Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0236410 | AES63272.2 | 84.466 | 103 | 10 | 1 | 29 | 125 | 1 | 103 | 1.15e-41 | 143 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0236410 | G7IPG2 | 84.466 | 103 | 10 | 1 | 29 | 125 | 1 | 103 | 5.48e-42 | 143 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0236410 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 44 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGCTGCTGTCTCAATTT+TGG | 0.174192 | 2_2:-9380396 | Msa0236410:CDS |
| CTTCTTCTTCAACTTCCTAA+TGG | 0.279260 | 2_2:-9378664 | None:intergenic |
| CGCCCAATGGCATTTCTTGA+TGG | 0.332196 | 2_2:+9380327 | None:intergenic |
| GGTTGGACATTGTTTGCAAT+TGG | 0.397971 | 2_2:+9380434 | None:intergenic |
| CGAGATGTCCCTGCTGCCTC+AGG | 0.421876 | 2_2:-9378722 | Msa0236410:CDS |
| GCAATTGGAGCAGTAGCAAT+TGG | 0.422553 | 2_2:+9380413 | None:intergenic |
| GGATCTCCTCCCATGATTCC+AGG | 0.423283 | 2_2:+9378686 | None:intergenic |
| TGTCCCACCACCTGGAATCA+TGG | 0.424311 | 2_2:-9378696 | Msa0236410:CDS |
| AAAATTGAGACAGCAGCAAT+TGG | 0.438976 | 2_2:+9380398 | None:intergenic |
| AACACTCCTATGTGGCGCTC+TGG | 0.449276 | 2_2:-9380218 | Msa0236410:CDS |
| TCAAGAAATGCCATTGGGCG+TGG | 0.452536 | 2_2:-9380324 | Msa0236410:CDS |
| TCAGGTTCTGTCCCACCACC+TGG | 0.454678 | 2_2:-9378704 | Msa0236410:CDS |
| CCTCCCATGATTCCAGGTGG+TGG | 0.456756 | 2_2:+9378692 | None:intergenic |
| CTCGTCCGCGGCGGATGTAA+CGG | 0.459014 | 2_2:+9380294 | None:intergenic |
| TTTCTTGATGGGCACGGACA+TGG | 0.477728 | 2_2:+9380339 | None:intergenic |
| CATTTACTACAAGAAACATA+TGG | 0.481434 | 2_2:-9378750 | Msa0236410:CDS |
| GGGACAGAACCTGAGGCAGC+AGG | 0.482176 | 2_2:+9378713 | None:intergenic |
| TATGTGGCGCTCTGGACCTA+TGG | 0.489769 | 2_2:-9380210 | Msa0236410:intron |
| GTCCCACCACCTGGAATCAT+GGG | 0.504732 | 2_2:-9378695 | Msa0236410:CDS |
| CAGAAGGTGGTCGGATCAGA+TGG | 0.507419 | 2_2:+9380266 | None:intergenic |
| TTGGAGCAGTAGCAATTGGT+TGG | 0.512553 | 2_2:+9380417 | None:intergenic |
| CTCCCATGATTCCAGGTGGT+GGG | 0.519420 | 2_2:+9378693 | None:intergenic |
| GCCCAATGGCATTTCTTGAT+GGG | 0.521674 | 2_2:+9380328 | None:intergenic |
| CGGCGCCGTCCCACGCCCAA+TGG | 0.523396 | 2_2:+9380314 | None:intergenic |
| GCCCATCAAGAAATGCCATT+GGG | 0.529843 | 2_2:-9380329 | Msa0236410:CDS |
| TGCCCATCAAGAAATGCCAT+TGG | 0.544247 | 2_2:-9380330 | Msa0236410:CDS |
| CATTAGGAAGTTGAAGAAGA+AGG | 0.548858 | 2_2:+9378665 | None:intergenic |
| AAATGCCATTGGGCGTGGGA+CGG | 0.561985 | 2_2:-9380319 | Msa0236410:CDS |
| ATGGCATTTCTTGATGGGCA+CGG | 0.572953 | 2_2:+9380333 | None:intergenic |
| GCAATGAAAATTTGTGCAGA+AGG | 0.580559 | 2_2:+9380250 | None:intergenic |
| CAAGAAATGCCATTGGGCGT+GGG | 0.595904 | 2_2:-9380323 | Msa0236410:CDS |
| GGACAGAACCTGAGGCAGCA+GGG | 0.617193 | 2_2:+9378714 | None:intergenic |
| AAATTTGTGCAGAAGGTGGT+CGG | 0.623430 | 2_2:+9380257 | None:intergenic |
| ATGAAAATTTGTGCAGAAGG+TGG | 0.644289 | 2_2:+9380253 | None:intergenic |
| AGACAAGAAACACTCCTATG+TGG | 0.647405 | 2_2:-9380226 | Msa0236410:CDS |
| ATAGGTCCAGAGCGCCACAT+AGG | 0.654562 | 2_2:+9380212 | None:intergenic |
| CAGACTTTGTGCAATGCGTG+TGG | 0.657380 | 2_2:-9378773 | Msa0236410:CDS |
| AGGTGGTGGGACAGAACCTG+AGG | 0.657762 | 2_2:+9378706 | None:intergenic |
| CAGATGGACGAGCTCGTCCG+CGG | 0.664959 | 2_2:+9380282 | None:intergenic |
| AAAGAATCAGTACAATACAT+CGG | 0.676733 | 2_2:+9380362 | None:intergenic |
| ATGGACGAGCTCGTCCGCGG+CGG | 0.680751 | 2_2:+9380285 | None:intergenic |
| CCACCACCTGGAATCATGGG+AGG | 0.682520 | 2_2:-9378692 | Msa0236410:CDS |
| TCTCCTCCCATGATTCCAGG+TGG | 0.693154 | 2_2:+9378689 | None:intergenic |
| CGGCGCCGTTACATCCGCCG+CGG | 0.715105 | 2_2:-9380299 | Msa0236410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTATTTTATAAGATTTTAA+GGG | + | chr2_2:9379818-9379837 | None:intergenic | 10.0% |
| !!! | ATGTATTTTATAAGATTTTA+AGG | + | chr2_2:9379819-9379838 | None:intergenic | 10.0% |
| !!! | CTATTGATTTTAAAATTTTA+AGG | + | chr2_2:9379847-9379866 | None:intergenic | 10.0% |
| !!! | ATAGTAAAAGAATTTTTTAT+TGG | - | chr2_2:9379863-9379882 | Msa0236410:intron | 10.0% |
| !!! | TGTATTTTATAAGATTTTAA+GGG | + | chr2_2:9379818-9379837 | None:intergenic | 10.0% |
| !!! | ATGTATTTTATAAGATTTTA+AGG | + | chr2_2:9379819-9379838 | None:intergenic | 10.0% |
| !!! | CTATTGATTTTAAAATTTTA+AGG | + | chr2_2:9379847-9379866 | None:intergenic | 10.0% |
| !!! | ATAGTAAAAGAATTTTTTAT+TGG | - | chr2_2:9379863-9379882 | Msa0236410:intron | 10.0% |
| !!! | TTTTTTAACTAATAATCAGT+TGG | + | chr2_2:9379020-9379039 | None:intergenic | 15.0% |
| !! | GATCTTATATATAAAAAGTA+AGG | - | chr2_2:9379077-9379096 | Msa0236410:intron | 15.0% |
| !! | ATATAAAAAGTAAGGAATTA+AGG | - | chr2_2:9379085-9379104 | Msa0236410:intron | 15.0% |
| !!! | TTTAATAAATTGGATTTTGA+TGG | - | chr2_2:9379389-9379408 | Msa0236410:intron | 15.0% |
| !!! | TTTTTTTTGAAAGATTTGTA+AGG | - | chr2_2:9379689-9379708 | Msa0236410:intron | 15.0% |
| !!! | TTTTTTTGAAAGATTTGTAA+GGG | - | chr2_2:9379690-9379709 | Msa0236410:intron | 15.0% |
| !!! | ATGGGATTTTAAAATTTTAA+AGG | + | chr2_2:9379988-9380007 | None:intergenic | 15.0% |
| !!! | TTTTTTAACTAATAATCAGT+TGG | + | chr2_2:9379020-9379039 | None:intergenic | 15.0% |
| !! | GATCTTATATATAAAAAGTA+AGG | - | chr2_2:9379077-9379096 | Msa0236410:intron | 15.0% |
| !! | ATATAAAAAGTAAGGAATTA+AGG | - | chr2_2:9379085-9379104 | Msa0236410:intron | 15.0% |
| !!! | TTTAATAAATTGGATTTTGA+TGG | - | chr2_2:9379389-9379408 | Msa0236410:intron | 15.0% |
| !!! | TTTTTTTTGAAAGATTTGTA+AGG | - | chr2_2:9379689-9379708 | Msa0236410:intron | 15.0% |
| !!! | TTTTTTTGAAAGATTTGTAA+GGG | - | chr2_2:9379690-9379709 | Msa0236410:intron | 15.0% |
| !!! | ATGGGATTTTAAAATTTTAA+AGG | + | chr2_2:9379988-9380007 | None:intergenic | 15.0% |
| !! | TTAATTATGAAAAAGTCTTG+TGG | - | chr2_2:9379209-9379228 | Msa0236410:intron | 20.0% |
| !! | CAAAATCATTTAAATTTCGA+AGG | - | chr2_2:9379362-9379381 | Msa0236410:intron | 20.0% |
| !! | ATGAAAAGATGAGATTTATT+GGG | - | chr2_2:9379458-9379477 | Msa0236410:intron | 20.0% |
| !! | TAATTTCAAACACAAAATGA+GGG | - | chr2_2:9379652-9379671 | Msa0236410:intron | 20.0% |
| !!! | ATATGTACAATTGAATTTTG+TGG | - | chr2_2:9379728-9379747 | Msa0236410:intron | 20.0% |
| !!! | TATGTACAATTGAATTTTGT+GGG | - | chr2_2:9379729-9379748 | Msa0236410:intron | 20.0% |
| !! | TAACAAACAAAAAATGTGTA+TGG | - | chr2_2:9379763-9379782 | Msa0236410:intron | 20.0% |
| !!! | AAAGGATTCAATGAATTTTA+GGG | + | chr2_2:9379970-9379989 | None:intergenic | 20.0% |
| !!! | TAAAGGATTCAATGAATTTT+AGG | + | chr2_2:9379971-9379990 | None:intergenic | 20.0% |
| !!! | ATTTATCACACTAACTTTTA+AGG | + | chr2_2:9380026-9380045 | None:intergenic | 20.0% |
| !!! | TTGATTTTGTGAGATTTTAA+TGG | + | chr2_2:9380049-9380068 | None:intergenic | 20.0% |
| !! | TTAATTATGAAAAAGTCTTG+TGG | - | chr2_2:9379209-9379228 | Msa0236410:intron | 20.0% |
| !! | CAAAATCATTTAAATTTCGA+AGG | - | chr2_2:9379362-9379381 | Msa0236410:intron | 20.0% |
| !! | ATGAAAAGATGAGATTTATT+GGG | - | chr2_2:9379458-9379477 | Msa0236410:intron | 20.0% |
| !! | TAATTTCAAACACAAAATGA+GGG | - | chr2_2:9379652-9379671 | Msa0236410:intron | 20.0% |
| !!! | ATATGTACAATTGAATTTTG+TGG | - | chr2_2:9379728-9379747 | Msa0236410:intron | 20.0% |
| !!! | TATGTACAATTGAATTTTGT+GGG | - | chr2_2:9379729-9379748 | Msa0236410:intron | 20.0% |
| !! | TAACAAACAAAAAATGTGTA+TGG | - | chr2_2:9379763-9379782 | Msa0236410:intron | 20.0% |
| !!! | AAAGGATTCAATGAATTTTA+GGG | + | chr2_2:9379970-9379989 | None:intergenic | 20.0% |
| !!! | TAAAGGATTCAATGAATTTT+AGG | + | chr2_2:9379971-9379990 | None:intergenic | 20.0% |
| !!! | ATTTATCACACTAACTTTTA+AGG | + | chr2_2:9380026-9380045 | None:intergenic | 20.0% |
| !!! | TTGATTTTGTGAGATTTTAA+TGG | + | chr2_2:9380049-9380068 | None:intergenic | 20.0% |
| ! | AAAGAATCAGTACAATACAT+CGG | + | chr2_2:9378823-9378842 | None:intergenic | 25.0% |
| !!! | GTCATTTTAAAAAAGTCTTG+AGG | - | chr2_2:9379293-9379312 | Msa0236410:intron | 25.0% |
| ! | ATCACTTAAAAAAAGTCTCA+TGG | - | chr2_2:9379335-9379354 | Msa0236410:intron | 25.0% |
| ! | CGAAGGATTGTTTAATAAAT+TGG | - | chr2_2:9379379-9379398 | Msa0236410:intron | 25.0% |
| ! | CATGAAAAGATGAGATTTAT+TGG | - | chr2_2:9379457-9379476 | Msa0236410:intron | 25.0% |
| ! | CTAATTTCAAACACAAAATG+AGG | - | chr2_2:9379651-9379670 | Msa0236410:intron | 25.0% |
| !! | AAGGATTCAATGAATTTTAG+GGG | + | chr2_2:9379969-9379988 | None:intergenic | 25.0% |
| !! | AGGATTTCAAAGGATTTTAT+GGG | + | chr2_2:9380006-9380025 | None:intergenic | 25.0% |
| !! | AAGGATTTCAAAGGATTTTA+TGG | + | chr2_2:9380007-9380026 | None:intergenic | 25.0% |
| !!! | CTAACTTTTAAGGATTTCAA+AGG | + | chr2_2:9380016-9380035 | None:intergenic | 25.0% |
| ! | TGTCTCAAAAATTCAACTAA+GGG | + | chr2_2:9380153-9380172 | None:intergenic | 25.0% |
| ! | ATGTCTCAAAAATTCAACTA+AGG | + | chr2_2:9380154-9380173 | None:intergenic | 25.0% |
| ! | AACATAGAAGACTATTGTTA+TGG | + | chr2_2:9380290-9380309 | None:intergenic | 25.0% |
| ! | CATTTACTACAAGAAACATA+TGG | - | chr2_2:9380342-9380361 | Msa0236410:CDS | 25.0% |
| ! | AACATAGAAGACTATTGTTA+TGG | + | chr2_2:9380290-9380309 | None:intergenic | 25.0% |
| ! | CATTTACTACAAGAAACATA+TGG | - | chr2_2:9380342-9380361 | Msa0236410:CDS | 25.0% |
| ! | AAAGAATCAGTACAATACAT+CGG | + | chr2_2:9378823-9378842 | None:intergenic | 25.0% |
| !!! | GTCATTTTAAAAAAGTCTTG+AGG | - | chr2_2:9379293-9379312 | Msa0236410:intron | 25.0% |
| ! | ATCACTTAAAAAAAGTCTCA+TGG | - | chr2_2:9379335-9379354 | Msa0236410:intron | 25.0% |
| ! | CGAAGGATTGTTTAATAAAT+TGG | - | chr2_2:9379379-9379398 | Msa0236410:intron | 25.0% |
| ! | CATGAAAAGATGAGATTTAT+TGG | - | chr2_2:9379457-9379476 | Msa0236410:intron | 25.0% |
| ! | CTAATTTCAAACACAAAATG+AGG | - | chr2_2:9379651-9379670 | Msa0236410:intron | 25.0% |
| !! | AAGGATTCAATGAATTTTAG+GGG | + | chr2_2:9379969-9379988 | None:intergenic | 25.0% |
| !! | AGGATTTCAAAGGATTTTAT+GGG | + | chr2_2:9380006-9380025 | None:intergenic | 25.0% |
| !! | AAGGATTTCAAAGGATTTTA+TGG | + | chr2_2:9380007-9380026 | None:intergenic | 25.0% |
| !!! | CTAACTTTTAAGGATTTCAA+AGG | + | chr2_2:9380016-9380035 | None:intergenic | 25.0% |
| ! | TGTCTCAAAAATTCAACTAA+GGG | + | chr2_2:9380153-9380172 | None:intergenic | 25.0% |
| ! | ATGTCTCAAAAATTCAACTA+AGG | + | chr2_2:9380154-9380173 | None:intergenic | 25.0% |
| ! | AACATAGAAGACTATTGTTA+TGG | + | chr2_2:9380290-9380309 | None:intergenic | 25.0% |
| ! | CATTTACTACAAGAAACATA+TGG | - | chr2_2:9380342-9380361 | Msa0236410:CDS | 25.0% |
| ! | AACATAGAAGACTATTGTTA+TGG | + | chr2_2:9380290-9380309 | None:intergenic | 25.0% |
| ! | CATTTACTACAAGAAACATA+TGG | - | chr2_2:9380342-9380361 | Msa0236410:CDS | 25.0% |
| !!! | GTTAGTTTTGAGTGTATTTG+AGG | + | chr2_2:9378713-9378732 | None:intergenic | 30.0% |
| !! | AAATTTACCTTTGGAACCAT+AGG | + | chr2_2:9378991-9379010 | None:intergenic | 30.0% |
| !! | TGGTGTTGTAAATTTACCTT+TGG | + | chr2_2:9379000-9379019 | None:intergenic | 30.0% |
| TTATGTCAAATAGTCTAGTG+TGG | - | chr2_2:9379041-9379060 | Msa0236410:intron | 30.0% | |
| ! | TGTATTGGATTAGGATTCTA+TGG | - | chr2_2:9379170-9379189 | Msa0236410:intron | 30.0% |
| ! | GTATTGGATTAGGATTCTAT+GGG | - | chr2_2:9379171-9379190 | Msa0236410:intron | 30.0% |
| GCAACTTAAAAAAAGTCTTG+TGG | - | chr2_2:9379251-9379270 | Msa0236410:intron | 30.0% | |
| !!! | TTGGATTTTGATGGATTTTG+TGG | - | chr2_2:9379398-9379417 | Msa0236410:intron | 30.0% |
| !!! | TGGATTTTGATGGATTTTGT+GGG | - | chr2_2:9379399-9379418 | Msa0236410:intron | 30.0% |
| TCTCAAAAATTCAACTAAGG+GGG | + | chr2_2:9380151-9380170 | None:intergenic | 30.0% | |
| GTCTCAAAAATTCAACTAAG+GGG | + | chr2_2:9380152-9380171 | None:intergenic | 30.0% | |
| !!! | GTTAGTTTTGAGTGTATTTG+AGG | + | chr2_2:9378713-9378732 | None:intergenic | 30.0% |
| !! | AAATTTACCTTTGGAACCAT+AGG | + | chr2_2:9378991-9379010 | None:intergenic | 30.0% |
| !! | TGGTGTTGTAAATTTACCTT+TGG | + | chr2_2:9379000-9379019 | None:intergenic | 30.0% |
| TTATGTCAAATAGTCTAGTG+TGG | - | chr2_2:9379041-9379060 | Msa0236410:intron | 30.0% | |
| ! | TGTATTGGATTAGGATTCTA+TGG | - | chr2_2:9379170-9379189 | Msa0236410:intron | 30.0% |
| ! | GTATTGGATTAGGATTCTAT+GGG | - | chr2_2:9379171-9379190 | Msa0236410:intron | 30.0% |
| GCAACTTAAAAAAAGTCTTG+TGG | - | chr2_2:9379251-9379270 | Msa0236410:intron | 30.0% | |
| !!! | TTGGATTTTGATGGATTTTG+TGG | - | chr2_2:9379398-9379417 | Msa0236410:intron | 30.0% |
| !!! | TGGATTTTGATGGATTTTGT+GGG | - | chr2_2:9379399-9379418 | Msa0236410:intron | 30.0% |
| TCTCAAAAATTCAACTAAGG+GGG | + | chr2_2:9380151-9380170 | None:intergenic | 30.0% | |
| GTCTCAAAAATTCAACTAAG+GGG | + | chr2_2:9380152-9380171 | None:intergenic | 30.0% | |
| CAAAACTAACGTTTGTGAAC+AGG | - | chr2_2:9378723-9378742 | Msa0236410:CDS | 35.0% | |
| AAAATTGAGACAGCAGCAAT+TGG | + | chr2_2:9378787-9378806 | None:intergenic | 35.0% | |
| ! | AATTGCTGCTGTCTCAATTT+TGG | - | chr2_2:9378786-9378805 | Msa0236410:intron | 35.0% |
| ATGAAAATTTGTGCAGAAGG+TGG | + | chr2_2:9378932-9378951 | None:intergenic | 35.0% | |
| GCAATGAAAATTTGTGCAGA+AGG | + | chr2_2:9378935-9378954 | None:intergenic | 35.0% | |
| !! | GCATGAACATTTTGGTATGT+TGG | + | chr2_2:9379126-9379145 | None:intergenic | 35.0% |
| !! | CGTTTGAGTTTTTCTAAGAG+AGG | + | chr2_2:9379625-9379644 | None:intergenic | 35.0% |
| CTCAAAAATTCAACTAAGGG+GGG | + | chr2_2:9380150-9380169 | None:intergenic | 35.0% | |
| CAAAACTAACGTTTGTGAAC+AGG | - | chr2_2:9378723-9378742 | Msa0236410:CDS | 35.0% | |
| AAAATTGAGACAGCAGCAAT+TGG | + | chr2_2:9378787-9378806 | None:intergenic | 35.0% | |
| ! | AATTGCTGCTGTCTCAATTT+TGG | - | chr2_2:9378786-9378805 | Msa0236410:intron | 35.0% |
| ATGAAAATTTGTGCAGAAGG+TGG | + | chr2_2:9378932-9378951 | None:intergenic | 35.0% | |
| GCAATGAAAATTTGTGCAGA+AGG | + | chr2_2:9378935-9378954 | None:intergenic | 35.0% | |
| !! | GCATGAACATTTTGGTATGT+TGG | + | chr2_2:9379126-9379145 | None:intergenic | 35.0% |
| !! | CGTTTGAGTTTTTCTAAGAG+AGG | + | chr2_2:9379625-9379644 | None:intergenic | 35.0% |
| CTCAAAAATTCAACTAAGGG+GGG | + | chr2_2:9380150-9380169 | None:intergenic | 35.0% | |
| GGTTGGACATTGTTTGCAAT+TGG | + | chr2_2:9378751-9378770 | None:intergenic | 40.0% | |
| AAATTTGTGCAGAAGGTGGT+CGG | + | chr2_2:9378928-9378947 | None:intergenic | 40.0% | |
| AGACAAGAAACACTCCTATG+TGG | - | chr2_2:9378956-9378975 | Msa0236410:intron | 40.0% | |
| ! | GGCTAACTGCATGAACATTT+TGG | + | chr2_2:9379134-9379153 | None:intergenic | 40.0% |
| TTAGGGGGATGTATTGGATT+AGG | - | chr2_2:9379161-9379180 | Msa0236410:intron | 40.0% | |
| GGTTGGACATTGTTTGCAAT+TGG | + | chr2_2:9378751-9378770 | None:intergenic | 40.0% | |
| AAATTTGTGCAGAAGGTGGT+CGG | + | chr2_2:9378928-9378947 | None:intergenic | 40.0% | |
| AGACAAGAAACACTCCTATG+TGG | - | chr2_2:9378956-9378975 | Msa0236410:intron | 40.0% | |
| ! | GGCTAACTGCATGAACATTT+TGG | + | chr2_2:9379134-9379153 | None:intergenic | 40.0% |
| TTAGGGGGATGTATTGGATT+AGG | - | chr2_2:9379161-9379180 | Msa0236410:intron | 40.0% | |
| TTGGAGCAGTAGCAATTGGT+TGG | + | chr2_2:9378768-9378787 | None:intergenic | 45.0% | |
| GCAATTGGAGCAGTAGCAAT+TGG | + | chr2_2:9378772-9378791 | None:intergenic | 45.0% | |
| ! | ATGGCATTTCTTGATGGGCA+CGG | + | chr2_2:9378852-9378871 | None:intergenic | 45.0% |
| TGCCCATCAAGAAATGCCAT+TGG | - | chr2_2:9378852-9378871 | Msa0236410:intron | 45.0% | |
| GCCCATCAAGAAATGCCATT+GGG | - | chr2_2:9378853-9378872 | Msa0236410:intron | 45.0% | |
| GCCCAATGGCATTTCTTGAT+GGG | + | chr2_2:9378857-9378876 | None:intergenic | 45.0% | |
| !! | ATACATCCCCCTAAGTTGGT+GGG | + | chr2_2:9379155-9379174 | None:intergenic | 45.0% |
| ! | AATACATCCCCCTAAGTTGG+TGG | + | chr2_2:9379156-9379175 | None:intergenic | 45.0% |
| ACCAACTTAGGGGGATGTAT+TGG | - | chr2_2:9379155-9379174 | Msa0236410:intron | 45.0% | |
| TCCAATACATCCCCCTAAGT+TGG | + | chr2_2:9379159-9379178 | None:intergenic | 45.0% | |
| ATAGAGAGACGAGGAGAGAA+AGG | + | chr2_2:9379549-9379568 | None:intergenic | 45.0% | |
| AATGGAGAGATAGAGAGACG+AGG | + | chr2_2:9379558-9379577 | None:intergenic | 45.0% | |
| ! | TAAGGGGGGTGTATTGGATT+AGG | + | chr2_2:9380136-9380155 | None:intergenic | 45.0% |
| ! | TTCAACTAAGGGGGGTGTAT+TGG | + | chr2_2:9380142-9380161 | None:intergenic | 45.0% |
| TTGGAGCAGTAGCAATTGGT+TGG | + | chr2_2:9378768-9378787 | None:intergenic | 45.0% | |
| GCAATTGGAGCAGTAGCAAT+TGG | + | chr2_2:9378772-9378791 | None:intergenic | 45.0% | |
| ! | ATGGCATTTCTTGATGGGCA+CGG | + | chr2_2:9378852-9378871 | None:intergenic | 45.0% |
| TGCCCATCAAGAAATGCCAT+TGG | - | chr2_2:9378852-9378871 | Msa0236410:intron | 45.0% | |
| GCCCATCAAGAAATGCCATT+GGG | - | chr2_2:9378853-9378872 | Msa0236410:intron | 45.0% | |
| GCCCAATGGCATTTCTTGAT+GGG | + | chr2_2:9378857-9378876 | None:intergenic | 45.0% | |
| !! | ATACATCCCCCTAAGTTGGT+GGG | + | chr2_2:9379155-9379174 | None:intergenic | 45.0% |
| ! | AATACATCCCCCTAAGTTGG+TGG | + | chr2_2:9379156-9379175 | None:intergenic | 45.0% |
| ACCAACTTAGGGGGATGTAT+TGG | - | chr2_2:9379155-9379174 | Msa0236410:intron | 45.0% | |
| TCCAATACATCCCCCTAAGT+TGG | + | chr2_2:9379159-9379178 | None:intergenic | 45.0% | |
| ATAGAGAGACGAGGAGAGAA+AGG | + | chr2_2:9379549-9379568 | None:intergenic | 45.0% | |
| AATGGAGAGATAGAGAGACG+AGG | + | chr2_2:9379558-9379577 | None:intergenic | 45.0% | |
| ! | TAAGGGGGGTGTATTGGATT+AGG | + | chr2_2:9380136-9380155 | None:intergenic | 45.0% |
| ! | TTCAACTAAGGGGGGTGTAT+TGG | + | chr2_2:9380142-9380161 | None:intergenic | 45.0% |
| !!! | TTTTTATTGAAATAATAAAA+TGG | - | chr2_2:9378682-9378701 | Msa0236410:CDS | 5.0% |
| !! | AATTAATTAAAAAAGAAATT+AGG | - | chr2_2:9380191-9380210 | Msa0236410:intron | 5.0% |
| !!! | TTTTTATTGAAATAATAAAA+TGG | - | chr2_2:9378682-9378701 | Msa0236410:CDS | 5.0% |
| !! | AATTAATTAAAAAAGAAATT+AGG | - | chr2_2:9380191-9380210 | Msa0236410:intron | 5.0% |
| ! | TTTCTTGATGGGCACGGACA+TGG | + | chr2_2:9378846-9378865 | None:intergenic | 50.0% |
| CGCCCAATGGCATTTCTTGA+TGG | + | chr2_2:9378858-9378877 | None:intergenic | 50.0% | |
| TCAAGAAATGCCATTGGGCG+TGG | - | chr2_2:9378858-9378877 | Msa0236410:intron | 50.0% | |
| CAAGAAATGCCATTGGGCGT+GGG | - | chr2_2:9378859-9378878 | Msa0236410:intron | 50.0% | |
| CTCTGGACCTATGGTTCCAA+AGG | - | chr2_2:9378981-9379000 | Msa0236410:intron | 50.0% | |
| TGCAGTTAGCCCACCAACTT+AGG | - | chr2_2:9379143-9379162 | Msa0236410:intron | 50.0% | |
| GCAGTTAGCCCACCAACTTA+GGG | - | chr2_2:9379144-9379163 | Msa0236410:intron | 50.0% | |
| CAGTTAGCCCACCAACTTAG+GGG | - | chr2_2:9379145-9379164 | Msa0236410:intron | 50.0% | |
| AGTTAGCCCACCAACTTAGG+GGG | - | chr2_2:9379146-9379165 | Msa0236410:intron | 50.0% | |
| ACGAGGAGAGAAAGGAGAGA+GGG | + | chr2_2:9379541-9379560 | None:intergenic | 50.0% | |
| AGAGGGAGAGAGAGAGAGAA+TGG | + | chr2_2:9379576-9379595 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAAGAGAGGA+GGG | + | chr2_2:9379599-9379618 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAAGAGAGG+AGG | + | chr2_2:9379600-9379619 | None:intergenic | 50.0% | |
| GTGAGAGAGAGAGAGAAGAG+AGG | + | chr2_2:9379603-9379622 | None:intergenic | 50.0% | |
| CAGACTTTGTGCAATGCGTG+TGG | - | chr2_2:9380319-9380338 | Msa0236410:CDS | 50.0% | |
| CAGACTTTGTGCAATGCGTG+TGG | - | chr2_2:9380319-9380338 | Msa0236410:CDS | 50.0% | |
| ! | TTTCTTGATGGGCACGGACA+TGG | + | chr2_2:9378846-9378865 | None:intergenic | 50.0% |
| CGCCCAATGGCATTTCTTGA+TGG | + | chr2_2:9378858-9378877 | None:intergenic | 50.0% | |
| TCAAGAAATGCCATTGGGCG+TGG | - | chr2_2:9378858-9378877 | Msa0236410:intron | 50.0% | |
| CAAGAAATGCCATTGGGCGT+GGG | - | chr2_2:9378859-9378878 | Msa0236410:intron | 50.0% | |
| CTCTGGACCTATGGTTCCAA+AGG | - | chr2_2:9378981-9379000 | Msa0236410:intron | 50.0% | |
| TGCAGTTAGCCCACCAACTT+AGG | - | chr2_2:9379143-9379162 | Msa0236410:intron | 50.0% | |
| GCAGTTAGCCCACCAACTTA+GGG | - | chr2_2:9379144-9379163 | Msa0236410:intron | 50.0% | |
| CAGTTAGCCCACCAACTTAG+GGG | - | chr2_2:9379145-9379164 | Msa0236410:intron | 50.0% | |
| AGTTAGCCCACCAACTTAGG+GGG | - | chr2_2:9379146-9379165 | Msa0236410:intron | 50.0% | |
| ACGAGGAGAGAAAGGAGAGA+GGG | + | chr2_2:9379541-9379560 | None:intergenic | 50.0% | |
| AGAGGGAGAGAGAGAGAGAA+TGG | + | chr2_2:9379576-9379595 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAAGAGAGGA+GGG | + | chr2_2:9379599-9379618 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAAGAGAGG+AGG | + | chr2_2:9379600-9379619 | None:intergenic | 50.0% | |
| GTGAGAGAGAGAGAGAAGAG+AGG | + | chr2_2:9379603-9379622 | None:intergenic | 50.0% | |
| CAGACTTTGTGCAATGCGTG+TGG | - | chr2_2:9380319-9380338 | Msa0236410:CDS | 50.0% | |
| CAGACTTTGTGCAATGCGTG+TGG | - | chr2_2:9380319-9380338 | Msa0236410:CDS | 50.0% | |
| AAATGCCATTGGGCGTGGGA+CGG | - | chr2_2:9378863-9378882 | Msa0236410:intron | 55.0% | |
| CAGAAGGTGGTCGGATCAGA+TGG | + | chr2_2:9378919-9378938 | None:intergenic | 55.0% | |
| AACACTCCTATGTGGCGCTC+TGG | - | chr2_2:9378964-9378983 | Msa0236410:intron | 55.0% | |
| ! | ATAGGTCCAGAGCGCCACAT+AGG | + | chr2_2:9378973-9378992 | None:intergenic | 55.0% |
| ! | TATGTGGCGCTCTGGACCTA+TGG | - | chr2_2:9378972-9378991 | Msa0236410:intron | 55.0% |
| AGGAGAGAAAGGAGAGAGGG+GGG | + | chr2_2:9379538-9379557 | None:intergenic | 55.0% | |
| GAGGAGAGAAAGGAGAGAGG+GGG | + | chr2_2:9379539-9379558 | None:intergenic | 55.0% | |
| CGAGGAGAGAAAGGAGAGAG+GGG | + | chr2_2:9379540-9379559 | None:intergenic | 55.0% | |
| GACGAGGAGAGAAAGGAGAG+AGG | + | chr2_2:9379542-9379561 | None:intergenic | 55.0% | |
| GAGAGAAGAGAGGAGGGAGA+GGG | + | chr2_2:9379593-9379612 | None:intergenic | 55.0% | |
| AGAGAGAAGAGAGGAGGGAG+AGG | + | chr2_2:9379594-9379613 | None:intergenic | 55.0% | |
| TGTCCCACCACCTGGAATCA+TGG | - | chr2_2:9380486-9380505 | Msa0236410:intron | 55.0% | |
| GTCCCACCACCTGGAATCAT+GGG | - | chr2_2:9380487-9380506 | Msa0236410:intron | 55.0% | |
| CTCCCATGATTCCAGGTGGT+GGG | + | chr2_2:9380492-9380511 | None:intergenic | 55.0% | |
| TCTCCTCCCATGATTCCAGG+TGG | + | chr2_2:9380496-9380515 | None:intergenic | 55.0% | |
| GGATCTCCTCCCATGATTCC+AGG | + | chr2_2:9380499-9380518 | None:intergenic | 55.0% | |
| AAATGCCATTGGGCGTGGGA+CGG | - | chr2_2:9378863-9378882 | Msa0236410:intron | 55.0% | |
| CAGAAGGTGGTCGGATCAGA+TGG | + | chr2_2:9378919-9378938 | None:intergenic | 55.0% | |
| AACACTCCTATGTGGCGCTC+TGG | - | chr2_2:9378964-9378983 | Msa0236410:intron | 55.0% | |
| ! | ATAGGTCCAGAGCGCCACAT+AGG | + | chr2_2:9378973-9378992 | None:intergenic | 55.0% |
| ! | TATGTGGCGCTCTGGACCTA+TGG | - | chr2_2:9378972-9378991 | Msa0236410:intron | 55.0% |
| AGGAGAGAAAGGAGAGAGGG+GGG | + | chr2_2:9379538-9379557 | None:intergenic | 55.0% | |
| GAGGAGAGAAAGGAGAGAGG+GGG | + | chr2_2:9379539-9379558 | None:intergenic | 55.0% | |
| CGAGGAGAGAAAGGAGAGAG+GGG | + | chr2_2:9379540-9379559 | None:intergenic | 55.0% | |
| GACGAGGAGAGAAAGGAGAG+AGG | + | chr2_2:9379542-9379561 | None:intergenic | 55.0% | |
| GAGAGAAGAGAGGAGGGAGA+GGG | + | chr2_2:9379593-9379612 | None:intergenic | 55.0% | |
| AGAGAGAAGAGAGGAGGGAG+AGG | + | chr2_2:9379594-9379613 | None:intergenic | 55.0% | |
| TGTCCCACCACCTGGAATCA+TGG | - | chr2_2:9380486-9380505 | Msa0236410:intron | 55.0% | |
| GTCCCACCACCTGGAATCAT+GGG | - | chr2_2:9380487-9380506 | Msa0236410:intron | 55.0% | |
| CTCCCATGATTCCAGGTGGT+GGG | + | chr2_2:9380492-9380511 | None:intergenic | 55.0% | |
| TCTCCTCCCATGATTCCAGG+TGG | + | chr2_2:9380496-9380515 | None:intergenic | 55.0% | |
| GGATCTCCTCCCATGATTCC+AGG | + | chr2_2:9380499-9380518 | None:intergenic | 55.0% | |
| AGAAAGGAGAGAGGGGGGAG+GGG | + | chr2_2:9379533-9379552 | None:intergenic | 60.0% | |
| GAGAAAGGAGAGAGGGGGGA+GGG | + | chr2_2:9379534-9379553 | None:intergenic | 60.0% | |
| AGAGAAAGGAGAGAGGGGGG+AGG | + | chr2_2:9379535-9379554 | None:intergenic | 60.0% | |
| GGACAGAACCTGAGGCAGCA+GGG | + | chr2_2:9380471-9380490 | None:intergenic | 60.0% | |
| !! | AGGTGGTGGGACAGAACCTG+AGG | + | chr2_2:9380479-9380498 | None:intergenic | 60.0% |
| TCAGGTTCTGTCCCACCACC+TGG | - | chr2_2:9380478-9380497 | Msa0236410:intron | 60.0% | |
| CCTCCCATGATTCCAGGTGG+TGG | + | chr2_2:9380493-9380512 | None:intergenic | 60.0% | |
| CCACCACCTGGAATCATGGG+AGG | - | chr2_2:9380490-9380509 | Msa0236410:intron | 60.0% | |
| AGAAAGGAGAGAGGGGGGAG+GGG | + | chr2_2:9379533-9379552 | None:intergenic | 60.0% | |
| GAGAAAGGAGAGAGGGGGGA+GGG | + | chr2_2:9379534-9379553 | None:intergenic | 60.0% | |
| AGAGAAAGGAGAGAGGGGGG+AGG | + | chr2_2:9379535-9379554 | None:intergenic | 60.0% | |
| GGACAGAACCTGAGGCAGCA+GGG | + | chr2_2:9380471-9380490 | None:intergenic | 60.0% | |
| !! | AGGTGGTGGGACAGAACCTG+AGG | + | chr2_2:9380479-9380498 | None:intergenic | 60.0% |
| TCAGGTTCTGTCCCACCACC+TGG | - | chr2_2:9380478-9380497 | Msa0236410:intron | 60.0% | |
| CCTCCCATGATTCCAGGTGG+TGG | + | chr2_2:9380493-9380512 | None:intergenic | 60.0% | |
| CCACCACCTGGAATCATGGG+AGG | - | chr2_2:9380490-9380509 | Msa0236410:intron | 60.0% | |
| CTCGTCCGCGGCGGATGTAA+CGG | + | chr2_2:9378891-9378910 | None:intergenic | 65.0% | |
| CAGATGGACGAGCTCGTCCG+CGG | + | chr2_2:9378903-9378922 | None:intergenic | 65.0% | |
| GGGGGAGGGGAGAGAGAGAA+GGG | + | chr2_2:9379520-9379539 | None:intergenic | 65.0% | |
| CGAGATGTCCCTGCTGCCTC+AGG | - | chr2_2:9380460-9380479 | Msa0236410:intron | 65.0% | |
| GGGACAGAACCTGAGGCAGC+AGG | + | chr2_2:9380472-9380491 | None:intergenic | 65.0% | |
| CTCGTCCGCGGCGGATGTAA+CGG | + | chr2_2:9378891-9378910 | None:intergenic | 65.0% | |
| CAGATGGACGAGCTCGTCCG+CGG | + | chr2_2:9378903-9378922 | None:intergenic | 65.0% | |
| GGGGGAGGGGAGAGAGAGAA+GGG | + | chr2_2:9379520-9379539 | None:intergenic | 65.0% | |
| CGAGATGTCCCTGCTGCCTC+AGG | - | chr2_2:9380460-9380479 | Msa0236410:intron | 65.0% | |
| GGGACAGAACCTGAGGCAGC+AGG | + | chr2_2:9380472-9380491 | None:intergenic | 65.0% | |
| ATGGACGAGCTCGTCCGCGG+CGG | + | chr2_2:9378900-9378919 | None:intergenic | 70.0% | |
| GGGGGGAGGGGAGAGAGAGA+AGG | + | chr2_2:9379521-9379540 | None:intergenic | 70.0% | |
| ATGGACGAGCTCGTCCGCGG+CGG | + | chr2_2:9378900-9378919 | None:intergenic | 70.0% | |
| GGGGGGAGGGGAGAGAGAGA+AGG | + | chr2_2:9379521-9379540 | None:intergenic | 70.0% | |
| CGGCGCCGTTACATCCGCCG+CGG | - | chr2_2:9378883-9378902 | Msa0236410:intron | 75.0% | |
| CGGCGCCGTTACATCCGCCG+CGG | - | chr2_2:9378883-9378902 | Msa0236410:intron | 75.0% | |
| ! | CGGCGCCGTCCCACGCCCAA+TGG | + | chr2_2:9378871-9378890 | None:intergenic | 80.0% |
| ! | CGGCGCCGTCCCACGCCCAA+TGG | + | chr2_2:9378871-9378890 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 9378667 | 9380537 | 9378667 | ID=Msa0236410;Name=Msa0236410 |
| chr2_2 | mRNA | 9378667 | 9380537 | 9378667 | ID=Msa0236410-mRNA-1;Parent=Msa0236410;Name=Msa0236410-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0|0|0.66|1|1|3|0|126 |
| chr2_2 | exon | 9380532 | 9380537 | 9380532 | ID=Msa0236410-mRNA-1:exon:4047;Parent=Msa0236410-mRNA-1 |
| chr2_2 | exon | 9380211 | 9380459 | 9380211 | ID=Msa0236410-mRNA-1:exon:4046;Parent=Msa0236410-mRNA-1 |
| chr2_2 | exon | 9378667 | 9378792 | 9378667 | ID=Msa0236410-mRNA-1:exon:4045;Parent=Msa0236410-mRNA-1 |
| chr2_2 | CDS | 9380532 | 9380537 | 9380532 | ID=Msa0236410-mRNA-1:cds;Parent=Msa0236410-mRNA-1 |
| chr2_2 | CDS | 9380211 | 9380459 | 9380211 | ID=Msa0236410-mRNA-1:cds;Parent=Msa0236410-mRNA-1 |
| chr2_2 | CDS | 9378667 | 9378792 | 9378667 | ID=Msa0236410-mRNA-1:cds;Parent=Msa0236410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
