AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0236520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0236520 MtrunA17_Chr2g0289181 87.554 233 29 0 324 556 1 233 5.60e-151 432
Msa0236520 MtrunA17_Chr7g0266611 50.909 165 80 1 392 556 2 165 1.73e-38 139
Msa0236520 MtrunA17_Chr1g0202461 53.061 98 44 2 315 412 240 335 5.60e-29 118
Msa0236520 MtrunA17_Chr6g0470161 43.548 124 65 1 433 556 2 120 1.74e-27 107
Msa0236520 MtrunA17_Chr7g0248691 35.135 185 103 5 305 478 122 300 1.29e-26 110
Msa0236520 MtrunA17_Chr8g0348311 45.370 108 58 1 316 423 134 240 8.89e-26 108
Msa0236520 MtrunA17_Chr1g0184691 65.079 63 22 0 334 396 290 352 6.31e-24 103
Msa0236520 MtrunA17_Chr2g0293901 65.049 103 31 2 1 98 1 103 2.65e-23 97.8
Msa0236520 MtrunA17_Chr2g0293481 37.778 135 70 3 288 409 205 338 6.05e-23 102
Msa0236520 MtrunA17_Chr4g0071521 38.655 119 55 2 278 396 204 304 1.78e-22 98.6
Msa0236520 MtrunA17_Chr3g0139021 45.055 91 49 1 313 402 289 379 3.43e-22 99.0
Msa0236520 MtrunA17_Chr4g0053281 47.674 86 42 1 313 395 239 324 4.51e-22 97.8
Msa0236520 MtrunA17_Chr5g0401821 56.061 66 29 0 330 395 192 257 7.35e-22 95.5
Msa0236520 MtrunA17_Chr8g0387501 54.795 73 32 1 338 410 130 201 1.20e-21 95.1
Msa0236520 MtrunA17_Chr7g0228941 56.250 64 28 0 331 394 46 109 1.77e-21 90.1
Msa0236520 MtrunA17_Chr8g0379461 59.677 62 25 0 336 397 75 136 2.08e-21 93.6
Msa0236520 MtrunA17_Chr7g0270051 46.154 91 42 1 315 398 24 114 3.02e-21 93.6
Msa0236520 MtrunA17_Chr1g0147881 43.363 113 56 2 286 394 211 319 5.45e-21 94.4
Msa0236520 MtrunA17_Chr2g0284321 47.253 91 44 1 311 397 5 95 8.88e-21 91.3
Msa0236520 MtrunA17_Chr2g0319961 59.677 62 25 0 336 397 79 140 1.11e-20 92.0
Msa0236520 MtrunA17_Chr8g0366921 51.000 100 35 3 1 92 1 94 1.55e-18 87.0
Msa0236520 MtrunA17_Chr2g0302391 35.345 116 69 1 282 397 162 271 9.11e-18 85.9
Msa0236520 MtrunA17_Chr3g0099641 50.000 60 30 0 338 397 252 311 4.33e-17 84.0
Msa0236520 MtrunA17_Chr1g0194481 41.111 90 51 2 317 406 139 226 1.36e-16 81.3
Msa0236520 MtrunA17_Chr3g0136961 50.847 59 29 0 337 395 138 196 5.06e-16 79.0
Msa0236520 MtrunA17_Chr7g0263531 48.276 87 43 2 322 408 174 258 1.13e-15 79.3
Msa0236520 MtrunA17_Chr7g0263531 44.444 81 42 2 332 412 356 433 1.48e-14 75.9
Msa0236520 MtrunA17_Chr6g0470151 50.538 93 40 1 1 87 1 93 1.97e-15 78.2
Msa0236520 MtrunA17_Chr6g0470151 38.211 123 57 4 255 360 233 353 1.78e-14 75.5
Msa0236520 MtrunA17_Chr7g0270831 49.206 63 32 0 335 397 214 276 2.14e-15 78.6
Msa0236520 MtrunA17_Chr1g0150271 47.541 61 32 0 337 397 101 161 2.82e-15 75.9
Msa0236520 MtrunA17_Chr4g0051881 46.053 76 39 2 323 398 165 238 2.83e-15 77.4
Msa0236520 MtrunA17_Chr3g0101131 52.308 65 30 1 338 402 416 479 4.11e-15 78.6
Msa0236520 MtrunA17_Chr5g0445311 46.575 73 38 1 326 398 353 424 4.59e-15 78.2
Msa0236520 MtrunA17_Chr4g0042831 49.296 71 35 1 332 402 273 342 4.87e-15 77.0
Msa0236520 MtrunA17_Chr2g0322391 46.479 71 38 0 338 408 350 420 5.96e-15 77.8
Msa0236520 MtrunA17_Chr7g0218081 53.846 65 29 1 334 398 407 470 6.05e-15 77.8
Msa0236520 MtrunA17_Chr7g0218081 50.704 71 33 2 333 403 224 292 2.78e-14 75.5
Msa0236520 MtrunA17_Chr5g0418191 50.725 69 33 1 334 402 317 384 7.20e-15 77.0
Msa0236520 MtrunA17_Chr5g0418191 52.174 69 31 2 333 401 147 213 1.83e-13 72.8
Msa0236520 MtrunA17_Chr2g0288871 48.333 60 31 0 338 397 306 365 9.04e-15 77.0
Msa0236520 MtrunA17_Chr4g0060271 44.156 77 41 1 323 397 239 315 1.43e-14 76.6
Msa0236520 MtrunA17_Chr4g0075201 48.333 60 31 0 338 397 268 327 1.52e-14 76.3
Msa0236520 MtrunA17_Chr3g0106491 56.250 64 26 2 338 401 199 260 2.01e-14 75.9
Msa0236520 MtrunA17_Chr3g0106491 47.761 67 34 1 332 398 360 425 2.72e-13 72.4
Msa0236520 MtrunA17_Chr5g0432161 50.746 67 32 1 332 398 416 481 2.22e-14 75.9
Msa0236520 MtrunA17_Chr4g0001361 47.541 61 32 0 337 397 162 222 2.25e-14 74.3
Msa0236520 MtrunA17_Chr3g0079691 49.296 71 34 2 337 407 280 348 2.25e-14 76.3
Msa0236520 MtrunA17_Chr3g0079691 52.459 61 28 1 338 398 496 555 1.53e-13 73.6
Msa0236520 MtrunA17_Chr4g0025061 43.023 86 47 2 325 408 346 431 2.29e-14 76.3
Msa0236520 MtrunA17_Chr7g0238921 44.318 88 41 4 324 410 113 193 3.28e-14 73.9
Msa0236520 MtrunA17_Chr4g0025051 45.070 71 39 0 338 408 336 406 3.93e-14 75.1
Msa0236520 MtrunA17_Chr7g0216891 50.877 57 28 0 338 394 220 276 4.57e-14 75.1
Msa0236520 MtrunA17_Chr4g0051181 50.000 60 30 0 338 397 244 303 7.04e-14 74.3
Msa0236520 MtrunA17_Chr4g0068541 40.580 69 40 1 338 406 209 276 7.47e-14 73.6
Msa0236520 MtrunA17_Chr7g0249301 42.268 97 49 3 337 433 62 151 9.91e-14 73.2
Msa0236520 MtrunA17_Chr7g0249301 46.269 67 35 1 332 398 287 352 8.80e-13 70.1
Msa0236520 MtrunA17_Chr7g0249311 50.000 72 34 2 337 408 179 248 1.08e-13 73.9
Msa0236520 MtrunA17_Chr7g0249311 44.156 77 42 1 332 408 387 462 1.36e-13 73.6
Msa0236520 MtrunA17_Chr5g0447701 52.459 61 28 1 338 398 253 312 1.22e-13 72.8
Msa0236520 MtrunA17_Chr5g0447701 51.471 68 31 2 333 400 88 153 1.57e-13 72.4
Msa0236520 MtrunA17_Chr7g0243891 41.935 93 50 3 309 401 190 278 1.65e-13 73.2
Msa0236520 MtrunA17_Chr7g0243891 39.773 88 52 1 311 398 348 434 6.64e-12 68.2
Msa0236520 MtrunA17_Chr4g0074001 47.692 65 33 1 338 402 360 423 2.57e-13 72.4
Msa0236520 MtrunA17_Chr1g0188941 49.180 61 30 1 338 398 52 111 2.68e-13 66.6
Msa0236520 MtrunA17_Chr7g0270191 38.554 83 48 2 325 405 131 212 3.26e-13 70.5
Msa0236520 MtrunA17_Chr1g0150281 46.552 58 31 0 338 395 141 198 3.38e-13 70.5
Msa0236520 MtrunA17_Chr3g0129321 43.750 64 35 1 334 397 115 177 5.43e-13 68.2
Msa0236520 MtrunA17_Chr4g0004911 48.438 64 32 1 334 397 333 395 5.63e-13 71.2
Msa0236520 MtrunA17_Chr4g0004911 41.558 77 44 1 321 397 168 243 1.21e-11 67.0
Msa0236520 MtrunA17_Chr7g0266621 55.952 84 36 1 1 84 1 83 6.17e-13 69.7
Msa0236520 MtrunA17_Chr5g0443131 45.161 62 33 1 337 398 157 217 6.44e-13 69.7
Msa0236520 MtrunA17_Chr2g0333851 45.161 62 34 0 337 398 169 230 7.33e-13 69.7
Msa0236520 MtrunA17_Chr8g0335811 46.875 64 33 1 332 395 149 211 1.28e-12 67.8
Msa0236520 MtrunA17_Chr3g0129361 42.857 70 37 2 328 395 133 201 1.33e-12 67.4
Msa0236520 MtrunA17_Chr1g0150801 45.902 61 32 1 334 394 99 158 1.42e-12 65.9
Msa0236520 MtrunA17_Chr8g0383351 43.750 64 35 1 332 395 155 217 1.45e-12 67.4
Msa0236520 MtrunA17_Chr8g0383251 43.750 64 35 1 334 397 105 167 1.58e-12 66.2
Msa0236520 MtrunA17_Chr5g0418781 36.735 98 60 2 308 405 96 191 1.93e-12 68.2
Msa0236520 MtrunA17_Chr1g0189391 32.500 120 58 4 313 410 59 177 3.94e-12 67.8
Msa0236520 MtrunA17_Chr7g0224801 40.984 61 35 1 334 394 90 149 3.25e-11 62.4
Msa0236520 MtrunA17_Chr6g0485431 44.615 65 34 2 338 401 155 218 6.51e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0236520 AT4G01250.1 48.454 97 49 1 315 411 106 201 2.89e-26 109
Msa0236520 AT5G52830.1 52.041 98 45 2 315 412 144 239 2.90e-26 110
Msa0236520 AT3G04670.1 48.936 94 38 1 313 396 228 321 5.87e-24 103
Msa0236520 AT5G28650.1 47.872 94 39 1 313 396 228 321 9.99e-24 102
Msa0236520 AT4G31550.2 47.917 96 43 2 313 403 218 311 4.95e-23 100
Msa0236520 AT2G24570.1 58.571 70 29 0 334 403 240 309 5.71e-23 100
Msa0236520 AT4G31550.1 57.143 70 30 0 334 403 243 312 1.00e-22 99.8
Msa0236520 AT4G23550.1 47.253 91 47 1 321 411 124 213 2.81e-22 98.2
Msa0236520 AT2G23320.1 52.326 86 34 2 315 395 215 298 3.65e-22 97.8
Msa0236520 AT4G24240.1 49.495 99 43 2 302 395 243 339 6.97e-22 97.8
Msa0236520 AT2G34830.1 44.444 99 45 2 317 406 186 283 7.72e-22 98.6
Msa0236520 AT2G34830.2 44.444 99 45 2 317 406 195 292 8.27e-22 98.6
Msa0236520 AT2G30590.1 48.936 94 38 2 313 396 279 372 1.44e-21 97.4
Msa0236520 AT5G45050.1 46.667 90 47 1 317 406 1160 1248 2.59e-21 99.4
Msa0236520 AT5G45050.2 46.667 90 47 1 317 406 1132 1220 2.68e-21 99.0
Msa0236520 AT5G45050.4 46.667 90 47 1 317 406 1021 1109 2.71e-21 99.0
Msa0236520 AT1G30650.1 37.500 136 70 4 281 406 155 285 4.09e-21 96.7
Msa0236520 AT1G29280.1 58.065 62 26 0 336 397 73 134 3.29e-20 90.9
Msa0236520 AT3G58710.1 53.731 67 31 0 336 402 70 136 8.02e-20 90.1
Msa0236520 AT3G58710.2 53.731 67 31 0 336 402 69 135 8.26e-20 90.1
Msa0236520 AT3G01080.2 54.688 64 28 1 334 397 341 403 9.29e-16 80.5
Msa0236520 AT3G01080.2 41.237 97 46 4 333 424 201 291 6.64e-15 77.8
Msa0236520 AT3G01080.1 54.688 64 28 1 334 397 303 365 1.16e-15 79.7
Msa0236520 AT3G01080.1 41.237 97 46 4 333 424 163 253 7.63e-15 77.4
Msa0236520 AT1G69810.1 45.833 72 38 1 338 408 204 275 1.80e-15 79.0
Msa0236520 AT3G01080.3 41.237 97 46 4 333 424 201 291 1.81e-15 78.2
Msa0236520 AT1G69810.2 45.833 72 38 1 338 408 146 217 1.88e-15 78.2
Msa0236520 AT1G62300.1 50.000 60 30 0 338 397 313 372 2.37e-15 79.3
Msa0236520 AT4G22070.4 50.000 60 30 0 338 397 298 357 2.90e-15 79.3
Msa0236520 AT4G22070.3 50.000 60 30 0 338 397 298 357 2.90e-15 79.3
Msa0236520 AT4G22070.2 50.000 60 30 0 338 397 298 357 2.90e-15 79.3
Msa0236520 AT4G22070.1 50.000 60 30 0 338 397 298 357 2.90e-15 79.3
Msa0236520 AT4G04450.2 43.421 76 43 0 338 413 199 274 3.21e-15 78.6
Msa0236520 AT2G47260.1 41.667 96 49 3 317 406 148 242 3.43e-15 77.4
Msa0236520 AT2G03340.1 53.125 64 29 1 334 397 412 474 4.22e-15 78.6
Msa0236520 AT2G03340.1 48.571 70 34 2 333 402 246 313 3.35e-12 69.3
Msa0236520 AT4G04450.1 43.421 76 43 0 338 413 293 368 6.30e-15 78.2
Msa0236520 AT1G64000.1 39.286 84 48 2 313 394 88 170 1.23e-14 73.2
Msa0236520 AT5G15130.2 39.535 86 50 1 314 397 160 245 1.76e-14 76.6
Msa0236520 AT2G38470.1 51.515 66 31 1 332 397 357 421 2.13e-14 76.3
Msa0236520 AT2G38470.1 48.684 76 37 2 322 397 169 242 2.19e-14 76.3
Msa0236520 AT5G15130.1 39.535 86 50 1 314 397 202 287 2.22e-14 76.3
Msa0236520 AT1G13960.1 51.562 64 30 1 334 397 406 468 2.97e-14 75.9
Msa0236520 AT1G13960.1 50.769 65 30 2 333 397 225 287 4.44e-12 68.9
Msa0236520 AT1G18860.1 50.000 60 30 0 338 397 240 299 3.97e-14 75.5
Msa0236520 AT2G04880.1 51.667 60 28 1 338 397 308 366 4.31e-14 75.1
Msa0236520 AT2G04880.2 51.667 60 28 1 338 397 284 342 4.93e-14 75.1
Msa0236520 AT1G13960.2 51.562 64 30 1 334 397 253 315 5.32e-14 74.3
Msa0236520 AT1G13960.2 48.571 70 34 2 333 402 72 139 1.05e-11 67.0
Msa0236520 AT3G62340.1 47.619 63 30 2 338 399 119 179 6.31e-14 72.8
Msa0236520 AT1G29860.1 44.595 74 38 2 327 398 124 196 6.48e-14 72.8
Msa0236520 AT5G43290.1 57.895 57 23 1 338 394 115 170 7.10e-14 72.8
Msa0236520 AT1G68150.1 50.000 60 30 0 338 397 236 295 7.45e-14 73.9
Msa0236520 AT1G80840.1 43.548 62 35 0 337 398 146 207 8.06e-14 72.8
Msa0236520 AT5G07100.1 45.946 74 39 1 332 405 229 301 9.53e-14 72.8
Msa0236520 AT5G07100.1 44.118 68 37 1 330 397 110 176 1.16e-11 66.6
Msa0236520 AT4G26640.5 52.459 61 28 1 338 398 206 265 9.86e-14 73.6
Msa0236520 AT4G26640.6 52.459 61 28 1 338 398 206 265 9.86e-14 73.6
Msa0236520 AT4G26640.4 52.459 61 28 1 338 398 206 265 9.86e-14 73.6
Msa0236520 AT4G26640.3 52.459 61 28 1 338 398 206 265 9.86e-14 73.6
Msa0236520 AT4G26640.7 52.459 61 28 1 338 398 342 401 9.90e-14 74.3
Msa0236520 AT4G26640.2 52.459 61 28 1 338 398 382 441 1.02e-13 74.3
Msa0236520 AT4G26640.1 52.459 61 28 1 338 398 310 369 1.15e-13 73.9
Msa0236520 AT4G18170.1 45.946 74 37 2 327 398 160 232 1.19e-13 72.8
Msa0236520 AT5G26170.1 50.000 62 30 1 334 395 110 170 1.43e-13 69.3
Msa0236520 AT2G30250.1 50.820 61 29 1 338 398 329 388 1.55e-13 73.2
Msa0236520 AT2G30250.1 50.000 64 30 2 338 401 167 228 9.13e-12 67.4
Msa0236520 AT5G41570.1 46.032 63 33 1 332 394 93 154 1.63e-13 69.3
Msa0236520 AT5G07100.2 49.254 67 33 1 332 398 136 201 1.91e-13 70.1
Msa0236520 AT5G07100.2 42.466 73 41 1 330 402 17 88 2.20e-11 64.3
Msa0236520 AT5G07100.4 49.254 67 33 1 332 398 136 201 1.91e-13 70.1
Msa0236520 AT5G07100.4 42.466 73 41 1 330 402 17 88 2.20e-11 64.3
Msa0236520 AT5G07100.5 49.254 67 33 1 332 398 136 201 1.91e-13 70.1
Msa0236520 AT5G07100.5 42.466 73 41 1 330 402 17 88 2.20e-11 64.3
Msa0236520 AT5G07100.3 49.254 67 33 1 332 398 136 201 1.91e-13 70.1
Msa0236520 AT5G07100.3 42.466 73 41 1 330 402 17 88 2.20e-11 64.3
Msa0236520 AT5G56270.1 49.254 67 33 1 332 398 482 547 1.97e-13 73.6
Msa0236520 AT5G56270.1 50.769 65 30 2 337 401 273 335 1.98e-12 70.5
Msa0236520 AT4G30935.1 47.692 65 33 1 338 402 332 395 2.18e-13 72.8
Msa0236520 AT4G01720.1 48.333 60 31 0 338 397 240 299 2.24e-13 73.2
Msa0236520 AT4G31800.2 44.262 61 34 0 337 397 111 171 2.25e-13 70.5
Msa0236520 AT1G55600.1 38.750 80 48 1 318 397 288 366 2.71e-13 72.8
Msa0236520 AT2G21900.1 49.180 61 30 1 338 398 110 169 2.79e-13 69.3
Msa0236520 AT2G37260.1 55.738 61 25 2 338 398 166 224 3.63e-13 72.0
Msa0236520 AT2G37260.1 40.476 84 44 3 315 394 324 405 9.00e-13 70.9
Msa0236520 AT2G44745.1 47.619 63 32 1 332 394 140 201 4.17e-13 69.3
Msa0236520 AT4G31800.1 44.262 61 34 0 337 397 176 236 4.72e-13 70.9
Msa0236520 AT2G37260.3 55.738 61 25 2 338 398 86 144 4.90e-13 71.2
Msa0236520 AT2G37260.3 40.476 84 44 3 315 394 244 325 1.43e-12 69.7
Msa0236520 AT5G46350.1 48.387 62 31 1 337 398 183 243 4.91e-13 70.9
Msa0236520 AT2G37260.2 55.738 61 25 2 338 398 84 142 5.33e-13 70.9
Msa0236520 AT2G37260.2 40.476 84 44 3 315 394 242 323 1.44e-12 69.7
Msa0236520 AT4G26440.1 47.887 71 35 2 338 408 179 247 6.18e-13 72.0
Msa0236520 AT4G26440.1 38.372 86 52 1 332 417 367 451 5.99e-12 68.9
Msa0236520 AT5G45260.1 46.970 66 33 1 338 401 1209 1274 1.24e-12 71.6
Msa0236520 AT5G49520.1 46.667 60 31 1 338 397 222 280 1.36e-12 70.1
Msa0236520 AT1G69310.4 37.363 91 55 2 315 405 126 214 2.68e-12 68.2
Msa0236520 AT1G69310.2 37.363 91 55 2 315 405 126 214 2.68e-12 68.2
Msa0236520 AT1G69310.1 37.363 91 55 2 315 405 126 214 2.68e-12 68.2
Msa0236520 AT2G25000.2 42.623 61 35 0 337 397 103 163 4.07e-12 66.6
Msa0236520 AT2G25000.4 42.623 61 35 0 337 397 103 163 4.07e-12 66.6
Msa0236520 AT2G25000.3 42.623 61 35 0 337 397 125 185 5.06e-12 66.6
Msa0236520 AT2G40740.1 41.463 82 43 2 316 392 149 230 7.72e-12 66.6
Msa0236520 AT2G40740.3 41.463 82 43 2 316 392 158 239 9.33e-12 66.6
Msa0236520 AT2G25000.1 42.623 61 35 0 337 397 146 206 1.38e-11 65.9
Msa0236520 AT2G46130.1 38.750 80 48 1 315 394 8 86 2.25e-11 61.2
Msa0236520 AT4G39410.1 46.552 58 30 1 338 395 224 280 3.58e-11 65.1
Msa0236520 AT3G01970.1 46.154 65 32 2 338 400 66 129 4.21e-11 61.6
Msa0236520 AT5G13080.1 42.105 57 32 1 338 394 68 123 4.22e-11 61.6

Find 159 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCTTAAATGCTAGAAATT+TGG 0.075722 2_2:+9522678 Msa0236520:CDS
ACCCAAATTTCTAGCATTTA+AGG 0.127042 2_2:-9522680 None:intergenic
CTCTCTAATAGTTCTATTTC+TGG 0.157050 2_2:-9522625 None:intergenic
CATGAACACTAGTGTTTATC+AGG 0.198077 2_2:-9521358 Msa0236530:CDS
CTCCATGCCCACGGGTCTTT+TGG 0.209857 2_2:-9521971 None:intergenic
ATGAATCCAGTTTCAGAATA+AGG 0.224140 2_2:-9522781 None:intergenic
CCGTGGGCATGGAGGAAATA+TGG 0.249497 2_2:+9521980 Msa0236520:CDS
CGGATGTGGAGACCCTTTAA+TGG 0.271178 2_2:-9522011 None:intergenic
TCCTTAAATGCTAGAAATTT+GGG 0.273355 2_2:+9522679 Msa0236520:CDS
GGTGGGGATGGTGGTGGTCA+AGG 0.277140 2_2:-9521186 Msa0236530:CDS
GATAGTGTAGGTGGTGGTGG+CGG 0.292237 2_2:-9521156 Msa0236530:CDS
GATTACAGTGGCAGTGATAA+TGG 0.292582 2_2:-9521291 Msa0236530:CDS
GGGGATGGTGGTGGTCAAGG+GGG 0.302266 2_2:-9521183 Msa0236530:CDS
GTGGGGATGGTGGTGGTCAA+GGG 0.302668 2_2:-9521185 Msa0236530:CDS
TATTCTGAAACTGGATTCAT+TGG 0.302973 2_2:+9522784 Msa0236520:CDS
ATAGTTCTATTTCTGGATAA+AGG 0.309444 2_2:-9522618 None:intergenic
TAGAGGGAATGTGATGTTAT+TGG 0.309533 2_2:-9520952 None:intergenic
ATAGTGTAGGTGGTGGTGGC+GGG 0.318835 2_2:-9521155 Msa0236530:CDS
AACCTCCCTTATTCTGAAAC+TGG 0.323380 2_2:+9522775 Msa0236520:CDS
TGGGGATGGTGGTGGTCAAG+GGG 0.326902 2_2:-9521184 Msa0236530:CDS
ATGAAGTCATTTGGTTTAAG+TGG 0.330576 2_2:-9521041 None:intergenic
TGGGATAGTGTAGGTGGTGG+TGG 0.332732 2_2:-9521159 Msa0236530:CDS
TGCAACGCTACCACATTTAC+TGG 0.340291 2_2:+9520879 Msa0236520:CDS
AGTGTAGGTGGTGGTGGCGG+GGG 0.341815 2_2:-9521153 Msa0236530:CDS
GGGTATTGGAAAATTATAAT+TGG 0.342276 2_2:-9521399 Msa0236530:CDS
GGGATGGTGGTGGTCAAGGG+GGG 0.345552 2_2:-9521182 Msa0236530:CDS
TAGTGTAGGTGGTGGTGGCG+GGG 0.346368 2_2:-9521154 Msa0236530:CDS
CAAAGTGGTGTGACACTTAG+AGG 0.354737 2_2:-9520969 None:intergenic
ATAATTTGTGGGATATTGAT+TGG 0.356463 2_2:-9521612 Msa0236540:CDS
CACTATGCGGATCAAGAAAA+AGG 0.357686 2_2:+9521768 Msa0236520:CDS
TGCTCTTAGCAGATATGATT+GGG 0.361525 2_2:-9521559 Msa0236540:CDS
TTACACTCTGCGGAAGAAAC+TGG 0.365125 2_2:+9522490 Msa0236520:CDS
ACCCGTAACATTGCTACATT+GGG 0.366403 2_2:-9522737 None:intergenic
TCTAGATCTATGAAGTCATT+TGG 0.366608 2_2:-9521050 None:intergenic
AAATCCAGGTTCCCCTAGTA+TGG 0.366946 2_2:+9522531 Msa0236520:CDS
GTGCTTGTAGCAGATATGAT+AGG 0.367308 2_2:-9521332 Msa0236530:CDS
ATCTGCAACATCACCATACT+AGG 0.367397 2_2:-9522544 None:intergenic
ATCAATGCATGCAACATGTT+TGG 0.367904 2_2:-9521471 Msa0236530:CDS
ATCAATGCATGCAACATGTT+TGG 0.367904 2_2:-9521699 Msa0236540:CDS
TGATAGGGGTAGTGGTGGTC+GGG 0.373880 2_2:-9521316 Msa0236530:CDS
TCTGACCAAGCTGTTATGTT+TGG 0.377584 2_2:-9522838 None:intergenic
TTGGTCAGAAGATTATTTAA+TGG 0.378102 2_2:+9522852 Msa0236520:CDS
GGTTGGATGCACGATCAAAA+TGG 0.380288 2_2:-9521505 None:intergenic
GTTAGTGATGTGGGTGGGGA+TGG 0.386412 2_2:-9521198 Msa0236530:CDS
TCAATGCATGCAACATGTTT+GGG 0.386538 2_2:-9521470 Msa0236530:CDS
TCAATGCATGCAACATGTTT+GGG 0.386538 2_2:-9521698 Msa0236540:CDS
TGTTGTTGTCCAGCGGGTAT+TGG 0.401974 2_2:-9521413 Msa0236530:CDS
ATAATTGGCGGGATATTGAT+TGG 0.402825 2_2:-9521384 Msa0236530:CDS
TTGGTAGTGGTTTCGATTTG+AGG 0.403044 2_2:-9520933 None:intergenic
ATTACAGTGGCAGTGATAAT+GGG 0.403708 2_2:-9521290 Msa0236530:CDS
TTTAATAAGAATGTTGTTGT+TGG 0.409716 2_2:+9522436 Msa0236520:CDS
CAGCGCAAGTCACTGGAGAC+TGG 0.413600 2_2:+9522466 Msa0236520:CDS
GGATGTGGAGACCCTTTAAT+GGG 0.418234 2_2:-9522010 None:intergenic
CCCCAATGTAGCAATGTTAC+GGG 0.419952 2_2:+9522736 Msa0236520:CDS
TTGATTGATCAGCGAGAACC+TGG 0.424637 2_2:-9522591 None:intergenic
GTGCTCTTAGCAGATATGAT+TGG 0.424710 2_2:-9521560 Msa0236540:CDS
AGTGATGTGGGTGGGGATGG+TGG 0.428433 2_2:-9521195 Msa0236530:CDS
ATTGGGAAATTATAATTTGT+GGG 0.434731 2_2:-9521623 Msa0236540:CDS
AGTGGTGGGAATAGTGATGG+TGG 0.436219 2_2:-9521252 Msa0236530:CDS
ACAACATTCTTATTAAATGT+TGG 0.443200 2_2:-9522430 None:intergenic
CATTGGGAAATTATAATTTG+TGG 0.445048 2_2:-9521624 Msa0236540:CDS
CACCCGTAACATTGCTACAT+TGG 0.445193 2_2:-9522738 None:intergenic
TATAGCACACCAATGCCATT+TGG 0.445367 2_2:-9521931 None:intergenic
TGAATCCAGTTTCAGAATAA+GGG 0.447038 2_2:-9522780 None:intergenic
AGTGGGAGCTGAGGTGGGGA+TGG 0.450737 2_2:-9521096 None:intergenic
ATACTAGTGGGAGCTGAGGT+GGG 0.454923 2_2:-9521101 None:intergenic
AGCAGATATGATTGGGGTAG+TGG 0.455016 2_2:-9521552 Msa0236540:CDS
GAATGTGATGTTATTGGTAG+TGG 0.458828 2_2:-9520946 None:intergenic
GCCCCAATGTAGCAATGTTA+CGG 0.458952 2_2:+9522735 Msa0236520:CDS
ATGATAGGGGTAGTGGTGGT+CGG 0.463932 2_2:-9521317 Msa0236530:CDS
GATGTGGGTGGGGATGGTGG+TGG 0.464748 2_2:-9521192 Msa0236530:CDS
TAATGTTAGTGATGTGGGTG+GGG 0.465398 2_2:-9521202 Msa0236530:CDS
TACATCCCAGCGCAAGTCAC+TGG 0.469837 2_2:+9522459 Msa0236520:CDS
ATTGGAAAATTATAATTGGC+GGG 0.476395 2_2:-9521395 Msa0236530:CDS
CCATATTTCCTCCATGCCCA+CGG 0.476436 2_2:-9521980 None:intergenic
ATGGACTTCAAGTGCCTCAA+TGG 0.476923 2_2:+9522871 Msa0236520:CDS
CGTGGGCATGGAGGAAATAT+GGG 0.481905 2_2:+9521981 Msa0236520:CDS
TGAAGTCATTTGGTTTAAGT+GGG 0.485609 2_2:-9521040 None:intergenic
GTTTCGATTTGAGGTGGCGG+TGG 0.486220 2_2:-9520924 None:intergenic
ACCTGGGTATTGCTGCTCTC+CGG 0.486470 2_2:-9522574 None:intergenic
TGGCATTGGTGTGCTATATG+AGG 0.487449 2_2:+9521936 Msa0236520:CDS
GGGTGGGATAGTGTAGGTGG+TGG 0.487925 2_2:-9521162 Msa0236530:CDS
TTACCCTCTGTGGAAGAAGT+TGG 0.488537 2_2:+9522652 Msa0236520:CDS
CAGTCTCCAGTGACTTGCGC+TGG 0.491501 2_2:-9522465 None:intergenic
CATACTAGTGGGAGCTGAGG+TGG 0.495210 2_2:-9521102 None:intergenic
TGCTTGTAGCAGATATGATA+GGG 0.497057 2_2:-9521331 Msa0236530:CDS
ATCACCATACTAGGGGAACC+TGG 0.508434 2_2:-9522535 None:intergenic
GTGGGAGCTGAGGTGGGGAT+GGG 0.514412 2_2:-9521095 None:intergenic
TAGAAAACATAATAACCAAA+TGG 0.516057 2_2:+9521916 Msa0236520:intron
ACTTATATTGTAACATATGA+AGG 0.520110 2_2:+9522388 Msa0236520:CDS
TATTGGAAAATTATAATTGG+CGG 0.522883 2_2:-9521396 Msa0236530:CDS
GATGTTGCAGATCGATCATC+CGG 0.525110 2_2:+9522555 Msa0236520:CDS
ATATTTGTAAACCTCGGATG+TGG 0.527362 2_2:-9522025 None:intergenic
AGCAGATATGATAGGGGTAG+TGG 0.527593 2_2:-9521324 Msa0236530:CDS
TTCCAAAAGACCCGTGGGCA+TGG 0.527766 2_2:+9521969 Msa0236520:CDS
CGCATAGTGCAACCGATGGA+TGG 0.529058 2_2:-9521754 None:intergenic
AGTCTCCAGTGACTTGCGCT+GGG 0.530524 2_2:-9522464 None:intergenic
ACATAATAACCAAATGGCAT+TGG 0.531292 2_2:+9521922 Msa0236520:CDS
TCTACAAACATCACAAATCC+AGG 0.538062 2_2:+9522517 Msa0236520:CDS
TTGAATTTGTTGTTGTCCAG+CGG 0.540268 2_2:-9521420 Msa0236530:CDS
AGCGCAAGTCACTGGAGACT+GGG 0.541737 2_2:+9522467 Msa0236520:CDS
TATAATTTCCCAATGCACGC+TGG 0.543748 2_2:+9521632 Msa0236520:CDS
GATAGGGGTAGTGGTGGTCG+GGG 0.550830 2_2:-9521315 Msa0236530:CDS
GTTGGATGCACGATCAAAAT+GGG 0.551415 2_2:-9521504 None:intergenic
TGGCATACTAGTGGGAGCTG+AGG 0.554747 2_2:-9521105 None:intergenic
GGCGATAACTGATGGATGGT+TGG 0.556513 2_2:-9521522 None:intergenic
CATATTTCCTCCATGCCCAC+GGG 0.559003 2_2:-9521979 None:intergenic
AGTGTTAATGTTAGTGATGT+GGG 0.567585 2_2:-9521207 Msa0236530:CDS
TACTAGTGGGAGCTGAGGTG+GGG 0.568500 2_2:-9521100 None:intergenic
TGATACCAAACATAACAGCT+TGG 0.570214 2_2:+9522833 Msa0236520:CDS
GTGGTGGGAATAGTGATGGT+GGG 0.572780 2_2:-9521251 Msa0236530:CDS
GATTGGGGTAGTGGTGGTCG+AGG 0.574650 2_2:-9521543 Msa0236540:CDS
AGATTGTCCAGCAAGAAGAA+AGG 0.576880 2_2:+9522339 Msa0236520:CDS
GGGAGTGGTGGGAATAGTGA+TGG 0.578338 2_2:-9521255 Msa0236530:CDS
TGAATTTGTTGTTGTCCAGC+GGG 0.581001 2_2:-9521419 Msa0236530:CDS
TCTGCAACATCACCATACTA+GGG 0.581668 2_2:-9522543 None:intergenic
TTGATTGGTTTCATGAACAC+TGG 0.583186 2_2:-9521597 Msa0236540:CDS
GGAATATAGCGCCACCATTG+AGG 0.585327 2_2:-9522885 None:intergenic
GTGGTTTCGATTTGAGGTGG+CGG 0.594576 2_2:-9520927 None:intergenic
ATGAACACTGGTGTTTGTCA+TGG 0.597215 2_2:-9521585 Msa0236540:CDS
GTAGTGGTTTCGATTTGAGG+TGG 0.597682 2_2:-9520930 None:intergenic
AAAGTGGTGTGACACTTAGA+GGG 0.602585 2_2:-9520968 None:intergenic
GTGGTCGAGGCGATAACTGA+TGG 0.602965 2_2:-9521530 None:intergenic
TCCGGAGAGCAGCAATACCC+AGG 0.606173 2_2:+9522573 Msa0236520:CDS
ATGAACACTAGTGTTTATCA+GGG 0.614534 2_2:-9521357 Msa0236530:CDS
ATCCAGTTTCAGAATAAGGG+AGG 0.616537 2_2:-9522777 None:intergenic
ATATGCACGTTCAAAATGAG+TGG 0.616968 2_2:-9521729 None:intergenic
GACTTCAAGTGCCTCAATGG+TGG 0.617561 2_2:+9522874 Msa0236520:CDS
TTAATGTTAGTGATGTGGGT+GGG 0.619756 2_2:-9521203 Msa0236530:CDS
GAAGTCATTTGGTTTAAGTG+GGG 0.620194 2_2:-9521039 None:intergenic
GCTATTACAAATGTAGCACT+TGG 0.623098 2_2:+9522314 Msa0236520:CDS
TAGTGTTAATGTTAGTGATG+TGG 0.624324 2_2:-9521208 Msa0236530:CDS
TTACAGTGGCAGTGATAATG+GGG 0.626243 2_2:-9521289 Msa0236530:CDS
GTTGGTAGGACCAGTAAATG+TGG 0.630317 2_2:-9520889 None:intergenic
TTAAAGGGTCTCCACATCCG+AGG 0.642226 2_2:+9522014 Msa0236520:CDS
AGATATGATTGGGGTAGTGG+TGG 0.642708 2_2:-9521549 Msa0236540:CDS
ATGAGCTTCCAAAAGACCCG+TGG 0.645013 2_2:+9521963 Msa0236520:CDS
CAAAAGACCCGTGGGCATGG+AGG 0.646342 2_2:+9521972 Msa0236520:CDS
GATCCGCATAGTGCAACCGA+TGG 0.649098 2_2:-9521758 None:intergenic
GATCCAACTTCTTCCACAGA+GGG 0.650056 2_2:-9522655 None:intergenic
GTAAAATCATCATAGCAAAG+TGG 0.655809 2_2:-9520984 None:intergenic
CATCCATCGGTTGCACTATG+CGG 0.659476 2_2:+9521755 Msa0236520:CDS
AGATATGATAGGGGTAGTGG+TGG 0.663183 2_2:-9521321 Msa0236530:CDS
TCGAGGCGATAACTGATGGA+TGG 0.664288 2_2:-9521526 None:intergenic
AGAGAGTCACTTACCCTCTG+TGG 0.665669 2_2:+9522642 Msa0236520:CDS
TGATTGATCAGCGAGAACCT+GGG 0.667246 2_2:-9522590 None:intergenic
TGAGCTTCCAAAAGACCCGT+GGG 0.668568 2_2:+9521964 Msa0236520:CDS
GGCATTGGTGTGCTATATGA+GGG 0.674239 2_2:+9521937 Msa0236520:CDS
GCTTGTAGCAGATATGATAG+GGG 0.681969 2_2:-9521330 Msa0236530:CDS
ACGTGCATATAACCATCCAT+CGG 0.683151 2_2:+9521742 Msa0236520:CDS
GCTCTTAGCAGATATGATTG+GGG 0.685620 2_2:-9521558 Msa0236540:CDS
GGTGGTCGGGGTGATTACAG+TGG 0.694133 2_2:-9521303 Msa0236530:CDS
GTTAATGTTAGTGATGTGGG+TGG 0.694254 2_2:-9521204 Msa0236530:CDS
CCCGTAACATTGCTACATTG+GGG 0.713332 2_2:-9522736 None:intergenic
CTGCAACATCACCATACTAG+GGG 0.719168 2_2:-9522542 None:intergenic
GGATGCACGATCAAAATGGG+TGG 0.719593 2_2:-9521501 None:intergenic
TACAGTGGCAGTGATAATGG+GGG 0.720290 2_2:-9521288 Msa0236530:CDS
GGAGACTGGGTTACACTCTG+CGG 0.721711 2_2:+9522480 Msa0236520:CDS
TGATCCAACTTCTTCCACAG+AGG 0.749435 2_2:-9522656 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAATTATTGTTTATAATG+TGG - chr2_2:9522086-9522105 None:intergenic 15.0%
!!! ATTTTTAAAACATCAAAAAC+TGG + chr2_2:9522236-9522255 Msa0236520:intron 15.0%
!! CAAAATTATTGTTTATAATG+TGG - chr2_2:9522086-9522105 None:intergenic 15.0%
!!! ATTTTTAAAACATCAAAAAC+TGG + chr2_2:9522236-9522255 Msa0236520:intron 15.0%
!! TATTGGAAAATTATAATTGG+CGG - chr2_2:9521399-9521418 Msa0236530:CDS 20.0%
!!! ATTGGGAAATTATAATTTGT+GGG - chr2_2:9521626-9521645 Msa0236540:CDS 20.0%
!!! TGTTTTCTATAAGAAAAGAA+AGG - chr2_2:9521905-9521924 None:intergenic 20.0%
!! TAGAAAACATAATAACCAAA+TGG + chr2_2:9521916-9521935 Msa0236520:intron 20.0%
!!! TTTTGAATATTTGTAAACCT+CGG - chr2_2:9522034-9522053 None:intergenic 20.0%
!! ATTTCTTTCAACATCATTTA+TGG - chr2_2:9522274-9522293 None:intergenic 20.0%
!! ACTTATATTGTAACATATGA+AGG + chr2_2:9522388-9522407 Msa0236520:CDS 20.0%
!! ACAACATTCTTATTAAATGT+TGG - chr2_2:9522433-9522452 None:intergenic 20.0%
!! TTTAATAAGAATGTTGTTGT+TGG + chr2_2:9522436-9522455 Msa0236520:CDS 20.0%
!! TATTGGAAAATTATAATTGG+CGG - chr2_2:9521399-9521418 Msa0236530:CDS 20.0%
!!! ATTGGGAAATTATAATTTGT+GGG - chr2_2:9521626-9521645 Msa0236540:CDS 20.0%
!!! TGTTTTCTATAAGAAAAGAA+AGG - chr2_2:9521905-9521924 None:intergenic 20.0%
!! TAGAAAACATAATAACCAAA+TGG + chr2_2:9521916-9521935 Msa0236520:intron 20.0%
!!! TTTTGAATATTTGTAAACCT+CGG - chr2_2:9522034-9522053 None:intergenic 20.0%
!! ATTTCTTTCAACATCATTTA+TGG - chr2_2:9522274-9522293 None:intergenic 20.0%
!! ACTTATATTGTAACATATGA+AGG + chr2_2:9522388-9522407 Msa0236520:CDS 20.0%
!! ACAACATTCTTATTAAATGT+TGG - chr2_2:9522433-9522452 None:intergenic 20.0%
!! TTTAATAAGAATGTTGTTGT+TGG + chr2_2:9522436-9522455 Msa0236520:CDS 20.0%
! ATTGGAAAATTATAATTGGC+GGG - chr2_2:9521398-9521417 Msa0236530:CDS 25.0%
!!! GGGTATTGGAAAATTATAAT+TGG - chr2_2:9521402-9521421 Msa0236530:CDS 25.0%
!! ATAATTTGTGGGATATTGAT+TGG - chr2_2:9521615-9521634 Msa0236540:CDS 25.0%
! CATTGGGAAATTATAATTTG+TGG - chr2_2:9521627-9521646 Msa0236540:CDS 25.0%
! AAATCAATAAATGATGTTGC+AGG + chr2_2:9522290-9522309 Msa0236520:intron 25.0%
!!! ATAGTTCTATTTCTGGATAA+AGG - chr2_2:9522621-9522640 None:intergenic 25.0%
! ATCCTTAAATGCTAGAAATT+TGG + chr2_2:9522678-9522697 Msa0236520:CDS 25.0%
! TCCTTAAATGCTAGAAATTT+GGG + chr2_2:9522679-9522698 Msa0236520:CDS 25.0%
! TTGGTCAGAAGATTATTTAA+TGG + chr2_2:9522852-9522871 Msa0236520:CDS 25.0%
! ATTGGAAAATTATAATTGGC+GGG - chr2_2:9521398-9521417 Msa0236530:CDS 25.0%
!!! GGGTATTGGAAAATTATAAT+TGG - chr2_2:9521402-9521421 Msa0236530:CDS 25.0%
!! ATAATTTGTGGGATATTGAT+TGG - chr2_2:9521615-9521634 Msa0236540:CDS 25.0%
! CATTGGGAAATTATAATTTG+TGG - chr2_2:9521627-9521646 Msa0236540:CDS 25.0%
! AAATCAATAAATGATGTTGC+AGG + chr2_2:9522290-9522309 Msa0236520:intron 25.0%
!!! ATAGTTCTATTTCTGGATAA+AGG - chr2_2:9522621-9522640 None:intergenic 25.0%
! ATCCTTAAATGCTAGAAATT+TGG + chr2_2:9522678-9522697 Msa0236520:CDS 25.0%
! TCCTTAAATGCTAGAAATTT+GGG + chr2_2:9522679-9522698 Msa0236520:CDS 25.0%
! TTGGTCAGAAGATTATTTAA+TGG + chr2_2:9522852-9522871 Msa0236520:CDS 25.0%
! GGATTTTCAAAAATGTTGGT+AGG - chr2_2:9520906-9520925 None:intergenic 30.0%
GTAAAATCATCATAGCAAAG+TGG - chr2_2:9520987-9521006 None:intergenic 30.0%
! AAGAGACTGAACTATTTTCT+TGG - chr2_2:9521016-9521035 None:intergenic 30.0%
! TGAAGTCATTTGGTTTAAGT+GGG - chr2_2:9521043-9521062 None:intergenic 30.0%
! ATGAAGTCATTTGGTTTAAG+TGG - chr2_2:9521044-9521063 None:intergenic 30.0%
TCTAGATCTATGAAGTCATT+TGG - chr2_2:9521053-9521072 None:intergenic 30.0%
!!! TTGATTTTTGGCATACTAGT+GGG - chr2_2:9521116-9521135 Msa0236530:CDS 30.0%
!!! ATTGATTTTTGGCATACTAG+TGG - chr2_2:9521117-9521136 Msa0236530:CDS 30.0%
AGTGTTAATGTTAGTGATGT+GGG - chr2_2:9521210-9521229 Msa0236530:CDS 30.0%
TAGTGTTAATGTTAGTGATG+TGG - chr2_2:9521211-9521230 Msa0236530:CDS 30.0%
ATGAACACTAGTGTTTATCA+GGG - chr2_2:9521360-9521379 Msa0236530:CDS 30.0%
ACATAATAACCAAATGGCAT+TGG + chr2_2:9521922-9521941 Msa0236520:CDS 30.0%
! CTCTCTAATAGTTCTATTTC+TGG - chr2_2:9522628-9522647 None:intergenic 30.0%
!! ACCCAAATTTCTAGCATTTA+AGG - chr2_2:9522683-9522702 None:intergenic 30.0%
TGAATCCAGTTTCAGAATAA+GGG - chr2_2:9522783-9522802 None:intergenic 30.0%
ATGAATCCAGTTTCAGAATA+AGG - chr2_2:9522784-9522803 None:intergenic 30.0%
!! TATTCTGAAACTGGATTCAT+TGG + chr2_2:9522784-9522803 Msa0236520:CDS 30.0%
! GGATTTTCAAAAATGTTGGT+AGG - chr2_2:9520906-9520925 None:intergenic 30.0%
GTAAAATCATCATAGCAAAG+TGG - chr2_2:9520987-9521006 None:intergenic 30.0%
! AAGAGACTGAACTATTTTCT+TGG - chr2_2:9521016-9521035 None:intergenic 30.0%
! TGAAGTCATTTGGTTTAAGT+GGG - chr2_2:9521043-9521062 None:intergenic 30.0%
! ATGAAGTCATTTGGTTTAAG+TGG - chr2_2:9521044-9521063 None:intergenic 30.0%
TCTAGATCTATGAAGTCATT+TGG - chr2_2:9521053-9521072 None:intergenic 30.0%
!!! TTGATTTTTGGCATACTAGT+GGG - chr2_2:9521116-9521135 Msa0236530:CDS 30.0%
!!! ATTGATTTTTGGCATACTAG+TGG - chr2_2:9521117-9521136 Msa0236530:CDS 30.0%
AGTGTTAATGTTAGTGATGT+GGG - chr2_2:9521210-9521229 Msa0236530:CDS 30.0%
TAGTGTTAATGTTAGTGATG+TGG - chr2_2:9521211-9521230 Msa0236530:CDS 30.0%
ATGAACACTAGTGTTTATCA+GGG - chr2_2:9521360-9521379 Msa0236530:CDS 30.0%
ACATAATAACCAAATGGCAT+TGG + chr2_2:9521922-9521941 Msa0236520:CDS 30.0%
! CTCTCTAATAGTTCTATTTC+TGG - chr2_2:9522628-9522647 None:intergenic 30.0%
!! ACCCAAATTTCTAGCATTTA+AGG - chr2_2:9522683-9522702 None:intergenic 30.0%
TGAATCCAGTTTCAGAATAA+GGG - chr2_2:9522783-9522802 None:intergenic 30.0%
ATGAATCCAGTTTCAGAATA+AGG - chr2_2:9522784-9522803 None:intergenic 30.0%
!! TATTCTGAAACTGGATTCAT+TGG + chr2_2:9522784-9522803 Msa0236520:CDS 30.0%
!! CGGTGGATTTTCAAAAATGT+TGG - chr2_2:9520910-9520929 None:intergenic 35.0%
GAATGTGATGTTATTGGTAG+TGG - chr2_2:9520949-9520968 None:intergenic 35.0%
TAGAGGGAATGTGATGTTAT+TGG - chr2_2:9520955-9520974 None:intergenic 35.0%
! GAAGTCATTTGGTTTAAGTG+GGG - chr2_2:9521042-9521061 None:intergenic 35.0%
TTAATGTTAGTGATGTGGGT+GGG - chr2_2:9521206-9521225 Msa0236530:CDS 35.0%
ATTACAGTGGCAGTGATAAT+GGG - chr2_2:9521293-9521312 Msa0236530:CDS 35.0%
TGCTTGTAGCAGATATGATA+GGG - chr2_2:9521334-9521353 Msa0236530:CDS 35.0%
CATGAACACTAGTGTTTATC+AGG - chr2_2:9521361-9521380 Msa0236530:CDS 35.0%
ATAATTGGCGGGATATTGAT+TGG - chr2_2:9521387-9521406 Msa0236530:CDS 35.0%
! TATAATTTTCCAATACCCGC+TGG + chr2_2:9521404-9521423 Msa0236520:CDS 35.0%
!! TTGAATTTGTTGTTGTCCAG+CGG - chr2_2:9521423-9521442 Msa0236530:CDS 35.0%
TCAATGCATGCAACATGTTT+GGG - chr2_2:9521473-9521492 Msa0236530:CDS 35.0%
ATCAATGCATGCAACATGTT+TGG - chr2_2:9521474-9521493 Msa0236530:CDS 35.0%
TGCTCTTAGCAGATATGATT+GGG - chr2_2:9521562-9521581 Msa0236540:CDS 35.0%
!! TTGATTGGTTTCATGAACAC+TGG - chr2_2:9521372-9521391 Msa0236530:CDS 35.0%
TCAATGCATGCAACATGTTT+GGG - chr2_2:9521473-9521492 Msa0236530:CDS 35.0%
ATCAATGCATGCAACATGTT+TGG - chr2_2:9521474-9521493 Msa0236530:CDS 35.0%
ATATGCACGTTCAAAATGAG+TGG - chr2_2:9521732-9521751 None:intergenic 35.0%
TATGGGCAAAAACCCATTAA+AGG + chr2_2:9521998-9522017 Msa0236520:CDS 35.0%
ATGGGCAAAAACCCATTAAA+GGG + chr2_2:9521999-9522018 Msa0236520:CDS 35.0%
ATATTTGTAAACCTCGGATG+TGG - chr2_2:9522028-9522047 None:intergenic 35.0%
! CATCACTGTTTAAAACACGA+GGG - chr2_2:9522131-9522150 None:intergenic 35.0%
ATCCTTGTCAGTGCATATAA+TGG + chr2_2:9522163-9522182 Msa0236520:intron 35.0%
! TACCATTATATGCACTGACA+AGG - chr2_2:9522168-9522187 None:intergenic 35.0%
GCTATTACAAATGTAGCACT+TGG + chr2_2:9522314-9522333 Msa0236520:CDS 35.0%
! TTTTCAACCTTTCTTCTTGC+TGG - chr2_2:9522349-9522368 None:intergenic 35.0%
TCTACAAACATCACAAATCC+AGG + chr2_2:9522517-9522536 Msa0236520:CDS 35.0%
TGATACCAAACATAACAGCT+TGG + chr2_2:9522833-9522852 Msa0236520:CDS 35.0%
!! CGGTGGATTTTCAAAAATGT+TGG - chr2_2:9520910-9520929 None:intergenic 35.0%
GAATGTGATGTTATTGGTAG+TGG - chr2_2:9520949-9520968 None:intergenic 35.0%
TAGAGGGAATGTGATGTTAT+TGG - chr2_2:9520955-9520974 None:intergenic 35.0%
! GAAGTCATTTGGTTTAAGTG+GGG - chr2_2:9521042-9521061 None:intergenic 35.0%
TTAATGTTAGTGATGTGGGT+GGG - chr2_2:9521206-9521225 Msa0236530:CDS 35.0%
ATTACAGTGGCAGTGATAAT+GGG - chr2_2:9521293-9521312 Msa0236530:CDS 35.0%
TGCTTGTAGCAGATATGATA+GGG - chr2_2:9521334-9521353 Msa0236530:CDS 35.0%
CATGAACACTAGTGTTTATC+AGG - chr2_2:9521361-9521380 Msa0236530:CDS 35.0%
ATAATTGGCGGGATATTGAT+TGG - chr2_2:9521387-9521406 Msa0236530:CDS 35.0%
! TATAATTTTCCAATACCCGC+TGG + chr2_2:9521404-9521423 Msa0236520:CDS 35.0%
!! TTGAATTTGTTGTTGTCCAG+CGG - chr2_2:9521423-9521442 Msa0236530:CDS 35.0%
TCAATGCATGCAACATGTTT+GGG - chr2_2:9521473-9521492 Msa0236530:CDS 35.0%
ATCAATGCATGCAACATGTT+TGG - chr2_2:9521474-9521493 Msa0236530:CDS 35.0%
TGCTCTTAGCAGATATGATT+GGG - chr2_2:9521562-9521581 Msa0236540:CDS 35.0%
!! TTGATTGGTTTCATGAACAC+TGG - chr2_2:9521372-9521391 Msa0236530:CDS 35.0%
TCAATGCATGCAACATGTTT+GGG - chr2_2:9521473-9521492 Msa0236530:CDS 35.0%
ATCAATGCATGCAACATGTT+TGG - chr2_2:9521474-9521493 Msa0236530:CDS 35.0%
ATATGCACGTTCAAAATGAG+TGG - chr2_2:9521732-9521751 None:intergenic 35.0%
TATGGGCAAAAACCCATTAA+AGG + chr2_2:9521998-9522017 Msa0236520:CDS 35.0%
ATGGGCAAAAACCCATTAAA+GGG + chr2_2:9521999-9522018 Msa0236520:CDS 35.0%
ATATTTGTAAACCTCGGATG+TGG - chr2_2:9522028-9522047 None:intergenic 35.0%
! CATCACTGTTTAAAACACGA+GGG - chr2_2:9522131-9522150 None:intergenic 35.0%
ATCCTTGTCAGTGCATATAA+TGG + chr2_2:9522163-9522182 Msa0236520:intron 35.0%
! TACCATTATATGCACTGACA+AGG - chr2_2:9522168-9522187 None:intergenic 35.0%
GCTATTACAAATGTAGCACT+TGG + chr2_2:9522314-9522333 Msa0236520:CDS 35.0%
! TTTTCAACCTTTCTTCTTGC+TGG - chr2_2:9522349-9522368 None:intergenic 35.0%
TCTACAAACATCACAAATCC+AGG + chr2_2:9522517-9522536 Msa0236520:CDS 35.0%
TGATACCAAACATAACAGCT+TGG + chr2_2:9522833-9522852 Msa0236520:CDS 35.0%
!! TTGGTAGTGGTTTCGATTTG+AGG - chr2_2:9520936-9520955 None:intergenic 40.0%
AAAGTGGTGTGACACTTAGA+GGG - chr2_2:9520971-9520990 None:intergenic 40.0%
!!! GTGGTGGTGGTATTGATTTT+TGG - chr2_2:9521128-9521147 Msa0236530:CDS 40.0%
TAATGTTAGTGATGTGGGTG+GGG - chr2_2:9521205-9521224 Msa0236530:CDS 40.0%
GTTAATGTTAGTGATGTGGG+TGG - chr2_2:9521207-9521226 Msa0236530:CDS 40.0%
!! TGATAATGGGGGTAATGGTA+GGG - chr2_2:9521280-9521299 Msa0236530:CDS 40.0%
! TTACAGTGGCAGTGATAATG+GGG - chr2_2:9521292-9521311 Msa0236530:CDS 40.0%
GATTACAGTGGCAGTGATAA+TGG - chr2_2:9521294-9521313 Msa0236530:CDS 40.0%
GCTTGTAGCAGATATGATAG+GGG - chr2_2:9521333-9521352 Msa0236530:CDS 40.0%
GTGCTTGTAGCAGATATGAT+AGG - chr2_2:9521335-9521354 Msa0236530:CDS 40.0%
!! TGAATTTGTTGTTGTCCAGC+GGG - chr2_2:9521422-9521441 Msa0236530:CDS 40.0%
GTTGGATGCACGATCAAAAT+GGG - chr2_2:9521507-9521526 None:intergenic 40.0%
GCTCTTAGCAGATATGATTG+GGG - chr2_2:9521561-9521580 Msa0236540:CDS 40.0%
GTGCTCTTAGCAGATATGAT+TGG - chr2_2:9521563-9521582 Msa0236540:CDS 40.0%
ATGAACACTGGTGTTTGTCA+TGG - chr2_2:9521588-9521607 Msa0236540:CDS 40.0%
TATAATTTCCCAATGCACGC+TGG + chr2_2:9521632-9521651 Msa0236520:CDS 40.0%
ACGTGCATATAACCATCCAT+CGG + chr2_2:9521742-9521761 Msa0236520:CDS 40.0%
CACTATGCGGATCAAGAAAA+AGG + chr2_2:9521768-9521787 Msa0236520:CDS 40.0%
TATAGCACACCAATGCCATT+TGG - chr2_2:9521934-9521953 None:intergenic 40.0%
! CCATCACTGTTTAAAACACG+AGG - chr2_2:9522132-9522151 None:intergenic 40.0%
!! CCTCGTGTTTTAAACAGTGA+TGG + chr2_2:9522129-9522148 Msa0236520:intron 40.0%
AGATTGTCCAGCAAGAAGAA+AGG + chr2_2:9522339-9522358 Msa0236520:CDS 40.0%
TCTGCAACATCACCATACTA+GGG - chr2_2:9522546-9522565 None:intergenic 40.0%
ATCTGCAACATCACCATACT+AGG - chr2_2:9522547-9522566 None:intergenic 40.0%
ACCCGTAACATTGCTACATT+GGG - chr2_2:9522740-9522759 None:intergenic 40.0%
!! AACCTCCCTTATTCTGAAAC+TGG + chr2_2:9522775-9522794 Msa0236520:CDS 40.0%
ATCCAGTTTCAGAATAAGGG+AGG - chr2_2:9522780-9522799 None:intergenic 40.0%
TCTGACCAAGCTGTTATGTT+TGG - chr2_2:9522841-9522860 None:intergenic 40.0%
!! TTGGTAGTGGTTTCGATTTG+AGG - chr2_2:9520936-9520955 None:intergenic 40.0%
AAAGTGGTGTGACACTTAGA+GGG - chr2_2:9520971-9520990 None:intergenic 40.0%
!!! GTGGTGGTGGTATTGATTTT+TGG - chr2_2:9521128-9521147 Msa0236530:CDS 40.0%
TAATGTTAGTGATGTGGGTG+GGG - chr2_2:9521205-9521224 Msa0236530:CDS 40.0%
GTTAATGTTAGTGATGTGGG+TGG - chr2_2:9521207-9521226 Msa0236530:CDS 40.0%
!! TGATAATGGGGGTAATGGTA+GGG - chr2_2:9521280-9521299 Msa0236530:CDS 40.0%
! TTACAGTGGCAGTGATAATG+GGG - chr2_2:9521292-9521311 Msa0236530:CDS 40.0%
GATTACAGTGGCAGTGATAA+TGG - chr2_2:9521294-9521313 Msa0236530:CDS 40.0%
GCTTGTAGCAGATATGATAG+GGG - chr2_2:9521333-9521352 Msa0236530:CDS 40.0%
GTGCTTGTAGCAGATATGAT+AGG - chr2_2:9521335-9521354 Msa0236530:CDS 40.0%
!! TGAATTTGTTGTTGTCCAGC+GGG - chr2_2:9521422-9521441 Msa0236530:CDS 40.0%
GTTGGATGCACGATCAAAAT+GGG - chr2_2:9521507-9521526 None:intergenic 40.0%
GCTCTTAGCAGATATGATTG+GGG - chr2_2:9521561-9521580 Msa0236540:CDS 40.0%
GTGCTCTTAGCAGATATGAT+TGG - chr2_2:9521563-9521582 Msa0236540:CDS 40.0%
ATGAACACTGGTGTTTGTCA+TGG - chr2_2:9521588-9521607 Msa0236540:CDS 40.0%
TATAATTTCCCAATGCACGC+TGG + chr2_2:9521632-9521651 Msa0236520:CDS 40.0%
ACGTGCATATAACCATCCAT+CGG + chr2_2:9521742-9521761 Msa0236520:CDS 40.0%
CACTATGCGGATCAAGAAAA+AGG + chr2_2:9521768-9521787 Msa0236520:CDS 40.0%
TATAGCACACCAATGCCATT+TGG - chr2_2:9521934-9521953 None:intergenic 40.0%
! CCATCACTGTTTAAAACACG+AGG - chr2_2:9522132-9522151 None:intergenic 40.0%
!! CCTCGTGTTTTAAACAGTGA+TGG + chr2_2:9522129-9522148 Msa0236520:intron 40.0%
AGATTGTCCAGCAAGAAGAA+AGG + chr2_2:9522339-9522358 Msa0236520:CDS 40.0%
TCTGCAACATCACCATACTA+GGG - chr2_2:9522546-9522565 None:intergenic 40.0%
ATCTGCAACATCACCATACT+AGG - chr2_2:9522547-9522566 None:intergenic 40.0%
ACCCGTAACATTGCTACATT+GGG - chr2_2:9522740-9522759 None:intergenic 40.0%
!! AACCTCCCTTATTCTGAAAC+TGG + chr2_2:9522775-9522794 Msa0236520:CDS 40.0%
ATCCAGTTTCAGAATAAGGG+AGG - chr2_2:9522780-9522799 None:intergenic 40.0%
TCTGACCAAGCTGTTATGTT+TGG - chr2_2:9522841-9522860 None:intergenic 40.0%
TGCAACGCTACCACATTTAC+TGG + chr2_2:9520879-9520898 Msa0236520:CDS 45.0%
! GTTGGTAGGACCAGTAAATG+TGG - chr2_2:9520892-9520911 None:intergenic 45.0%
! GTAGTGGTTTCGATTTGAGG+TGG - chr2_2:9520933-9520952 None:intergenic 45.0%
CAAAGTGGTGTGACACTTAG+AGG - chr2_2:9520972-9520991 None:intergenic 45.0%
! ATAATGGGGGTAATGGTAGG+GGG - chr2_2:9521278-9521297 Msa0236530:CDS 45.0%
!! GATAATGGGGGTAATGGTAG+GGG - chr2_2:9521279-9521298 Msa0236530:CDS 45.0%
!! GTGATAATGGGGGTAATGGT+AGG - chr2_2:9521281-9521300 Msa0236530:CDS 45.0%
!! TACAGTGGCAGTGATAATGG+GGG - chr2_2:9521291-9521310 Msa0236530:CDS 45.0%
! AGATATGATAGGGGTAGTGG+TGG - chr2_2:9521324-9521343 Msa0236530:CDS 45.0%
AGCAGATATGATAGGGGTAG+TGG - chr2_2:9521327-9521346 Msa0236530:CDS 45.0%
GGTTGGATGCACGATCAAAA+TGG - chr2_2:9521508-9521527 None:intergenic 45.0%
! AGATATGATTGGGGTAGTGG+TGG - chr2_2:9521552-9521571 Msa0236540:CDS 45.0%
AGCAGATATGATTGGGGTAG+TGG - chr2_2:9521555-9521574 Msa0236540:CDS 45.0%
! GTTTTTGTCCAGCGTGCATT+GGG - chr2_2:9521643-9521662 Msa0236540:CDS 45.0%
!! TGTTTTTGTCCAGCGTGCAT+TGG - chr2_2:9521644-9521663 Msa0236540:CDS 45.0%
!! TGGCATTGGTGTGCTATATG+AGG + chr2_2:9521936-9521955 Msa0236520:CDS 45.0%
!! GGCATTGGTGTGCTATATGA+GGG + chr2_2:9521937-9521956 Msa0236520:CDS 45.0%
GGATGTGGAGACCCTTTAAT+GGG - chr2_2:9522013-9522032 None:intergenic 45.0%
!! AGGGTGCGAGTGTTTGTTTT+AGG - chr2_2:9522112-9522131 None:intergenic 45.0%
TTACACTCTGCGGAAGAAAC+TGG + chr2_2:9522490-9522509 Msa0236520:CDS 45.0%
AAATCCAGGTTCCCCTAGTA+TGG + chr2_2:9522531-9522550 Msa0236520:CDS 45.0%
CTGCAACATCACCATACTAG+GGG - chr2_2:9522545-9522564 None:intergenic 45.0%
GATGTTGCAGATCGATCATC+CGG + chr2_2:9522555-9522574 Msa0236520:CDS 45.0%
TGATTGATCAGCGAGAACCT+GGG - chr2_2:9522593-9522612 None:intergenic 45.0%
TTGATTGATCAGCGAGAACC+TGG - chr2_2:9522594-9522613 None:intergenic 45.0%
TTACCCTCTGTGGAAGAAGT+TGG + chr2_2:9522652-9522671 Msa0236520:CDS 45.0%
GATCCAACTTCTTCCACAGA+GGG - chr2_2:9522658-9522677 None:intergenic 45.0%
TGATCCAACTTCTTCCACAG+AGG - chr2_2:9522659-9522678 None:intergenic 45.0%
GCCCCAATGTAGCAATGTTA+CGG + chr2_2:9522735-9522754 Msa0236520:CDS 45.0%
CCCGTAACATTGCTACATTG+GGG - chr2_2:9522739-9522758 None:intergenic 45.0%
CCCCAATGTAGCAATGTTAC+GGG + chr2_2:9522736-9522755 Msa0236520:CDS 45.0%
CACCCGTAACATTGCTACAT+TGG - chr2_2:9522741-9522760 None:intergenic 45.0%
ATGGACTTCAAGTGCCTCAA+TGG + chr2_2:9522871-9522890 Msa0236520:CDS 45.0%
TGCAACGCTACCACATTTAC+TGG + chr2_2:9520879-9520898 Msa0236520:CDS 45.0%
! GTTGGTAGGACCAGTAAATG+TGG - chr2_2:9520892-9520911 None:intergenic 45.0%
! GTAGTGGTTTCGATTTGAGG+TGG - chr2_2:9520933-9520952 None:intergenic 45.0%
CAAAGTGGTGTGACACTTAG+AGG - chr2_2:9520972-9520991 None:intergenic 45.0%
! ATAATGGGGGTAATGGTAGG+GGG - chr2_2:9521278-9521297 Msa0236530:CDS 45.0%
!! GATAATGGGGGTAATGGTAG+GGG - chr2_2:9521279-9521298 Msa0236530:CDS 45.0%
!! GTGATAATGGGGGTAATGGT+AGG - chr2_2:9521281-9521300 Msa0236530:CDS 45.0%
!! TACAGTGGCAGTGATAATGG+GGG - chr2_2:9521291-9521310 Msa0236530:CDS 45.0%
! AGATATGATAGGGGTAGTGG+TGG - chr2_2:9521324-9521343 Msa0236530:CDS 45.0%
AGCAGATATGATAGGGGTAG+TGG - chr2_2:9521327-9521346 Msa0236530:CDS 45.0%
GGTTGGATGCACGATCAAAA+TGG - chr2_2:9521508-9521527 None:intergenic 45.0%
! AGATATGATTGGGGTAGTGG+TGG - chr2_2:9521552-9521571 Msa0236540:CDS 45.0%
AGCAGATATGATTGGGGTAG+TGG - chr2_2:9521555-9521574 Msa0236540:CDS 45.0%
! GTTTTTGTCCAGCGTGCATT+GGG - chr2_2:9521643-9521662 Msa0236540:CDS 45.0%
!! TGTTTTTGTCCAGCGTGCAT+TGG - chr2_2:9521644-9521663 Msa0236540:CDS 45.0%
!! TGGCATTGGTGTGCTATATG+AGG + chr2_2:9521936-9521955 Msa0236520:CDS 45.0%
!! GGCATTGGTGTGCTATATGA+GGG + chr2_2:9521937-9521956 Msa0236520:CDS 45.0%
GGATGTGGAGACCCTTTAAT+GGG - chr2_2:9522013-9522032 None:intergenic 45.0%
!! AGGGTGCGAGTGTTTGTTTT+AGG - chr2_2:9522112-9522131 None:intergenic 45.0%
TTACACTCTGCGGAAGAAAC+TGG + chr2_2:9522490-9522509 Msa0236520:CDS 45.0%
AAATCCAGGTTCCCCTAGTA+TGG + chr2_2:9522531-9522550 Msa0236520:CDS 45.0%
CTGCAACATCACCATACTAG+GGG - chr2_2:9522545-9522564 None:intergenic 45.0%
GATGTTGCAGATCGATCATC+CGG + chr2_2:9522555-9522574 Msa0236520:CDS 45.0%
TGATTGATCAGCGAGAACCT+GGG - chr2_2:9522593-9522612 None:intergenic 45.0%
TTGATTGATCAGCGAGAACC+TGG - chr2_2:9522594-9522613 None:intergenic 45.0%
TTACCCTCTGTGGAAGAAGT+TGG + chr2_2:9522652-9522671 Msa0236520:CDS 45.0%
GATCCAACTTCTTCCACAGA+GGG - chr2_2:9522658-9522677 None:intergenic 45.0%
TGATCCAACTTCTTCCACAG+AGG - chr2_2:9522659-9522678 None:intergenic 45.0%
GCCCCAATGTAGCAATGTTA+CGG + chr2_2:9522735-9522754 Msa0236520:CDS 45.0%
CCCGTAACATTGCTACATTG+GGG - chr2_2:9522739-9522758 None:intergenic 45.0%
CCCCAATGTAGCAATGTTAC+GGG + chr2_2:9522736-9522755 Msa0236520:CDS 45.0%
CACCCGTAACATTGCTACAT+TGG - chr2_2:9522741-9522760 None:intergenic 45.0%
ATGGACTTCAAGTGCCTCAA+TGG + chr2_2:9522871-9522890 Msa0236520:CDS 45.0%
! GTGGTTTCGATTTGAGGTGG+CGG - chr2_2:9520930-9520949 None:intergenic 50.0%
ATACTAGTGGGAGCTGAGGT+GGG - chr2_2:9521104-9521123 None:intergenic 50.0%
! GTGGTGGGAATAGTGATGGT+GGG - chr2_2:9521254-9521273 Msa0236530:CDS 50.0%
! AGTGGTGGGAATAGTGATGG+TGG - chr2_2:9521255-9521274 Msa0236530:CDS 50.0%
!! GGCAGTGATAATGGGGGTAA+TGG - chr2_2:9521285-9521304 Msa0236530:CDS 50.0%
! ATGATAGGGGTAGTGGTGGT+CGG - chr2_2:9521320-9521339 Msa0236530:CDS 50.0%
TGTTGTTGTCCAGCGGGTAT+TGG - chr2_2:9521416-9521435 Msa0236530:CDS 50.0%
GGATGCACGATCAAAATGGG+TGG - chr2_2:9521504-9521523 None:intergenic 50.0%
! GGCGATAACTGATGGATGGT+TGG - chr2_2:9521525-9521544 None:intergenic 50.0%
TCGAGGCGATAACTGATGGA+TGG - chr2_2:9521529-9521548 None:intergenic 50.0%
! CATCCATCGGTTGCACTATG+CGG + chr2_2:9521755-9521774 Msa0236520:CDS 50.0%
ATGAGCTTCCAAAAGACCCG+TGG + chr2_2:9521963-9521982 Msa0236520:CDS 50.0%
TGAGCTTCCAAAAGACCCGT+GGG + chr2_2:9521964-9521983 Msa0236520:CDS 50.0%
CATATTTCCTCCATGCCCAC+GGG - chr2_2:9521982-9522001 None:intergenic 50.0%
CCATATTTCCTCCATGCCCA+CGG - chr2_2:9521983-9522002 None:intergenic 50.0%
CGTGGGCATGGAGGAAATAT+GGG + chr2_2:9521981-9522000 Msa0236520:CDS 50.0%
CGGATGTGGAGACCCTTTAA+TGG - chr2_2:9522014-9522033 None:intergenic 50.0%
TTAAAGGGTCTCCACATCCG+AGG + chr2_2:9522014-9522033 Msa0236520:CDS 50.0%
ATCACCATACTAGGGGAACC+TGG - chr2_2:9522538-9522557 None:intergenic 50.0%
AGAGAGTCACTTACCCTCTG+TGG + chr2_2:9522642-9522661 Msa0236520:CDS 50.0%
GACTTCAAGTGCCTCAATGG+TGG + chr2_2:9522874-9522893 Msa0236520:CDS 50.0%
GGAATATAGCGCCACCATTG+AGG - chr2_2:9522888-9522907 None:intergenic 50.0%
! GTGGTTTCGATTTGAGGTGG+CGG - chr2_2:9520930-9520949 None:intergenic 50.0%
ATACTAGTGGGAGCTGAGGT+GGG - chr2_2:9521104-9521123 None:intergenic 50.0%
! GTGGTGGGAATAGTGATGGT+GGG - chr2_2:9521254-9521273 Msa0236530:CDS 50.0%
! AGTGGTGGGAATAGTGATGG+TGG - chr2_2:9521255-9521274 Msa0236530:CDS 50.0%
!! GGCAGTGATAATGGGGGTAA+TGG - chr2_2:9521285-9521304 Msa0236530:CDS 50.0%
! ATGATAGGGGTAGTGGTGGT+CGG - chr2_2:9521320-9521339 Msa0236530:CDS 50.0%
TGTTGTTGTCCAGCGGGTAT+TGG - chr2_2:9521416-9521435 Msa0236530:CDS 50.0%
GGATGCACGATCAAAATGGG+TGG - chr2_2:9521504-9521523 None:intergenic 50.0%
! GGCGATAACTGATGGATGGT+TGG - chr2_2:9521525-9521544 None:intergenic 50.0%
TCGAGGCGATAACTGATGGA+TGG - chr2_2:9521529-9521548 None:intergenic 50.0%
! CATCCATCGGTTGCACTATG+CGG + chr2_2:9521755-9521774 Msa0236520:CDS 50.0%
ATGAGCTTCCAAAAGACCCG+TGG + chr2_2:9521963-9521982 Msa0236520:CDS 50.0%
TGAGCTTCCAAAAGACCCGT+GGG + chr2_2:9521964-9521983 Msa0236520:CDS 50.0%
CATATTTCCTCCATGCCCAC+GGG - chr2_2:9521982-9522001 None:intergenic 50.0%
CCATATTTCCTCCATGCCCA+CGG - chr2_2:9521983-9522002 None:intergenic 50.0%
CGTGGGCATGGAGGAAATAT+GGG + chr2_2:9521981-9522000 Msa0236520:CDS 50.0%
CGGATGTGGAGACCCTTTAA+TGG - chr2_2:9522014-9522033 None:intergenic 50.0%
TTAAAGGGTCTCCACATCCG+AGG + chr2_2:9522014-9522033 Msa0236520:CDS 50.0%
ATCACCATACTAGGGGAACC+TGG - chr2_2:9522538-9522557 None:intergenic 50.0%
AGAGAGTCACTTACCCTCTG+TGG + chr2_2:9522642-9522661 Msa0236520:CDS 50.0%
GACTTCAAGTGCCTCAATGG+TGG + chr2_2:9522874-9522893 Msa0236520:CDS 50.0%
GGAATATAGCGCCACCATTG+AGG - chr2_2:9522888-9522907 None:intergenic 50.0%
! GTTTCGATTTGAGGTGGCGG+TGG - chr2_2:9520927-9520946 None:intergenic 55.0%
TACTAGTGGGAGCTGAGGTG+GGG - chr2_2:9521103-9521122 None:intergenic 55.0%
CATACTAGTGGGAGCTGAGG+TGG - chr2_2:9521105-9521124 None:intergenic 55.0%
TGGCATACTAGTGGGAGCTG+AGG - chr2_2:9521108-9521127 Msa0236530:CDS 55.0%
!! ATAGTGTAGGTGGTGGTGGC+GGG - chr2_2:9521158-9521177 Msa0236530:CDS 55.0%
!! GATAGTGTAGGTGGTGGTGG+CGG - chr2_2:9521159-9521178 Msa0236530:CDS 55.0%
! TGGGATAGTGTAGGTGGTGG+TGG - chr2_2:9521162-9521181 Msa0236530:CDS 55.0%
GTTAGTGATGTGGGTGGGGA+TGG - chr2_2:9521201-9521220 Msa0236530:CDS 55.0%
! GGGAGTGGTGGGAATAGTGA+TGG - chr2_2:9521258-9521277 Msa0236530:CDS 55.0%
GTAATGGTAGGGGGAGTGGT+GGG - chr2_2:9521269-9521288 Msa0236530:CDS 55.0%
! TGATAGGGGTAGTGGTGGTC+GGG - chr2_2:9521319-9521338 Msa0236530:CDS 55.0%
GTGGTCGAGGCGATAACTGA+TGG - chr2_2:9521533-9521552 Msa0236540:CDS 55.0%
CGCATAGTGCAACCGATGGA+TGG - chr2_2:9521757-9521776 None:intergenic 55.0%
GATCCGCATAGTGCAACCGA+TGG - chr2_2:9521761-9521780 None:intergenic 55.0%
TTCCAAAAGACCCGTGGGCA+TGG + chr2_2:9521969-9521988 Msa0236520:CDS 55.0%
CCGTGGGCATGGAGGAAATA+TGG + chr2_2:9521980-9521999 Msa0236520:CDS 55.0%
TACATCCCAGCGCAAGTCAC+TGG + chr2_2:9522459-9522478 Msa0236520:CDS 55.0%
! AGTCTCCAGTGACTTGCGCT+GGG - chr2_2:9522467-9522486 None:intergenic 55.0%
AGCGCAAGTCACTGGAGACT+GGG + chr2_2:9522467-9522486 Msa0236520:CDS 55.0%
GGAGACTGGGTTACACTCTG+CGG + chr2_2:9522480-9522499 Msa0236520:CDS 55.0%
! ACCTGGGTATTGCTGCTCTC+CGG - chr2_2:9522577-9522596 None:intergenic 55.0%
! GTTTCGATTTGAGGTGGCGG+TGG - chr2_2:9520927-9520946 None:intergenic 55.0%
TACTAGTGGGAGCTGAGGTG+GGG - chr2_2:9521103-9521122 None:intergenic 55.0%
CATACTAGTGGGAGCTGAGG+TGG - chr2_2:9521105-9521124 None:intergenic 55.0%
TGGCATACTAGTGGGAGCTG+AGG - chr2_2:9521108-9521127 Msa0236530:CDS 55.0%
!! ATAGTGTAGGTGGTGGTGGC+GGG - chr2_2:9521158-9521177 Msa0236530:CDS 55.0%
!! GATAGTGTAGGTGGTGGTGG+CGG - chr2_2:9521159-9521178 Msa0236530:CDS 55.0%
! TGGGATAGTGTAGGTGGTGG+TGG - chr2_2:9521162-9521181 Msa0236530:CDS 55.0%
GTTAGTGATGTGGGTGGGGA+TGG - chr2_2:9521201-9521220 Msa0236530:CDS 55.0%
! GGGAGTGGTGGGAATAGTGA+TGG - chr2_2:9521258-9521277 Msa0236530:CDS 55.0%
GTAATGGTAGGGGGAGTGGT+GGG - chr2_2:9521269-9521288 Msa0236530:CDS 55.0%
! TGATAGGGGTAGTGGTGGTC+GGG - chr2_2:9521319-9521338 Msa0236530:CDS 55.0%
GTGGTCGAGGCGATAACTGA+TGG - chr2_2:9521533-9521552 Msa0236540:CDS 55.0%
CGCATAGTGCAACCGATGGA+TGG - chr2_2:9521757-9521776 None:intergenic 55.0%
GATCCGCATAGTGCAACCGA+TGG - chr2_2:9521761-9521780 None:intergenic 55.0%
TTCCAAAAGACCCGTGGGCA+TGG + chr2_2:9521969-9521988 Msa0236520:CDS 55.0%
CCGTGGGCATGGAGGAAATA+TGG + chr2_2:9521980-9521999 Msa0236520:CDS 55.0%
TACATCCCAGCGCAAGTCAC+TGG + chr2_2:9522459-9522478 Msa0236520:CDS 55.0%
! AGTCTCCAGTGACTTGCGCT+GGG - chr2_2:9522467-9522486 None:intergenic 55.0%
AGCGCAAGTCACTGGAGACT+GGG + chr2_2:9522467-9522486 Msa0236520:CDS 55.0%
GGAGACTGGGTTACACTCTG+CGG + chr2_2:9522480-9522499 Msa0236520:CDS 55.0%
! ACCTGGGTATTGCTGCTCTC+CGG - chr2_2:9522577-9522596 None:intergenic 55.0%
!! TAGTGTAGGTGGTGGTGGCG+GGG - chr2_2:9521157-9521176 Msa0236530:CDS 60.0%
GGGTGGGATAGTGTAGGTGG+TGG - chr2_2:9521165-9521184 Msa0236530:CDS 60.0%
CAAGGGGGGTGGGATAGTGT+AGG - chr2_2:9521171-9521190 Msa0236530:CDS 60.0%
!! TGGGGATGGTGGTGGTCAAG+GGG - chr2_2:9521187-9521206 Msa0236530:CDS 60.0%
!! GTGGGGATGGTGGTGGTCAA+GGG - chr2_2:9521188-9521207 Msa0236530:CDS 60.0%
AGTGATGTGGGTGGGGATGG+TGG - chr2_2:9521198-9521217 Msa0236530:CDS 60.0%
! GGTAATGGTAGGGGGAGTGG+TGG - chr2_2:9521270-9521289 Msa0236530:CDS 60.0%
GGTGGTCGGGGTGATTACAG+TGG - chr2_2:9521306-9521325 Msa0236530:CDS 60.0%
! GATAGGGGTAGTGGTGGTCG+GGG - chr2_2:9521318-9521337 Msa0236530:CDS 60.0%
! GATTGGGGTAGTGGTGGTCG+AGG - chr2_2:9521546-9521565 Msa0236540:CDS 60.0%
! CTCCATGCCCACGGGTCTTT+TGG - chr2_2:9521974-9521993 None:intergenic 60.0%
CAAAAGACCCGTGGGCATGG+AGG + chr2_2:9521972-9521991 Msa0236520:CDS 60.0%
! CAGTCTCCAGTGACTTGCGC+TGG - chr2_2:9522468-9522487 None:intergenic 60.0%
CAGCGCAAGTCACTGGAGAC+TGG + chr2_2:9522466-9522485 Msa0236520:CDS 60.0%
TCCGGAGAGCAGCAATACCC+AGG + chr2_2:9522573-9522592 Msa0236520:CDS 60.0%
!! TAGTGTAGGTGGTGGTGGCG+GGG - chr2_2:9521157-9521176 Msa0236530:CDS 60.0%
GGGTGGGATAGTGTAGGTGG+TGG - chr2_2:9521165-9521184 Msa0236530:CDS 60.0%
CAAGGGGGGTGGGATAGTGT+AGG - chr2_2:9521171-9521190 Msa0236530:CDS 60.0%
!! TGGGGATGGTGGTGGTCAAG+GGG - chr2_2:9521187-9521206 Msa0236530:CDS 60.0%
!! GTGGGGATGGTGGTGGTCAA+GGG - chr2_2:9521188-9521207 Msa0236530:CDS 60.0%
AGTGATGTGGGTGGGGATGG+TGG - chr2_2:9521198-9521217 Msa0236530:CDS 60.0%
! GGTAATGGTAGGGGGAGTGG+TGG - chr2_2:9521270-9521289 Msa0236530:CDS 60.0%
GGTGGTCGGGGTGATTACAG+TGG - chr2_2:9521306-9521325 Msa0236530:CDS 60.0%
! GATAGGGGTAGTGGTGGTCG+GGG - chr2_2:9521318-9521337 Msa0236530:CDS 60.0%
! GATTGGGGTAGTGGTGGTCG+AGG - chr2_2:9521546-9521565 Msa0236540:CDS 60.0%
! CTCCATGCCCACGGGTCTTT+TGG - chr2_2:9521974-9521993 None:intergenic 60.0%
CAAAAGACCCGTGGGCATGG+AGG + chr2_2:9521972-9521991 Msa0236520:CDS 60.0%
! CAGTCTCCAGTGACTTGCGC+TGG - chr2_2:9522468-9522487 None:intergenic 60.0%
CAGCGCAAGTCACTGGAGAC+TGG + chr2_2:9522466-9522485 Msa0236520:CDS 60.0%
TCCGGAGAGCAGCAATACCC+AGG + chr2_2:9522573-9522592 Msa0236520:CDS 60.0%
GTGGGAGCTGAGGTGGGGAT+GGG - chr2_2:9521098-9521117 None:intergenic 65.0%
AGTGGGAGCTGAGGTGGGGA+TGG - chr2_2:9521099-9521118 None:intergenic 65.0%
!! AGTGTAGGTGGTGGTGGCGG+GGG - chr2_2:9521156-9521175 Msa0236530:CDS 65.0%
GGGGGGTGGGATAGTGTAGG+TGG - chr2_2:9521168-9521187 Msa0236530:CDS 65.0%
!! TGGTGGTGGTCAAGGGGGGT+GGG - chr2_2:9521181-9521200 Msa0236530:CDS 65.0%
!! ATGGTGGTGGTCAAGGGGGG+TGG - chr2_2:9521182-9521201 Msa0236530:CDS 65.0%
!! GGGATGGTGGTGGTCAAGGG+GGG - chr2_2:9521185-9521204 Msa0236530:CDS 65.0%
!! GGGGATGGTGGTGGTCAAGG+GGG - chr2_2:9521186-9521205 Msa0236530:CDS 65.0%
!! GGTGGGGATGGTGGTGGTCA+AGG - chr2_2:9521189-9521208 Msa0236530:CDS 65.0%
! GATGTGGGTGGGGATGGTGG+TGG - chr2_2:9521195-9521214 Msa0236530:CDS 65.0%
! GGGGGTAATGGTAGGGGGAG+TGG - chr2_2:9521273-9521292 Msa0236530:CDS 65.0%
GTGGGAGCTGAGGTGGGGAT+GGG - chr2_2:9521098-9521117 None:intergenic 65.0%
AGTGGGAGCTGAGGTGGGGA+TGG - chr2_2:9521099-9521118 None:intergenic 65.0%
!! AGTGTAGGTGGTGGTGGCGG+GGG - chr2_2:9521156-9521175 Msa0236530:CDS 65.0%
GGGGGGTGGGATAGTGTAGG+TGG - chr2_2:9521168-9521187 Msa0236530:CDS 65.0%
!! TGGTGGTGGTCAAGGGGGGT+GGG - chr2_2:9521181-9521200 Msa0236530:CDS 65.0%
!! ATGGTGGTGGTCAAGGGGGG+TGG - chr2_2:9521182-9521201 Msa0236530:CDS 65.0%
!! GGGATGGTGGTGGTCAAGGG+GGG - chr2_2:9521185-9521204 Msa0236530:CDS 65.0%
!! GGGGATGGTGGTGGTCAAGG+GGG - chr2_2:9521186-9521205 Msa0236530:CDS 65.0%
!! GGTGGGGATGGTGGTGGTCA+AGG - chr2_2:9521189-9521208 Msa0236530:CDS 65.0%
! GATGTGGGTGGGGATGGTGG+TGG - chr2_2:9521195-9521214 Msa0236530:CDS 65.0%
! GGGGGTAATGGTAGGGGGAG+TGG - chr2_2:9521273-9521292 Msa0236530:CDS 65.0%
GGCGGGGGAAGATGTGGTGG+TGG - chr2_2:9521141-9521160 Msa0236530:CDS 70.0%
!! GGTGGCGGGGGAAGATGTGG+TGG - chr2_2:9521144-9521163 Msa0236530:CDS 70.0%
!! GGTGGTGGCGGGGGAAGATG+TGG - chr2_2:9521147-9521166 Msa0236530:CDS 70.0%
GGCGGGGGAAGATGTGGTGG+TGG - chr2_2:9521141-9521160 Msa0236530:CDS 70.0%
!! GGTGGCGGGGGAAGATGTGG+TGG - chr2_2:9521144-9521163 Msa0236530:CDS 70.0%
!! GGTGGTGGCGGGGGAAGATG+TGG - chr2_2:9521147-9521166 Msa0236530:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 9520837 9522912 9520837 ID=Msa0236520;Name=Msa0236520
chr2_2 mRNA 9520837 9522912 9520837 ID=Msa0236520-mRNA-1;Parent=Msa0236520;Name=Msa0236520-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|556
chr2_2 exon 9520837 9521789 9520837 ID=Msa0236520-mRNA-1:exon:4113;Parent=Msa0236520-mRNA-1
chr2_2 exon 9521919 9522035 9521919 ID=Msa0236520-mRNA-1:exon:4114;Parent=Msa0236520-mRNA-1
chr2_2 exon 9522312 9522912 9522312 ID=Msa0236520-mRNA-1:exon:4115;Parent=Msa0236520-mRNA-1
chr2_2 CDS 9520837 9521789 9520837 ID=Msa0236520-mRNA-1:cds;Parent=Msa0236520-mRNA-1
chr2_2 CDS 9521919 9522035 9521919 ID=Msa0236520-mRNA-1:cds;Parent=Msa0236520-mRNA-1
chr2_2 CDS 9522312 9522912 9522312 ID=Msa0236520-mRNA-1:cds;Parent=Msa0236520-mRNA-1
Gene Sequence

>Msa0236520

ATGGATAATGATGATCGAGATCTCTTTTCTATTGTTCGTAGTTGCAACGCTACCACATTTACTGGTCCTACCAACATTTTTGAAAATCCACCGCCACCTCAAATCGAAACCACTACCAATAACATCACATTCCCTCTAAGTGTCACACCACTTTGCTATGATGATTTTACTTTTAACCAAGAAAATAGTTCAGTCTCTTTTGCCCCACTTAAACCAAATGACTTCATAGATCTAGATAAATTGATGATCAATTTCAATCCCATCCCCACCTCAGCTCCCACTAGTATGCCAAAAATCAATACCACCACCACATCTTCCCCCGCCACCACCACCTACACTATCCCACCCCCCTTGACCACCACCATCCCCACCCACATCACTAACATTAACACTAGTGTTCATATTATCAACACTCCCACCATCACTATTCCCACCACTCCCCCTACCATTACCCCCATTATCACTGCCACTGTAATCACCCCGACCACCACTACCCCTATCATATCTGCTACAAGCACTACCCTGATAAACACTAGTGTTCATGAAACCAATCAATATCCCGCCAATTATAATTTTCCAATACCCGCTGGACAACAACAAATTCAACAAAACATCAACAATCAAGTGTCTGTTCCCAAACATGTTGCATGCATTGATATCACAGCCACCCATTTTGATCGTGCATCCAACCATCCATCAGTTATCGCCTCGACCACCACTACCCCAATCATATCTGCTAAGAGCACTACCATGACAAACACCAGTGTTCATGAAACCAATCAATATCCCACAAATTATAATTTCCCAATGCACGCTGGACAAAAACAGATTCAACAAAACATCAACAATCAAGTGTCTGTTCCCAAACATGTTGCATGCATTGATATCACAACCACTCATTTTGAACGTGCATATAACCATCCATCGGTTGCACTATGCGGATCAAGAAAAAGAAAACATAATAACCAAATGGCATTGGTGTGCTATATGAGGGACGATGAGCTTCCAAAAGACCCGTGGGCATGGAGGAAATATGGGCAAAAACCCATTAAAGGGTCTCCACATCCGAGGAGCTATTACAAATGTAGCACTTGGTCAGATTGTCCAGCAAGAAGAAAGGTTGAAAAATGCAAAACTCAAGAGAACACTTATATTGTAACATATGAAGGAGAGCACAATCATGCAAAGCCAACATTTAATAAGAATGTTGTTGTTGGTACATCCCAGCGCAAGTCACTGGAGACTGGGTTACACTCTGCGGAAGAAACTGGATCATCTACAAACATCACAAATCCAGGTTCCCCTAGTATGGTGATGTTGCAGATCGATCATCCGGAGAGCAGCAATACCCAGGTTCTCGCTGATCAATCAAAAATCCTTTATCCAGAAATAGAACTATTAGAGAGTCACTTACCCTCTGTGGAAGAAGTTGGATCATCCTTAAATGCTAGAAATTTGGGTTCACATAACAAAATGATTATGCAATTTGATGAGCCCCAATGTAGCAATGTTACGGGTGTTGTCGATGACTCAAACCTCCCTTATTCTGAAACTGGATTCATTGGAAGCTTTGATGATAATGATGACATTTTGATACCAAACATAACAGCTTGGTCAGAAGATTATTTAATGGACTTCAAGTGCCTCAATGGTGGCGCTATATTCCCTTAG
Protein sequence

>Msa0236520

MDNDDRDLFSIVRSCNATTFTGPTNIFENPPPPQIETTTNNITFPLSVTPLCYDDFTFNQENSSVSFAPLKPNDFIDLDKLMINFNPIPTSAPTSMPKINTTTTSSPATTTYTIPPPLTTTIPTHITNINTSVHIINTPTITIPTTPPTITPIITATVITPTTTTPIISATSTTLINTSVHETNQYPANYNFPIPAGQQQIQQNINNQVSVPKHVACIDITATHFDRASNHPSVIASTTTTPIISAKSTTMTNTSVHETNQYPTNYNFPMHAGQKQIQQNINNQVSVPKHVACIDITTTHFERAYNHPSVALCGSRKRKHNNQMALVCYMRDDELPKDPWAWRKYGQKPIKGSPHPRSYYKCSTWSDCPARRKVEKCKTQENTYIVTYEGEHNHAKPTFNKNVVVGTSQRKSLETGLHSAEETGSSTNITNPGSPSMVMLQIDHPESSNTQVLADQSKILYPEIELLESHLPSVEEVGSSLNARNLGSHNKMIMQFDEPQCSNVTGVVDDSNLPYSETGFIGSFDDNDDILIPNITAWSEDYLMDFKCLNGGAIFP*