Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235270 | XP_013462554.1 | 98.137 | 161 | 2 | 1 | 1 | 160 | 1 | 161 | 3.57e-112 | 325 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235270 | sp|P68350|DOF15_ARATH | 62.609 | 115 | 23 | 1 | 8 | 102 | 4 | 118 | 7.73e-46 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235270 | A0A072V3I5 | 98.137 | 161 | 2 | 1 | 1 | 160 | 1 | 161 | 1.71e-112 | 325 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0235270 | TF | C2C2-Dof |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235270 | MtrunA17_Chr2g0283811 | 98.137 | 161 | 2 | 1 | 1 | 160 | 1 | 161 | 3.29e-116 | 325 |
| Msa0235270 | MtrunA17_Chr6g0453321 | 70.370 | 81 | 23 | 1 | 19 | 99 | 110 | 189 | 1.58e-36 | 131 |
| Msa0235270 | MtrunA17_Chr4g0042481 | 67.500 | 80 | 26 | 0 | 20 | 99 | 96 | 175 | 1.56e-35 | 128 |
| Msa0235270 | MtrunA17_Chr7g0217581 | 71.053 | 76 | 21 | 1 | 24 | 99 | 211 | 285 | 1.24e-34 | 127 |
| Msa0235270 | MtrunA17_Chr8g0355261 | 67.105 | 76 | 24 | 1 | 25 | 99 | 96 | 171 | 4.25e-34 | 124 |
| Msa0235270 | MtrunA17_Chr7g0254161 | 71.233 | 73 | 20 | 1 | 28 | 99 | 82 | 154 | 6.23e-33 | 120 |
| Msa0235270 | MtrunA17_Chr6g0460731 | 73.239 | 71 | 18 | 1 | 30 | 99 | 79 | 149 | 6.45e-32 | 117 |
| Msa0235270 | MtrunA17_Chr5g0417551 | 60.714 | 84 | 31 | 1 | 18 | 99 | 97 | 180 | 2.71e-31 | 115 |
| Msa0235270 | MtrunA17_Chr3g0092111 | 57.778 | 90 | 29 | 1 | 19 | 99 | 100 | 189 | 5.22e-31 | 115 |
| Msa0235270 | MtrunA17_Chr5g0417601 | 70.423 | 71 | 18 | 1 | 32 | 99 | 123 | 193 | 1.59e-30 | 113 |
| Msa0235270 | MtrunA17_Chr6g0460721 | 69.014 | 71 | 21 | 1 | 30 | 99 | 72 | 142 | 1.70e-30 | 112 |
| Msa0235270 | MtrunA17_Chr5g0417571 | 71.667 | 60 | 17 | 0 | 40 | 99 | 132 | 191 | 7.23e-30 | 110 |
| Msa0235270 | MtrunA17_Chr5g0417561 | 67.647 | 68 | 22 | 0 | 32 | 99 | 105 | 172 | 8.17e-30 | 111 |
| Msa0235270 | MtrunA17_Chr2g0328021 | 55.263 | 76 | 34 | 0 | 24 | 99 | 40 | 115 | 2.61e-27 | 103 |
| Msa0235270 | MtrunA17_Chr8g0367161 | 47.000 | 100 | 51 | 1 | 24 | 123 | 12 | 109 | 2.75e-26 | 101 |
| Msa0235270 | MtrunA17_Chr8g0341671 | 59.155 | 71 | 23 | 1 | 34 | 98 | 2 | 72 | 3.98e-26 | 98.6 |
| Msa0235270 | MtrunA17_Chr8g0374251 | 48.515 | 101 | 39 | 3 | 48 | 138 | 70 | 167 | 8.32e-26 | 100 |
| Msa0235270 | MtrunA17_Chr4g0010151 | 70.175 | 57 | 17 | 0 | 43 | 99 | 79 | 135 | 1.36e-25 | 100 |
| Msa0235270 | MtrunA17_Chr8g0374111 | 71.154 | 52 | 15 | 0 | 46 | 97 | 29 | 80 | 4.17e-25 | 96.3 |
| Msa0235270 | MtrunA17_Chr8g0346551 | 63.636 | 66 | 22 | 1 | 36 | 99 | 12 | 77 | 5.55e-25 | 97.1 |
| Msa0235270 | MtrunA17_Chr4g0031411 | 64.286 | 70 | 24 | 1 | 43 | 111 | 72 | 141 | 8.86e-25 | 97.4 |
| Msa0235270 | MtrunA17_Chr2g0326001 | 55.263 | 76 | 34 | 0 | 24 | 99 | 18 | 93 | 1.20e-24 | 96.7 |
| Msa0235270 | MtrunA17_Chr3g0127201 | 64.912 | 57 | 20 | 0 | 43 | 99 | 24 | 80 | 1.42e-24 | 96.3 |
| Msa0235270 | MtrunA17_Chr4g0061761 | 69.811 | 53 | 16 | 0 | 44 | 96 | 38 | 90 | 1.75e-24 | 96.7 |
| Msa0235270 | MtrunA17_Chr2g0308011 | 73.469 | 49 | 13 | 0 | 46 | 94 | 37 | 85 | 2.68e-24 | 94.0 |
| Msa0235270 | MtrunA17_Chr4g0047001 | 56.098 | 82 | 27 | 2 | 48 | 120 | 57 | 138 | 3.36e-24 | 96.7 |
| Msa0235270 | MtrunA17_Chr7g0223311 | 76.000 | 50 | 12 | 0 | 48 | 97 | 79 | 128 | 4.09e-24 | 96.3 |
| Msa0235270 | MtrunA17_Chr7g0237921 | 68.421 | 57 | 18 | 0 | 43 | 99 | 73 | 129 | 8.76e-24 | 95.1 |
| Msa0235270 | MtrunA17_Chr1g0188851 | 54.412 | 68 | 31 | 0 | 30 | 97 | 27 | 94 | 1.25e-23 | 93.6 |
| Msa0235270 | MtrunA17_Chr5g0411951 | 68.519 | 54 | 17 | 0 | 43 | 96 | 40 | 93 | 1.84e-23 | 94.0 |
| Msa0235270 | MtrunA17_Chr4g0047761 | 67.308 | 52 | 17 | 0 | 48 | 99 | 74 | 125 | 8.24e-23 | 92.0 |
| Msa0235270 | MtrunA17_Chr4g0030051 | 54.054 | 74 | 34 | 0 | 24 | 97 | 19 | 92 | 8.86e-23 | 91.3 |
| Msa0235270 | MtrunA17_Chr2g0282441 | 53.333 | 75 | 28 | 1 | 30 | 97 | 2 | 76 | 1.01e-22 | 92.0 |
| Msa0235270 | MtrunA17_Chr1g0177251 | 64.516 | 62 | 21 | 1 | 39 | 99 | 4 | 65 | 1.11e-22 | 91.3 |
| Msa0235270 | MtrunA17_Chr3g0126201 | 65.517 | 58 | 20 | 0 | 42 | 99 | 47 | 104 | 1.23e-22 | 91.7 |
| Msa0235270 | MtrunA17_Chr2g0282511 | 71.429 | 49 | 14 | 0 | 46 | 94 | 45 | 93 | 1.52e-22 | 91.3 |
| Msa0235270 | MtrunA17_Chr2g0282051 | 41.489 | 94 | 50 | 1 | 6 | 99 | 11 | 99 | 1.99e-22 | 90.1 |
| Msa0235270 | MtrunA17_Chr3g0117601 | 66.667 | 51 | 17 | 0 | 46 | 96 | 61 | 111 | 1.23e-21 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235270 | AT1G29160.1 | 62.609 | 115 | 23 | 1 | 8 | 102 | 4 | 118 | 7.86e-47 | 150 |
| Msa0235270 | AT2G34140.1 | 63.964 | 111 | 24 | 1 | 8 | 102 | 4 | 114 | 1.43e-45 | 147 |
| Msa0235270 | AT5G62430.1 | 58.416 | 101 | 28 | 2 | 12 | 99 | 8 | 107 | 2.26e-35 | 125 |
| Msa0235270 | AT3G47500.1 | 66.250 | 80 | 27 | 0 | 20 | 99 | 84 | 163 | 5.84e-35 | 126 |
| Msa0235270 | AT5G39660.3 | 82.540 | 63 | 11 | 0 | 40 | 102 | 132 | 194 | 1.97e-34 | 125 |
| Msa0235270 | AT5G39660.1 | 82.540 | 63 | 11 | 0 | 40 | 102 | 132 | 194 | 1.97e-34 | 125 |
| Msa0235270 | AT5G39660.2 | 82.540 | 63 | 11 | 0 | 40 | 102 | 132 | 194 | 1.97e-34 | 125 |
| Msa0235270 | AT1G26790.1 | 56.311 | 103 | 38 | 1 | 23 | 125 | 88 | 183 | 4.57e-34 | 123 |
| Msa0235270 | AT1G69570.1 | 60.440 | 91 | 29 | 1 | 34 | 124 | 120 | 203 | 6.79e-33 | 120 |
| Msa0235270 | AT5G60850.1 | 57.692 | 78 | 33 | 0 | 46 | 123 | 51 | 128 | 8.75e-27 | 102 |
| Msa0235270 | AT1G51700.1 | 71.698 | 53 | 15 | 0 | 46 | 98 | 33 | 85 | 4.58e-26 | 98.2 |
| Msa0235270 | AT3G21270.1 | 76.923 | 52 | 12 | 0 | 46 | 97 | 29 | 80 | 1.07e-25 | 97.4 |
| Msa0235270 | AT2G28810.2 | 72.727 | 55 | 15 | 0 | 43 | 97 | 74 | 128 | 2.23e-25 | 99.4 |
| Msa0235270 | AT3G50410.1 | 71.698 | 53 | 15 | 0 | 46 | 98 | 30 | 82 | 3.07e-25 | 97.4 |
| Msa0235270 | AT2G28810.1 | 72.727 | 55 | 15 | 0 | 43 | 97 | 91 | 145 | 3.67e-25 | 99.0 |
| Msa0235270 | AT2G37590.1 | 68.421 | 57 | 18 | 0 | 43 | 99 | 86 | 142 | 9.04e-25 | 97.8 |
| Msa0235270 | AT3G55370.1 | 68.421 | 57 | 18 | 0 | 43 | 99 | 73 | 129 | 9.19e-25 | 97.8 |
| Msa0235270 | AT3G55370.2 | 68.421 | 57 | 18 | 0 | 43 | 99 | 73 | 129 | 1.01e-24 | 98.2 |
| Msa0235270 | AT3G55370.3 | 68.421 | 57 | 18 | 0 | 43 | 99 | 118 | 174 | 1.39e-24 | 97.8 |
| Msa0235270 | AT5G65590.1 | 68.421 | 57 | 18 | 0 | 43 | 99 | 38 | 94 | 1.52e-24 | 97.1 |
| Msa0235270 | AT1G07640.2 | 52.500 | 80 | 38 | 0 | 18 | 97 | 49 | 128 | 3.21e-24 | 96.3 |
| Msa0235270 | AT1G07640.1 | 76.000 | 50 | 12 | 0 | 48 | 97 | 23 | 72 | 3.68e-24 | 95.1 |
| Msa0235270 | AT1G07640.3 | 52.500 | 80 | 38 | 0 | 18 | 97 | 57 | 136 | 3.83e-24 | 96.3 |
| Msa0235270 | AT4G38000.1 | 62.712 | 59 | 21 | 1 | 43 | 100 | 38 | 96 | 9.20e-24 | 93.6 |
| Msa0235270 | AT5G66940.1 | 67.925 | 53 | 17 | 0 | 46 | 98 | 32 | 84 | 9.55e-24 | 93.2 |
| Msa0235270 | AT5G60200.1 | 66.667 | 57 | 19 | 0 | 43 | 99 | 52 | 108 | 1.10e-23 | 93.6 |
| Msa0235270 | AT5G02460.1 | 68.421 | 57 | 18 | 0 | 43 | 99 | 92 | 148 | 1.83e-23 | 95.1 |
| Msa0235270 | AT3G45610.1 | 52.778 | 72 | 34 | 0 | 28 | 99 | 22 | 93 | 2.12e-23 | 92.4 |
| Msa0235270 | AT4G24060.1 | 63.158 | 57 | 21 | 0 | 43 | 99 | 50 | 106 | 2.51e-23 | 94.0 |
| Msa0235270 | AT1G47655.1 | 64.815 | 54 | 19 | 0 | 41 | 94 | 24 | 77 | 3.22e-23 | 91.3 |
| Msa0235270 | AT1G28310.1 | 68.519 | 54 | 17 | 0 | 46 | 99 | 27 | 80 | 4.69e-23 | 92.8 |
| Msa0235270 | AT3G61850.2 | 57.812 | 64 | 27 | 0 | 36 | 99 | 52 | 115 | 4.71e-23 | 92.4 |
| Msa0235270 | AT3G61850.3 | 57.812 | 64 | 27 | 0 | 36 | 99 | 52 | 115 | 4.71e-23 | 92.4 |
| Msa0235270 | AT3G52440.1 | 66.102 | 59 | 19 | 1 | 44 | 101 | 22 | 80 | 4.72e-23 | 91.7 |
| Msa0235270 | AT3G52440.2 | 66.102 | 59 | 19 | 1 | 44 | 101 | 41 | 99 | 4.89e-23 | 92.0 |
| Msa0235270 | AT3G61850.1 | 57.812 | 64 | 27 | 0 | 36 | 99 | 64 | 127 | 5.55e-23 | 92.4 |
| Msa0235270 | AT1G21340.1 | 47.872 | 94 | 40 | 2 | 48 | 138 | 40 | 127 | 6.57e-23 | 91.7 |
| Msa0235270 | AT1G28310.2 | 68.519 | 54 | 17 | 0 | 46 | 99 | 51 | 104 | 6.88e-23 | 92.8 |
| Msa0235270 | AT3G61850.5 | 57.812 | 64 | 27 | 0 | 36 | 99 | 52 | 115 | 7.42e-23 | 92.4 |
| Msa0235270 | AT3G61850.4 | 57.812 | 64 | 27 | 0 | 36 | 99 | 64 | 127 | 8.01e-23 | 92.4 |
| Msa0235270 | AT1G64620.1 | 65.385 | 52 | 18 | 0 | 43 | 94 | 46 | 97 | 1.13e-22 | 92.4 |
| Msa0235270 | AT2G28510.1 | 71.154 | 52 | 15 | 0 | 48 | 99 | 50 | 101 | 1.19e-22 | 91.3 |
| Msa0235270 | AT4G00940.1 | 71.154 | 52 | 15 | 0 | 48 | 99 | 70 | 121 | 1.75e-22 | 91.3 |
| Msa0235270 | AT4G00940.3 | 71.154 | 52 | 15 | 0 | 48 | 99 | 70 | 121 | 1.75e-22 | 91.3 |
| Msa0235270 | AT4G00940.2 | 71.154 | 52 | 15 | 0 | 48 | 99 | 70 | 121 | 1.75e-22 | 91.3 |
| Msa0235270 | AT5G62940.1 | 69.388 | 49 | 15 | 0 | 48 | 96 | 75 | 123 | 1.33e-21 | 89.7 |
| Msa0235270 | AT4G21050.1 | 67.308 | 52 | 17 | 0 | 48 | 99 | 26 | 77 | 2.36e-21 | 86.3 |
| Msa0235270 | AT2G46590.1 | 68.750 | 48 | 15 | 0 | 46 | 93 | 68 | 115 | 6.47e-21 | 87.8 |
| Msa0235270 | AT2G46590.2 | 68.750 | 48 | 15 | 0 | 46 | 93 | 80 | 127 | 6.81e-21 | 87.8 |
| Msa0235270 | AT4G21040.1 | 63.462 | 52 | 19 | 0 | 48 | 99 | 27 | 78 | 3.48e-19 | 81.3 |
| Msa0235270 | AT4G21080.1 | 61.538 | 52 | 20 | 0 | 48 | 99 | 27 | 78 | 2.52e-18 | 79.3 |
| Msa0235270 | AT4G21030.1 | 45.588 | 68 | 37 | 0 | 48 | 115 | 23 | 90 | 1.65e-13 | 65.5 |
Find 45 sgRNAs with CRISPR-Local
Find 51 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACAAGGGATTAAGCTATT+TGG | 0.296201 | 2_2:-8094704 | Msa0235270:CDS |
| GGTCTTCCTCCGCCGCTTGC+CGG | 0.325640 | 2_2:+8094304 | None:intergenic |
| GCTTCATAGACACAACTTTC+CGG | 0.327262 | 2_2:+8094407 | None:intergenic |
| GTAAGAGCTGTCAAAGATAC+TGG | 0.350596 | 2_2:-8094514 | Msa0235270:CDS |
| ATGTCCAAGATGCAAGAGTA+TGG | 0.357770 | 2_2:-8094591 | Msa0235270:CDS |
| GATGATGGCCATAACTACTT+AGG | 0.390058 | 2_2:-8094374 | Msa0235270:CDS |
| CGGGGCCCTCCGTAACGTTC+CGG | 0.411302 | 2_2:-8094483 | Msa0235270:CDS |
| ATCCTCGTGACCGGGCGGCT+TGG | 0.424026 | 2_2:+8094439 | None:intergenic |
| GTTTCCATACTCTTGCATCT+TGG | 0.436933 | 2_2:+8094587 | None:intergenic |
| AAAGATACTGGACGGCTGGC+GGG | 0.444950 | 2_2:-8094502 | Msa0235270:CDS |
| GCTCTAACCCTAAGTAGTTA+TGG | 0.448424 | 2_2:+8094366 | None:intergenic |
| CGTAACGTTCCGGTTGGTGC+TGG | 0.452777 | 2_2:-8094473 | Msa0235270:CDS |
| TTCCGCCGACCAGCACCAAC+CGG | 0.465056 | 2_2:+8094464 | None:intergenic |
| ATGATGGCCATAACTACTTA+GGG | 0.502994 | 2_2:-8094373 | Msa0235270:CDS |
| TGAACCGCTATCCTCGTGAC+CGG | 0.509343 | 2_2:+8094430 | None:intergenic |
| CAAAGATACTGGACGGCTGG+CGG | 0.511046 | 2_2:-8094503 | Msa0235270:CDS |
| TTCCGGTTGGTGCTGGTCGG+CGG | 0.523760 | 2_2:-8094466 | Msa0235270:CDS |
| AAAAGAAAGTGAAGATCAAA+CGG | 0.525439 | 2_2:-8094642 | Msa0235270:CDS |
| CAGCACCAACCGGAACGTTA+CGG | 0.531259 | 2_2:+8094474 | None:intergenic |
| TTGCATGAGGAATTAAAAGA+AGG | 0.537463 | 2_2:-8094668 | Msa0235270:CDS |
| TGTCAAAGATACTGGACGGC+TGG | 0.537711 | 2_2:-8094506 | Msa0235270:CDS |
| AGAAAAGGTGAAGAGATACA+AGG | 0.544735 | 2_2:-8094719 | Msa0235270:CDS |
| ATACTCTTGCATCTTGGACA+TGG | 0.546078 | 2_2:+8094593 | None:intergenic |
| TCACGAGGATAGCGGTTCAC+CGG | 0.553799 | 2_2:-8094426 | Msa0235270:CDS |
| AGCCAAGCCGCCCGGTCACG+AGG | 0.555102 | 2_2:-8094441 | Msa0235270:CDS |
| CGGCGGAAAGCCAAGCCGCC+CGG | 0.555195 | 2_2:-8094449 | Msa0235270:CDS |
| GCCCTCCGTAACGTTCCGGT+TGG | 0.558409 | 2_2:-8094479 | Msa0235270:CDS |
| ACGTTCCGGTTGGTGCTGGT+CGG | 0.560179 | 2_2:-8094469 | Msa0235270:CDS |
| GAACCGCTATCCTCGTGACC+GGG | 0.561130 | 2_2:+8094431 | None:intergenic |
| AAGCGGCGGAGGAAGACCTC+AGG | 0.572311 | 2_2:-8094299 | Msa0235270:CDS |
| AAGATACTGGACGGCTGGCG+GGG | 0.577667 | 2_2:-8094501 | Msa0235270:CDS |
| AATATGGCTGAAGTGAGAAA+AGG | 0.587615 | 2_2:-8094734 | Msa0235270:CDS |
| GAAAAGGTGAAGAGATACAA+GGG | 0.603099 | 2_2:-8094718 | Msa0235270:CDS |
| CACAACAATAAAATTGCATG+AGG | 0.620119 | 2_2:-8094681 | Msa0235270:CDS |
| GAAGCTGCTAGTTCTGATGA+TGG | 0.628789 | 2_2:-8094389 | Msa0235270:CDS |
| CGGCGGAGGAAGACCTCAGG+TGG | 0.630380 | 2_2:-8094296 | Msa0235270:CDS |
| TGCTAATGAATAACCACCTG+AGG | 0.631649 | 2_2:+8094283 | None:intergenic |
| ACCAACCGGAACGTTACGGA+GGG | 0.632472 | 2_2:+8094478 | None:intergenic |
| GAGCTGTCAAAGATACTGGA+CGG | 0.644495 | 2_2:-8094510 | Msa0235270:CDS |
| CACCAACCGGAACGTTACGG+AGG | 0.647589 | 2_2:+8094477 | None:intergenic |
| TCCCGAAAATCACTCTGAGG+AGG | 0.648141 | 2_2:+8094335 | None:intergenic |
| CCGCCCGGTCACGAGGATAG+CGG | 0.672452 | 2_2:-8094434 | Msa0235270:CDS |
| ACTTCCCGAAAATCACTCTG+AGG | 0.686816 | 2_2:+8094332 | None:intergenic |
| AGAAAGTGAAGATCAAACGG+TGG | 0.696077 | 2_2:-8094639 | Msa0235270:CDS |
| CCGCTATCCTCGTGACCGGG+CGG | 0.737412 | 2_2:+8094434 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAAAGAAAGTGAAGATCAAA+CGG | - | chr2_2:8094360-8094379 | Msa0235270:CDS | 25.0% |
| ATACAAGGGATTAAGCTATT+TGG | - | chr2_2:8094298-8094317 | Msa0235270:CDS | 30.0% | |
| CACAACAATAAAATTGCATG+AGG | - | chr2_2:8094321-8094340 | Msa0235270:CDS | 30.0% | |
| TTGCATGAGGAATTAAAAGA+AGG | - | chr2_2:8094334-8094353 | Msa0235270:CDS | 30.0% | |
| AGAAAAGGTGAAGAGATACA+AGG | - | chr2_2:8094283-8094302 | Msa0235270:CDS | 35.0% | |
| GAAAAGGTGAAGAGATACAA+GGG | - | chr2_2:8094284-8094303 | Msa0235270:CDS | 35.0% | |
| CAGCTCTTACAAAAATGTCT+TGG | + | chr2_2:8094478-8094497 | None:intergenic | 35.0% | |
| ATGATGGCCATAACTACTTA+GGG | - | chr2_2:8094629-8094648 | Msa0235270:CDS | 35.0% | |
| !!! | GATTTTCGGGAAGTATTTTC+CGG | - | chr2_2:8094679-8094698 | Msa0235270:CDS | 35.0% |
| AGAAAGTGAAGATCAAACGG+TGG | - | chr2_2:8094363-8094382 | Msa0235270:CDS | 40.0% | |
| ATACTCTTGCATCTTGGACA+TGG | + | chr2_2:8094412-8094431 | None:intergenic | 40.0% | |
| ATGTCCAAGATGCAAGAGTA+TGG | - | chr2_2:8094411-8094430 | Msa0235270:CDS | 40.0% | |
| GTTTCCATACTCTTGCATCT+TGG | + | chr2_2:8094418-8094437 | None:intergenic | 40.0% | |
| GTAAGAGCTGTCAAAGATAC+TGG | - | chr2_2:8094488-8094507 | Msa0235270:CDS | 40.0% | |
| GCTTCATAGACACAACTTTC+CGG | + | chr2_2:8094598-8094617 | None:intergenic | 40.0% | |
| ! | GATGATGGCCATAACTACTT+AGG | - | chr2_2:8094628-8094647 | Msa0235270:CDS | 40.0% |
| GCTCTAACCCTAAGTAGTTA+TGG | + | chr2_2:8094639-8094658 | None:intergenic | 40.0% | |
| TGCTAATGAATAACCACCTG+AGG | + | chr2_2:8094722-8094741 | None:intergenic | 40.0% | |
| GAGCTGTCAAAGATACTGGA+CGG | - | chr2_2:8094492-8094511 | Msa0235270:CDS | 45.0% | |
| !! | GAAGCTGCTAGTTCTGATGA+TGG | - | chr2_2:8094613-8094632 | Msa0235270:CDS | 45.0% |
| ! | TGCCTCCTCAGAGTGATTTT+CGG | - | chr2_2:8094665-8094684 | Msa0235270:CDS | 45.0% |
| ACTTCCCGAAAATCACTCTG+AGG | + | chr2_2:8094673-8094692 | None:intergenic | 45.0% | |
| TGTCAAAGATACTGGACGGC+TGG | - | chr2_2:8094496-8094515 | Msa0235270:CDS | 50.0% | |
| ! | GCCTCCTCAGAGTGATTTTC+GGG | - | chr2_2:8094666-8094685 | Msa0235270:CDS | 50.0% |
| ! | TCCCGAAAATCACTCTGAGG+AGG | + | chr2_2:8094670-8094689 | None:intergenic | 50.0% |
| !!! | GGGAAGTATTTTCCGGCAAG+CGG | - | chr2_2:8094686-8094705 | Msa0235270:CDS | 50.0% |
| ! | AAGTATTTTCCGGCAAGCGG+CGG | - | chr2_2:8094689-8094708 | Msa0235270:CDS | 50.0% |
| CAAAGATACTGGACGGCTGG+CGG | - | chr2_2:8094499-8094518 | Msa0235270:CDS | 55.0% | |
| AAAGATACTGGACGGCTGGC+GGG | - | chr2_2:8094500-8094519 | Msa0235270:CDS | 55.0% | |
| ACCAACCGGAACGTTACGGA+GGG | + | chr2_2:8094527-8094546 | None:intergenic | 55.0% | |
| CAGCACCAACCGGAACGTTA+CGG | + | chr2_2:8094531-8094550 | None:intergenic | 55.0% | |
| TGAACCGCTATCCTCGTGAC+CGG | + | chr2_2:8094575-8094594 | None:intergenic | 55.0% | |
| ! | TCACGAGGATAGCGGTTCAC+CGG | - | chr2_2:8094576-8094595 | Msa0235270:CDS | 55.0% |
| AAGATACTGGACGGCTGGCG+GGG | - | chr2_2:8094501-8094520 | Msa0235270:CDS | 60.0% | |
| CACCAACCGGAACGTTACGG+AGG | + | chr2_2:8094528-8094547 | None:intergenic | 60.0% | |
| ! | CGTAACGTTCCGGTTGGTGC+TGG | - | chr2_2:8094529-8094548 | Msa0235270:CDS | 60.0% |
| !! | ACGTTCCGGTTGGTGCTGGT+CGG | - | chr2_2:8094533-8094552 | Msa0235270:CDS | 60.0% |
| GAACCGCTATCCTCGTGACC+GGG | + | chr2_2:8094574-8094593 | None:intergenic | 60.0% | |
| ! | TATTTTCCGGCAAGCGGCGG+AGG | - | chr2_2:8094692-8094711 | Msa0235270:CDS | 60.0% |
| GCCCTCCGTAACGTTCCGGT+TGG | - | chr2_2:8094523-8094542 | Msa0235270:CDS | 65.0% | |
| !! | TTCCGGTTGGTGCTGGTCGG+CGG | - | chr2_2:8094536-8094555 | Msa0235270:CDS | 65.0% |
| TTCCGCCGACCAGCACCAAC+CGG | + | chr2_2:8094541-8094560 | None:intergenic | 65.0% | |
| AAGCGGCGGAGGAAGACCTC+AGG | - | chr2_2:8094703-8094722 | Msa0235270:CDS | 65.0% | |
| CGGGGCCCTCCGTAACGTTC+CGG | - | chr2_2:8094519-8094538 | Msa0235270:CDS | 70.0% | |
| ATCCTCGTGACCGGGCGGCT+TGG | + | chr2_2:8094566-8094585 | None:intergenic | 70.0% | |
| CCGCTATCCTCGTGACCGGG+CGG | + | chr2_2:8094571-8094590 | None:intergenic | 70.0% | |
| CCGCCCGGTCACGAGGATAG+CGG | - | chr2_2:8094568-8094587 | Msa0235270:CDS | 70.0% | |
| GGTCTTCCTCCGCCGCTTGC+CGG | + | chr2_2:8094701-8094720 | None:intergenic | 70.0% | |
| CGGCGGAGGAAGACCTCAGG+TGG | - | chr2_2:8094706-8094725 | Msa0235270:CDS | 70.0% | |
| CGGCGGAAAGCCAAGCCGCC+CGG | - | chr2_2:8094553-8094572 | Msa0235270:CDS | 75.0% | |
| AGCCAAGCCGCCCGGTCACG+AGG | - | chr2_2:8094561-8094580 | Msa0235270:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 8094271 | 8094753 | 8094271 | ID=Msa0235270;Name=Msa0235270 |
| chr2_2 | mRNA | 8094271 | 8094753 | 8094271 | ID=Msa0235270-mRNA-1;Parent=Msa0235270;Name=Msa0235270-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|160 |
| chr2_2 | exon | 8094271 | 8094753 | 8094271 | ID=Msa0235270-mRNA-1:exon:3525;Parent=Msa0235270-mRNA-1 |
| chr2_2 | CDS | 8094271 | 8094753 | 8094271 | ID=Msa0235270-mRNA-1:cds;Parent=Msa0235270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
