Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0234510 | XP_003593656.1 | 94.822 | 309 | 14 | 2 | 1 | 308 | 1 | 308 | 0.0 | 609 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0234510 | sp|O49459|NAC73_ARATH | 63.636 | 231 | 73 | 3 | 1 | 222 | 1 | 229 | 6.19e-106 | 314 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0234510 | A2Q521 | 94.822 | 309 | 14 | 2 | 1 | 308 | 1 | 308 | 0.0 | 609 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0234510 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0234510 | MtrunA17_Chr2g0282871 | 94.822 | 309 | 14 | 2 | 1 | 308 | 1 | 308 | 0.0 | 609 |
| Msa0234510 | MtrunA17_Chr4g0046431 | 62.270 | 326 | 86 | 9 | 1 | 302 | 1 | 313 | 4.51e-137 | 390 |
| Msa0234510 | MtrunA17_Chr8g0367761 | 69.469 | 226 | 48 | 2 | 1 | 208 | 1 | 223 | 2.76e-114 | 330 |
| Msa0234510 | MtrunA17_Chr4g0040541 | 58.803 | 284 | 102 | 7 | 1 | 279 | 1 | 274 | 7.98e-109 | 317 |
| Msa0234510 | MtrunA17_Chr2g0324961 | 57.877 | 292 | 110 | 6 | 1 | 290 | 1 | 281 | 2.96e-106 | 311 |
| Msa0234510 | MtrunA17_Chr8g0389661 | 61.135 | 229 | 75 | 5 | 8 | 226 | 3 | 227 | 2.66e-88 | 272 |
| Msa0234510 | MtrunA17_Chr5g0422431 | 58.763 | 194 | 77 | 2 | 27 | 220 | 34 | 224 | 2.09e-73 | 232 |
| Msa0234510 | MtrunA17_Chr1g0198751 | 51.055 | 237 | 110 | 4 | 2 | 235 | 7 | 240 | 1.01e-72 | 231 |
| Msa0234510 | MtrunA17_Chr7g0227071 | 56.216 | 185 | 74 | 3 | 31 | 212 | 35 | 215 | 8.29e-67 | 217 |
| Msa0234510 | MtrunA17_Chr1g0198741 | 52.756 | 127 | 59 | 1 | 108 | 233 | 7 | 133 | 5.77e-35 | 128 |
| Msa0234510 | MtrunA17_Chr6g0484441 | 32.317 | 164 | 92 | 6 | 53 | 213 | 5 | 152 | 3.69e-15 | 74.7 |
| Msa0234510 | MtrunA17_Chr7g0217721 | 30.457 | 197 | 120 | 4 | 36 | 231 | 2 | 182 | 9.48e-15 | 73.9 |
| Msa0234510 | MtrunA17_Chr7g0217711 | 32.075 | 159 | 91 | 4 | 36 | 193 | 2 | 144 | 1.02e-14 | 71.2 |
| Msa0234510 | MtrunA17_Chr4g0060931 | 34.507 | 142 | 76 | 5 | 53 | 193 | 17 | 142 | 1.87e-13 | 70.1 |
| Msa0234510 | MtrunA17_Chr7g0253011 | 31.111 | 180 | 93 | 9 | 46 | 212 | 10 | 171 | 3.01e-13 | 69.7 |
| Msa0234510 | MtrunA17_Chr6g0461661 | 34.104 | 173 | 77 | 11 | 53 | 210 | 18 | 168 | 4.99e-13 | 68.9 |
| Msa0234510 | MtrunA17_Chr3g0091921 | 33.803 | 142 | 77 | 5 | 53 | 193 | 16 | 141 | 5.97e-13 | 68.2 |
| Msa0234510 | MtrunA17_Chr3g0139331 | 31.429 | 175 | 97 | 7 | 41 | 210 | 1 | 157 | 6.73e-13 | 68.6 |
| Msa0234510 | MtrunA17_Chr7g0214071 | 33.333 | 147 | 70 | 8 | 53 | 193 | 15 | 139 | 2.17e-12 | 65.9 |
| Msa0234510 | MtrunA17_Chr8g0345701 | 33.974 | 156 | 74 | 8 | 52 | 192 | 6 | 147 | 1.22e-11 | 62.4 |
| Msa0234510 | MtrunA17_Chr8g0385991 | 32.000 | 150 | 79 | 8 | 48 | 193 | 9 | 139 | 1.79e-11 | 62.8 |
| Msa0234510 | MtrunA17_Chr2g0316971 | 32.738 | 168 | 86 | 9 | 53 | 210 | 23 | 173 | 1.81e-11 | 64.3 |
| Msa0234510 | MtrunA17_Chr1g0183741 | 27.962 | 211 | 119 | 9 | 52 | 251 | 9 | 197 | 1.93e-11 | 63.5 |
| Msa0234510 | MtrunA17_Chr5g0398971 | 27.907 | 172 | 100 | 7 | 47 | 210 | 1 | 156 | 8.17e-11 | 62.0 |
| Msa0234510 | MtrunA17_Chr7g0261411 | 29.448 | 163 | 96 | 6 | 52 | 211 | 9 | 155 | 8.22e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0234510 | AT4G28500.1 | 63.636 | 231 | 73 | 3 | 1 | 222 | 1 | 229 | 6.29e-107 | 314 |
| Msa0234510 | AT1G28470.1 | 57.895 | 285 | 80 | 7 | 1 | 249 | 1 | 281 | 2.67e-106 | 312 |
| Msa0234510 | AT4G29230.3 | 61.883 | 223 | 70 | 3 | 6 | 217 | 2 | 220 | 2.81e-91 | 278 |
| Msa0234510 | AT4G29230.1 | 61.883 | 223 | 70 | 3 | 6 | 217 | 2 | 220 | 1.03e-90 | 279 |
| Msa0234510 | AT4G29230.2 | 60.987 | 223 | 71 | 3 | 6 | 217 | 2 | 219 | 1.53e-89 | 276 |
| Msa0234510 | AT5G56620.2 | 58.636 | 220 | 76 | 5 | 9 | 217 | 3 | 218 | 1.10e-81 | 253 |
| Msa0234510 | AT5G56620.1 | 58.636 | 220 | 76 | 5 | 9 | 217 | 3 | 218 | 1.22e-81 | 252 |
| Msa0234510 | AT5G56620.3 | 62.944 | 197 | 59 | 4 | 32 | 217 | 25 | 218 | 1.23e-81 | 253 |
| Msa0234510 | AT1G25580.1 | 56.545 | 191 | 74 | 4 | 27 | 217 | 34 | 215 | 3.52e-69 | 222 |
| Msa0234510 | AT5G14490.2 | 50.500 | 200 | 94 | 4 | 30 | 228 | 34 | 229 | 1.79e-56 | 184 |
| Msa0234510 | AT5G14490.4 | 50.500 | 200 | 94 | 4 | 30 | 228 | 34 | 229 | 4.51e-56 | 185 |
| Msa0234510 | AT5G14490.1 | 50.500 | 200 | 94 | 4 | 30 | 228 | 37 | 232 | 4.77e-56 | 185 |
| Msa0234510 | AT5G14490.3 | 50.500 | 200 | 94 | 4 | 30 | 228 | 37 | 232 | 6.90e-56 | 185 |
| Msa0234510 | AT3G01600.1 | 49.462 | 186 | 90 | 3 | 30 | 214 | 34 | 216 | 1.42e-50 | 171 |
| Msa0234510 | AT3G04060.1 | 32.609 | 184 | 98 | 7 | 41 | 215 | 8 | 174 | 4.76e-19 | 86.7 |
| Msa0234510 | AT5G18270.2 | 33.514 | 185 | 94 | 10 | 41 | 215 | 10 | 175 | 2.91e-16 | 78.6 |
| Msa0234510 | AT5G18270.1 | 33.514 | 185 | 94 | 10 | 41 | 215 | 10 | 175 | 4.85e-16 | 77.8 |
| Msa0234510 | AT3G18400.1 | 33.803 | 142 | 77 | 5 | 53 | 193 | 5 | 130 | 8.73e-15 | 73.9 |
| Msa0234510 | AT1G33060.2 | 30.645 | 186 | 94 | 9 | 40 | 212 | 11 | 174 | 9.60e-14 | 72.0 |
| Msa0234510 | AT1G33060.1 | 30.645 | 186 | 94 | 9 | 40 | 212 | 11 | 174 | 1.04e-13 | 72.0 |
| Msa0234510 | AT4G35580.1 | 31.551 | 187 | 93 | 10 | 46 | 219 | 2 | 166 | 4.68e-13 | 69.7 |
| Msa0234510 | AT4G35580.2 | 31.551 | 187 | 93 | 10 | 46 | 219 | 2 | 166 | 6.05e-13 | 69.7 |
| Msa0234510 | AT4G35580.3 | 31.551 | 187 | 93 | 10 | 46 | 219 | 2 | 166 | 6.15e-13 | 69.7 |
| Msa0234510 | AT2G24430.2 | 29.586 | 169 | 97 | 6 | 52 | 214 | 15 | 167 | 2.75e-12 | 66.6 |
| Msa0234510 | AT2G24430.1 | 29.586 | 169 | 97 | 6 | 52 | 214 | 15 | 167 | 2.75e-12 | 66.6 |
| Msa0234510 | AT1G01720.1 | 30.464 | 151 | 83 | 6 | 47 | 194 | 1 | 132 | 2.07e-11 | 63.9 |
| Msa0234510 | AT1G76420.1 | 31.492 | 181 | 98 | 10 | 52 | 224 | 21 | 183 | 2.34e-11 | 64.3 |
| Msa0234510 | AT3G29035.1 | 32.867 | 143 | 77 | 5 | 53 | 193 | 24 | 149 | 2.86e-11 | 63.9 |
| Msa0234510 | AT2G33480.2 | 29.412 | 187 | 98 | 10 | 41 | 221 | 7 | 165 | 4.99e-11 | 62.4 |
| Msa0234510 | AT2G33480.1 | 29.101 | 189 | 98 | 10 | 41 | 221 | 7 | 167 | 6.62e-11 | 62.4 |
Find 75 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACTAACATTTACATTTA+TGG | 0.058753 | 2_2:+7281121 | Msa0234510:three_prime_UTR |
| ATTCGAGATAATTGGAATTT+AGG | 0.164146 | 2_2:+7281175 | Msa0234510:three_prime_UTR |
| TGAATCTCTTACATTGTTAA+TGG | 0.179782 | 2_2:-7280814 | None:intergenic |
| GTTGGCTTATTCGAGATAAT+TGG | 0.209715 | 2_2:+7281167 | Msa0234510:three_prime_UTR |
| TCACTAACATTTACATTTAT+GGG | 0.236425 | 2_2:+7281122 | Msa0234510:three_prime_UTR |
| GAAAACCAGAGAAGACTAAT+TGG | 0.273159 | 2_2:+7280688 | Msa0234510:CDS |
| AGCAAATAGCAAACACAGTT+TGG | 0.285031 | 2_2:+7277939 | None:intergenic |
| GAAACAAGATGGCACAAAAC+TGG | 0.293534 | 2_2:+7280582 | Msa0234510:CDS |
| TCTAGTACTTCTACATCATT+TGG | 0.314489 | 2_2:-7278599 | None:intergenic |
| TGACTCTGATTGAAGTTTAG+AGG | 0.325996 | 2_2:+7281235 | Msa0234510:three_prime_UTR |
| CCAACGCTTCAAGGAGATAA+TGG | 0.355602 | 2_2:+7278686 | Msa0234510:CDS |
| GAAGGGATTTAAGAAGATAT+TGG | 0.357820 | 2_2:+7280638 | Msa0234510:CDS |
| GTAACATTGGAAGAGCTTCT+TGG | 0.363219 | 2_2:+7281076 | Msa0234510:exon |
| CTTAATCTCTCCTACAATAC+TGG | 0.389172 | 2_2:-7278130 | None:intergenic |
| TTATTAGGGACCAGTATTGT+AGG | 0.389395 | 2_2:+7278120 | Msa0234510:intron |
| TGTAGAAGTACTAGAGCATT+TGG | 0.390413 | 2_2:+7278607 | Msa0234510:CDS |
| ATCACCCAATTAGTCTTCTC+TGG | 0.399788 | 2_2:-7280693 | None:intergenic |
| TCACTTTGAACAGCCATGTT+TGG | 0.400365 | 2_2:-7280993 | None:intergenic |
| AACTATTATTCGCTTATCAA+TGG | 0.414728 | 2_2:+7281019 | Msa0234510:CDS |
| GGGTGGAGTTAATGAATTGC+CGG | 0.417191 | 2_2:+7278550 | Msa0234510:intron |
| CATTTATGGGATTGTAATGA+AGG | 0.418319 | 2_2:+7281135 | Msa0234510:three_prime_UTR |
| ATTTAGGATATACTATATGT+TGG | 0.424177 | 2_2:+7281191 | Msa0234510:three_prime_UTR |
| CACATTAAGAGCTACATTGT+TGG | 0.427511 | 2_2:-7280889 | None:intergenic |
| TGTTCCTGTTGTGTATGCTT+TGG | 0.432715 | 2_2:-7280520 | None:intergenic |
| GTAGGAGAGATTAAGAACTA+TGG | 0.446677 | 2_2:+7278138 | Msa0234510:exon |
| ATATGCATGTTGGTCATAGC+AGG | 0.451891 | 2_2:+7280946 | Msa0234510:CDS |
| GCAAATAGCAAACACAGTTT+GGG | 0.457388 | 2_2:+7277940 | None:intergenic |
| CTAGTACTTCTACATCATTT+GGG | 0.458512 | 2_2:-7278598 | None:intergenic |
| GAGTTCATACCAACGCTTCA+AGG | 0.459148 | 2_2:+7278677 | Msa0234510:CDS |
| CCATTATCTCCTTGAAGCGT+TGG | 0.461132 | 2_2:-7278686 | None:intergenic |
| GGGTCAAATTTCACTCCAGC+TGG | 0.465906 | 2_2:-7278578 | None:intergenic |
| CTTCTTCATTCATACCAAGA+TGG | 0.471328 | 2_2:-7280725 | None:intergenic |
| CCTGTTGTGTATGCTTTGGA+AGG | 0.474842 | 2_2:-7280516 | None:intergenic |
| GCCGCATGAGGGGCATTCAA+TGG | 0.476343 | 2_2:-7278242 | None:intergenic |
| TACACCAACTATTGCAAAGA+AGG | 0.482059 | 2_2:+7280666 | Msa0234510:CDS |
| TGCTATGACCAACATGCATA+TGG | 0.484398 | 2_2:-7280944 | None:intergenic |
| CCTTCCAAAGCATACACAAC+AGG | 0.484981 | 2_2:+7280516 | Msa0234510:CDS |
| TGCAAACAAAGTAAGAGTAC+TGG | 0.494119 | 2_2:+7281046 | Msa0234510:CDS |
| TAATGAAGGAAGGAATAAGT+TGG | 0.496812 | 2_2:+7281149 | Msa0234510:three_prime_UTR |
| GAATTGCCGGGGTTACCAGC+TGG | 0.498475 | 2_2:+7278563 | Msa0234510:CDS |
| GGTGGAGTTAATGAATTGCC+GGG | 0.501114 | 2_2:+7278551 | Msa0234510:CDS |
| TTCAATATTATGGCCGCATG+AGG | 0.506854 | 2_2:-7278254 | None:intergenic |
| AAAACCAGAGAAGACTAATT+GGG | 0.508959 | 2_2:+7280689 | Msa0234510:CDS |
| TACTGGAGAGAAAGTAACAT+TGG | 0.511432 | 2_2:+7281063 | Msa0234510:exon |
| TATGGGATTGTAATGAAGGA+AGG | 0.513560 | 2_2:+7281139 | Msa0234510:three_prime_UTR |
| AAAATAATCAACAAAGGAAG+TGG | 0.515719 | 2_2:+7280843 | Msa0234510:CDS |
| TCAATATTATGGCCGCATGA+GGG | 0.518397 | 2_2:-7278253 | None:intergenic |
| GTTGCAGGAGTTAGCAAAGA+TGG | 0.520564 | 2_2:+7280468 | Msa0234510:intron |
| ATGGAATTACCATGTTGTCT+AGG | 0.524147 | 2_2:-7280795 | None:intergenic |
| AACATGGCTGTTCAAAGTGA+TGG | 0.524451 | 2_2:+7280996 | Msa0234510:CDS |
| ACACACCCAGCACAATTACC+AGG | 0.525873 | 2_2:+7278719 | Msa0234510:CDS |
| ATTAAGAGCTACATTGTTGG+AGG | 0.531511 | 2_2:-7280886 | None:intergenic |
| GTGATGCATCAATACCATCT+TGG | 0.536511 | 2_2:+7280711 | Msa0234510:CDS |
| AAGAAGGAATTGAAACAAGA+TGG | 0.540463 | 2_2:+7280571 | Msa0234510:CDS |
| ATCAACAAAGGAAGTGGCCA+TGG | 0.542226 | 2_2:+7280849 | Msa0234510:CDS |
| ATGTTTGGTATAATTAGTTG+TGG | 0.542896 | 2_2:-7280978 | None:intergenic |
| ATGAATGAAGAAGAAAGAGA+TGG | 0.549873 | 2_2:+7280735 | Msa0234510:CDS |
| AAACAAGATGGCACAAAACT+GGG | 0.551473 | 2_2:+7280583 | Msa0234510:CDS |
| TTCACTCCAGCTGGTAACCC+CGG | 0.559582 | 2_2:-7278569 | None:intergenic |
| AAGGTTCACACTGATGAAGA+AGG | 0.564034 | 2_2:+7280555 | Msa0234510:CDS |
| CAATATTATGGCCGCATGAG+GGG | 0.567135 | 2_2:-7278252 | None:intergenic |
| AGGAACAAGGAAAAGAAGAA+AGG | 0.568088 | 2_2:+7280536 | Msa0234510:CDS |
| CAACAATGTAGCTCTTAATG+TGG | 0.583204 | 2_2:+7280890 | Msa0234510:CDS |
| GGTATGAACTCATCAATAAG+TGG | 0.587548 | 2_2:-7278665 | None:intergenic |
| CAGACACAGCCTAGACAACA+TGG | 0.594185 | 2_2:+7280786 | Msa0234510:CDS |
| AATTATGACCATATGCATGT+TGG | 0.599378 | 2_2:+7280936 | Msa0234510:CDS |
| ACCATTGAATGCCCCTCATG+CGG | 0.616642 | 2_2:+7278241 | Msa0234510:CDS |
| AGAAGTACTAGAGCATTTGG+AGG | 0.620573 | 2_2:+7278610 | Msa0234510:CDS |
| ACAACTAATTATACCAAACA+TGG | 0.621621 | 2_2:+7280980 | Msa0234510:CDS |
| AAGCATACACAACAGGAACA+AGG | 0.635238 | 2_2:+7280523 | Msa0234510:CDS |
| AGGCTGCACTGTTATTACCA+TGG | 0.642479 | 2_2:-7280866 | None:intergenic |
| AGAGATTAAGAACTATGGCA+TGG | 0.652933 | 2_2:+7278143 | Msa0234510:exon |
| TATGCATGTTGGTCATAGCA+GGG | 0.654809 | 2_2:+7280947 | Msa0234510:CDS |
| AAGGAAAAGTGTGAGCACAC+AGG | 0.674376 | 2_2:+7278016 | Msa0234510:five_prime_UTR |
| GTGGAGTTAATGAATTGCCG+GGG | 0.680068 | 2_2:+7278552 | Msa0234510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAGTTTTTTTTTTTTTTGA+AGG | + | chr2_2:7278430-7278449 | Msa0234510:intron | 10.0% |
| !! | TTAAATTAAATATAAAAACC+TGG | - | chr2_2:7278740-7278759 | None:intergenic | 10.0% |
| !!! | TGAAATAGATTTTAATTATA+AGG | + | chr2_2:7279225-7279244 | Msa0234510:intron | 10.0% |
| !!! | CATATTTTGCTTTATTATTA+GGG | + | chr2_2:7278106-7278125 | Msa0234510:intron | 15.0% |
| !!! | GATTTTTTACTTCAATATTA+TGG | - | chr2_2:7278267-7278286 | None:intergenic | 15.0% |
| !! | TAATATTGAAGTAAAAAATC+AGG | + | chr2_2:7278267-7278286 | Msa0234510:CDS | 15.0% |
| !! | TAAACTAAAGGAATTAATAT+CGG | - | chr2_2:7278493-7278512 | None:intergenic | 15.0% |
| !! | ATTAAAATGATTTAGAGATT+TGG | + | chr2_2:7278779-7278798 | Msa0234510:intron | 15.0% |
| !!! | AATTAATTAATTTGATGCAT+GGG | - | chr2_2:7278868-7278887 | None:intergenic | 15.0% |
| !!! | TAATTAATTAATTTGATGCA+TGG | - | chr2_2:7278869-7278888 | None:intergenic | 15.0% |
| !!! | AATAGATTTTAATTATAAGG+CGG | + | chr2_2:7279228-7279247 | Msa0234510:intron | 15.0% |
| !! | AAAGAAAATTATTTGTCAAT+TGG | + | chr2_2:7279346-7279365 | Msa0234510:intron | 15.0% |
| !! | AAGAAAATTATTTGTCAATT+GGG | + | chr2_2:7279347-7279366 | Msa0234510:intron | 15.0% |
| !! | TTAATATTACATTGAGAAAA+AGG | + | chr2_2:7280379-7280398 | Msa0234510:intron | 15.0% |
| !! | TATGAAAAAATAATCAACAA+AGG | + | chr2_2:7280837-7280856 | Msa0234510:CDS | 15.0% |
| !! | ATAAAGCAAAATATGGAAAA+AGG | - | chr2_2:7278101-7278120 | None:intergenic | 20.0% |
| !! | CCTAATAATAAAGCAAAATA+TGG | - | chr2_2:7278108-7278127 | None:intergenic | 20.0% |
| !!! | CCATATTTTGCTTTATTATT+AGG | + | chr2_2:7278105-7278124 | Msa0234510:intron | 20.0% |
| !! | CACACAAATTAATAAACTAA+AGG | - | chr2_2:7278505-7278524 | None:intergenic | 20.0% |
| !!! | TTTGATGATTTTTGATACAT+AGG | + | chr2_2:7278529-7278548 | Msa0234510:intron | 20.0% |
| !!! | TTGATGATTTTTGATACATA+GGG | + | chr2_2:7278530-7278549 | Msa0234510:intron | 20.0% |
| !!! | ATTAATTAATTTGATGCATG+GGG | - | chr2_2:7278867-7278886 | None:intergenic | 20.0% |
| !! | AGAAAATTATTTGTCAATTG+GGG | + | chr2_2:7279348-7279367 | Msa0234510:intron | 20.0% |
| !!! | TTTTCATAAGTTAGTAGAAA+GGG | - | chr2_2:7279389-7279408 | None:intergenic | 20.0% |
| !!! | ATTTTCATAAGTTAGTAGAA+AGG | - | chr2_2:7279390-7279409 | None:intergenic | 20.0% |
| !!! | TGATTATTTTTTGTGAATTG+TGG | + | chr2_2:7279454-7279473 | Msa0234510:intron | 20.0% |
| !!! | TAATTTGTTACTGTAACATT+AGG | + | chr2_2:7279742-7279761 | Msa0234510:intron | 20.0% |
| !!! | AAAAATTGTTCCTTAAGTTT+TGG | + | chr2_2:7279793-7279812 | Msa0234510:intron | 20.0% |
| !! | ACACAAAAAAAAAAGGTAAT+TGG | - | chr2_2:7279823-7279842 | None:intergenic | 20.0% |
| !!! | ATTACCTTTTTTTTTTGTGT+TGG | + | chr2_2:7279823-7279842 | Msa0234510:intron | 20.0% |
| !!! | TTACCTTTTTTTTTTGTGTT+GGG | + | chr2_2:7279824-7279843 | Msa0234510:intron | 20.0% |
| !! | GTGATACATTATTAATCAAA+AGG | - | chr2_2:7279895-7279914 | None:intergenic | 20.0% |
| !! | AAGTGAATAAGAATTTGTAA+AGG | - | chr2_2:7280179-7280198 | None:intergenic | 20.0% |
| !!! | GAAATATATTGACTTGAAAA+CGG | + | chr2_2:7280310-7280329 | Msa0234510:intron | 20.0% |
| !! | TTCACTAACATTTACATTTA+TGG | + | chr2_2:7281121-7281140 | Msa0234510:three_prime_UTR | 20.0% |
| !! | TCACTAACATTTACATTTAT+GGG | + | chr2_2:7281122-7281141 | Msa0234510:three_prime_UTR | 20.0% |
| !!! | ATTTAGGATATACTATATGT+TGG | + | chr2_2:7281191-7281210 | Msa0234510:three_prime_UTR | 20.0% |
| ! | TTTGATCTTAAATCTTGCTA+AGG | + | chr2_2:7278326-7278345 | Msa0234510:intron | 25.0% |
| ! | CATTGCATGTGTTAATTATT+GGG | + | chr2_2:7278816-7278835 | Msa0234510:intron | 25.0% |
| !!! | TCAAATTGCTATTGATGTTT+TGG | - | chr2_2:7279709-7279728 | None:intergenic | 25.0% |
| ! | GTTACAGTAACAAATTACTT+AGG | - | chr2_2:7279739-7279758 | None:intergenic | 25.0% |
| !!! | AATTGGTTTTCCAAAACTTA+AGG | - | chr2_2:7279806-7279825 | None:intergenic | 25.0% |
| ! | GTACCAAAAGAAATAGAATT+GGG | - | chr2_2:7279917-7279936 | None:intergenic | 25.0% |
| ! | TGTACCAAAAGAAATAGAAT+TGG | - | chr2_2:7279918-7279937 | None:intergenic | 25.0% |
| ! | TGAATTACTAATAAGAGAGA+AGG | - | chr2_2:7280063-7280082 | None:intergenic | 25.0% |
| ! | AATTTGTAAAGGAACTCATA+TGG | - | chr2_2:7280168-7280187 | None:intergenic | 25.0% |
| !!! | GACACTTATTTTAAAAGAGA+CGG | + | chr2_2:7280408-7280427 | Msa0234510:intron | 25.0% |
| !!! | ACTAGAGCAATTTTTTCTAA+TGG | + | chr2_2:7280609-7280628 | Msa0234510:CDS | 25.0% |
| ! | TGAATCTCTTACATTGTTAA+TGG | - | chr2_2:7280817-7280836 | None:intergenic | 25.0% |
| ! | AAAATAATCAACAAAGGAAG+TGG | + | chr2_2:7280843-7280862 | Msa0234510:CDS | 25.0% |
| ! | ATGTTTGGTATAATTAGTTG+TGG | - | chr2_2:7280981-7281000 | None:intergenic | 25.0% |
| ! | ACAACTAATTATACCAAACA+TGG | + | chr2_2:7280980-7280999 | Msa0234510:CDS | 25.0% |
| ! | AACTATTATTCGCTTATCAA+TGG | + | chr2_2:7281019-7281038 | Msa0234510:CDS | 25.0% |
| ! | ATTCGAGATAATTGGAATTT+AGG | + | chr2_2:7281175-7281194 | Msa0234510:three_prime_UTR | 25.0% |
| ! | TACAGTAGTTTGTATCTTTC+GGG | - | chr2_2:7278072-7278091 | None:intergenic | 30.0% |
| ! | CTACAGTAGTTTGTATCTTT+CGG | - | chr2_2:7278073-7278092 | None:intergenic | 30.0% |
| AAAAATCAGGTACTAATCAG+TGG | + | chr2_2:7278280-7278299 | Msa0234510:intron | 30.0% | |
| ! | ATGATTTTTGATACATAGGG+TGG | + | chr2_2:7278533-7278552 | Msa0234510:intron | 30.0% |
| CTAGTACTTCTACATCATTT+GGG | - | chr2_2:7278601-7278620 | None:intergenic | 30.0% | |
| TCTAGTACTTCTACATCATT+TGG | - | chr2_2:7278602-7278621 | None:intergenic | 30.0% | |
| GCATTGCATGTGTTAATTAT+TGG | + | chr2_2:7278815-7278834 | Msa0234510:intron | 30.0% | |
| !! | CTTGGACATGTATTTTGAAA+CGG | - | chr2_2:7278942-7278961 | None:intergenic | 30.0% |
| TAACAGTCAAAATTGTGCAT+TGG | - | chr2_2:7278983-7279002 | None:intergenic | 30.0% | |
| ATAGTGCACATTGCAAAAAA+TGG | + | chr2_2:7279145-7279164 | Msa0234510:intron | 30.0% | |
| !!! | GACATGTATTTTGAAACGAA+GGG | + | chr2_2:7279167-7279186 | Msa0234510:intron | 30.0% |
| TGTGAATTGTGGAAAAAACA+TGG | + | chr2_2:7279465-7279484 | Msa0234510:intron | 30.0% | |
| AAACCAATGAATGCTTGAAT+TGG | + | chr2_2:7279574-7279593 | Msa0234510:intron | 30.0% | |
| CATCCCAACACAAAAAAAAA+AGG | - | chr2_2:7279830-7279849 | None:intergenic | 30.0% | |
| !! | TCACCCAATTCTATTTCTTT+TGG | + | chr2_2:7279911-7279930 | Msa0234510:intron | 30.0% |
| ATATGTGTGTGTGTGTATAT+TGG | + | chr2_2:7279989-7280008 | Msa0234510:intron | 30.0% | |
| TGTGTGTATATTGGTGAATT+GGG | + | chr2_2:7279998-7280017 | Msa0234510:intron | 30.0% | |
| TGGTGGAAATAGAGTAATTA+AGG | - | chr2_2:7280100-7280119 | None:intergenic | 30.0% | |
| ATTGTTACCTAAAATGTTGC+AGG | + | chr2_2:7280453-7280472 | Msa0234510:intron | 30.0% | |
| AAGAAGGAATTGAAACAAGA+TGG | + | chr2_2:7280571-7280590 | Msa0234510:CDS | 30.0% | |
| !!! | TTTTTCTAATGGTGTTGTGA+AGG | + | chr2_2:7280620-7280639 | Msa0234510:CDS | 30.0% |
| !!! | TTTTCTAATGGTGTTGTGAA+GGG | + | chr2_2:7280621-7280640 | Msa0234510:CDS | 30.0% |
| GAAGGGATTTAAGAAGATAT+TGG | + | chr2_2:7280638-7280657 | Msa0234510:CDS | 30.0% | |
| ! | TTTTCCTTCTTTGCAATAGT+TGG | - | chr2_2:7280673-7280692 | None:intergenic | 30.0% |
| AAAACCAGAGAAGACTAATT+GGG | + | chr2_2:7280689-7280708 | Msa0234510:CDS | 30.0% | |
| ATGAATGAAGAAGAAAGAGA+TGG | + | chr2_2:7280735-7280754 | Msa0234510:CDS | 30.0% | |
| AATTATGACCATATGCATGT+TGG | + | chr2_2:7280936-7280955 | Msa0234510:CDS | 30.0% | |
| CATTTATGGGATTGTAATGA+AGG | + | chr2_2:7281135-7281154 | Msa0234510:three_prime_UTR | 30.0% | |
| TAATGAAGGAAGGAATAAGT+TGG | + | chr2_2:7281149-7281168 | Msa0234510:three_prime_UTR | 30.0% | |
| TTATTAGGGACCAGTATTGT+AGG | + | chr2_2:7278120-7278139 | Msa0234510:intron | 35.0% | |
| CTTAATCTCTCCTACAATAC+TGG | - | chr2_2:7278133-7278152 | None:intergenic | 35.0% | |
| GTAGGAGAGATTAAGAACTA+TGG | + | chr2_2:7278138-7278157 | Msa0234510:exon | 35.0% | |
| AGAGATTAAGAACTATGGCA+TGG | + | chr2_2:7278143-7278162 | Msa0234510:exon | 35.0% | |
| ! | CTCAAGCTCTGGTAATTAAA+AGG | + | chr2_2:7278354-7278373 | Msa0234510:intron | 35.0% |
| !! | TGTAGAAGTACTAGAGCATT+TGG | + | chr2_2:7278607-7278626 | Msa0234510:CDS | 35.0% |
| GGTATGAACTCATCAATAAG+TGG | - | chr2_2:7278668-7278687 | None:intergenic | 35.0% | |
| AAAAACCTGGTAATTGTGCT+GGG | - | chr2_2:7278727-7278746 | None:intergenic | 35.0% | |
| TAAAAACCTGGTAATTGTGC+TGG | - | chr2_2:7278728-7278747 | None:intergenic | 35.0% | |
| AACACATGCAATGCATCAAA+CGG | - | chr2_2:7278809-7278828 | None:intergenic | 35.0% | |
| !!! | GACATGTATTTTGAAACGGA+GGG | - | chr2_2:7278938-7278957 | None:intergenic | 35.0% |
| !!! | GGACATGTATTTTGAAACGA+AGG | + | chr2_2:7279166-7279185 | Msa0234510:intron | 35.0% |
| ! | TAGAGAGCATAAATGTTCTG+TGG | - | chr2_2:7279265-7279284 | None:intergenic | 35.0% |
| TTTCTTTGCTTGCAATTGCA+AGG | - | chr2_2:7279316-7279335 | None:intergenic | 35.0% | |
| !! | AAAATTACACACTCTAGGAC+TGG | - | chr2_2:7279509-7279528 | None:intergenic | 35.0% |
| ! | TCCTAGAGTGTGTAATTTTC+AGG | + | chr2_2:7279510-7279529 | Msa0234510:intron | 35.0% |
| TTGCCAATTCAAGCATTCAT+TGG | - | chr2_2:7279580-7279599 | None:intergenic | 35.0% | |
| GTGTGTGTATATTGGTGAAT+TGG | + | chr2_2:7279997-7280016 | Msa0234510:intron | 35.0% | |
| TAACACTATGATGAACATGG+TGG | - | chr2_2:7280117-7280136 | None:intergenic | 35.0% | |
| GCATAACACTATGATGAACA+TGG | - | chr2_2:7280120-7280139 | None:intergenic | 35.0% | |
| GTTCATCATAGTGTTATGCA+TGG | + | chr2_2:7280121-7280140 | Msa0234510:intron | 35.0% | |
| TTGTCGTAGACAAAAATGTG+CGG | + | chr2_2:7280286-7280305 | Msa0234510:intron | 35.0% | |
| TGGAAGGTCTATGAAAAAAG+TGG | - | chr2_2:7280503-7280522 | None:intergenic | 35.0% | |
| AGGAACAAGGAAAAGAAGAA+AGG | + | chr2_2:7280536-7280555 | Msa0234510:CDS | 35.0% | |
| AAACAAGATGGCACAAAACT+GGG | + | chr2_2:7280583-7280602 | Msa0234510:CDS | 35.0% | |
| TACACCAACTATTGCAAAGA+AGG | + | chr2_2:7280666-7280685 | Msa0234510:CDS | 35.0% | |
| GAAAACCAGAGAAGACTAAT+TGG | + | chr2_2:7280688-7280707 | Msa0234510:CDS | 35.0% | |
| CTTCTTCATTCATACCAAGA+TGG | - | chr2_2:7280728-7280747 | None:intergenic | 35.0% | |
| ATGGAATTACCATGTTGTCT+AGG | - | chr2_2:7280798-7280817 | None:intergenic | 35.0% | |
| ATTAAGAGCTACATTGTTGG+AGG | - | chr2_2:7280889-7280908 | None:intergenic | 35.0% | |
| CACATTAAGAGCTACATTGT+TGG | - | chr2_2:7280892-7280911 | None:intergenic | 35.0% | |
| CAACAATGTAGCTCTTAATG+TGG | + | chr2_2:7280890-7280909 | Msa0234510:CDS | 35.0% | |
| ! | TGCAAACAAAGTAAGAGTAC+TGG | + | chr2_2:7281046-7281065 | Msa0234510:CDS | 35.0% |
| TACTGGAGAGAAAGTAACAT+TGG | + | chr2_2:7281063-7281082 | Msa0234510:exon | 35.0% | |
| TATGGGATTGTAATGAAGGA+AGG | + | chr2_2:7281139-7281158 | Msa0234510:three_prime_UTR | 35.0% | |
| ! | GTTGGCTTATTCGAGATAAT+TGG | + | chr2_2:7281167-7281186 | Msa0234510:three_prime_UTR | 35.0% |
| TGACTCTGATTGAAGTTTAG+AGG | + | chr2_2:7281235-7281254 | Msa0234510:three_prime_UTR | 35.0% | |
| TCAATATTATGGCCGCATGA+GGG | - | chr2_2:7278256-7278275 | None:intergenic | 40.0% | |
| TTCAATATTATGGCCGCATG+AGG | - | chr2_2:7278257-7278276 | None:intergenic | 40.0% | |
| TAATTACCAGAGCTTGAGAC+TGG | - | chr2_2:7278352-7278371 | None:intergenic | 40.0% | |
| !! | AGAAGTACTAGAGCATTTGG+AGG | + | chr2_2:7278610-7278629 | Msa0234510:CDS | 40.0% |
| !!! | GGACATGTATTTTGAAACGG+AGG | - | chr2_2:7278939-7278958 | None:intergenic | 40.0% |
| GCAATTGCAAGGACTAAGTA+AGG | - | chr2_2:7279305-7279324 | None:intergenic | 40.0% | |
| GCCTGAAAATTACACACTCT+AGG | - | chr2_2:7279514-7279533 | None:intergenic | 40.0% | |
| TGTAACACACTTCAACGAGT+TGG | - | chr2_2:7279552-7279571 | None:intergenic | 40.0% | |
| ATGACCACCAAACTCTCAAT+AGG | + | chr2_2:7279604-7279623 | Msa0234510:intron | 40.0% | |
| TGACCACCAAACTCTCAATA+GGG | + | chr2_2:7279605-7279624 | Msa0234510:intron | 40.0% | |
| !!! | ATAGGGGCATCCTATTTTGA+TGG | + | chr2_2:7279622-7279641 | Msa0234510:intron | 40.0% |
| !!! | TAGGGGCATCCTATTTTGAT+GGG | + | chr2_2:7279623-7279642 | Msa0234510:intron | 40.0% |
| GAAAAAGCCCCCATCAAAAT+AGG | - | chr2_2:7279635-7279654 | None:intergenic | 40.0% | |
| TGTTGGGATGTTTACACTCT+TGG | + | chr2_2:7279840-7279859 | Msa0234510:intron | 40.0% | |
| ! | GCTAACTCCTGCAACATTTT+AGG | - | chr2_2:7280463-7280482 | None:intergenic | 40.0% |
| TGTTCCTGTTGTGTATGCTT+TGG | - | chr2_2:7280523-7280542 | None:intergenic | 40.0% | |
| AAGCATACACAACAGGAACA+AGG | + | chr2_2:7280523-7280542 | Msa0234510:CDS | 40.0% | |
| AAGGTTCACACTGATGAAGA+AGG | + | chr2_2:7280555-7280574 | Msa0234510:CDS | 40.0% | |
| GAAACAAGATGGCACAAAAC+TGG | + | chr2_2:7280582-7280601 | Msa0234510:CDS | 40.0% | |
| !! | ATCACCCAATTAGTCTTCTC+TGG | - | chr2_2:7280696-7280715 | None:intergenic | 40.0% |
| GTGATGCATCAATACCATCT+TGG | + | chr2_2:7280711-7280730 | Msa0234510:CDS | 40.0% | |
| TGCTATGACCAACATGCATA+TGG | - | chr2_2:7280947-7280966 | None:intergenic | 40.0% | |
| ATATGCATGTTGGTCATAGC+AGG | + | chr2_2:7280946-7280965 | Msa0234510:CDS | 40.0% | |
| TATGCATGTTGGTCATAGCA+GGG | + | chr2_2:7280947-7280966 | Msa0234510:CDS | 40.0% | |
| TCACTTTGAACAGCCATGTT+TGG | - | chr2_2:7280996-7281015 | None:intergenic | 40.0% | |
| AACATGGCTGTTCAAAGTGA+TGG | + | chr2_2:7280996-7281015 | Msa0234510:CDS | 40.0% | |
| GTAACATTGGAAGAGCTTCT+TGG | + | chr2_2:7281076-7281095 | Msa0234510:exon | 40.0% | |
| TAGCACACACAGACAGAAGA+AGG | + | chr2_2:7277997-7278016 | Msa0234510:intron | 45.0% | |
| ! | AAGGAAAAGTGTGAGCACAC+AGG | + | chr2_2:7278016-7278035 | Msa0234510:five_prime_UTR | 45.0% |
| CAATATTATGGCCGCATGAG+GGG | - | chr2_2:7278255-7278274 | None:intergenic | 45.0% | |
| GGGTGGAGTTAATGAATTGC+CGG | + | chr2_2:7278550-7278569 | Msa0234510:intron | 45.0% | |
| GGTGGAGTTAATGAATTGCC+GGG | + | chr2_2:7278551-7278570 | Msa0234510:CDS | 45.0% | |
| GTGGAGTTAATGAATTGCCG+GGG | + | chr2_2:7278552-7278571 | Msa0234510:CDS | 45.0% | |
| GAGTTCATACCAACGCTTCA+AGG | + | chr2_2:7278677-7278696 | Msa0234510:CDS | 45.0% | |
| CCATTATCTCCTTGAAGCGT+TGG | - | chr2_2:7278689-7278708 | None:intergenic | 45.0% | |
| CCAACGCTTCAAGGAGATAA+TGG | + | chr2_2:7278686-7278705 | Msa0234510:CDS | 45.0% | |
| AGACACGATCTTGTTCTGCA+CGG | + | chr2_2:7278839-7278858 | Msa0234510:intron | 45.0% | |
| CATGTGTGAAGTGGTTGACT+TGG | - | chr2_2:7278960-7278979 | None:intergenic | 45.0% | |
| GACCACCAAACTCTCAATAG+GGG | + | chr2_2:7279606-7279625 | Msa0234510:intron | 45.0% | |
| !!! | AGGGGCATCCTATTTTGATG+GGG | + | chr2_2:7279624-7279643 | Msa0234510:intron | 45.0% |
| GTTGCAGGAGTTAGCAAAGA+TGG | + | chr2_2:7280468-7280487 | Msa0234510:intron | 45.0% | |
| ! | CCTGTTGTGTATGCTTTGGA+AGG | - | chr2_2:7280519-7280538 | None:intergenic | 45.0% |
| CCTTCCAAAGCATACACAAC+AGG | + | chr2_2:7280516-7280535 | Msa0234510:CDS | 45.0% | |
| ATCAACAAAGGAAGTGGCCA+TGG | + | chr2_2:7280849-7280868 | Msa0234510:CDS | 45.0% | |
| AGGCTGCACTGTTATTACCA+TGG | - | chr2_2:7280869-7280888 | None:intergenic | 45.0% | |
| !!! | GTTTTATAATTTTTTTTTTT+TGG | + | chr2_2:7278895-7278914 | Msa0234510:intron | 5.0% |
| !! | TATAGATTATTTAAAAAATA+TGG | + | chr2_2:7279104-7279123 | Msa0234510:intron | 5.0% |
| ACCATTGAATGCCCCTCATG+CGG | + | chr2_2:7278241-7278260 | Msa0234510:CDS | 50.0% | |
| GGGTCAAATTTCACTCCAGC+TGG | - | chr2_2:7278581-7278600 | None:intergenic | 50.0% | |
| ACACACCCAGCACAATTACC+AGG | + | chr2_2:7278719-7278738 | Msa0234510:CDS | 50.0% | |
| ! | GTGCATTGGCATGTGTGAAG+TGG | - | chr2_2:7278969-7278988 | None:intergenic | 50.0% |
| TGCCCCTATTGAGAGTTTGG+TGG | - | chr2_2:7279611-7279630 | None:intergenic | 50.0% | |
| GGATGCCCCTATTGAGAGTT+TGG | - | chr2_2:7279614-7279633 | None:intergenic | 50.0% | |
| !!! | GGGGCATCCTATTTTGATGG+GGG | + | chr2_2:7279625-7279644 | Msa0234510:intron | 50.0% |
| CAGACACAGCCTAGACAACA+TGG | + | chr2_2:7280786-7280805 | Msa0234510:CDS | 50.0% | |
| CTAAGGCCAGTCTCAAGCTC+TGG | + | chr2_2:7278343-7278362 | Msa0234510:intron | 55.0% | |
| TTCACTCCAGCTGGTAACCC+CGG | - | chr2_2:7278572-7278591 | None:intergenic | 55.0% | |
| !! | GCCGCATGAGGGGCATTCAA+TGG | - | chr2_2:7278245-7278264 | None:intergenic | 60.0% |
| GAATTGCCGGGGTTACCAGC+TGG | + | chr2_2:7278563-7278582 | Msa0234510:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 7277952 | 7281259 | 7277952 | ID=Msa0234510;Name=Msa0234510 |
| chr2_2 | mRNA | 7277952 | 7281259 | 7277952 | ID=Msa0234510-mRNA-1;Parent=Msa0234510;Name=Msa0234510-mRNA-1;_AED=0.41;_eAED=0.41;_QI=96|1|1|1|0.5|0.4|5|180|308 |
| chr2_2 | exon | 7277952 | 7277995 | 7277952 | ID=Msa0234510-mRNA-1:exon:3122;Parent=Msa0234510-mRNA-1 |
| chr2_2 | exon | 7278016 | 7278037 | 7278016 | ID=Msa0234510-mRNA-1:exon:3123;Parent=Msa0234510-mRNA-1 |
| chr2_2 | exon | 7278127 | 7278288 | 7278127 | ID=Msa0234510-mRNA-1:exon:3124;Parent=Msa0234510-mRNA-1 |
| chr2_2 | exon | 7278551 | 7278740 | 7278551 | ID=Msa0234510-mRNA-1:exon:3125;Parent=Msa0234510-mRNA-1 |
| chr2_2 | exon | 7280475 | 7281259 | 7280475 | ID=Msa0234510-mRNA-1:exon:3126;Parent=Msa0234510-mRNA-1 |
| chr2_2 | five_prime_UTR | 7277952 | 7277995 | 7277952 | ID=Msa0234510-mRNA-1:five_prime_utr;Parent=Msa0234510-mRNA-1 |
| chr2_2 | five_prime_UTR | 7278016 | 7278037 | 7278016 | ID=Msa0234510-mRNA-1:five_prime_utr;Parent=Msa0234510-mRNA-1 |
| chr2_2 | five_prime_UTR | 7278127 | 7278156 | 7278127 | ID=Msa0234510-mRNA-1:five_prime_utr;Parent=Msa0234510-mRNA-1 |
| chr2_2 | CDS | 7278157 | 7278288 | 7278157 | ID=Msa0234510-mRNA-1:cds;Parent=Msa0234510-mRNA-1 |
| chr2_2 | CDS | 7278551 | 7278740 | 7278551 | ID=Msa0234510-mRNA-1:cds;Parent=Msa0234510-mRNA-1 |
| chr2_2 | CDS | 7280475 | 7281079 | 7280475 | ID=Msa0234510-mRNA-1:cds;Parent=Msa0234510-mRNA-1 |
| chr2_2 | three_prime_UTR | 7281080 | 7281259 | 7281080 | ID=Msa0234510-mRNA-1:three_prime_utr;Parent=Msa0234510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
