Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0234080 | XP_039685680.1 | 84.856 | 799 | 101 | 3 | 1 | 779 | 1 | 799 | 0.0 | 1392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0234080 | sp|Q9SZL8|FRS5_ARATH | 27.925 | 641 | 382 | 14 | 32 | 665 | 70 | 637 | 1.53e-69 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0234080 | D3YBB9 | 76.456 | 807 | 173 | 4 | 1 | 798 | 49 | 847 | 0.0 | 1283 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0234080 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0234080 | MtrunA17_Chr3g0088371 | 83.152 | 184 | 28 | 1 | 618 | 798 | 1 | 184 | 8.76e-103 | 315 |
| Msa0234080 | MtrunA17_Chr2g0324011 | 30.709 | 635 | 364 | 12 | 36 | 665 | 8 | 571 | 3.05e-101 | 325 |
| Msa0234080 | MtrunA17_Chr3g0082121 | 31.693 | 691 | 384 | 17 | 41 | 727 | 49 | 655 | 1.43e-100 | 326 |
| Msa0234080 | MtrunA17_Chr1g0202341 | 29.606 | 635 | 366 | 17 | 34 | 662 | 50 | 609 | 6.25e-80 | 271 |
| Msa0234080 | MtrunA17_Chr8g0363841 | 28.776 | 629 | 375 | 13 | 40 | 665 | 22 | 580 | 5.12e-75 | 257 |
| Msa0234080 | MtrunA17_Chr1g0203721 | 26.026 | 780 | 452 | 20 | 1 | 739 | 16 | 711 | 5.73e-73 | 256 |
| Msa0234080 | MtrunA17_Chr2g0296781 | 27.688 | 679 | 405 | 20 | 39 | 708 | 1 | 602 | 1.71e-68 | 240 |
| Msa0234080 | MtrunA17_Chr5g0448761 | 25.318 | 707 | 449 | 14 | 31 | 728 | 56 | 692 | 2.00e-68 | 241 |
| Msa0234080 | MtrunA17_Chr6g0458391 | 26.984 | 630 | 357 | 15 | 41 | 662 | 231 | 765 | 1.99e-65 | 233 |
| Msa0234080 | MtrunA17_Chr6g0477261 | 29.412 | 527 | 314 | 14 | 180 | 699 | 7 | 482 | 5.96e-65 | 229 |
| Msa0234080 | MtrunA17_Chr1g0164591 | 35.312 | 320 | 192 | 4 | 131 | 448 | 1 | 307 | 9.32e-63 | 214 |
| Msa0234080 | MtrunA17_Chr2g0287651 | 25.755 | 629 | 387 | 13 | 39 | 662 | 79 | 632 | 1.05e-60 | 221 |
| Msa0234080 | MtrunA17_Chr5g0441581 | 24.967 | 757 | 460 | 21 | 32 | 773 | 26 | 689 | 3.46e-59 | 214 |
| Msa0234080 | MtrunA17_Chr5g0440451 | 24.294 | 708 | 429 | 16 | 34 | 721 | 42 | 662 | 1.06e-55 | 207 |
| Msa0234080 | MtrunA17_Chr1g0172971 | 82.051 | 117 | 20 | 1 | 1 | 116 | 1 | 117 | 4.01e-54 | 196 |
| Msa0234080 | MtrunA17_Chr1g0207551 | 24.821 | 697 | 430 | 17 | 31 | 718 | 30 | 641 | 4.09e-54 | 201 |
| Msa0234080 | MtrunA17_Chr7g0258861 | 35.948 | 306 | 172 | 6 | 36 | 336 | 8 | 294 | 4.69e-54 | 189 |
| Msa0234080 | MtrunA17_Chr2g0329031 | 25.776 | 644 | 382 | 18 | 23 | 658 | 2 | 557 | 1.65e-53 | 198 |
| Msa0234080 | MtrunA17_Chr1g0198761 | 27.147 | 652 | 379 | 19 | 26 | 660 | 38 | 610 | 4.72e-53 | 197 |
| Msa0234080 | MtrunA17_Chr1g0196541 | 24.880 | 627 | 397 | 16 | 39 | 662 | 1 | 556 | 2.73e-52 | 194 |
| Msa0234080 | MtrunA17_Chr3g0118611 | 27.634 | 503 | 304 | 10 | 221 | 719 | 111 | 557 | 3.04e-52 | 195 |
| Msa0234080 | MtrunA17_Chr3g0080351 | 23.724 | 725 | 449 | 15 | 34 | 752 | 75 | 701 | 1.13e-48 | 185 |
| Msa0234080 | MtrunA17_Chr2g0287061 | 24.066 | 669 | 377 | 19 | 41 | 694 | 189 | 741 | 5.12e-48 | 182 |
| Msa0234080 | MtrunA17_Chr2g0290391 | 26.012 | 642 | 372 | 19 | 38 | 660 | 54 | 611 | 2.58e-47 | 179 |
| Msa0234080 | MtrunA17_Chr1g0203051 | 22.373 | 590 | 389 | 8 | 50 | 637 | 94 | 616 | 8.43e-47 | 177 |
| Msa0234080 | MtrunA17_Chr2g0276841 | 25.984 | 635 | 374 | 21 | 49 | 669 | 84 | 636 | 3.91e-45 | 173 |
| Msa0234080 | MtrunA17_Chr5g0448511 | 25.664 | 452 | 282 | 10 | 216 | 665 | 1 | 400 | 4.04e-44 | 167 |
| Msa0234080 | MtrunA17_Chr5g0431001 | 28.160 | 451 | 279 | 12 | 40 | 473 | 66 | 488 | 2.44e-42 | 161 |
| Msa0234080 | MtrunA17_Chr2g0291591 | 25.956 | 497 | 316 | 13 | 16 | 499 | 44 | 501 | 6.93e-42 | 161 |
| Msa0234080 | MtrunA17_Chr2g0291581 | 23.923 | 627 | 396 | 14 | 38 | 662 | 74 | 621 | 6.71e-41 | 160 |
| Msa0234080 | MtrunA17_Chr6g0475591 | 91.781 | 73 | 6 | 0 | 188 | 260 | 1 | 73 | 1.35e-40 | 143 |
| Msa0234080 | MtrunA17_Chr2g0294841 | 26.640 | 503 | 316 | 15 | 3 | 482 | 7 | 479 | 1.73e-35 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0234080 | AT4G38180.1 | 27.925 | 641 | 382 | 14 | 32 | 665 | 70 | 637 | 1.55e-70 | 248 |
| Msa0234080 | AT4G15090.1 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.07e-59 | 217 |
| Msa0234080 | AT4G15090.5 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.07e-59 | 217 |
| Msa0234080 | AT4G15090.3 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.07e-59 | 217 |
| Msa0234080 | AT4G15090.2 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.07e-59 | 217 |
| Msa0234080 | AT4G15090.4 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.07e-59 | 217 |
| Msa0234080 | AT2G27110.2 | 25.070 | 714 | 423 | 19 | 10 | 719 | 29 | 634 | 1.09e-53 | 200 |
| Msa0234080 | AT2G27110.1 | 25.070 | 714 | 423 | 19 | 10 | 719 | 29 | 634 | 1.09e-53 | 200 |
| Msa0234080 | AT2G27110.3 | 27.308 | 509 | 313 | 11 | 213 | 719 | 36 | 489 | 4.79e-53 | 197 |
| Msa0234080 | AT3G06250.2 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 5.24e-52 | 194 |
| Msa0234080 | AT3G06250.1 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 5.24e-52 | 194 |
| Msa0234080 | AT3G06250.3 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 5.24e-52 | 194 |
| Msa0234080 | AT1G76320.3 | 24.815 | 677 | 413 | 19 | 50 | 720 | 12 | 598 | 4.74e-50 | 187 |
| Msa0234080 | AT1G76320.2 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 1.19e-49 | 187 |
| Msa0234080 | AT1G76320.1 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 1.52e-49 | 187 |
| Msa0234080 | AT1G76320.4 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 1.52e-49 | 187 |
| Msa0234080 | AT3G22170.2 | 22.466 | 730 | 449 | 17 | 34 | 753 | 69 | 691 | 1.37e-47 | 182 |
| Msa0234080 | AT3G22170.1 | 22.466 | 730 | 449 | 17 | 34 | 753 | 69 | 691 | 1.37e-47 | 182 |
| Msa0234080 | AT5G18960.2 | 24.730 | 647 | 359 | 18 | 24 | 661 | 200 | 727 | 2.75e-46 | 178 |
| Msa0234080 | AT5G18960.1 | 24.730 | 647 | 359 | 18 | 24 | 661 | 200 | 727 | 2.75e-46 | 178 |
| Msa0234080 | AT4G38170.1 | 24.532 | 481 | 295 | 13 | 235 | 703 | 24 | 448 | 8.24e-44 | 167 |
| Msa0234080 | AT1G10240.2 | 24.719 | 623 | 377 | 19 | 49 | 659 | 62 | 604 | 8.82e-42 | 163 |
| Msa0234080 | AT1G10240.1 | 24.719 | 623 | 377 | 19 | 49 | 659 | 62 | 604 | 8.82e-42 | 163 |
| Msa0234080 | AT5G28530.1 | 24.100 | 639 | 388 | 17 | 40 | 660 | 60 | 619 | 1.31e-41 | 162 |
| Msa0234080 | AT5G28530.3 | 23.944 | 639 | 385 | 18 | 40 | 660 | 60 | 615 | 7.95e-41 | 160 |
| Msa0234080 | AT5G28530.2 | 23.944 | 639 | 385 | 18 | 40 | 660 | 60 | 615 | 7.95e-41 | 160 |
| Msa0234080 | AT2G32250.5 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.12e-39 | 157 |
| Msa0234080 | AT2G32250.2 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.78e-39 | 157 |
| Msa0234080 | AT2G32250.4 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.78e-39 | 157 |
| Msa0234080 | AT2G32250.6 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 2.54e-39 | 157 |
| Msa0234080 | AT2G32250.1 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 2.54e-39 | 157 |
| Msa0234080 | AT2G32250.3 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 2.54e-39 | 157 |
| Msa0234080 | AT2G32250.7 | 23.588 | 708 | 407 | 18 | 41 | 743 | 3 | 581 | 1.14e-38 | 154 |
| Msa0234080 | AT2G32250.8 | 23.605 | 699 | 400 | 18 | 50 | 743 | 12 | 581 | 1.18e-38 | 154 |
| Msa0234080 | AT1G80010.1 | 23.556 | 658 | 370 | 24 | 41 | 662 | 101 | 661 | 3.74e-36 | 146 |
| Msa0234080 | AT1G52520.1 | 22.080 | 625 | 407 | 16 | 41 | 662 | 91 | 638 | 2.37e-33 | 137 |
| Msa0234080 | AT4G19990.1 | 28.731 | 268 | 184 | 4 | 219 | 483 | 106 | 369 | 2.35e-27 | 119 |
| Msa0234080 | AT4G19990.1 | 35.338 | 133 | 72 | 3 | 591 | 721 | 438 | 558 | 2.15e-12 | 71.2 |
| Msa0234080 | AT4G19990.7 | 28.731 | 268 | 184 | 4 | 219 | 483 | 177 | 440 | 2.57e-27 | 119 |
| Msa0234080 | AT4G19990.7 | 35.338 | 133 | 72 | 3 | 591 | 721 | 509 | 629 | 2.49e-12 | 71.2 |
| Msa0234080 | AT4G19990.5 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.63e-27 | 119 |
| Msa0234080 | AT4G19990.5 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.44e-12 | 71.2 |
| Msa0234080 | AT4G19990.3 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.17e-27 | 119 |
| Msa0234080 | AT4G19990.3 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.49e-12 | 71.2 |
| Msa0234080 | AT4G19990.4 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.17e-27 | 119 |
| Msa0234080 | AT4G19990.4 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.49e-12 | 71.2 |
| Msa0234080 | AT4G19990.6 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.34e-27 | 119 |
| Msa0234080 | AT4G19990.6 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.21e-12 | 71.2 |
| Msa0234080 | AT4G19990.2 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.34e-27 | 119 |
| Msa0234080 | AT4G19990.2 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.21e-12 | 71.2 |
| Msa0234080 | AT5G28530.4 | 21.781 | 629 | 352 | 20 | 40 | 660 | 60 | 556 | 1.39e-22 | 103 |
| Msa0234080 | AT5G28530.5 | 21.622 | 629 | 349 | 21 | 40 | 660 | 60 | 552 | 9.74e-22 | 100 |
Find 124 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 2_2:-6566314 | Msa0234080:CDS |
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 2_2:-6566623 | Msa0234080:CDS |
| AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 2_2:+6565488 | None:intergenic |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 2_2:-6566356 | Msa0234080:CDS |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 2_2:-6567407 | Msa0234080:CDS |
| TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 2_2:-6566904 | Msa0234080:intron |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 2_2:-6566871 | Msa0234080:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 2_2:+6566777 | None:intergenic |
| TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 2_2:+6565494 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 2_2:-6566582 | Msa0234080:CDS |
| TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 2_2:-6565642 | Msa0234080:CDS |
| ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 2_2:+6566759 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 2_2:+6567357 | None:intergenic |
| TTGGTTTGAATATTATCTTC+TGG | 0.345646 | 2_2:-6565245 | Msa0234080:three_prime_UTR |
| TTTGCTTCTTCCGAGCTATA+AGG | 0.345757 | 2_2:+6565426 | None:intergenic |
| GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 2_2:-6566059 | Msa0234080:CDS |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 2_2:-6566482 | Msa0234080:CDS |
| CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 2_2:-6565650 | Msa0234080:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 2_2:-6567350 | Msa0234080:intron |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 2_2:-6567358 | Msa0234080:CDS |
| TTTCAATTTATCATATCTAA+TGG | 0.390380 | 2_2:-6568270 | None:intergenic |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 2_2:-6566483 | Msa0234080:CDS |
| GTCTTTAGTGCCAACATTCA+TGG | 0.395146 | 2_2:+6565766 | None:intergenic |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 2_2:+6567887 | None:intergenic |
| AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 2_2:-6565502 | Msa0234080:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 2_2:+6565512 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 2_2:-6566182 | Msa0234080:CDS |
| GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 2_2:-6565617 | Msa0234080:CDS |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 2_2:-6568116 | Msa0234080:CDS |
| CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 2_2:-6565934 | Msa0234080:CDS |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | 2_2:+6566011 | None:intergenic |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 2_2:-6568045 | Msa0234080:CDS |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | 2_2:+6566010 | None:intergenic |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 2_2:-6567710 | Msa0234080:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 2_2:-6567828 | Msa0234080:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 2_2:+6566766 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 2_2:-6567845 | Msa0234080:CDS |
| CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 2_2:+6565833 | None:intergenic |
| CGTTATGTTTGTAACAAAGA+AGG | 0.449439 | 2_2:-6567962 | Msa0234080:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 2_2:-6567680 | Msa0234080:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 2_2:-6568191 | Msa0234080:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 2_2:-6566692 | Msa0234080:CDS |
| GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 2_2:-6566528 | Msa0234080:CDS |
| ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 2_2:-6565933 | Msa0234080:CDS |
| AATTCTTGATTGTTATGCAT+TGG | 0.467731 | 2_2:-6565264 | Msa0234080:three_prime_UTR |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 2_2:-6567996 | Msa0234080:CDS |
| GGGTTGTCACAGTCGACATT+GGG | 0.480993 | 2_2:-6565976 | Msa0234080:CDS |
| GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 2_2:-6567635 | Msa0234080:CDS |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 2_2:+6566180 | None:intergenic |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 2_2:+6567851 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 2_2:-6568058 | Msa0234080:CDS |
| CTGTCTGTGAACCATCTGTT+GGG | 0.487793 | 2_2:-6565541 | Msa0234080:CDS |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 2_2:-6567567 | Msa0234080:CDS |
| CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 2_2:+6567740 | None:intergenic |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 2_2:-6568002 | Msa0234080:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 2_2:-6566166 | Msa0234080:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 2_2:+6566891 | None:intergenic |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 2_2:-6566581 | Msa0234080:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 2_2:-6567554 | Msa0234080:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 2_2:-6566342 | Msa0234080:CDS |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 2_2:+6566262 | None:intergenic |
| GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 2_2:-6567648 | Msa0234080:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 2_2:+6567462 | None:intergenic |
| GCTGTCTGTGAACCATCTGT+TGG | 0.504047 | 2_2:-6565542 | Msa0234080:CDS |
| AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 2_2:+6567752 | None:intergenic |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 2_2:-6566495 | Msa0234080:CDS |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | 2_2:-6565997 | Msa0234080:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 2_2:+6567596 | None:intergenic |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 2_2:-6566323 | Msa0234080:CDS |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 2_2:-6566477 | Msa0234080:CDS |
| TGTCTATAAGATATATAAGT+GGG | 0.514682 | 2_2:-6567792 | Msa0234080:CDS |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 2_2:+6566017 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 2_2:+6566374 | None:intergenic |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 2_2:-6567951 | Msa0234080:CDS |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | 2_2:-6565996 | Msa0234080:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 2_2:+6566185 | None:intergenic |
| GACAGAAATTCCTTATAGCT+CGG | 0.533906 | 2_2:-6565436 | Msa0234080:CDS |
| AGGGTTGTCACAGTCGACAT+TGG | 0.538587 | 2_2:-6565977 | Msa0234080:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 2_2:+6566379 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 2_2:-6566165 | Msa0234080:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 2_2:-6567950 | Msa0234080:CDS |
| CATTTAGTGATAAAGAATCA+TGG | 0.546005 | 2_2:-6568126 | Msa0234080:CDS |
| ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 2_2:+6566746 | None:intergenic |
| CTGAAATCCACCATGAATGT+TGG | 0.557140 | 2_2:-6565776 | Msa0234080:CDS |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 2_2:-6567500 | Msa0234080:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 2_2:-6568167 | Msa0234080:CDS |
| GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 2_2:-6567632 | Msa0234080:CDS |
| TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 2_2:-6565690 | Msa0234080:CDS |
| ATGTCTATAAGATATATAAG+TGG | 0.572287 | 2_2:-6567793 | Msa0234080:CDS |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 2_2:+6566261 | None:intergenic |
| TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 2_2:+6565530 | None:intergenic |
| GAAGCAAAAGAAAGATGATG+AGG | 0.585686 | 2_2:-6565411 | Msa0234080:CDS |
| TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 2_2:+6566240 | None:intergenic |
| ATATTAACTTCATCTGAGAG+TGG | 0.588105 | 2_2:-6568202 | Msa0234080:CDS |
| TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 2_2:-6567641 | Msa0234080:CDS |
| TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 2_2:-6565649 | Msa0234080:CDS |
| ACCATATACACAGACCAGGC+TGG | 0.590176 | 2_2:-6566760 | Msa0234080:CDS |
| ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 2_2:-6565654 | Msa0234080:CDS |
| GAGGCTTTAACAAATTAAGC+GGG | 0.594536 | 2_2:-6565392 | Msa0234080:exon |
| TTGAAGAAAACCTTTCCCCA+AGG | 0.594796 | 2_2:-6566027 | Msa0234080:CDS |
| TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 2_2:+6565574 | None:intergenic |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 2_2:-6567561 | Msa0234080:CDS |
| AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 2_2:-6567647 | Msa0234080:CDS |
| AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 2_2:-6567558 | Msa0234080:CDS |
| ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 2_2:-6565687 | Msa0234080:CDS |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 2_2:-6566264 | Msa0234080:CDS |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 2_2:-6566179 | Msa0234080:CDS |
| TTGATATCGTTGCGCTTCAG+TGG | 0.611060 | 2_2:+6565742 | None:intergenic |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 2_2:+6567902 | None:intergenic |
| AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 2_2:+6566526 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 2_2:-6567627 | Msa0234080:CDS |
| TGAGGCTTTAACAAATTAAG+CGG | 0.628414 | 2_2:-6565393 | Msa0234080:exon |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 2_2:+6566012 | None:intergenic |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 2_2:-6566691 | Msa0234080:CDS |
| TTTAGTGCCAACATTCATGG+TGG | 0.641441 | 2_2:+6565769 | None:intergenic |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 2_2:-6566341 | Msa0234080:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 2_2:+6565791 | None:intergenic |
| TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 2_2:+6566220 | None:intergenic |
| GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 2_2:-6565665 | Msa0234080:CDS |
| CATGTCGACATAAGAAACCC+CGG | 0.663279 | 2_2:+6565915 | None:intergenic |
| TCAAACCATATACACAGACC+AGG | 0.671057 | 2_2:-6566764 | Msa0234080:CDS |
| TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 2_2:-6565932 | Msa0234080:CDS |
| ATGTTGATAATGATAATGAG+AGG | 0.683310 | 2_2:-6566081 | Msa0234080:CDS |
| TGTTGATAATGATAATGAGA+GGG | 0.689129 | 2_2:-6566080 | Msa0234080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTTATGTTATAAGTT+AGG | - | chr2_2:6568144-6568163 | Msa0234080:CDS | 15.0% |
| !! | TTTAATTATGCATATAACAC+TGG | - | chr2_2:6565448-6565467 | Msa0234080:CDS | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | - | chr2_2:6565504-6565523 | Msa0234080:CDS | 20.0% |
| !! | ATGTCTATAAGATATATAAG+TGG | - | chr2_2:6565713-6565732 | Msa0234080:CDS | 20.0% |
| !! | TGTCTATAAGATATATAAGT+GGG | - | chr2_2:6565714-6565733 | Msa0234080:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | - | chr2_2:6566303-6566322 | Msa0234080:CDS | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+GGG | - | chr2_2:6566331-6566350 | Msa0234080:CDS | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | - | chr2_2:6566953-6566972 | Msa0234080:intron | 20.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | - | chr2_2:6565339-6565358 | Msa0234080:three_prime_UTR | 25.0% |
| ! | CATTTAGTGATAAAGAATCA+TGG | - | chr2_2:6565380-6565399 | Msa0234080:exon | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | + | chr2_2:6565500-6565519 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | - | chr2_2:6565510-6565529 | Msa0234080:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr2_2:6565826-6565845 | Msa0234080:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr2_2:6566148-6566167 | Msa0234080:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | chr2_2:6566174-6566193 | None:intergenic | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | - | chr2_2:6566221-6566240 | Msa0234080:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | chr2_2:6566323-6566342 | Msa0234080:CDS | 25.0% |
| !!! | GAATTTAATGTTCTGGTTTA+TGG | - | chr2_2:6566330-6566349 | Msa0234080:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | chr2_2:6566579-6566598 | Msa0234080:CDS | 25.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | + | chr2_2:6566791-6566810 | None:intergenic | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | - | chr2_2:6566883-6566902 | Msa0234080:CDS | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | - | chr2_2:6566957-6566976 | Msa0234080:intron | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr2_2:6567150-6567169 | Msa0234080:intron | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | + | chr2_2:6567289-6567308 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr2_2:6567324-6567343 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr2_2:6567324-6567343 | Msa0234080:intron | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | - | chr2_2:6567425-6567444 | Msa0234080:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | - | chr2_2:6567426-6567445 | Msa0234080:CDS | 25.0% |
| ! | TGATGCTTTAACTAAAAAAG+CGG | - | chr2_2:6568175-6568194 | Msa0234080:CDS | 25.0% |
| ! | AATTCTTGATTGTTATGCAT+TGG | - | chr2_2:6568242-6568261 | Msa0234080:five_prime_UTR | 25.0% |
| ATATTAACTTCATCTGAGAG+TGG | - | chr2_2:6565304-6565323 | Msa0234080:three_prime_UTR | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | - | chr2_2:6565390-6565409 | Msa0234080:exon | 30.0% | |
| CGTTATGTTTGTAACAAAGA+AGG | - | chr2_2:6565544-6565563 | Msa0234080:CDS | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr2_2:6565555-6565574 | Msa0234080:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr2_2:6565556-6565575 | Msa0234080:CDS | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | - | chr2_2:6565645-6565664 | Msa0234080:CDS | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | - | chr2_2:6565678-6565697 | Msa0234080:CDS | 30.0% |
| ! | AAATGCTCTGGTTTATGTAA+TGG | + | chr2_2:6565757-6565776 | None:intergenic | 30.0% |
| AGAACATCTTATGAAGTGAT+GGG | - | chr2_2:6565859-6565878 | Msa0234080:CDS | 30.0% | |
| ! | GAATCTTCCTTTTCGATTTT+CGG | - | chr2_2:6565903-6565922 | Msa0234080:CDS | 30.0% |
| TTTAAGTCCGAAAATCGAAA+AGG | + | chr2_2:6565913-6565932 | None:intergenic | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | + | chr2_2:6566027-6566046 | None:intergenic | 30.0% | |
| !!! | AAGACATAGCCAGTATTTTT+TGG | - | chr2_2:6566061-6566080 | Msa0234080:CDS | 30.0% |
| !!! | AGACATAGCCAGTATTTTTT+GGG | - | chr2_2:6566062-6566081 | Msa0234080:CDS | 30.0% |
| CAACAAGATTATGCTCTATT+TGG | - | chr2_2:6566099-6566118 | Msa0234080:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr2_2:6566152-6566171 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr2_2:6566156-6566175 | Msa0234080:CDS | 30.0% | |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | - | chr2_2:6566235-6566254 | Msa0234080:CDS | 30.0% |
| CTGGTATATGTGTGTTAATT+TGG | - | chr2_2:6566260-6566279 | Msa0234080:CDS | 30.0% | |
| AAACACATATGATCTTTCCA+TGG | + | chr2_2:6566394-6566413 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | - | chr2_2:6566538-6566557 | Msa0234080:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | + | chr2_2:6566618-6566637 | None:intergenic | 30.0% | |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | + | chr2_2:6566732-6566751 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | - | chr2_2:6566782-6566801 | Msa0234080:CDS | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | - | chr2_2:6566794-6566813 | Msa0234080:CDS | 30.0% |
| GAGAATGCAAAGAAAAATCT+CGG | - | chr2_2:6566839-6566858 | Msa0234080:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | - | chr2_2:6566924-6566943 | Msa0234080:intron | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | - | chr2_2:6566925-6566944 | Msa0234080:intron | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr2_2:6567135-6567154 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | + | chr2_2:6567269-6567288 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr2_2:6567329-6567348 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr2_2:6567327-6567346 | Msa0234080:intron | 30.0% | |
| ! | CAAAGTTTTCACAATTGAGA+AGG | - | chr2_2:6567384-6567403 | Msa0234080:CDS | 30.0% |
| ATTATGATCTTCAAACCTTG+GGG | + | chr2_2:6567497-6567516 | None:intergenic | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | + | chr2_2:6567498-6567517 | None:intergenic | 30.0% | |
| !! | ATCATAATCGACTTGATGAA+AGG | - | chr2_2:6567509-6567528 | Msa0234080:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | - | chr2_2:6567510-6567529 | Msa0234080:CDS | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | - | chr2_2:6567606-6567625 | Msa0234080:CDS | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | - | chr2_2:6567609-6567628 | Msa0234080:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | - | chr2_2:6567674-6567693 | Msa0234080:CDS | 30.0% |
| ! | GCATCTGAAATATTTCTCAA+CGG | - | chr2_2:6567841-6567860 | Msa0234080:CDS | 30.0% |
| !! | GAGGAGTTTCTTATTTCTAA+AGG | - | chr2_2:6567889-6567908 | Msa0234080:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr2_2:6567997-6568016 | None:intergenic | 30.0% |
| AAGAAAGACCAAATCCAATT+AGG | - | chr2_2:6568004-6568023 | Msa0234080:CDS | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | + | chr2_2:6568015-6568034 | None:intergenic | 30.0% | |
| ! | TGAGGCTTTAACAAATTAAG+CGG | - | chr2_2:6568113-6568132 | Msa0234080:CDS | 30.0% |
| !!! | GTGTTTGTTGCTGTTTTCAA+TGG | - | chr2_2:6565276-6565295 | Msa0234080:three_prime_UTR | 35.0% |
| ATAACACTGGATTCTCTGTT+AGG | - | chr2_2:6565461-6565480 | Msa0234080:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | - | chr2_2:6565581-6565600 | Msa0234080:CDS | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | + | chr2_2:6565622-6565641 | None:intergenic | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | - | chr2_2:6565639-6565658 | Msa0234080:CDS | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | - | chr2_2:6565644-6565663 | Msa0234080:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr2_2:6565796-6565815 | Msa0234080:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | - | chr2_2:6565858-6565877 | Msa0234080:CDS | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | - | chr2_2:6565939-6565958 | Msa0234080:CDS | 35.0% | |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | - | chr2_2:6566241-6566260 | Msa0234080:CDS | 35.0% |
| CATAAATTCCAAGGCAAGAT+AGG | + | chr2_2:6566361-6566380 | None:intergenic | 35.0% | |
| TGTACAGAGCATAAATTCCA+AGG | + | chr2_2:6566370-6566389 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | - | chr2_2:6566635-6566654 | Msa0234080:CDS | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | - | chr2_2:6566678-6566697 | Msa0234080:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | - | chr2_2:6566807-6566826 | Msa0234080:CDS | 35.0% |
| ! | TTTTAATGGAAGGCCTACTT+CGG | - | chr2_2:6566967-6566986 | Msa0234080:intron | 35.0% |
| CTCATTCAAATCGTATGCAT+TGG | - | chr2_2:6567011-6567030 | Msa0234080:intron | 35.0% | |
| !! | TATGCATTGGTCTTCAGTTT+GGG | - | chr2_2:6567024-6567043 | Msa0234080:intron | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr2_2:6567094-6567113 | Msa0234080:intron | 35.0% |
| ACATTATGGTTCAGAGAATG+AGG | - | chr2_2:6567164-6567183 | Msa0234080:intron | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr2_2:6567165-6567184 | Msa0234080:intron | 35.0% | |
| ! | GGTTTCGAATGTTGATGTTT+TGG | - | chr2_2:6567447-6567466 | Msa0234080:CDS | 35.0% |
| CGATTATGATCTTCAAACCT+TGG | + | chr2_2:6567499-6567518 | None:intergenic | 35.0% | |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | - | chr2_2:6567616-6567635 | Msa0234080:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | + | chr2_2:6567676-6567695 | None:intergenic | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | - | chr2_2:6567677-6567696 | Msa0234080:CDS | 35.0% |
| !! | ACTGCTTTTGAAGACTTAGA+AGG | + | chr2_2:6567943-6567962 | None:intergenic | 35.0% |
| GACAGAAATTCCTTATAGCT+CGG | - | chr2_2:6568070-6568089 | Msa0234080:CDS | 35.0% | |
| GAAGCAAAAGAAAGATGATG+AGG | - | chr2_2:6568095-6568114 | Msa0234080:CDS | 35.0% | |
| ! | GAGGCTTTAACAAATTAAGC+GGG | - | chr2_2:6568114-6568133 | Msa0234080:CDS | 35.0% |
| ATCTGAGAGTGGACAATTGA+CGG | - | chr2_2:6565315-6565334 | Msa0234080:three_prime_UTR | 40.0% | |
| !! | TCACATGTTGGCCTGTTTTT+AGG | + | chr2_2:6565595-6565614 | None:intergenic | 40.0% |
| !! | TCTTATGAAGTGATGGGTCA+AGG | - | chr2_2:6565865-6565884 | Msa0234080:CDS | 40.0% |
| TCCATCTGCCCAAAAAATAC+TGG | + | chr2_2:6566073-6566092 | None:intergenic | 40.0% | |
| ATTTATGCTCTGTACAGCCA+TGG | - | chr2_2:6566374-6566393 | Msa0234080:CDS | 40.0% | |
| TCCAGCTATGCAAAGATCAT+AGG | - | chr2_2:6566484-6566503 | Msa0234080:CDS | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | chr2_2:6566488-6566507 | None:intergenic | 40.0% | |
| TTCATTTCAGCTGCCTTTCT+TGG | - | chr2_2:6566602-6566621 | Msa0234080:CDS | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | + | chr2_2:6566743-6566762 | None:intergenic | 40.0% | |
| TCAAACCATATACACAGACC+AGG | - | chr2_2:6566742-6566761 | Msa0234080:CDS | 40.0% | |
| !! | GTATGCATTGGTCTTCAGTT+TGG | - | chr2_2:6567023-6567042 | Msa0234080:intron | 40.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | chr2_2:6567130-6567149 | None:intergenic | 40.0% | |
| ! | TCATGCTGAGTTGGACTTTA+AGG | - | chr2_2:6567192-6567211 | Msa0234080:intron | 40.0% |
| TATGAGGAGGACACAACAAA+AGG | - | chr2_2:6567340-6567359 | Msa0234080:intron | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | - | chr2_2:6567341-6567360 | Msa0234080:intron | 40.0% | |
| TTGAAGAAAACCTTTCCCCA+AGG | - | chr2_2:6567479-6567498 | Msa0234080:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | - | chr2_2:6567572-6567591 | Msa0234080:CDS | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | - | chr2_2:6567573-6567592 | Msa0234080:CDS | 40.0% | |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | - | chr2_2:6567619-6567638 | Msa0234080:CDS | 40.0% |
| GATTTCAGCTTATCGACAGA+CGG | + | chr2_2:6567718-6567737 | None:intergenic | 40.0% | |
| CTGAAATCCACCATGAATGT+TGG | - | chr2_2:6567730-6567749 | Msa0234080:CDS | 40.0% | |
| TTTAGTGCCAACATTCATGG+TGG | + | chr2_2:6567740-6567759 | None:intergenic | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | + | chr2_2:6567743-6567762 | None:intergenic | 40.0% | |
| ATTTCTCAACGGTGTTCTTG+AGG | - | chr2_2:6567852-6567871 | Msa0234080:CDS | 40.0% | |
| ! | TGAAGACTTAGAAGGCGTAA+CGG | + | chr2_2:6567935-6567954 | None:intergenic | 40.0% |
| AGTCGCTTCTTTGACCTAAT+TGG | + | chr2_2:6568021-6568040 | None:intergenic | 40.0% | |
| TTTGCTTCTTCCGAGCTATA+AGG | + | chr2_2:6568083-6568102 | None:intergenic | 40.0% | |
| AGAACTGGACTGTCACATGT+TGG | + | chr2_2:6565607-6565626 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | - | chr2_2:6565649-6565668 | Msa0234080:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | + | chr2_2:6565658-6565677 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr2_2:6565661-6565680 | Msa0234080:CDS | 45.0% |
| CTCAAGTAGCACAAATGCTC+TGG | + | chr2_2:6565769-6565788 | None:intergenic | 45.0% | |
| GACAACTCGTCAAAAGGAGA+TGG | - | chr2_2:6565945-6565964 | Msa0234080:CDS | 45.0% | |
| AACTCGTCAAAAGGAGATGG+TGG | - | chr2_2:6565948-6565967 | Msa0234080:CDS | 45.0% | |
| AATGAAGCTCTCTCGAAACC+AGG | - | chr2_2:6566006-6566025 | Msa0234080:CDS | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | + | chr2_2:6566047-6566066 | None:intergenic | 45.0% | |
| !!! | GCCAGTATTTTTTGGGCAGA+TGG | - | chr2_2:6566069-6566088 | Msa0234080:CDS | 45.0% |
| AGCCACTTAAAGTCCGAAGT+AGG | + | chr2_2:6566983-6567002 | None:intergenic | 45.0% | |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | - | chr2_2:6567029-6567048 | Msa0234080:intron | 45.0% |
| ! | GTGAGGTCACATTTTACAGC+TGG | - | chr2_2:6567046-6567065 | Msa0234080:intron | 45.0% |
| GAGGGATAATCATGCTGAGT+TGG | - | chr2_2:6567183-6567202 | Msa0234080:intron | 45.0% | |
| ATCCCAACAGTCAGCTTATG+CGG | - | chr2_2:6567242-6567261 | Msa0234080:intron | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | + | chr2_2:6567492-6567511 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | - | chr2_2:6567574-6567593 | Msa0234080:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | + | chr2_2:6567594-6567613 | None:intergenic | 45.0% | |
| TTGATATCGTTGCGCTTCAG+TGG | + | chr2_2:6567767-6567786 | None:intergenic | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | - | chr2_2:6567864-6567883 | Msa0234080:CDS | 45.0% | |
| CTGTCTGTGAACCATCTGTT+GGG | - | chr2_2:6567965-6567984 | Msa0234080:CDS | 45.0% | |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | - | chr2_2:6565871-6565890 | Msa0234080:CDS | 50.0% |
| TGGGTGATCCTATCTTGCCT+TGG | - | chr2_2:6566350-6566369 | Msa0234080:CDS | 50.0% | |
| ACCATATACACAGACCAGGC+TGG | - | chr2_2:6566746-6566765 | Msa0234080:CDS | 50.0% | |
| ACCAGCCTGGTCTGTGTATA+TGG | + | chr2_2:6566750-6566769 | None:intergenic | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | - | chr2_2:6566814-6566833 | Msa0234080:CDS | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | - | chr2_2:6566815-6566834 | Msa0234080:CDS | 50.0% | |
| GGCCTACTTCGGACTTTAAG+TGG | - | chr2_2:6566978-6566997 | Msa0234080:intron | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | + | chr2_2:6567247-6567266 | None:intergenic | 50.0% | |
| AGGGTTGTCACAGTCGACAT+TGG | - | chr2_2:6567529-6567548 | Msa0234080:CDS | 50.0% | |
| GGGTTGTCACAGTCGACATT+GGG | - | chr2_2:6567530-6567549 | Msa0234080:CDS | 50.0% | |
| TACACGTGTTTGCGCAGATG+CGG | - | chr2_2:6567816-6567835 | Msa0234080:CDS | 50.0% | |
| TCAACGGTGTTCTTGAGGCA+GGG | - | chr2_2:6567857-6567876 | Msa0234080:CDS | 50.0% | |
| GCTGTCTGTGAACCATCTGT+TGG | - | chr2_2:6567964-6567983 | Msa0234080:CDS | 50.0% | |
| ! | TTTGGTGCAGTCCCAACAGA+TGG | + | chr2_2:6567979-6567998 | None:intergenic | 50.0% |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | - | chr2_2:6565874-6565893 | Msa0234080:CDS | 55.0% |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | - | chr2_2:6565952-6565971 | Msa0234080:CDS | 55.0% |
| ACTTCAACAACGCACCAGCC+TGG | + | chr2_2:6566763-6566782 | None:intergenic | 55.0% | |
| GGACCGCATAAGCTGACTGT+TGG | + | chr2_2:6567248-6567267 | None:intergenic | 55.0% | |
| CTCAACGGTGTTCTTGAGGC+AGG | - | chr2_2:6567856-6567875 | Msa0234080:CDS | 55.0% | |
| TGAGGCAGGGAAAAAGGCAG+AGG | - | chr2_2:6567870-6567889 | Msa0234080:CDS | 55.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | - | chr2_2:6565879-6565898 | Msa0234080:CDS | 60.0% | |
| ACGTGTTTGCGCAGATGCGG+AGG | - | chr2_2:6567819-6567838 | Msa0234080:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 6565245 | 6568283 | 6565245 | ID=Msa0234080;Name=Msa0234080 |
| chr2_2 | mRNA | 6565245 | 6568283 | 6565245 | ID=Msa0234080-mRNA-1;Parent=Msa0234080;Name=Msa0234080-mRNA-1;_AED=0.00;_eAED=0.00;_QI=50|1|1|1|1|1|2|152|800 |
| chr2_2 | exon | 6565245 | 6566916 | 6565245 | ID=Msa0234080-mRNA-1:exon:2906;Parent=Msa0234080-mRNA-1 |
| chr2_2 | exon | 6567351 | 6568283 | 6567351 | ID=Msa0234080-mRNA-1:exon:2905;Parent=Msa0234080-mRNA-1 |
| chr2_2 | five_prime_UTR | 6568234 | 6568283 | 6568234 | ID=Msa0234080-mRNA-1:five_prime_utr;Parent=Msa0234080-mRNA-1 |
| chr2_2 | CDS | 6567351 | 6568233 | 6567351 | ID=Msa0234080-mRNA-1:cds;Parent=Msa0234080-mRNA-1 |
| chr2_2 | CDS | 6565397 | 6566916 | 6565397 | ID=Msa0234080-mRNA-1:cds;Parent=Msa0234080-mRNA-1 |
| chr2_2 | three_prime_UTR | 6565245 | 6565396 | 6565245 | ID=Msa0234080-mRNA-1:three_prime_utr;Parent=Msa0234080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
