AlfalfaGEDB | Msa0235270

M. sativa cultivar zhongmu-4 / Msa0235270

KEGG: -
GO: GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0010154 GO:0010214 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902455 GO:1902679 GO:1903506 GO:1903507 GO:2000036 GO:2000112 GO:2000113 GO:2001141
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0235270	XP_013462554.1	98.137	161	2	1	1	160	1	161	3.57e-112	325

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0235270	sp\|P68350\|DOF15_ARATH	62.609	115	23	1	8	102	4	118	7.73e-46	150

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0235270	A0A072V3I5	98.137	161	2	1	1	160	1	161	1.71e-112	325

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TFs/TRs:

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Gene ID	Type	Classification
Msa0235270	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0235270	MtrunA17_Chr2g0283811	98.137	161	2	1	1	160	1	161	3.29e-116	325
Msa0235270	MtrunA17_Chr6g0453321	70.370	81	23	1	19	99	110	189	1.58e-36	131
Msa0235270	MtrunA17_Chr4g0042481	67.500	80	26	0	20	99	96	175	1.56e-35	128
Msa0235270	MtrunA17_Chr7g0217581	71.053	76	21	1	24	99	211	285	1.24e-34	127
Msa0235270	MtrunA17_Chr8g0355261	67.105	76	24	1	25	99	96	171	4.25e-34	124
Msa0235270	MtrunA17_Chr7g0254161	71.233	73	20	1	28	99	82	154	6.23e-33	120
Msa0235270	MtrunA17_Chr6g0460731	73.239	71	18	1	30	99	79	149	6.45e-32	117
Msa0235270	MtrunA17_Chr5g0417551	60.714	84	31	1	18	99	97	180	2.71e-31	115
Msa0235270	MtrunA17_Chr3g0092111	57.778	90	29	1	19	99	100	189	5.22e-31	115
Msa0235270	MtrunA17_Chr5g0417601	70.423	71	18	1	32	99	123	193	1.59e-30	113

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0235270	AT1G29160.1	62.609	115	23	1	8	102	4	118	7.86e-47	150
Msa0235270	AT2G34140.1	63.964	111	24	1	8	102	4	114	1.43e-45	147
Msa0235270	AT5G62430.1	58.416	101	28	2	12	99	8	107	2.26e-35	125
Msa0235270	AT3G47500.1	66.250	80	27	0	20	99	84	163	5.84e-35	126
Msa0235270	AT5G39660.3	82.540	63	11	0	40	102	132	194	1.97e-34	125
Msa0235270	AT5G39660.1	82.540	63	11	0	40	102	132	194	1.97e-34	125
Msa0235270	AT5G39660.2	82.540	63	11	0	40	102	132	194	1.97e-34	125
Msa0235270	AT1G26790.1	56.311	103	38	1	23	125	88	183	4.57e-34	123
Msa0235270	AT1G69570.1	60.440	91	29	1	34	124	120	203	6.79e-33	120
Msa0235270	AT5G60850.1	57.692	78	33	0	46	123	51	128	8.75e-27	102

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Find 45 sgRNAs with CRISPR-Local

Find 51 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAGTGAAGATCAAA+CGG	0.525439	2_2:-8094642	Msa0235270:CDS
AAAGATACTGGACGGCTGGC+GGG	0.444950	2_2:-8094502	Msa0235270:CDS
AAGATACTGGACGGCTGGCG+GGG	0.577667	2_2:-8094501	Msa0235270:CDS
AAGCGGCGGAGGAAGACCTC+AGG	0.572311	2_2:-8094299	Msa0235270:CDS
AATATGGCTGAAGTGAGAAA+AGG	0.587615	2_2:-8094734	Msa0235270:CDS
ACCAACCGGAACGTTACGGA+GGG	0.632472	2_2:+8094478	None:intergenic
ACGTTCCGGTTGGTGCTGGT+CGG	0.560179	2_2:-8094469	Msa0235270:CDS
ACTTCCCGAAAATCACTCTG+AGG	0.686816	2_2:+8094332	None:intergenic
AGAAAAGGTGAAGAGATACA+AGG	0.544735	2_2:-8094719	Msa0235270:CDS
AGAAAGTGAAGATCAAACGG+TGG	0.696077	2_2:-8094639	Msa0235270:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATACAAGGGATTAAGCTATT+TGG	-	chr2_2:8094298-8094317	Msa0235270:CDS	30.0%
CACAACAATAAAATTGCATG+AGG	-	chr2_2:8094321-8094340	Msa0235270:CDS	30.0%
TTGCATGAGGAATTAAAAGA+AGG	-	chr2_2:8094334-8094353	Msa0235270:CDS	30.0%
AGAAAAGGTGAAGAGATACA+AGG	-	chr2_2:8094283-8094302	Msa0235270:CDS	35.0%
GAAAAGGTGAAGAGATACAA+GGG	-	chr2_2:8094284-8094303	Msa0235270:CDS	35.0%
CAGCTCTTACAAAAATGTCT+TGG	+	chr2_2:8094478-8094497	None:intergenic	35.0%
ATGATGGCCATAACTACTTA+GGG	-	chr2_2:8094629-8094648	Msa0235270:CDS	35.0%
AGAAAGTGAAGATCAAACGG+TGG	-	chr2_2:8094363-8094382	Msa0235270:CDS	40.0%
ATACTCTTGCATCTTGGACA+TGG	+	chr2_2:8094412-8094431	None:intergenic	40.0%
ATGTCCAAGATGCAAGAGTA+TGG	-	chr2_2:8094411-8094430	Msa0235270:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	8094271	8094753	8094271	ID=Msa0235270;Name=Msa0235270
chr2_2	mRNA	8094271	8094753	8094271	ID=Msa0235270-mRNA-1;Parent=Msa0235270;Name=Msa0235270-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|160
chr2_2	exon	8094271	8094753	8094271	ID=Msa0235270-mRNA-1:exon:3525;Parent=Msa0235270-mRNA-1
chr2_2	CDS	8094271	8094753	8094271	ID=Msa0235270-mRNA-1:cds;Parent=Msa0235270-mRNA-1

Gene Sequence

>Msa0235270

ATGGCTGAAGTGAGAAAAGGTGAAGAGATACAAGGGATTAAGCTATTTGGCACAACAATAAAATTGCATGAGGAATTAAAAGAAGGTGAAAAAGAAAGTGAAGATCAAACGGTGGAGAAGAAGATAGAAAAGATCATACCATGTCCAAGATGCAAGAGTATGGAAACAAAATTTTGTTATTTCAATAATTACAACGTTAATCAACCAAGACATTTTTGTAAGAGCTGTCAAAGATACTGGACGGCTGGCGGGGCCCTCCGTAACGTTCCGGTTGGTGCTGGTCGGCGGAAAGCCAAGCCGCCCGGTCACGAGGATAGCGGTTCACCGGAAAGTTGTGTCTATGAAGCTGCTAGTTCTGATGATGGCCATAACTACTTAGGGTTAGAGCAATTTATGCCTCCTCAGAGTGATTTTCGGGAAGTATTTTCCGGCAAGCGGCGGAGGAAGACCTCAGGTGGTTATTCATTAGCATCCTCCTTGTGA

Protein sequence

>Msa0235270

MAEVRKGEEIQGIKLFGTTIKLHEELKEGEKESEDQTVEKKIEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKSCQRYWTAGGALRNVPVGAGRRKAKPPGHEDSGSPESCVYEAASSDDGHNYLGLEQFMPPQSDFREVFSGKRRRKTSGGYSLASSL*