AlfalfaGEDB | Msa0232280

M. sativa cultivar zhongmu-4 / Msa0232280

KEGG: -
GO: GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0232280	AES63441.1	96.905	420	13	0	18	437	1	420	0.0	854

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0232280	sp\|O48788\|Y2267_ARATH	42.453	318	172	5	100	416	320	627	6.56e-76	252

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0232280	G7INV2	96.905	420	13	0	18	437	1	420	0.0	854

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0232280	MtrunA17_Chr2g0279071	96.339	437	16	0	1	437	2	438	0.0	810
Msa0232280	MtrunA17_Chr8g0393211	42.056	321	180	4	100	420	346	660	4.57e-80	260
Msa0232280	MtrunA17_Chr1g0209521	37.437	398	236	6	44	433	276	668	6.85e-77	252
Msa0232280	MtrunA17_Chr4g0062911	42.997	307	167	5	102	406	319	619	8.69e-76	249
Msa0232280	MtrunA17_Chr3g0128551	38.310	355	201	6	54	405	276	615	9.33e-76	248
Msa0232280	MtrunA17_Chr3g0108301	41.562	320	177	6	110	427	334	645	1.61e-74	245
Msa0232280	MtrunA17_Chr5g0432851	39.167	360	201	8	51	406	284	629	3.15e-74	244
Msa0232280	MtrunA17_Chr7g0265601	36.337	344	201	6	101	429	349	689	7.00e-74	244
Msa0232280	MtrunA17_Chr8g0388991	44.674	291	156	3	118	407	330	616	1.89e-73	242
Msa0232280	MtrunA17_Chr5g0423121	37.644	348	190	6	87	433	301	622	6.97e-73	241

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0232280	AT2G26730.1	42.453	318	172	5	100	416	320	627	6.67e-77	252
Msa0232280	AT2G36570.1	39.296	341	188	6	94	416	319	658	1.85e-73	243
Msa0232280	AT4G31250.1	36.456	395	218	6	44	406	249	642	1.94e-72	241
Msa0232280	AT1G68400.1	37.500	384	216	8	36	405	264	637	8.40e-72	239
Msa0232280	AT5G58300.3	41.562	320	177	7	89	405	318	630	2.21e-71	238
Msa0232280	AT5G58300.1	41.562	320	177	7	89	405	318	630	2.21e-71	238
Msa0232280	AT5G58300.2	41.562	320	177	7	89	405	318	630	2.21e-71	238
Msa0232280	AT3G17840.1	36.658	371	215	9	51	406	275	640	1.01e-69	233
Msa0232280	AT1G48480.1	35.809	377	209	9	51	405	278	643	5.44e-68	228
Msa0232280	AT5G05160.1	36.389	360	207	10	52	407	278	619	2.55e-65	221

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Find 82 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTCTTTACAACAATGGT+AGG	0.620331	2_2:-4547457	None:intergenic
AAGACTTCAAATTTCCATGA+GGG	0.585520	2_2:-4548161	None:intergenic
AAGAGGATAGAGATAGGAGA+AGG	0.535152	2_2:+4547283	Msa0232280:CDS
AAGAGGCGTGGCTCGAGCAC+TGG	0.469235	2_2:+4548101	Msa0232280:CDS
AAGCTCAACAGAATAGTCAA+AGG	0.628071	2_2:+4547208	Msa0232280:CDS
AATCTTGAGTTCCAATTGAA+TGG	0.366265	2_2:-4548069	None:intergenic
AATTATGGGGAATAGTTATA+AGG	0.391590	2_2:+4547417	Msa0232280:CDS
ACACTTGATGTCAGAAGATG+AGG	0.571768	2_2:+4548617	Msa0232280:CDS
ACCAATAGCAGCTCAACATA+TGG	0.481028	2_2:+4548254	Msa0232280:CDS
ACCATATGTTGAGCTGCTAT+TGG	0.420502	2_2:-4548255	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTTAACCTCTTTACAACAA+TGG	-	chr2_2:4547464-4547483	None:intergenic	30.0%
AGACTTAAAACCATTCACTA+AGG	+	chr2_2:4547483-4547502	Msa0232280:CDS	30.0%
GAAACTTTAACACCAATTAG+TGG	-	chr2_2:4547838-4547857	None:intergenic	30.0%
TGATAAAGTCATGCACAATT+TGG	-	chr2_2:4548025-4548044	None:intergenic	30.0%
AATCTTGAGTTCCAATTGAA+TGG	-	chr2_2:4548072-4548091	None:intergenic	30.0%
AAGACTTCAAATTTCCATGA+GGG	-	chr2_2:4548164-4548183	None:intergenic	30.0%
GTTTACAAATCACCTGAATA+TGG	+	chr2_2:4548279-4548298	Msa0232280:CDS	30.0%
TTTCTTGCATAACCATATTC+AGG	-	chr2_2:4548294-4548313	None:intergenic	30.0%
TTACAATGCAATCAGATGTT+TGG	+	chr2_2:4548316-4548335	Msa0232280:CDS	30.0%
TAGCAATGAGATGTATTGAA+AGG	+	chr2_2:4548532-4548551	Msa0232280:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	4547001	4548722	4547001	ID=Msa0232280;Name=Msa0232280
chr2_2	mRNA	4547001	4548722	4547001	ID=Msa0232280-mRNA-1;Parent=Msa0232280;Name=Msa0232280-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0\|0\|0\|1\|1\|1\|2\|0\|441
chr2_2	exon	4547001	4547649	4547001	ID=Msa0232280-mRNA-1:exon:1899;Parent=Msa0232280-mRNA-1
chr2_2	exon	4548046	4548722	4548046	ID=Msa0232280-mRNA-1:exon:1900;Parent=Msa0232280-mRNA-1
chr2_2	CDS	4547001	4547649	4547001	ID=Msa0232280-mRNA-1:cds;Parent=Msa0232280-mRNA-1
chr2_2	CDS	4548046	4548722	4548046	ID=Msa0232280-mRNA-1:cds;Parent=Msa0232280-mRNA-1

Gene Sequence

>Msa0232280

ATGAGGTTTCCCCTTTTTGTTCTTCAACTTGTTGCTTTTTCAGTTCTTGCAATGGCTCAAGAAGGACCTAAAGGGGATAGTGAAGTCCAAAATAAATCTTCGGACGATAAAAACAACAACAATTCCAATCTTTTATTATTAATACTCAACGTGGTTCTTCTTCTTGCAATTATATTGCTATTGATTCTTTACTATAACACATCAAAAAAGCTCAACAGAATAGTCAAAGGACACATTAACACATTTCATGAACAAGAGAAAGATGTTGAAACAAGTATTGAGAAGAGGATAGAGATAGGAGAAGGAACAACAATGATGACAGTAGAAGAGAGAAAGGAGTTAATGTTCTTTAATGATGAGACAAAATTTCAAATGGGAGAACTTCTTAGAGCTTCTGCTGAGGCATTAGGTCATGGAATTATGGGGAATAGTTATAAGGCTATGTTGAATAATGGACCTACCATTGTTGTAAAGAGGTTAAGAGACTTAAAACCATTCACTAAGGAGGAATTTGCAAAGATAGTGAAAATGATTGCTGATCTTAAACACCCTAATTTGTTGCCTTTGCTTGCTTACTATCATTCCAGAGATGAGAAGCTAATGCTCTATAGATATGCACAGAATGGAAACCTTTTCTCACGACTTCATGATGGAAGAGATGGAAACAGGGTTCCATTCAATTGGAACTCAAGATTATCAGTGGCAAGAGGCGTGGCTCGAGCACTGGAATACCTTCACCTCAACAACAAGATCCATAACATTGTCCCTCATGGAAATTTGAAGTCTTCAAATGTACTATTTGATGAAAATGATTCAGTTTTTGTATCTGACTTTAGCCTTGCCGCGTTAATAGCACAACCAATAGCAGCTCAACATATGGTTGTTTACAAATCACCTGAATATGGTTATGCAAGAAAAGTTACAATGCAATCAGATGTTTGGAGTTATGGATCACTTTTAATAGAACTTGTAACTGGGAAAGTTTCTATGTGCTCAGCTCCACAAGGGACTAATGGTGTGGATCTTTGTAGTTGGGTTCATAGAGCTGTGAGAGAAGAATGGACAGCTGAAATATTTGACAAAGAAATATCTTGTCAAAAGAGTGCTCTTCCTGGGATGTTAAGGTTGTTGCAGATAGCAATGAGATGTATTGAAAGGTTCCCAGAGAAACGTCCTGAGATGAAAGAGGTTGTTAGAGAAGTGGAGAAAATACAACAGGTACACTTGATGTCAGAAGATGAGGATGATGTGTCTTGTGATGTGTCTCTAACTGATGATTCCTTTTCAACTAGTAACTCAGGGATGTTTATTGGAGATGAAAGATAG

Protein sequence

>Msa0232280

MRFPLFVLQLVAFSVLAMAQEGPKGDSEVQNKSSDDKNNNNSNLLLLILNVVLLLAIILLLILYYNTSKKLNRIVKGHINTFHEQEKDVETSIEKRIEIGEGTTMMTVEERKELMFFNDETKFQMGELLRASAEALGHGIMGNSYKAMLNNGPTIVVKRLRDLKPFTKEEFAKIVKMIADLKHPNLLPLLAYYHSRDEKLMLYRYAQNGNLFSRLHDGRDGNRVPFNWNSRLSVARGVARALEYLHLNNKIHNIVPHGNLKSSNVLFDENDSVFVSDFSLAALIAQPIAAQHMVVYKSPEYGYARKVTMQSDVWSYGSLLIELVTGKVSMCSAPQGTNGVDLCSWVHRAVREEWTAEIFDKEISCQKSALPGMLRLLQIAMRCIERFPEKRPEMKEVVREVEKIQQVHLMSEDEDDVSCDVSLTDDSFSTSNSGMFIGDER*