTGTACTGGT+TGG | - | chr2_2:4062183-4062202 | Msa0231780:intron | 45.0% |
| GAACGTCACGAACTATGCTA+CGG | + | chr2_2:4062274-4062293 | None:intergenic | 45.0% | |
| ! | CGTGACGTTCGTGATAGTTT+TGG | - | chr2_2:4062284-4062303 | Msa0231780:intron | 45.0% |
| CTTACTGGCCATCATCATAG+AGG | - | chr2_2:4062338-4062357 | Msa0231780:intron | 45.0% | |
| TGCACATATTCCTCCAAGAC+TGG | + | chr2_2:4062532-4062551 | None:intergenic | 45.0% | |
| GTCTTGGAGGAATATGTGCA+AGG | - | chr2_2:4062532-4062551 | Msa0231780:intron | 45.0% | |
| GTAAGTTTGCCACAGAACTC+TGG | + | chr2_2:4062572-4062591 | None:intergenic | 45.0% | |
| TTTGCAACCAACCTGCTTCA+GGG | + | chr2_2:4062606-4062625 | None:intergenic | 45.0% | |
| ATTTGCAACCAACCTGCTTC+AGG | + | chr2_2:4062607-4062626 | None:intergenic | 45.0% | |
| !! | GTTCGTTTCACTTTTCAGCC+AGG | - | chr2_2:4062714-4062733 | Msa0231780:intron | 45.0% |
| CATTGAATGATTCCGTCTCG+TGG | + | chr2_2:4062741-4062760 | None:intergenic | 45.0% | |
| CTTACGCCTAGTTACCTAGT+GGG | - | chr2_2:4062834-4062853 | Msa0231780:intron | 45.0% | |
| TTGATGTCCATTACATCGGG+GGG | - | chr2_2:4063183-4063202 | Msa0231780:CDS | 45.0% | |
| TGGTCCTCTTAGCAGAAAGA+AGG | + | chr2_2:4063424-4063443 | None:intergenic | 45.0% | |
| TTCTTTCTGCTAAGAGGACC+AGG | - | chr2_2:4063423-4063442 | Msa0231780:intron | 45.0% | |
| CGCTGCAACGTAATTCTAAG+AGG | + | chr2_2:4063929-4063948 | None:intergenic | 45.0% | |
| AATTACGTTGCAGCGAACCT+TGG | - | chr2_2:4063934-4063953 | Msa0231780:intron | 45.0% | |
| ATTACGTTGCAGCGAACCTT+GGG | - | chr2_2:4063935-4063954 | Msa0231780:intron | 45.0% | |
| ! | CATATATGGGCAGAAGTGCA+GGG | + | chr2_2:4064538-4064557 | None:intergenic | 45.0% |
| ! | ACATATATGGGCAGAAGTGC+AGG | + | chr2_2:4064539-4064558 | None:intergenic | 45.0% |
| AGTCCCTGGAGGACATATAT+GGG | + | chr2_2:4064551-4064570 | None:intergenic | 45.0% | |
| ATATATGTCCTCCAGGGACT+GGG | - | chr2_2:4064551-4064570 | Msa0231780:intron | 45.0% | |
| GCTATGTTGTAACTCCCAGA+TGG | + | chr2_2:4064619-4064638 | None:intergenic | 45.0% | |
| TGGGAGTTACAACATAGCTC+AGG | - | chr2_2:4064621-4064640 | Msa0231780:intron | 45.0% | |
| !! | CCAGCATCAAGTGCTGAATT+TGG | + | chr2_2:4064715-4064734 | None:intergenic | 45.0% |
| CCAAATTCAGCACTTGATGC+TGG | - | chr2_2:4064712-4064731 | Msa0231780:intron | 45.0% | |
| AATTCAGCACTTGATGCTGG+CGG | - | chr2_2:4064715-4064734 | Msa0231780:intron | 45.0% | |
| !!! | AGTGCACGGTTTTCTGAGAT+TGG | - | chr2_2:4064838-4064857 | Msa0231780:intron | 45.0% |
| !!! | GTGCACGGTTTTCTGAGATT+GGG | - | chr2_2:4064839-4064858 | Msa0231780:intron | 45.0% |
| !!! | TGCACGGTTTTCTGAGATTG+GGG | - | chr2_2:4064840-4064859 | Msa0231780:intron | 45.0% |
| GGCATGAACAATTACAGTGC+TGG | - | chr2_2:4064929-4064948 | Msa0231780:intron | 45.0% | |
| !! | GTGCTGGTGCCTTAATTTTC+GGG | - | chr2_2:4064945-4064964 | Msa0231780:intron | 45.0% |
| ! | TGCTGGTGCCTTAATTTTCG+GGG | - | chr2_2:4064946-4064965 | Msa0231780:intron | 45.0% |
| ! | AAGCAGCTTTGACACCAAGT+TGG | - | chr2_2:4065167-4065186 | Msa0231780:intron | 45.0% |
| GTACAAGGATAACATGGCCT+TGG | + | chr2_2:4065438-4065457 | None:intergenic | 45.0% | |
| !! | AAAAAAAATAATAATAACTT+TGG | + | chr2_2:4061282-4061301 | None:intergenic | 5.0% |
| !!! | ATAATAAGATAATAATTTTT+CGG | + | chr2_2:4064144-4064163 | None:intergenic | 5.0% |
| AAGAGAGAGAGAGATGAGGG+AGG | - | chr2_2:4061110-4061129 | Msa0231780:three_prime_UTR | 50.0% | |
| TGGCAGCCATATGCTTGTAC+TGG | - | chr2_2:4062179-4062198 | Msa0231780:intron | 50.0% | |
| TGATGTCATTCGGCGACTAG+AGG | - | chr2_2:4062451-4062470 | Msa0231780:intron | 50.0% | |
| GTGCTTCTGTTTGCCAGTCT+TGG | - | chr2_2:4062516-4062535 | Msa0231780:intron | 50.0% | |
| CTTCTGTTTGCCAGTCTTGG+AGG | - | chr2_2:4062519-4062538 | Msa0231780:intron | 50.0% | |
| GTTAAGAGCCCAGAGTTCTG+TGG | - | chr2_2:4062560-4062579 | Msa0231780:intron | 50.0% | |
| GGCTCAGACAAAGGAATAGG+TGG | + | chr2_2:4062797-4062816 | None:intergenic | 50.0% | |
| CAGGGCTCAGACAAAGGAAT+AGG | + | chr2_2:4062800-4062819 | None:intergenic | 50.0% | |
| CTATTCCTTTGTCTGAGCCC+TGG | - | chr2_2:4062798-4062817 | Msa0231780:intron | 50.0% | |
| !! | TAAGCGAAGAGCGCTTACCA+GGG | + | chr2_2:4062818-4062837 | None:intergenic | 50.0% |
| GCTTACGCCTAGTTACCTAG+TGG | - | chr2_2:4062833-4062852 | Msa0231780:intron | 50.0% | |
| TGATGTCCATTACATCGGGG+GGG | - | chr2_2:4063184-4063203 | Msa0231780:CDS | 50.0% | |
| CTCAGTGTAGGTTGTTCTCC+TGG | + | chr2_2:4063444-4063463 | None:intergenic | 50.0% | |
| AATTTGTCCGGTCCCGACTT+GGG | + | chr2_2:4064197-4064216 | None:intergenic | 50.0% | |
| AAATTTGTCCGGTCCCGACT+TGG | + | chr2_2:4064198-4064217 | None:intergenic | 50.0% | |
| TCTGCCCATATATGTCCTCC+AGG | - | chr2_2:4064544-4064563 | Msa0231780:intron | 50.0% | |
| CTGCCCATATATGTCCTCCA+GGG | - | chr2_2:4064545-4064564 | Msa0231780:intron | 50.0% | |
| CAGTCCCTGGAGGACATATA+TGG | + | chr2_2:4064552-4064571 | None:intergenic | 50.0% | |
| CATATATGTCCTCCAGGGAC+TGG | - | chr2_2:4064550-4064569 | Msa0231780:intron | 50.0% | |
| TATCGCCAAAGGTCCCATCT+GGG | - | chr2_2:4064602-4064621 | Msa0231780:intron | 50.0% | |
| TAACTCCCAGATGGGACCTT+TGG | + | chr2_2:4064610-4064629 | None:intergenic | 50.0% | |
| CTAAATGTGCTCGGAACTCG+AGG | - | chr2_2:4064655-4064674 | Msa0231780:intron | 50.0% | |
| !! | TGAATTAGCTCTGGCTGTCC+AGG | + | chr2_2:4064748-4064767 | None:intergenic | 50.0% |
| AGGGAACGGTGAATTAGCTC+TGG | + | chr2_2:4064757-4064776 | None:intergenic | 50.0% | |
| GCTAATTCACCGTTCCCTAG+AGG | - | chr2_2:4064759-4064778 | Msa0231780:intron | 50.0% | |
| ! | GGAATGAGTCCTCTAGGGAA+CGG | + | chr2_2:4064771-4064790 | None:intergenic | 50.0% |
| GTTCCCTAGAGGACTCATTC+CGG | - | chr2_2:4064770-4064789 | Msa0231780:intron | 50.0% | |
| !!! | GCACGGTTTTCTGAGATTGG+GGG | - | chr2_2:4064841-4064860 | Msa0231780:intron | 50.0% |
| GATTGGGGGATCCTGTAATG+AGG | - | chr2_2:4064855-4064874 | Msa0231780:intron | 50.0% | |
| GCCGTCATCATCCTCATTAC+AGG | + | chr2_2:4064869-4064888 | None:intergenic | 50.0% | |
| TGACGGCAAGATGAGACCTT+TGG | - | chr2_2:4064882-4064901 | Msa0231780:intron | 50.0% | |
| TTATCATGTTCCGGTGGTGC+TGG | + | chr2_2:4065054-4065073 | None:intergenic | 50.0% | |
| CGGTAGATTCATGCGTACCA+AGG | - | chr2_2:4065418-4065437 | Msa0231780:five_prime_UTR | 50.0% | |
| CAACCTGCTTCAGGGACACA+GGG | + | chr2_2:4062598-4062617 | None:intergenic | 55.0% | |
| GCTTACCAGGGCTCAGACAA+AGG | + | chr2_2:4062806-4062825 | None:intergenic | 55.0% | |
| !! | GTAAGCGAAGAGCGCTTACC+AGG | + | chr2_2:4062819-4062838 | None:intergenic | 55.0% |
| ! | ATATGGGCAGAAGTGCAGGG+AGG | + | chr2_2:4064535-4064554 | None:intergenic | 55.0% |
| GTATCGCCAAAGGTCCCATC+TGG | - | chr2_2:4064601-4064620 | Msa0231780:intron | 55.0% | |
| GCTCCGGAATGAGTCCTCTA+GGG | + | chr2_2:4064776-4064795 | None:intergenic | 55.0% | |
| TGCTCCGGAATGAGTCCTCT+AGG | + | chr2_2:4064777-4064796 | None:intergenic | 55.0% | |
| CCATCGAGTTCAGCAGTGCA+CGG | - | chr2_2:4064824-4064843 | Msa0231780:intron | 55.0% | |
| !! | GGTGCTGGTTGAGATGGTGT+CGG | + | chr2_2:4065039-4065058 | None:intergenic | 55.0% |
| ACCATCTCAACCAGCACCAC+CGG | - | chr2_2:4065041-4065060 | Msa0231780:intron | 55.0% | |
| GTTCCCTGTGTCCCTGAAGC+AGG | - | chr2_2:4062592-4062611 | Msa0231780:intron | 60.0% | |
| CCAACCTGCTTCAGGGACAC+AGG | + | chr2_2:4062599-4062618 | None:intergenic | 60.0% | |
| CCTGTGTCCCTGAAGCAGGT+TGG | - | chr2_2:4062596-4062615 | Msa0231780:intron | 60.0% | |
| TTTCAGCCAGGGCCACGAGA+CGG | - | chr2_2:4062726-4062745 | Msa0231780:intron | 60.0% | |
| ATGATTCCGTCTCGTGGCCC+TGG | + | chr2_2:4062735-4062754 | None:intergenic | 60.0% | |
| GCATTGCCCCCCCGATGTAA+TGG | + | chr2_2:4063193-4063212 | None:intergenic | 60.0% | |
| ACATTGGCCCAAGTCGGGAC+CGG | - | chr2_2:4064187-4064206 | Msa0231780:CDS | 60.0% | |
| CCGTGCACTGCTGAACTCGA+TGG | + | chr2_2:4064827-4064846 | None:intergenic | 60.0% | |
| CTTCCACCCAACCACCTGCT+GGG | - | chr2_2:4065010-4065029 | Msa0231780:intron | 60.0% | |
| TTCCACCCAACCACCTGCTG+GGG | - | chr2_2:4065011-4065030 | Msa0231780:intron | 60.0% | |
| !! | TCCGGTGGTGCTGGTTGAGA+TGG | + | chr2_2:4065045-4065064 | None:intergenic | 60.0% |
| CTCGTCTTCCCAGTCCCTGG+AGG | + | chr2_2:4064562-4064581 | None:intergenic | 65.0% | |
| TGCTCGGAACTCGAGGCCCA+AGG | - | chr2_2:4064662-4064681 | Msa0231780:intron | 65.0% | |
| GATGCTGGCGGCTCTGTTCC+TGG | - | chr2_2:4064727-4064746 | Msa0231780:intron | 65.0% | |
| GCTTCCACCCAACCACCTGC+TGG | - | chr2_2:4065009-4065028 | Msa0231780:intron | 65.0% | |
| CTGCTGGGCGAACTTGCCCC+CGG | - | chr2_2:4062418-4062437 | Msa0231780:intron | 70.0% | |
| CGGCTCGTCTTCCCAGTCCC+TGG | + | chr2_2:4064565-4064584 | None:intergenic | 70.0% | |
| CGCCCCAGCAGGTGGTTGGG+TGG | + | chr2_2:4065016-4065035 | None:intergenic | 75.0% | |
| CGGCGCCCCAGCAGGTGGTT+GGG | + | chr2_2:4065019-4065038 | None:intergenic | 75.0% | |
| TCGGCGCCCCAGCAGGTGGT+TGG | + | chr2_2:4065020-4065039 | None:intergenic | 75.0% | |
| !! | GATGGTGTCGGCGCCCCAGC+AGG | + | chr2_2:4065027-4065046 | None:intergenic | 75.0% |
| !!! | GGTGTCGGCGCCCCAGCAGG+TGG | + | chr2_2:4065024-4065043 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 4061064 | 4065549 | 4061064 | ID=Msa0231780;Name=Msa0231780 |
| chr2_2 | mRNA | 4061064 | 4065549 | 4061064 | ID=Msa0231780-mRNA-1;Parent=Msa0231780;Name=Msa0231780-mRNA-1;_AED=0.05;_eAED=0.05;_QI=342|1|1|1|0.6|0.5|6|349|427 |
| chr2_2 | exon | 4061064 | 4062124 | 4061064 | ID=Msa0231780-mRNA-1:exon:1660;Parent=Msa0231780-mRNA-1 |
| chr2_2 | exon | 4063085 | 4063217 | 4063085 | ID=Msa0231780-mRNA-1:exon:1659;Parent=Msa0231780-mRNA-1 |
| chr2_2 | exon | 4063794 | 4063881 | 4063794 | ID=Msa0231780-mRNA-1:exon:1658;Parent=Msa0231780-mRNA-1 |
| chr2_2 | exon | 4064000 | 4064428 | 4064000 | ID=Msa0231780-mRNA-1:exon:1657;Parent=Msa0231780-mRNA-1 |
| chr2_2 | exon | 4064956 | 4065023 | 4064956 | ID=Msa0231780-mRNA-1:exon:1656;Parent=Msa0231780-mRNA-1 |
| chr2_2 | exon | 4065354 | 4065549 | 4065354 | ID=Msa0231780-mRNA-1:exon:1655;Parent=Msa0231780-mRNA-1 |
| chr2_2 | five_prime_UTR | 4065354 | 4065549 | 4065354 | ID=Msa0231780-mRNA-1:five_prime_utr;Parent=Msa0231780-mRNA-1 |
| chr2_2 | five_prime_UTR | 4064956 | 4065023 | 4064956 | ID=Msa0231780-mRNA-1:five_prime_utr;Parent=Msa0231780-mRNA-1 |
| chr2_2 | five_prime_UTR | 4064351 | 4064428 | 4064351 | ID=Msa0231780-mRNA-1:five_prime_utr;Parent=Msa0231780-mRNA-1 |
| chr2_2 | CDS | 4064000 | 4064350 | 4064000 | ID=Msa0231780-mRNA-1:cds;Parent=Msa0231780-mRNA-1 |
| chr2_2 | CDS | 4063794 | 4063881 | 4063794 | ID=Msa0231780-mRNA-1:cds;Parent=Msa0231780-mRNA-1 |
| chr2_2 | CDS | 4063085 | 4063217 | 4063085 | ID=Msa0231780-mRNA-1:cds;Parent=Msa0231780-mRNA-1 |
| chr2_2 | CDS | 4061413 | 4062124 | 4061413 | ID=Msa0231780-mRNA-1:cds;Parent=Msa0231780-mRNA-1 |
| chr2_2 | three_prime_UTR | 4061064 | 4061412 | 4061064 | ID=Msa0231780-mRNA-1:three_prime_utr;Parent=Msa0231780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
