AlfalfaGEDB | Msa0235310

M. sativa cultivar zhongmu-4 / Msa0235310

KEGG: -
GO: -
PFAM: PF13837.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0235310	KEH36594.1	96.508	315	11	0	1	315	1	315	0.0	633

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0235310	sp\|Q9LJG8\|ASIL2_ARATH	33.333	345	157	10	19	305	80	409	3.22e-47	167

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0235310	A0A072V3I8	96.508	315	11	0	1	315	1	315	0.0	633

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0235310	TF	Trihelix

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0235310	MtrunA17_Chr2g0283871	96.474	312	11	0	1	312	1	312	0.0	627
Msa0235310	MtrunA17_Chr4g0041151	49.686	318	107	7	11	311	19	300	1.29e-79	244
Msa0235310	MtrunA17_Chr8g0344681	40.728	302	142	10	19	309	64	339	5.14e-53	177
Msa0235310	MtrunA17_Chr2g0325841	32.609	368	164	9	11	299	34	396	7.01e-33	128
Msa0235310	MtrunA17_Chr1g0179531	37.624	101	57	3	23	122	133	228	7.25e-17	80.9
Msa0235310	MtrunA17_Chr6g0485241	36.170	94	55	2	23	115	130	219	2.48e-16	79.0
Msa0235310	MtrunA17_Chr1g0164461	36.735	98	55	2	18	115	33	123	4.04e-14	69.7
Msa0235310	MtrunA17_Chr3g0082261	37.755	98	54	2	18	115	33	123	8.35e-14	70.9
Msa0235310	MtrunA17_Chr2g0331931	36.752	117	67	3	14	128	263	374	1.68e-12	67.8
Msa0235310	MtrunA17_Chr4g0066271	31.915	94	62	2	22	114	116	208	3.34e-12	66.6

Showing 1 to 10 of 10 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0235310	AT3G58630.2	42.560	336	132	9	3	313	2	301	1.45e-66	211
Msa0235310	AT3G58630.1	42.560	336	132	9	3	313	2	301	2.38e-66	211
Msa0235310	AT3G14180.1	33.333	345	157	10	19	305	80	409	3.28e-48	167
Msa0235310	AT3G11100.1	37.162	296	120	7	19	314	18	247	9.75e-46	155
Msa0235310	AT5G05550.3	37.838	296	113	8	19	314	20	244	5.36e-45	154
Msa0235310	AT5G05550.1	37.838	296	113	8	19	314	20	244	8.03e-45	153
Msa0235310	AT5G05550.2	39.100	289	105	9	19	307	20	237	6.63e-44	151
Msa0235310	AT1G54060.1	51.020	98	44	2	19	116	90	183	1.80e-21	94.0
Msa0235310	AT3G54390.1	27.124	306	169	12	5	303	16	274	7.67e-20	88.2
Msa0235310	AT3G10030.1	35.433	127	74	3	23	145	161	283	8.25e-20	90.1

Showing 1 to 10 of 14 entries

Previous1 2Next

Find 123 sgRNAs with CRISPR-Local

Find 405 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATCGTGGTGAAAATC+CGG	0.442007	2_2:+8167846	None:intergenic
AACCCTAATTTCTCCGATGC+CGG	0.432438	2_2:-8167865	Msa0235310:exon
AACTGTACTTAAGCCTGATT+CGG	0.376453	2_2:-8162725	Msa0235310:three_prime_UTR
AAGATATAGAAAAGGTTAAA+CGG	0.453825	2_2:+8167943	None:intergenic
AAGGGAGAGAAGGGATGAAG+AGG	0.497380	2_2:-8167128	Msa0235310:CDS
AAGGGGATAAAGGGAGAGAA+GGG	0.448917	2_2:-8167137	Msa0235310:CDS
AAGTAGAGGAAGAGGAAGGG+AGG	0.369131	2_2:-8167176	Msa0235310:CDS
AAGTGGATGAAGGGGATAAA+GGG	0.379670	2_2:-8167146	Msa0235310:CDS
AATCCGGCATCGGAGAAATT+AGG	0.223362	2_2:+8167862	None:intergenic
AATGGTTCGGTGATGGTGAT+CGG	0.543756	2_2:-8162905	Msa0235310:three_prime_UTR

Showing 1 to 10 of 123 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GAGAGAATGAGAAGAAATTA+GGG	+	chr2_2:8162753-8162772	None:intergenic	30.0%
AGAGAGAATGAGAAGAAATT+AGG	+	chr2_2:8162754-8162773	None:intergenic	30.0%
AGTATAAGGTTGAAAAAGCT+AGG	-	chr2_2:8163059-8163078	Msa0235310:intron	30.0%
GTATAAGGTTGAAAAAGCTA+GGG	-	chr2_2:8163060-8163079	Msa0235310:intron	30.0%
ACATCTAACCGTTCAAAAAA+AGG	+	chr2_2:8163121-8163140	None:intergenic	30.0%
ATCAAATCACAAGCTAAAAG+GGG	+	chr2_2:8163790-8163809	None:intergenic	30.0%
AAAACAAAAACTGAGCAATG+CGG	+	chr2_2:8163829-8163848	None:intergenic	30.0%
GTTATACTGTTATGCATGAT+AGG	-	chr2_2:8163871-8163890	Msa0235310:intron	30.0%
AGAACTAAAGGTTGTTGTAT+TGG	+	chr2_2:8164244-8164263	None:intergenic	30.0%
TTGTTCTTGATTGACATTGA+TGG	-	chr2_2:8164359-8164378	Msa0235310:intron	30.0%

Showing 1 to 10 of 405 entries

Previous1 2 3 4 5…41Next

Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	8162658	8168016	8162658	ID=Msa0235310;Name=Msa0235310
chr2_2	mRNA	8162658	8168016	8162658	ID=Msa0235310-mRNA-1;Parent=Msa0235310;Name=Msa0235310-mRNA-1;_AED=0.03;_eAED=0.03;_QI=145\|0\|0.5\|1\|0\|1\|2\|297\|315
chr2_2	exon	8162658	8162954	8162658	ID=Msa0235310-mRNA-1:exon:3529;Parent=Msa0235310-mRNA-1
chr2_2	exon	8166924	8168016	8166924	ID=Msa0235310-mRNA-1:exon:3528;Parent=Msa0235310-mRNA-1
chr2_2	five_prime_UTR	8167872	8168016	8167872	ID=Msa0235310-mRNA-1:five_prime_utr;Parent=Msa0235310-mRNA-1
chr2_2	CDS	8166924	8167871	8166924	ID=Msa0235310-mRNA-1:cds;Parent=Msa0235310-mRNA-1
chr2_2	three_prime_UTR	8162658	8162954	8162658	ID=Msa0235310-mRNA-1:three_prime_utr;Parent=Msa0235310-mRNA-1

Gene Sequence

>Msa0235310

ATGCCGGATTTTCACCACGATTCTTTCACACCACCGTCACGCACCGTCCCCGTTCGCGAGGATTGTTGGTCAGAAGAAGCTTCTTCCACTCTCGTCGATGCATGGGGTCGTCGGTATCTTGAACTCAACCGTGGTAATCTTCGTCAGAAAGATTGGCAAGATGTTGCTGATACTGTTAACGCTCTTCATGGTCATACCAAGAAAACTCATCGCACAGATGTTCAGTGTAAGAATCGAATCGATACGATTAAGAAAAAGTATAAGGTTGAAAAAGCTAGGGTTACGGAATCTAATGGTGTTTTGAATTCTAATTGGCCTTTTTTTGAACGGTTAGATGTTTTGATTGGACCTAATTTCAGTGCTAAGAAGCTATCAATTTCTTCACCGGTGGCGGTGACACCGTCGCCGCCGGTGGCTCTTCCGTTGATTCCTCATCGGAAATTTGCTAATTCTGGTGGTTATTCATCACCTGCAATTGCGGTACATTCGACCTCAGTGGCGTTACCGCAGAAGAGGAATTATTCTGCTGTGGCTGCGGCTACGGCTACGGTGATGGATGATGGGTATTTTAGGAGGAATTATTCTGCGGTAGCTGCAGCCGCTGCTGCTGCGGAAGCTGATGAGGATGATGATGAGGATGATGAGGTGGAGGAAGTTGAGGAGGAAGAGGTGGAAGTAGAGGAAGAGGAAGGGAGGGGGAGTGAAGTGGATGAAGGGGATAAAGGGAGAGAAGGGATGAAGAGGTTGGCGAAGGCGATAGAGAGTTTTGGTGAAATGTATGAGAGAGTGGAAGAACAGAAACTGAGGCAGATGGTGGATTTGGAGAAACAAAGGATGCAGTTTGCTAAAGATCTTGAAGTGCAGAGGATGCAGATGTTTATGGATACTCAAGTTCAGCTGGAGAGAATTAAACGTGGAAAACCATCTGGGTCTAATGGTGAGATATAA

Protein sequence

>Msa0235310

MPDFHHDSFTPPSRTVPVREDCWSEEASSTLVDAWGRRYLELNRGNLRQKDWQDVADTVNALHGHTKKTHRTDVQCKNRIDTIKKKYKVEKARVTESNGVLNSNWPFFERLDVLIGPNFSAKKLSISSPVAVTPSPPVALPLIPHRKFANSGGYSSPAIAVHSTSVALPQKRNYSAVAAATATVMDDGYFRRNYSAVAAAAAAAEADEDDDEDDEVEEVEEEEVEVEEEEGRGSEVDEGDKGREGMKRLAKAIESFGEMYERVEEQKLRQMVDLEKQRMQFAKDLEVQRMQMFMDTQVQLERIKRGKPSGSNGEI*