Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235400 | XP_013462567.1 | 92.593 | 243 | 18 | 0 | 1 | 243 | 1 | 243 | 2.06e-165 | 466 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235400 | sp|Q9FJK3|AGL80_ARATH | 44.516 | 155 | 85 | 1 | 1 | 155 | 1 | 154 | 9.58e-31 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235400 | G7ZXK2 | 92.593 | 243 | 18 | 0 | 1 | 243 | 1 | 243 | 9.85e-166 | 466 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0235400 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235400 | MtrunA17_Chr2g0283941 | 92.593 | 243 | 18 | 0 | 1 | 243 | 1 | 243 | 1.90e-169 | 466 |
| Msa0235400 | MtrunA17_Chr3g0107381 | 47.486 | 179 | 91 | 2 | 1 | 177 | 1 | 178 | 2.24e-49 | 161 |
| Msa0235400 | MtrunA17_Chr3g0106421 | 41.379 | 203 | 110 | 3 | 29 | 227 | 1 | 198 | 3.39e-46 | 153 |
| Msa0235400 | MtrunA17_Chr3g0107461 | 43.590 | 156 | 88 | 0 | 5 | 160 | 5 | 160 | 3.70e-41 | 138 |
| Msa0235400 | MtrunA17_Chr8g0351751 | 46.250 | 160 | 84 | 1 | 1 | 158 | 1 | 160 | 5.43e-40 | 138 |
| Msa0235400 | MtrunA17_Chr5g0432691 | 37.342 | 158 | 98 | 1 | 1 | 158 | 1 | 157 | 2.57e-37 | 128 |
| Msa0235400 | MtrunA17_Chr3g0105791 | 43.972 | 141 | 79 | 0 | 29 | 169 | 1 | 141 | 7.84e-37 | 127 |
| Msa0235400 | MtrunA17_Chr4g0014321 | 37.500 | 200 | 111 | 2 | 1 | 200 | 1 | 186 | 7.99e-37 | 129 |
| Msa0235400 | MtrunA17_Chr3g0110131 | 47.742 | 155 | 80 | 1 | 1 | 155 | 1 | 154 | 1.57e-36 | 129 |
| Msa0235400 | MtrunA17_Chr4g0031421 | 43.885 | 139 | 78 | 0 | 29 | 167 | 1 | 139 | 2.80e-36 | 125 |
| Msa0235400 | MtrunA17_Chr4g0014031 | 42.949 | 156 | 89 | 0 | 1 | 156 | 1 | 156 | 5.09e-34 | 122 |
| Msa0235400 | MtrunA17_Chr4g0013041 | 35.829 | 187 | 108 | 4 | 1 | 183 | 1 | 179 | 4.19e-32 | 116 |
| Msa0235400 | MtrunA17_Chr3g0106501 | 42.963 | 135 | 77 | 0 | 29 | 163 | 1 | 135 | 9.41e-30 | 108 |
| Msa0235400 | MtrunA17_Chr2g0296861 | 39.873 | 158 | 94 | 1 | 1 | 158 | 1 | 157 | 2.95e-29 | 107 |
| Msa0235400 | MtrunA17_Chr4g0014131 | 41.358 | 162 | 95 | 0 | 1 | 162 | 1 | 162 | 3.00e-29 | 109 |
| Msa0235400 | MtrunA17_Chr3g0107331 | 39.456 | 147 | 88 | 1 | 4 | 150 | 3 | 148 | 8.54e-29 | 106 |
| Msa0235400 | MtrunA17_Chr4g0014121 | 40.252 | 159 | 95 | 0 | 1 | 159 | 29 | 187 | 3.95e-28 | 105 |
| Msa0235400 | MtrunA17_Chr1g0188681 | 39.073 | 151 | 90 | 2 | 1 | 151 | 1 | 149 | 4.10e-28 | 104 |
| Msa0235400 | MtrunA17_Chr1g0197261 | 39.490 | 157 | 91 | 3 | 1 | 156 | 1 | 154 | 7.17e-28 | 104 |
| Msa0235400 | MtrunA17_Chr5g0420351 | 37.086 | 151 | 93 | 2 | 1 | 151 | 1 | 149 | 3.99e-27 | 102 |
| Msa0235400 | MtrunA17_Chr3g0107351 | 37.671 | 146 | 90 | 1 | 5 | 150 | 4 | 148 | 4.49e-26 | 99.8 |
| Msa0235400 | MtrunA17_Chr2g0296831 | 44.444 | 117 | 65 | 0 | 1 | 117 | 1 | 117 | 1.04e-25 | 97.4 |
| Msa0235400 | MtrunA17_Chr3g0107361 | 38.356 | 146 | 89 | 1 | 5 | 150 | 4 | 148 | 2.46e-25 | 97.8 |
| Msa0235400 | MtrunA17_Chr1g0197461 | 36.129 | 155 | 97 | 2 | 4 | 158 | 3 | 155 | 1.78e-24 | 95.5 |
| Msa0235400 | MtrunA17_Chr1g0197321 | 34.615 | 156 | 101 | 1 | 1 | 156 | 1 | 155 | 1.35e-23 | 93.2 |
| Msa0235400 | MtrunA17_Chr3g0107341 | 34.667 | 150 | 97 | 1 | 5 | 154 | 4 | 152 | 2.34e-23 | 92.4 |
| Msa0235400 | MtrunA17_Chr1g0188661 | 38.365 | 159 | 96 | 2 | 1 | 159 | 1 | 157 | 2.55e-23 | 92.4 |
| Msa0235400 | MtrunA17_Chr7g0218151 | 38.365 | 159 | 96 | 2 | 1 | 159 | 1 | 157 | 9.96e-23 | 90.9 |
| Msa0235400 | MtrunA17_Chr4g0012761 | 37.107 | 159 | 98 | 2 | 1 | 159 | 1 | 157 | 2.05e-21 | 87.4 |
| Msa0235400 | MtrunA17_Chr3g0128721 | 32.051 | 156 | 95 | 2 | 4 | 159 | 7 | 151 | 4.94e-21 | 91.7 |
| Msa0235400 | MtrunA17_Chr1g0193311 | 35.256 | 156 | 99 | 2 | 1 | 156 | 1 | 154 | 4.60e-20 | 83.6 |
| Msa0235400 | MtrunA17_Chr1g0188651 | 37.013 | 154 | 93 | 3 | 1 | 154 | 1 | 150 | 4.62e-19 | 81.3 |
| Msa0235400 | MtrunA17_Chr4g0008701 | 31.973 | 147 | 96 | 2 | 4 | 150 | 7 | 149 | 5.32e-19 | 85.5 |
| Msa0235400 | MtrunA17_Chr7g0267601 | 30.612 | 147 | 98 | 2 | 4 | 150 | 7 | 149 | 1.86e-18 | 84.0 |
| Msa0235400 | MtrunA17_Chr4g0022641 | 25.641 | 156 | 106 | 2 | 1 | 154 | 1 | 148 | 8.11e-14 | 70.1 |
| Msa0235400 | MtrunA17_Chr1g0212151 | 33.333 | 108 | 64 | 4 | 3 | 103 | 2 | 108 | 3.22e-13 | 68.2 |
| Msa0235400 | MtrunA17_Chr4g0059631 | 22.477 | 218 | 147 | 5 | 3 | 208 | 2 | 209 | 1.42e-12 | 65.5 |
| Msa0235400 | MtrunA17_Chr6g0457851 | 31.481 | 108 | 66 | 4 | 3 | 103 | 12 | 118 | 6.93e-12 | 64.3 |
| Msa0235400 | MtrunA17_Chr1g0212471 | 29.114 | 158 | 97 | 6 | 3 | 154 | 2 | 150 | 1.29e-11 | 62.0 |
| Msa0235400 | MtrunA17_Chr6g0449851 | 26.415 | 159 | 101 | 5 | 3 | 154 | 2 | 151 | 2.50e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235400 | AT5G48670.1 | 44.516 | 155 | 85 | 1 | 1 | 155 | 1 | 154 | 9.74e-32 | 119 |
| Msa0235400 | AT3G05860.3 | 36.723 | 177 | 107 | 2 | 1 | 175 | 1 | 174 | 2.78e-31 | 115 |
| Msa0235400 | AT3G05860.2 | 36.723 | 177 | 107 | 2 | 1 | 175 | 1 | 174 | 3.50e-31 | 114 |
| Msa0235400 | AT3G05860.1 | 36.723 | 177 | 107 | 2 | 1 | 175 | 1 | 174 | 5.40e-31 | 115 |
| Msa0235400 | AT1G65300.1 | 36.184 | 152 | 96 | 1 | 4 | 155 | 3 | 153 | 1.98e-29 | 112 |
| Msa0235400 | AT5G27960.1 | 36.129 | 155 | 94 | 2 | 4 | 156 | 2 | 153 | 2.74e-27 | 107 |
| Msa0235400 | AT5G26650.1 | 36.601 | 153 | 96 | 1 | 4 | 156 | 2 | 153 | 3.80e-27 | 107 |
| Msa0235400 | AT1G65330.1 | 35.099 | 151 | 97 | 1 | 5 | 155 | 4 | 153 | 2.62e-25 | 100 |
| Msa0235400 | AT2G28700.1 | 30.476 | 210 | 141 | 3 | 1 | 208 | 1 | 207 | 3.10e-23 | 96.3 |
| Msa0235400 | AT1G31640.1 | 33.775 | 151 | 94 | 3 | 5 | 153 | 4 | 150 | 8.13e-22 | 94.0 |
| Msa0235400 | AT1G31630.1 | 31.973 | 147 | 98 | 2 | 5 | 151 | 4 | 148 | 1.00e-21 | 92.4 |
| Msa0235400 | AT1G22590.2 | 31.013 | 158 | 105 | 1 | 1 | 158 | 1 | 154 | 1.05e-20 | 85.9 |
| Msa0235400 | AT5G27810.1 | 40.860 | 93 | 55 | 0 | 29 | 121 | 1 | 93 | 1.19e-19 | 82.0 |
| Msa0235400 | AT2G40210.1 | 35.915 | 142 | 89 | 1 | 1 | 142 | 1 | 140 | 1.11e-18 | 84.3 |
| Msa0235400 | AT5G26580.1 | 31.210 | 157 | 89 | 3 | 1 | 155 | 1 | 140 | 2.39e-17 | 80.5 |
| Msa0235400 | AT5G06500.1 | 29.630 | 162 | 110 | 2 | 1 | 161 | 1 | 159 | 8.89e-17 | 77.4 |
| Msa0235400 | AT5G26630.1 | 33.548 | 155 | 102 | 1 | 1 | 155 | 1 | 154 | 9.19e-16 | 73.9 |
| Msa0235400 | AT5G55690.1 | 45.455 | 77 | 34 | 3 | 3 | 71 | 2 | 78 | 4.29e-15 | 73.2 |
| Msa0235400 | AT5G55690.2 | 45.455 | 77 | 34 | 3 | 3 | 71 | 2 | 78 | 4.29e-15 | 73.2 |
| Msa0235400 | AT5G58890.1 | 42.308 | 78 | 38 | 2 | 1 | 71 | 1 | 78 | 8.66e-14 | 69.7 |
| Msa0235400 | AT2G15660.1 | 28.182 | 110 | 77 | 2 | 38 | 147 | 31 | 138 | 5.52e-11 | 61.2 |
Find 63 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATACTTTAGTAATAAAT+TGG | 0.162034 | 2_2:-8218773 | None:intergenic |
| AATAGGTAATGAGGGTAATA+AGG | 0.250530 | 2_2:+8218953 | Msa0235400:CDS |
| AGGAGATATGCAAGCTAATA+TGG | 0.251220 | 2_2:+8219001 | Msa0235400:CDS |
| CTTCAGATTGTTATCTATAA+AGG | 0.253823 | 2_2:-8218853 | None:intergenic |
| TTGGATAGCAACATGAATTA+TGG | 0.300972 | 2_2:+8219047 | Msa0235400:CDS |
| TTGATCATCGTTGTCATGAC+TGG | 0.312663 | 2_2:+8218078 | None:intergenic |
| TGCCTTCCTGCTCGATGAAT+TGG | 0.322482 | 2_2:-8218127 | None:intergenic |
| GATAACACATTTCTTGTTGC+AGG | 0.342611 | 2_2:-8218615 | None:intergenic |
| GGTAATAAGGGTGATGCATC+AGG | 0.346713 | 2_2:+8218966 | Msa0235400:CDS |
| ATACGGACATAAATGGTCTT+TGG | 0.354339 | 2_2:+8219132 | Msa0235400:CDS |
| TTCAATAGGTTTGCTAAAGA+AGG | 0.384024 | 2_2:+8218503 | Msa0235400:intron |
| GCAGAAGATATGAATGGAAT+AGG | 0.400967 | 2_2:+8218936 | Msa0235400:CDS |
| AGCATTTCATGATGTTAATA+CGG | 0.402387 | 2_2:+8219115 | Msa0235400:CDS |
| GAAGCATGCGCAATAATCTT+TGG | 0.415897 | 2_2:+8218555 | Msa0235400:CDS |
| ATTGTTGTTGAAGAAACAAA+TGG | 0.421492 | 2_2:+8218725 | Msa0235400:CDS |
| ATTGAGATTTCGCTATACTT+TGG | 0.431628 | 2_2:-8218704 | None:intergenic |
| GATGTTAATACGGACATAAA+TGG | 0.434993 | 2_2:+8219125 | Msa0235400:CDS |
| GGACCTTGTGGCCAAACCTC+TGG | 0.435290 | 2_2:-8218594 | None:intergenic |
| TGGTGCTGAGGTTCAAGGTT+TGG | 0.437569 | 2_2:+8219028 | Msa0235400:CDS |
| TCTCAAGAGGAAGCTGGAAA+TGG | 0.439401 | 2_2:+8218912 | Msa0235400:CDS |
| ACAATGCTCAACCAGAGGTT+TGG | 0.442796 | 2_2:+8218583 | Msa0235400:CDS |
| ACAATCTGAAGAAAATTGAT+TGG | 0.445024 | 2_2:+8218865 | Msa0235400:CDS |
| TTCAGGCAAGTGTAGGAACT+TGG | 0.447788 | 2_2:-8218637 | None:intergenic |
| AAATACTTTAGTAATAAATT+GGG | 0.448846 | 2_2:-8218772 | None:intergenic |
| CTCATTCATGTTCACATCCT+CGG | 0.449631 | 2_2:-8218814 | None:intergenic |
| ATAGGTAATGAGGGTAATAA+GGG | 0.483783 | 2_2:+8218954 | Msa0235400:CDS |
| GGACATGGTGCTGAGGTTCA+AGG | 0.490486 | 2_2:+8219023 | Msa0235400:CDS |
| ATTACTAAAGTATTTAGTAC+TGG | 0.490777 | 2_2:+8218780 | Msa0235400:CDS |
| TCATTCATGTTCACATCCTC+GGG | 0.496079 | 2_2:-8218813 | None:intergenic |
| TGTTATCTATAAAGGCCATC+AGG | 0.507830 | 2_2:-8218845 | None:intergenic |
| TATGAATGGAATAGGTAATG+AGG | 0.512938 | 2_2:+8218944 | Msa0235400:CDS |
| ATTCAATCTCAAGAGGAAGC+TGG | 0.518424 | 2_2:+8218906 | Msa0235400:CDS |
| CAACCAGAGGTTTGGCCACA+AGG | 0.519368 | 2_2:+8218591 | Msa0235400:CDS |
| TGATCATCGTTGTCATGACT+GGG | 0.524662 | 2_2:+8218079 | None:intergenic |
| ATGAATGGAATAGGTAATGA+GGG | 0.529671 | 2_2:+8218945 | Msa0235400:CDS |
| AATGGAGCAGAAGATATGAA+TGG | 0.530854 | 2_2:+8218930 | Msa0235400:CDS |
| ATCTGAAGAAAATTGATTGG+AGG | 0.531271 | 2_2:+8218868 | Msa0235400:CDS |
| GGAGATATGCAAGCTAATAT+GGG | 0.532480 | 2_2:+8219002 | Msa0235400:CDS |
| CGTTGTCATGACTGGGAGGA+AGG | 0.534161 | 2_2:+8218086 | None:intergenic |
| GTTCGATTTCAGGCAAGTGT+AGG | 0.534412 | 2_2:-8218644 | None:intergenic |
| TTTCTTGTTGCAGGACCTTG+TGG | 0.537057 | 2_2:-8218606 | None:intergenic |
| ACATAGCCAATTCATCGAGC+AGG | 0.541522 | 2_2:+8218121 | Msa0235400:CDS |
| TGATTGGAGGTTGCAATCGA+CGG | 0.558130 | 2_2:+8218881 | Msa0235400:CDS |
| TAAGGGTGATGCATCAGGGC+TGG | 0.558559 | 2_2:+8218971 | Msa0235400:CDS |
| TGATTATCAAGATCCACCTT+GGG | 0.562050 | 2_2:+8219079 | Msa0235400:CDS |
| GTGATTATCAAGATCCACCT+TGG | 0.566592 | 2_2:+8219078 | Msa0235400:CDS |
| TAGCAACATGAATTATGGCA+TGG | 0.605759 | 2_2:+8219052 | Msa0235400:CDS |
| ATGAAATCAGCACTCTATGT+GGG | 0.608529 | 2_2:+8218529 | Msa0235400:CDS |
| AATGAAATCAGCACTCTATG+TGG | 0.614486 | 2_2:+8218528 | Msa0235400:CDS |
| GACGGAAATTCAATCTCAAG+AGG | 0.615492 | 2_2:+8218899 | Msa0235400:CDS |
| GCATCAGGGCTGGTGAATGT+AGG | 0.618345 | 2_2:+8218981 | Msa0235400:CDS |
| GAATGAGCTGAATGACCTGA+TGG | 0.627003 | 2_2:+8218830 | Msa0235400:CDS |
| TAATATGGGACATGGTGCTG+AGG | 0.638411 | 2_2:+8219016 | Msa0235400:CDS |
| ATGCAAGCTAATATGGGACA+TGG | 0.644357 | 2_2:+8219008 | Msa0235400:CDS |
| AACATCATGAAATGCTAACA+TGG | 0.649787 | 2_2:-8219108 | None:intergenic |
| GTAATAAGGGTGATGCATCA+GGG | 0.652229 | 2_2:+8218967 | Msa0235400:CDS |
| GTTGTTGAAGAAACAAATGG+AGG | 0.654091 | 2_2:+8218728 | Msa0235400:CDS |
| AGCCAATTCATCGAGCAGGA+AGG | 0.659357 | 2_2:+8218125 | Msa0235400:CDS |
| GCTAACATGGAGAAGTCCCA+AGG | 0.667501 | 2_2:-8219095 | None:intergenic |
| TACTGGACAATATCGTCCCG+AGG | 0.674998 | 2_2:+8218797 | Msa0235400:CDS |
| TGAAAACAATGCTCAACCAG+AGG | 0.685492 | 2_2:+8218578 | Msa0235400:CDS |
| AACATGGAGAAGTCCCAAGG+TGG | 0.697499 | 2_2:-8219092 | None:intergenic |
| TCATCGTTGTCATGACTGGG+AGG | 0.723014 | 2_2:+8218082 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCACTTTATTTTATTTTTT+TGG | + | chr2_2:8218412-8218431 | Msa0235400:intron | 10.0% |
| !! | AAATACTTTAGTAATAAATT+GGG | - | chr2_2:8218775-8218794 | None:intergenic | 10.0% |
| !! | TAAATACTTTAGTAATAAAT+TGG | - | chr2_2:8218776-8218795 | None:intergenic | 10.0% |
| !!! | TTCACTTTATTTTATTTTTT+TGG | + | chr2_2:8218412-8218431 | Msa0235400:intron | 10.0% |
| !! | AAATACTTTAGTAATAAATT+GGG | - | chr2_2:8218775-8218794 | None:intergenic | 10.0% |
| !! | TAAATACTTTAGTAATAAAT+TGG | - | chr2_2:8218776-8218795 | None:intergenic | 10.0% |
| !!! | AACTATATATGTTTTTCAAT+AGG | + | chr2_2:8218489-8218508 | Msa0235400:intron | 15.0% |
| !!! | AACTATATATGTTTTTCAAT+AGG | + | chr2_2:8218489-8218508 | Msa0235400:intron | 15.0% |
| !!! | TAACATCTATATAATTTGCA+TGG | - | chr2_2:8218219-8218238 | None:intergenic | 20.0% |
| !! | TACCATTAGATAATGATTAA+TGG | + | chr2_2:8218237-8218256 | Msa0235400:intron | 20.0% |
| !! | TACCATTAATCATTATCTAA+TGG | - | chr2_2:8218242-8218261 | None:intergenic | 20.0% |
| !! | TAATGGTATGAAAATGATTT+AGG | + | chr2_2:8218254-8218273 | Msa0235400:intron | 20.0% |
| !! | ATTGAATTTAAACAAACTCA+AGG | + | chr2_2:8218339-8218358 | Msa0235400:intron | 20.0% |
| !! | TTGAATTTAAACAAACTCAA+GGG | + | chr2_2:8218340-8218359 | Msa0235400:intron | 20.0% |
| !! | TGAAAAACATATATAGTTAG+AGG | - | chr2_2:8218487-8218506 | None:intergenic | 20.0% |
| !!! | ATTACTAAAGTATTTAGTAC+TGG | + | chr2_2:8218780-8218799 | Msa0235400:CDS | 20.0% |
| !!! | TAACATCTATATAATTTGCA+TGG | - | chr2_2:8218219-8218238 | None:intergenic | 20.0% |
| !! | TACCATTAGATAATGATTAA+TGG | + | chr2_2:8218237-8218256 | Msa0235400:intron | 20.0% |
| !! | TACCATTAATCATTATCTAA+TGG | - | chr2_2:8218242-8218261 | None:intergenic | 20.0% |
| !! | TAATGGTATGAAAATGATTT+AGG | + | chr2_2:8218254-8218273 | Msa0235400:intron | 20.0% |
| !! | ATTGAATTTAAACAAACTCA+AGG | + | chr2_2:8218339-8218358 | Msa0235400:intron | 20.0% |
| !! | TTGAATTTAAACAAACTCAA+GGG | + | chr2_2:8218340-8218359 | Msa0235400:intron | 20.0% |
| !! | TGAAAAACATATATAGTTAG+AGG | - | chr2_2:8218487-8218506 | None:intergenic | 20.0% |
| !!! | ATTACTAAAGTATTTAGTAC+TGG | + | chr2_2:8218780-8218799 | Msa0235400:CDS | 20.0% |
| !! | TACACGCTTTATTGAAAATA+AGG | - | chr2_2:8218192-8218211 | None:intergenic | 25.0% |
| !! | ATTGTTGTTGAAGAAACAAA+TGG | + | chr2_2:8218725-8218744 | Msa0235400:CDS | 25.0% |
| ! | CTTCAGATTGTTATCTATAA+AGG | - | chr2_2:8218856-8218875 | None:intergenic | 25.0% |
| ! | ACAATCTGAAGAAAATTGAT+TGG | + | chr2_2:8218865-8218884 | Msa0235400:CDS | 25.0% |
| ! | AGCATTTCATGATGTTAATA+CGG | + | chr2_2:8219115-8219134 | Msa0235400:CDS | 25.0% |
| !! | TACACGCTTTATTGAAAATA+AGG | - | chr2_2:8218192-8218211 | None:intergenic | 25.0% |
| !! | ATTGTTGTTGAAGAAACAAA+TGG | + | chr2_2:8218725-8218744 | Msa0235400:CDS | 25.0% |
| ! | CTTCAGATTGTTATCTATAA+AGG | - | chr2_2:8218856-8218875 | None:intergenic | 25.0% |
| ! | ACAATCTGAAGAAAATTGAT+TGG | + | chr2_2:8218865-8218884 | Msa0235400:CDS | 25.0% |
| ! | AGCATTTCATGATGTTAATA+CGG | + | chr2_2:8219115-8219134 | Msa0235400:CDS | 25.0% |
| AGTTACAAAAAAAGGAAAGC+TGG | + | chr2_2:8218150-8218169 | Msa0235400:CDS | 30.0% | |
| AATTCAATCTCTTACTAGTG+AGG | - | chr2_2:8218327-8218346 | None:intergenic | 30.0% | |
| !! | TTCAATAGGTTTGCTAAAGA+AGG | + | chr2_2:8218503-8218522 | Msa0235400:intron | 30.0% |
| AATCGAACGAAGCAAAAATA+TGG | + | chr2_2:8218659-8218678 | Msa0235400:CDS | 30.0% | |
| ATTGAGATTTCGCTATACTT+TGG | - | chr2_2:8218707-8218726 | None:intergenic | 30.0% | |
| ATCTGAAGAAAATTGATTGG+AGG | + | chr2_2:8218868-8218887 | Msa0235400:CDS | 30.0% | |
| TATGAATGGAATAGGTAATG+AGG | + | chr2_2:8218944-8218963 | Msa0235400:CDS | 30.0% | |
| ATGAATGGAATAGGTAATGA+GGG | + | chr2_2:8218945-8218964 | Msa0235400:CDS | 30.0% | |
| AATAGGTAATGAGGGTAATA+AGG | + | chr2_2:8218953-8218972 | Msa0235400:CDS | 30.0% | |
| ATAGGTAATGAGGGTAATAA+GGG | + | chr2_2:8218954-8218973 | Msa0235400:CDS | 30.0% | |
| TTGGATAGCAACATGAATTA+TGG | + | chr2_2:8219047-8219066 | Msa0235400:CDS | 30.0% | |
| AACATCATGAAATGCTAACA+TGG | - | chr2_2:8219111-8219130 | None:intergenic | 30.0% | |
| GATGTTAATACGGACATAAA+TGG | + | chr2_2:8219125-8219144 | Msa0235400:CDS | 30.0% | |
| AGTTACAAAAAAAGGAAAGC+TGG | + | chr2_2:8218150-8218169 | Msa0235400:CDS | 30.0% | |
| AATTCAATCTCTTACTAGTG+AGG | - | chr2_2:8218327-8218346 | None:intergenic | 30.0% | |
| !! | TTCAATAGGTTTGCTAAAGA+AGG | + | chr2_2:8218503-8218522 | Msa0235400:intron | 30.0% |
| AATCGAACGAAGCAAAAATA+TGG | + | chr2_2:8218659-8218678 | Msa0235400:CDS | 30.0% | |
| ATTGAGATTTCGCTATACTT+TGG | - | chr2_2:8218707-8218726 | None:intergenic | 30.0% | |
| ATCTGAAGAAAATTGATTGG+AGG | + | chr2_2:8218868-8218887 | Msa0235400:CDS | 30.0% | |
| TATGAATGGAATAGGTAATG+AGG | + | chr2_2:8218944-8218963 | Msa0235400:CDS | 30.0% | |
| ATGAATGGAATAGGTAATGA+GGG | + | chr2_2:8218945-8218964 | Msa0235400:CDS | 30.0% | |
| AATAGGTAATGAGGGTAATA+AGG | + | chr2_2:8218953-8218972 | Msa0235400:CDS | 30.0% | |
| ATAGGTAATGAGGGTAATAA+GGG | + | chr2_2:8218954-8218973 | Msa0235400:CDS | 30.0% | |
| TTGGATAGCAACATGAATTA+TGG | + | chr2_2:8219047-8219066 | Msa0235400:CDS | 30.0% | |
| AACATCATGAAATGCTAACA+TGG | - | chr2_2:8219111-8219130 | None:intergenic | 30.0% | |
| GATGTTAATACGGACATAAA+TGG | + | chr2_2:8219125-8219144 | Msa0235400:CDS | 30.0% | |
| GGAAGGCAAGTTACAAAAAA+AGG | + | chr2_2:8218142-8218161 | Msa0235400:CDS | 35.0% | |
| AATGAAATCAGCACTCTATG+TGG | + | chr2_2:8218528-8218547 | Msa0235400:CDS | 35.0% | |
| ATGAAATCAGCACTCTATGT+GGG | + | chr2_2:8218529-8218548 | Msa0235400:CDS | 35.0% | |
| GATAACACATTTCTTGTTGC+AGG | - | chr2_2:8218618-8218637 | None:intergenic | 35.0% | |
| ! | TTTTTGCTTCGTTCGATTTC+AGG | - | chr2_2:8218657-8218676 | None:intergenic | 35.0% |
| GTTGTTGAAGAAACAAATGG+AGG | + | chr2_2:8218728-8218747 | Msa0235400:CDS | 35.0% | |
| TGTTATCTATAAAGGCCATC+AGG | - | chr2_2:8218848-8218867 | None:intergenic | 35.0% | |
| AATGGAGCAGAAGATATGAA+TGG | + | chr2_2:8218930-8218949 | Msa0235400:CDS | 35.0% | |
| GCAGAAGATATGAATGGAAT+AGG | + | chr2_2:8218936-8218955 | Msa0235400:CDS | 35.0% | |
| AGGAGATATGCAAGCTAATA+TGG | + | chr2_2:8219001-8219020 | Msa0235400:CDS | 35.0% | |
| GGAGATATGCAAGCTAATAT+GGG | + | chr2_2:8219002-8219021 | Msa0235400:CDS | 35.0% | |
| TAGCAACATGAATTATGGCA+TGG | + | chr2_2:8219052-8219071 | Msa0235400:CDS | 35.0% | |
| TGATTATCAAGATCCACCTT+GGG | + | chr2_2:8219079-8219098 | Msa0235400:CDS | 35.0% | |
| ATACGGACATAAATGGTCTT+TGG | + | chr2_2:8219132-8219151 | Msa0235400:CDS | 35.0% | |
| GGAAGGCAAGTTACAAAAAA+AGG | + | chr2_2:8218142-8218161 | Msa0235400:CDS | 35.0% | |
| AATGAAATCAGCACTCTATG+TGG | + | chr2_2:8218528-8218547 | Msa0235400:CDS | 35.0% | |
| ATGAAATCAGCACTCTATGT+GGG | + | chr2_2:8218529-8218548 | Msa0235400:CDS | 35.0% | |
| GATAACACATTTCTTGTTGC+AGG | - | chr2_2:8218618-8218637 | None:intergenic | 35.0% | |
| ! | TTTTTGCTTCGTTCGATTTC+AGG | - | chr2_2:8218657-8218676 | None:intergenic | 35.0% |
| GTTGTTGAAGAAACAAATGG+AGG | + | chr2_2:8218728-8218747 | Msa0235400:CDS | 35.0% | |
| TGTTATCTATAAAGGCCATC+AGG | - | chr2_2:8218848-8218867 | None:intergenic | 35.0% | |
| AATGGAGCAGAAGATATGAA+TGG | + | chr2_2:8218930-8218949 | Msa0235400:CDS | 35.0% | |
| GCAGAAGATATGAATGGAAT+AGG | + | chr2_2:8218936-8218955 | Msa0235400:CDS | 35.0% | |
| AGGAGATATGCAAGCTAATA+TGG | + | chr2_2:8219001-8219020 | Msa0235400:CDS | 35.0% | |
| GGAGATATGCAAGCTAATAT+GGG | + | chr2_2:8219002-8219021 | Msa0235400:CDS | 35.0% | |
| TAGCAACATGAATTATGGCA+TGG | + | chr2_2:8219052-8219071 | Msa0235400:CDS | 35.0% | |
| TGATTATCAAGATCCACCTT+GGG | + | chr2_2:8219079-8219098 | Msa0235400:CDS | 35.0% | |
| ATACGGACATAAATGGTCTT+TGG | + | chr2_2:8219132-8219151 | Msa0235400:CDS | 35.0% | |
| GAAGCATGCGCAATAATCTT+TGG | + | chr2_2:8218555-8218574 | Msa0235400:CDS | 40.0% | |
| TGAAAACAATGCTCAACCAG+AGG | + | chr2_2:8218578-8218597 | Msa0235400:CDS | 40.0% | |
| CGAACGAAGCAAAAATATGG+TGG | + | chr2_2:8218662-8218681 | Msa0235400:CDS | 40.0% | |
| TCATTCATGTTCACATCCTC+GGG | - | chr2_2:8218816-8218835 | None:intergenic | 40.0% | |
| CTCATTCATGTTCACATCCT+CGG | - | chr2_2:8218817-8218836 | None:intergenic | 40.0% | |
| GACGGAAATTCAATCTCAAG+AGG | + | chr2_2:8218899-8218918 | Msa0235400:CDS | 40.0% | |
| ATTCAATCTCAAGAGGAAGC+TGG | + | chr2_2:8218906-8218925 | Msa0235400:CDS | 40.0% | |
| GTAATAAGGGTGATGCATCA+GGG | + | chr2_2:8218967-8218986 | Msa0235400:CDS | 40.0% | |
| ATGCAAGCTAATATGGGACA+TGG | + | chr2_2:8219008-8219027 | Msa0235400:CDS | 40.0% | |
| GTGATTATCAAGATCCACCT+TGG | + | chr2_2:8219078-8219097 | Msa0235400:CDS | 40.0% | |
| GAAGCATGCGCAATAATCTT+TGG | + | chr2_2:8218555-8218574 | Msa0235400:CDS | 40.0% | |
| TGAAAACAATGCTCAACCAG+AGG | + | chr2_2:8218578-8218597 | Msa0235400:CDS | 40.0% | |
| CGAACGAAGCAAAAATATGG+TGG | + | chr2_2:8218662-8218681 | Msa0235400:CDS | 40.0% | |
| TCATTCATGTTCACATCCTC+GGG | - | chr2_2:8218816-8218835 | None:intergenic | 40.0% | |
| CTCATTCATGTTCACATCCT+CGG | - | chr2_2:8218817-8218836 | None:intergenic | 40.0% | |
| GACGGAAATTCAATCTCAAG+AGG | + | chr2_2:8218899-8218918 | Msa0235400:CDS | 40.0% | |
| ATTCAATCTCAAGAGGAAGC+TGG | + | chr2_2:8218906-8218925 | Msa0235400:CDS | 40.0% | |
| GTAATAAGGGTGATGCATCA+GGG | + | chr2_2:8218967-8218986 | Msa0235400:CDS | 40.0% | |
| ATGCAAGCTAATATGGGACA+TGG | + | chr2_2:8219008-8219027 | Msa0235400:CDS | 40.0% | |
| GTGATTATCAAGATCCACCT+TGG | + | chr2_2:8219078-8219097 | Msa0235400:CDS | 40.0% | |
| ACATAGCCAATTCATCGAGC+AGG | + | chr2_2:8218121-8218140 | Msa0235400:CDS | 45.0% | |
| ACAATGCTCAACCAGAGGTT+TGG | + | chr2_2:8218583-8218602 | Msa0235400:CDS | 45.0% | |
| TTTCTTGTTGCAGGACCTTG+TGG | - | chr2_2:8218609-8218628 | None:intergenic | 45.0% | |
| TTCAGGCAAGTGTAGGAACT+TGG | - | chr2_2:8218640-8218659 | None:intergenic | 45.0% | |
| GTTCGATTTCAGGCAAGTGT+AGG | - | chr2_2:8218647-8218666 | None:intergenic | 45.0% | |
| GAATGAGCTGAATGACCTGA+TGG | + | chr2_2:8218830-8218849 | Msa0235400:CDS | 45.0% | |
| TGATTGGAGGTTGCAATCGA+CGG | + | chr2_2:8218881-8218900 | Msa0235400:CDS | 45.0% | |
| TCTCAAGAGGAAGCTGGAAA+TGG | + | chr2_2:8218912-8218931 | Msa0235400:CDS | 45.0% | |
| GGTAATAAGGGTGATGCATC+AGG | + | chr2_2:8218966-8218985 | Msa0235400:CDS | 45.0% | |
| ! | TAATATGGGACATGGTGCTG+AGG | + | chr2_2:8219016-8219035 | Msa0235400:CDS | 45.0% |
| ACATAGCCAATTCATCGAGC+AGG | + | chr2_2:8218121-8218140 | Msa0235400:CDS | 45.0% | |
| ACAATGCTCAACCAGAGGTT+TGG | + | chr2_2:8218583-8218602 | Msa0235400:CDS | 45.0% | |
| TTTCTTGTTGCAGGACCTTG+TGG | - | chr2_2:8218609-8218628 | None:intergenic | 45.0% | |
| TTCAGGCAAGTGTAGGAACT+TGG | - | chr2_2:8218640-8218659 | None:intergenic | 45.0% | |
| GTTCGATTTCAGGCAAGTGT+AGG | - | chr2_2:8218647-8218666 | None:intergenic | 45.0% | |
| GAATGAGCTGAATGACCTGA+TGG | + | chr2_2:8218830-8218849 | Msa0235400:CDS | 45.0% | |
| TGATTGGAGGTTGCAATCGA+CGG | + | chr2_2:8218881-8218900 | Msa0235400:CDS | 45.0% | |
| TCTCAAGAGGAAGCTGGAAA+TGG | + | chr2_2:8218912-8218931 | Msa0235400:CDS | 45.0% | |
| GGTAATAAGGGTGATGCATC+AGG | + | chr2_2:8218966-8218985 | Msa0235400:CDS | 45.0% | |
| ! | TAATATGGGACATGGTGCTG+AGG | + | chr2_2:8219016-8219035 | Msa0235400:CDS | 45.0% |
| AGCCAATTCATCGAGCAGGA+AGG | + | chr2_2:8218125-8218144 | Msa0235400:CDS | 50.0% | |
| TGCCTTCCTGCTCGATGAAT+TGG | - | chr2_2:8218130-8218149 | None:intergenic | 50.0% | |
| TACTGGACAATATCGTCCCG+AGG | + | chr2_2:8218797-8218816 | Msa0235400:CDS | 50.0% | |
| ! | TGGTGCTGAGGTTCAAGGTT+TGG | + | chr2_2:8219028-8219047 | Msa0235400:CDS | 50.0% |
| AACATGGAGAAGTCCCAAGG+TGG | - | chr2_2:8219095-8219114 | None:intergenic | 50.0% | |
| GCTAACATGGAGAAGTCCCA+AGG | - | chr2_2:8219098-8219117 | None:intergenic | 50.0% | |
| AGCCAATTCATCGAGCAGGA+AGG | + | chr2_2:8218125-8218144 | Msa0235400:CDS | 50.0% | |
| TGCCTTCCTGCTCGATGAAT+TGG | - | chr2_2:8218130-8218149 | None:intergenic | 50.0% | |
| TACTGGACAATATCGTCCCG+AGG | + | chr2_2:8218797-8218816 | Msa0235400:CDS | 50.0% | |
| ! | TGGTGCTGAGGTTCAAGGTT+TGG | + | chr2_2:8219028-8219047 | Msa0235400:CDS | 50.0% |
| AACATGGAGAAGTCCCAAGG+TGG | - | chr2_2:8219095-8219114 | None:intergenic | 50.0% | |
| GCTAACATGGAGAAGTCCCA+AGG | - | chr2_2:8219098-8219117 | None:intergenic | 50.0% | |
| CAACCAGAGGTTTGGCCACA+AGG | + | chr2_2:8218591-8218610 | Msa0235400:CDS | 55.0% | |
| TAAGGGTGATGCATCAGGGC+TGG | + | chr2_2:8218971-8218990 | Msa0235400:CDS | 55.0% | |
| ! | GCATCAGGGCTGGTGAATGT+AGG | + | chr2_2:8218981-8219000 | Msa0235400:CDS | 55.0% |
| ! | GGACATGGTGCTGAGGTTCA+AGG | + | chr2_2:8219023-8219042 | Msa0235400:CDS | 55.0% |
| CAACCAGAGGTTTGGCCACA+AGG | + | chr2_2:8218591-8218610 | Msa0235400:CDS | 55.0% | |
| TAAGGGTGATGCATCAGGGC+TGG | + | chr2_2:8218971-8218990 | Msa0235400:CDS | 55.0% | |
| ! | GCATCAGGGCTGGTGAATGT+AGG | + | chr2_2:8218981-8219000 | Msa0235400:CDS | 55.0% |
| ! | GGACATGGTGCTGAGGTTCA+AGG | + | chr2_2:8219023-8219042 | Msa0235400:CDS | 55.0% |
| GGACCTTGTGGCCAAACCTC+TGG | - | chr2_2:8218597-8218616 | None:intergenic | 60.0% | |
| GGACCTTGTGGCCAAACCTC+TGG | - | chr2_2:8218597-8218616 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 8218093 | 8219163 | 8218093 | ID=Msa0235400;Name=Msa0235400 |
| chr2_2 | mRNA | 8218093 | 8219163 | 8218093 | ID=Msa0235400-mRNA-1;Parent=Msa0235400;Name=Msa0235400-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|243 |
| chr2_2 | exon | 8218093 | 8218171 | 8218093 | ID=Msa0235400-mRNA-1:exon:3535;Parent=Msa0235400-mRNA-1 |
| chr2_2 | exon | 8218511 | 8219163 | 8218511 | ID=Msa0235400-mRNA-1:exon:3536;Parent=Msa0235400-mRNA-1 |
| chr2_2 | CDS | 8218093 | 8218171 | 8218093 | ID=Msa0235400-mRNA-1:cds;Parent=Msa0235400-mRNA-1 |
| chr2_2 | CDS | 8218511 | 8219163 | 8218511 | ID=Msa0235400-mRNA-1:cds;Parent=Msa0235400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
