AlfalfaGEDB | Msa0233360

M. sativa cultivar zhongmu-4 / Msa0233360

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00643.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0233360	KEH36484.1	90.769	130	4	2	1	130	1	122	6.13e-76	231

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0233360	A0A072V3A1	90.769	130	4	2	1	130	1	122	2.93e-76	231

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TFs/TRs:

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Gene ID	Type	Classification
Msa0233360	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0233360	MtrunA17_Chr2g0280901	90.769	130	4	2	1	130	1	122	5.64e-80	231
Msa0233360	MtrunA17_Chr2g0323271	43.382	136	57	1	1	116	1	136	7.18e-34	117
Msa0233360	MtrunA17_Chr2g0322971	49.153	59	30	0	3	61	29	87	1.48e-13	62.8
Msa0233360	MtrunA17_Chr4g0024021	45.763	59	32	0	5	63	36	94	1.12e-11	58.2
Msa0233360	MtrunA17_Chr4g0002211	46.552	58	31	0	3	60	6	63	5.50e-11	58.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0233360	AT5G54470.1	52.632	95	45	0	2	96	3	97	5.04e-33	115
Msa0233360	AT4G27310.1	46.226	106	57	0	1	106	1	106	1.32e-32	114
Msa0233360	AT3G21890.1	37.778	90	48	2	4	89	30	115	1.04e-11	58.2
Msa0233360	AT3G21150.1	45.902	61	33	0	1	61	1	61	3.12e-11	58.9
Msa0233360	AT4G15248.1	41.176	68	37	1	5	69	32	99	4.71e-11	56.2

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Find 24 sgRNAs with CRISPR-Local

Find 25 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAAATCAAGTGGTTCCA+TGG	0.473604	2_2:+5691962	Msa0233360:CDS
ACAGTGATTGCAAAGGGAGA+TGG	0.619548	2_2:-5691842	None:intergenic
AGATCAAGCAAGCCTTTGTT+GGG	0.466195	2_2:+5691699	Msa0233360:CDS
AGTGACACAGTGATTGCAAA+GGG	0.569368	2_2:-5691848	None:intergenic
ATCATTGTTGTTGTTATTGT+TGG	0.313257	2_2:-5691875	None:intergenic
CAATCTCTAACACCTTGGCA+TGG	0.658549	2_2:+5691796	Msa0233360:CDS
CAGATCAAGCAAGCCTTTGT+TGG	0.420231	2_2:+5691698	Msa0233360:CDS
CAGTGACACAGTGATTGCAA+AGG	0.628505	2_2:-5691849	None:intergenic
CTAACACCTTGGCATGGCAC+TGG	0.516554	2_2:+5691802	Msa0233360:CDS
GAACAAGAAGAAACTGGTGG+TGG	0.609570	2_2:-5691997	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTGTTAGAGATTGACAAATA+TGG	-	chr2_2:5691789-5691808	None:intergenic	30.0%
TTTGAAGAACAAGAAGAAAC+TGG	-	chr2_2:5692006-5692025	None:intergenic	30.0%
GATTCACAAAACAACTTTGC+TGG	-	chr2_2:5691679-5691698	None:intergenic	35.0%
TTTGTCAATCTCTAACACCT+TGG	+	chr2_2:5691791-5691810	Msa0233360:CDS	35.0%
AAGAAAATCAAGTGGTTCCA+TGG	+	chr2_2:5691962-5691981	Msa0233360:CDS	35.0%
AGATCAAGCAAGCCTTTGTT+GGG	+	chr2_2:5691699-5691718	Msa0233360:CDS	40.0%
TAGCATCACATTCCCAACAA+AGG	-	chr2_2:5691714-5691733	None:intergenic	40.0%
TTGTTGGGAATGTGATGCTA+AGG	+	chr2_2:5691714-5691733	Msa0233360:CDS	40.0%
AGTGACACAGTGATTGCAAA+GGG	-	chr2_2:5691851-5691870	None:intergenic	40.0%
GAAGAACAAGAAGAAACTGG+TGG	-	chr2_2:5692003-5692022	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	5691646	5692038	5691646	ID=Msa0233360;Name=Msa0233360
chr2_2	mRNA	5691646	5692038	5691646	ID=Msa0233360-mRNA-1;Parent=Msa0233360;Name=Msa0233360-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|130
chr2_2	exon	5691646	5692038	5691646	ID=Msa0233360-mRNA-1:exon:2496;Parent=Msa0233360-mRNA-1
chr2_2	CDS	5691646	5692038	5691646	ID=Msa0233360-mRNA-1:cds;Parent=Msa0233360-mRNA-1

Gene Sequence

>Msa0233360

ATGAAGAAGAAATGTGAGCTATGCAAAAGTCCAGCAAAGTTGTTTTGTGAATCAGATCAAGCAAGCCTTTGTTGGGAATGTGATGCTAAGGTTCACACTGCAAACTTCATAGTCACAAAGCATCACAGATTTCTTCTCTGCCATATTTGTCAATCTCTAACACCTTGGCATGGCACTGGACCCAAGTTTGTACCCACCATCTCCCTTTGCAATCACTGTGTCACTGCTACCAACAATAACAACAACAATGATGAAGATAATGATCAAGATGATGATGATGATGATGATGATGATACTGAGGATGATGATGATGATGAAGAAAATCAAGTGGTTCCATGGAAATCTACAACTCCACCACCAGTTTCTTCTTGTTCTTCAAATAGTGCAAACTAA

Protein sequence

>Msa0233360

MKKKCELCKSPAKLFCESDQASLCWECDAKVHTANFIVTKHHRFLLCHICQSLTPWHGTGPKFVPTISLCNHCVTATNNNNNNDEDNDQDDDDDDDDDTEDDDDDEENQVVPWKSTTPPPVSSCSSNSAN*