AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0236560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0236560 MtrunA17_Chr2g0289181 87.554 233 29 0 324 556 1 233 5.60e-151 432
Msa0236560 MtrunA17_Chr7g0266611 50.909 165 80 1 392 556 2 165 1.73e-38 139
Msa0236560 MtrunA17_Chr1g0202461 53.061 98 44 2 315 412 240 335 5.60e-29 118
Msa0236560 MtrunA17_Chr6g0470161 43.548 124 65 1 433 556 2 120 1.74e-27 107
Msa0236560 MtrunA17_Chr7g0248691 35.135 185 103 5 305 478 122 300 1.29e-26 110
Msa0236560 MtrunA17_Chr8g0348311 45.370 108 58 1 316 423 134 240 8.89e-26 108
Msa0236560 MtrunA17_Chr1g0184691 65.079 63 22 0 334 396 290 352 6.31e-24 103
Msa0236560 MtrunA17_Chr2g0293901 65.049 103 31 2 1 98 1 103 2.65e-23 97.8
Msa0236560 MtrunA17_Chr2g0293481 37.778 135 70 3 288 409 205 338 6.05e-23 102
Msa0236560 MtrunA17_Chr4g0071521 38.655 119 55 2 278 396 204 304 1.78e-22 98.6
Msa0236560 MtrunA17_Chr3g0139021 45.055 91 49 1 313 402 289 379 3.43e-22 99.0
Msa0236560 MtrunA17_Chr4g0053281 47.674 86 42 1 313 395 239 324 4.51e-22 97.8
Msa0236560 MtrunA17_Chr5g0401821 56.061 66 29 0 330 395 192 257 7.35e-22 95.5
Msa0236560 MtrunA17_Chr8g0387501 54.795 73 32 1 338 410 130 201 1.20e-21 95.1
Msa0236560 MtrunA17_Chr7g0228941 56.250 64 28 0 331 394 46 109 1.77e-21 90.1
Msa0236560 MtrunA17_Chr8g0379461 59.677 62 25 0 336 397 75 136 2.08e-21 93.6
Msa0236560 MtrunA17_Chr7g0270051 46.154 91 42 1 315 398 24 114 3.02e-21 93.6
Msa0236560 MtrunA17_Chr1g0147881 43.363 113 56 2 286 394 211 319 5.45e-21 94.4
Msa0236560 MtrunA17_Chr2g0284321 47.253 91 44 1 311 397 5 95 8.88e-21 91.3
Msa0236560 MtrunA17_Chr2g0319961 59.677 62 25 0 336 397 79 140 1.11e-20 92.0
Msa0236560 MtrunA17_Chr8g0366921 51.000 100 35 3 1 92 1 94 1.55e-18 87.0
Msa0236560 MtrunA17_Chr2g0302391 35.345 116 69 1 282 397 162 271 9.11e-18 85.9
Msa0236560 MtrunA17_Chr3g0099641 50.000 60 30 0 338 397 252 311 4.33e-17 84.0
Msa0236560 MtrunA17_Chr1g0194481 41.111 90 51 2 317 406 139 226 1.36e-16 81.3
Msa0236560 MtrunA17_Chr3g0136961 50.847 59 29 0 337 395 138 196 5.06e-16 79.0
Msa0236560 MtrunA17_Chr7g0263531 48.276 87 43 2 322 408 174 258 1.13e-15 79.3
Msa0236560 MtrunA17_Chr7g0263531 44.444 81 42 2 332 412 356 433 1.48e-14 75.9
Msa0236560 MtrunA17_Chr6g0470151 50.538 93 40 1 1 87 1 93 1.97e-15 78.2
Msa0236560 MtrunA17_Chr6g0470151 38.211 123 57 4 255 360 233 353 1.78e-14 75.5
Msa0236560 MtrunA17_Chr7g0270831 49.206 63 32 0 335 397 214 276 2.14e-15 78.6
Msa0236560 MtrunA17_Chr1g0150271 47.541 61 32 0 337 397 101 161 2.82e-15 75.9
Msa0236560 MtrunA17_Chr4g0051881 46.053 76 39 2 323 398 165 238 2.83e-15 77.4
Msa0236560 MtrunA17_Chr3g0101131 52.308 65 30 1 338 402 416 479 4.11e-15 78.6
Msa0236560 MtrunA17_Chr5g0445311 46.575 73 38 1 326 398 353 424 4.59e-15 78.2
Msa0236560 MtrunA17_Chr4g0042831 49.296 71 35 1 332 402 273 342 4.87e-15 77.0
Msa0236560 MtrunA17_Chr2g0322391 46.479 71 38 0 338 408 350 420 5.96e-15 77.8
Msa0236560 MtrunA17_Chr7g0218081 53.846 65 29 1 334 398 407 470 6.05e-15 77.8
Msa0236560 MtrunA17_Chr7g0218081 50.704 71 33 2 333 403 224 292 2.78e-14 75.5
Msa0236560 MtrunA17_Chr5g0418191 50.725 69 33 1 334 402 317 384 7.20e-15 77.0
Msa0236560 MtrunA17_Chr5g0418191 52.174 69 31 2 333 401 147 213 1.83e-13 72.8
Msa0236560 MtrunA17_Chr2g0288871 48.333 60 31 0 338 397 306 365 9.04e-15 77.0
Msa0236560 MtrunA17_Chr4g0060271 44.156 77 41 1 323 397 239 315 1.43e-14 76.6
Msa0236560 MtrunA17_Chr4g0075201 48.333 60 31 0 338 397 268 327 1.52e-14 76.3
Msa0236560 MtrunA17_Chr3g0106491 56.250 64 26 2 338 401 199 260 2.01e-14 75.9
Msa0236560 MtrunA17_Chr3g0106491 47.761 67 34 1 332 398 360 425 2.72e-13 72.4
Msa0236560 MtrunA17_Chr5g0432161 50.746 67 32 1 332 398 416 481 2.22e-14 75.9
Msa0236560 MtrunA17_Chr4g0001361 47.541 61 32 0 337 397 162 222 2.25e-14 74.3
Msa0236560 MtrunA17_Chr3g0079691 49.296 71 34 2 337 407 280 348 2.25e-14 76.3
Msa0236560 MtrunA17_Chr3g0079691 52.459 61 28 1 338 398 496 555 1.53e-13 73.6
Msa0236560 MtrunA17_Chr4g0025061 43.023 86 47 2 325 408 346 431 2.29e-14 76.3
Msa0236560 MtrunA17_Chr7g0238921 44.318 88 41 4 324 410 113 193 3.28e-14 73.9
Msa0236560 MtrunA17_Chr4g0025051 45.070 71 39 0 338 408 336 406 3.93e-14 75.1
Msa0236560 MtrunA17_Chr7g0216891 50.877 57 28 0 338 394 220 276 4.57e-14 75.1
Msa0236560 MtrunA17_Chr4g0051181 50.000 60 30 0 338 397 244 303 7.04e-14 74.3
Msa0236560 MtrunA17_Chr4g0068541 40.580 69 40 1 338 406 209 276 7.47e-14 73.6
Msa0236560 MtrunA17_Chr7g0249301 42.268 97 49 3 337 433 62 151 9.91e-14 73.2
Msa0236560 MtrunA17_Chr7g0249301 46.269 67 35 1 332 398 287 352 8.80e-13 70.1
Msa0236560 MtrunA17_Chr7g0249311 50.000 72 34 2 337 408 179 248 1.08e-13 73.9
Msa0236560 MtrunA17_Chr7g0249311 44.156 77 42 1 332 408 387 462 1.36e-13 73.6
Msa0236560 MtrunA17_Chr5g0447701 52.459 61 28 1 338 398 253 312 1.22e-13 72.8
Msa0236560 MtrunA17_Chr5g0447701 51.471 68 31 2 333 400 88 153 1.57e-13 72.4
Msa0236560 MtrunA17_Chr7g0243891 41.935 93 50 3 309 401 190 278 1.65e-13 73.2
Msa0236560 MtrunA17_Chr7g0243891 39.773 88 52 1 311 398 348 434 6.64e-12 68.2
Msa0236560 MtrunA17_Chr4g0074001 47.692 65 33 1 338 402 360 423 2.57e-13 72.4
Msa0236560 MtrunA17_Chr1g0188941 49.180 61 30 1 338 398 52 111 2.68e-13 66.6
Msa0236560 MtrunA17_Chr7g0270191 38.554 83 48 2 325 405 131 212 3.26e-13 70.5
Msa0236560 MtrunA17_Chr1g0150281 46.552 58 31 0 338 395 141 198 3.38e-13 70.5
Msa0236560 MtrunA17_Chr3g0129321 43.750 64 35 1 334 397 115 177 5.43e-13 68.2
Msa0236560 MtrunA17_Chr4g0004911 48.438 64 32 1 334 397 333 395 5.63e-13 71.2
Msa0236560 MtrunA17_Chr4g0004911 41.558 77 44 1 321 397 168 243 1.21e-11 67.0
Msa0236560 MtrunA17_Chr7g0266621 55.952 84 36 1 1 84 1 83 6.17e-13 69.7
Msa0236560 MtrunA17_Chr5g0443131 45.161 62 33 1 337 398 157 217 6.44e-13 69.7
Msa0236560 MtrunA17_Chr2g0333851 45.161 62 34 0 337 398 169 230 7.33e-13 69.7
Msa0236560 MtrunA17_Chr8g0335811 46.875 64 33 1 332 395 149 211 1.28e-12 67.8
Msa0236560 MtrunA17_Chr3g0129361 42.857 70 37 2 328 395 133 201 1.33e-12 67.4
Msa0236560 MtrunA17_Chr1g0150801 45.902 61 32 1 334 394 99 158 1.42e-12 65.9
Msa0236560 MtrunA17_Chr8g0383351 43.750 64 35 1 332 395 155 217 1.45e-12 67.4
Msa0236560 MtrunA17_Chr8g0383251 43.750 64 35 1 334 397 105 167 1.58e-12 66.2
Msa0236560 MtrunA17_Chr5g0418781 36.735 98 60 2 308 405 96 191 1.93e-12 68.2
Msa0236560 MtrunA17_Chr1g0189391 32.500 120 58 4 313 410 59 177 3.94e-12 67.8
Msa0236560 MtrunA17_Chr7g0224801 40.984 61 35 1 334 394 90 149 3.25e-11 62.4
Msa0236560 MtrunA17_Chr6g0485431 44.615 65 34 2 338 401 155 218 6.51e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0236560 AT4G01250.1 48.454 97 49 1 315 411 106 201 2.89e-26 109
Msa0236560 AT5G52830.1 52.041 98 45 2 315 412 144 239 2.90e-26 110
Msa0236560 AT3G04670.1 48.936 94 38 1 313 396 228 321 5.87e-24 103
Msa0236560 AT5G28650.1 47.872 94 39 1 313 396 228 321 9.99e-24 102
Msa0236560 AT4G31550.2 47.917 96 43 2 313 403 218 311 4.95e-23 100
Msa0236560 AT2G24570.1 58.571 70 29 0 334 403 240 309 5.71e-23 100
Msa0236560 AT4G31550.1 57.143 70 30 0 334 403 243 312 1.00e-22 99.8
Msa0236560 AT4G23550.1 47.253 91 47 1 321 411 124 213 2.81e-22 98.2
Msa0236560 AT2G23320.1 52.326 86 34 2 315 395 215 298 3.65e-22 97.8
Msa0236560 AT4G24240.1 49.495 99 43 2 302 395 243 339 6.97e-22 97.8
Msa0236560 AT2G34830.1 44.444 99 45 2 317 406 186 283 7.72e-22 98.6
Msa0236560 AT2G34830.2 44.444 99 45 2 317 406 195 292 8.27e-22 98.6
Msa0236560 AT2G30590.1 48.936 94 38 2 313 396 279 372 1.44e-21 97.4
Msa0236560 AT5G45050.1 46.667 90 47 1 317 406 1160 1248 2.59e-21 99.4
Msa0236560 AT5G45050.2 46.667 90 47 1 317 406 1132 1220 2.68e-21 99.0
Msa0236560 AT5G45050.4 46.667 90 47 1 317 406 1021 1109 2.71e-21 99.0
Msa0236560 AT1G30650.1 37.500 136 70 4 281 406 155 285 4.09e-21 96.7
Msa0236560 AT1G29280.1 58.065 62 26 0 336 397 73 134 3.29e-20 90.9
Msa0236560 AT3G58710.1 53.731 67 31 0 336 402 70 136 8.02e-20 90.1
Msa0236560 AT3G58710.2 53.731 67 31 0 336 402 69 135 8.26e-20 90.1
Msa0236560 AT3G01080.2 54.688 64 28 1 334 397 341 403 9.29e-16 80.5
Msa0236560 AT3G01080.2 41.237 97 46 4 333 424 201 291 6.64e-15 77.8
Msa0236560 AT3G01080.1 54.688 64 28 1 334 397 303 365 1.16e-15 79.7
Msa0236560 AT3G01080.1 41.237 97 46 4 333 424 163 253 7.63e-15 77.4
Msa0236560 AT1G69810.1 45.833 72 38 1 338 408 204 275 1.80e-15 79.0
Msa0236560 AT3G01080.3 41.237 97 46 4 333 424 201 291 1.81e-15 78.2
Msa0236560 AT1G69810.2 45.833 72 38 1 338 408 146 217 1.88e-15 78.2
Msa0236560 AT1G62300.1 50.000 60 30 0 338 397 313 372 2.37e-15 79.3
Msa0236560 AT4G22070.4 50.000 60 30 0 338 397 298 357 2.90e-15 79.3
Msa0236560 AT4G22070.3 50.000 60 30 0 338 397 298 357 2.90e-15 79.3
Msa0236560 AT4G22070.2 50.000 60 30 0 338 397 298 357 2.90e-15 79.3
Msa0236560 AT4G22070.1 50.000 60 30 0 338 397 298 357 2.90e-15 79.3
Msa0236560 AT4G04450.2 43.421 76 43 0 338 413 199 274 3.21e-15 78.6
Msa0236560 AT2G47260.1 41.667 96 49 3 317 406 148 242 3.43e-15 77.4
Msa0236560 AT2G03340.1 53.125 64 29 1 334 397 412 474 4.22e-15 78.6
Msa0236560 AT2G03340.1 48.571 70 34 2 333 402 246 313 3.35e-12 69.3
Msa0236560 AT4G04450.1 43.421 76 43 0 338 413 293 368 6.30e-15 78.2
Msa0236560 AT1G64000.1 39.286 84 48 2 313 394 88 170 1.23e-14 73.2
Msa0236560 AT5G15130.2 39.535 86 50 1 314 397 160 245 1.76e-14 76.6
Msa0236560 AT2G38470.1 51.515 66 31 1 332 397 357 421 2.13e-14 76.3
Msa0236560 AT2G38470.1 48.684 76 37 2 322 397 169 242 2.19e-14 76.3
Msa0236560 AT5G15130.1 39.535 86 50 1 314 397 202 287 2.22e-14 76.3
Msa0236560 AT1G13960.1 51.562 64 30 1 334 397 406 468 2.97e-14 75.9
Msa0236560 AT1G13960.1 50.769 65 30 2 333 397 225 287 4.44e-12 68.9
Msa0236560 AT1G18860.1 50.000 60 30 0 338 397 240 299 3.97e-14 75.5
Msa0236560 AT2G04880.1 51.667 60 28 1 338 397 308 366 4.31e-14 75.1
Msa0236560 AT2G04880.2 51.667 60 28 1 338 397 284 342 4.93e-14 75.1
Msa0236560 AT1G13960.2 51.562 64 30 1 334 397 253 315 5.32e-14 74.3
Msa0236560 AT1G13960.2 48.571 70 34 2 333 402 72 139 1.05e-11 67.0
Msa0236560 AT3G62340.1 47.619 63 30 2 338 399 119 179 6.31e-14 72.8
Msa0236560 AT1G29860.1 44.595 74 38 2 327 398 124 196 6.48e-14 72.8
Msa0236560 AT5G43290.1 57.895 57 23 1 338 394 115 170 7.10e-14 72.8
Msa0236560 AT1G68150.1 50.000 60 30 0 338 397 236 295 7.45e-14 73.9
Msa0236560 AT1G80840.1 43.548 62 35 0 337 398 146 207 8.06e-14 72.8
Msa0236560 AT5G07100.1 45.946 74 39 1 332 405 229 301 9.53e-14 72.8
Msa0236560 AT5G07100.1 44.118 68 37 1 330 397 110 176 1.16e-11 66.6
Msa0236560 AT4G26640.5 52.459 61 28 1 338 398 206 265 9.86e-14 73.6
Msa0236560 AT4G26640.6 52.459 61 28 1 338 398 206 265 9.86e-14 73.6
Msa0236560 AT4G26640.4 52.459 61 28 1 338 398 206 265 9.86e-14 73.6
Msa0236560 AT4G26640.3 52.459 61 28 1 338 398 206 265 9.86e-14 73.6
Msa0236560 AT4G26640.7 52.459 61 28 1 338 398 342 401 9.90e-14 74.3
Msa0236560 AT4G26640.2 52.459 61 28 1 338 398 382 441 1.02e-13 74.3
Msa0236560 AT4G26640.1 52.459 61 28 1 338 398 310 369 1.15e-13 73.9
Msa0236560 AT4G18170.1 45.946 74 37 2 327 398 160 232 1.19e-13 72.8
Msa0236560 AT5G26170.1 50.000 62 30 1 334 395 110 170 1.43e-13 69.3
Msa0236560 AT2G30250.1 50.820 61 29 1 338 398 329 388 1.55e-13 73.2
Msa0236560 AT2G30250.1 50.000 64 30 2 338 401 167 228 9.13e-12 67.4
Msa0236560 AT5G41570.1 46.032 63 33 1 332 394 93 154 1.63e-13 69.3
Msa0236560 AT5G07100.2 49.254 67 33 1 332 398 136 201 1.91e-13 70.1
Msa0236560 AT5G07100.2 42.466 73 41 1 330 402 17 88 2.20e-11 64.3
Msa0236560 AT5G07100.4 49.254 67 33 1 332 398 136 201 1.91e-13 70.1
Msa0236560 AT5G07100.4 42.466 73 41 1 330 402 17 88 2.20e-11 64.3
Msa0236560 AT5G07100.5 49.254 67 33 1 332 398 136 201 1.91e-13 70.1
Msa0236560 AT5G07100.5 42.466 73 41 1 330 402 17 88 2.20e-11 64.3
Msa0236560 AT5G07100.3 49.254 67 33 1 332 398 136 201 1.91e-13 70.1
Msa0236560 AT5G07100.3 42.466 73 41 1 330 402 17 88 2.20e-11 64.3
Msa0236560 AT5G56270.1 49.254 67 33 1 332 398 482 547 1.97e-13 73.6
Msa0236560 AT5G56270.1 50.769 65 30 2 337 401 273 335 1.98e-12 70.5
Msa0236560 AT4G30935.1 47.692 65 33 1 338 402 332 395 2.18e-13 72.8
Msa0236560 AT4G01720.1 48.333 60 31 0 338 397 240 299 2.24e-13 73.2
Msa0236560 AT4G31800.2 44.262 61 34 0 337 397 111 171 2.25e-13 70.5
Msa0236560 AT1G55600.1 38.750 80 48 1 318 397 288 366 2.71e-13 72.8
Msa0236560 AT2G21900.1 49.180 61 30 1 338 398 110 169 2.79e-13 69.3
Msa0236560 AT2G37260.1 55.738 61 25 2 338 398 166 224 3.63e-13 72.0
Msa0236560 AT2G37260.1 40.476 84 44 3 315 394 324 405 9.00e-13 70.9
Msa0236560 AT2G44745.1 47.619 63 32 1 332 394 140 201 4.17e-13 69.3
Msa0236560 AT4G31800.1 44.262 61 34 0 337 397 176 236 4.72e-13 70.9
Msa0236560 AT2G37260.3 55.738 61 25 2 338 398 86 144 4.90e-13 71.2
Msa0236560 AT2G37260.3 40.476 84 44 3 315 394 244 325 1.43e-12 69.7
Msa0236560 AT5G46350.1 48.387 62 31 1 337 398 183 243 4.91e-13 70.9
Msa0236560 AT2G37260.2 55.738 61 25 2 338 398 84 142 5.33e-13 70.9
Msa0236560 AT2G37260.2 40.476 84 44 3 315 394 242 323 1.44e-12 69.7
Msa0236560 AT4G26440.1 47.887 71 35 2 338 408 179 247 6.18e-13 72.0
Msa0236560 AT4G26440.1 38.372 86 52 1 332 417 367 451 5.99e-12 68.9
Msa0236560 AT5G45260.1 46.970 66 33 1 338 401 1209 1274 1.24e-12 71.6
Msa0236560 AT5G49520.1 46.667 60 31 1 338 397 222 280 1.36e-12 70.1
Msa0236560 AT1G69310.4 37.363 91 55 2 315 405 126 214 2.68e-12 68.2
Msa0236560 AT1G69310.2 37.363 91 55 2 315 405 126 214 2.68e-12 68.2
Msa0236560 AT1G69310.1 37.363 91 55 2 315 405 126 214 2.68e-12 68.2
Msa0236560 AT2G25000.2 42.623 61 35 0 337 397 103 163 4.07e-12 66.6
Msa0236560 AT2G25000.4 42.623 61 35 0 337 397 103 163 4.07e-12 66.6
Msa0236560 AT2G25000.3 42.623 61 35 0 337 397 125 185 5.06e-12 66.6
Msa0236560 AT2G40740.1 41.463 82 43 2 316 392 149 230 7.72e-12 66.6
Msa0236560 AT2G40740.3 41.463 82 43 2 316 392 158 239 9.33e-12 66.6
Msa0236560 AT2G25000.1 42.623 61 35 0 337 397 146 206 1.38e-11 65.9
Msa0236560 AT2G46130.1 38.750 80 48 1 315 394 8 86 2.25e-11 61.2
Msa0236560 AT4G39410.1 46.552 58 30 1 338 395 224 280 3.58e-11 65.1
Msa0236560 AT3G01970.1 46.154 65 32 2 338 400 66 129 4.21e-11 61.6
Msa0236560 AT5G13080.1 42.105 57 32 1 338 394 68 123 4.22e-11 61.6

Find 159 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCTTAAATGCTAGAAATT+TGG 0.075722 2_2:+9536308 Msa0236560:CDS
ACCCAAATTTCTAGCATTTA+AGG 0.127042 2_2:-9536310 None:intergenic
CTCTCTAATAGTTCTATTTC+TGG 0.157050 2_2:-9536255 None:intergenic
CATGAACACTAGTGTTTATC+AGG 0.198077 2_2:-9534988 Msa0236570:CDS
CTCCATGCCCACGGGTCTTT+TGG 0.209857 2_2:-9535601 None:intergenic
ATGAATCCAGTTTCAGAATA+AGG 0.224140 2_2:-9536411 None:intergenic
CCGTGGGCATGGAGGAAATA+TGG 0.249497 2_2:+9535610 Msa0236560:CDS
CGGATGTGGAGACCCTTTAA+TGG 0.271178 2_2:-9535641 None:intergenic
TCCTTAAATGCTAGAAATTT+GGG 0.273355 2_2:+9536309 Msa0236560:CDS
GGTGGGGATGGTGGTGGTCA+AGG 0.277140 2_2:-9534816 Msa0236570:CDS
GATAGTGTAGGTGGTGGTGG+CGG 0.292237 2_2:-9534786 Msa0236570:CDS
GATTACAGTGGCAGTGATAA+TGG 0.292582 2_2:-9534921 Msa0236570:CDS
GGGGATGGTGGTGGTCAAGG+GGG 0.302266 2_2:-9534813 Msa0236570:CDS
GTGGGGATGGTGGTGGTCAA+GGG 0.302668 2_2:-9534815 Msa0236570:CDS
TATTCTGAAACTGGATTCAT+TGG 0.302973 2_2:+9536414 Msa0236560:CDS
ATAGTTCTATTTCTGGATAA+AGG 0.309444 2_2:-9536248 None:intergenic
TAGAGGGAATGTGATGTTAT+TGG 0.309533 2_2:-9534582 None:intergenic
ATAGTGTAGGTGGTGGTGGC+GGG 0.318835 2_2:-9534785 Msa0236570:CDS
AACCTCCCTTATTCTGAAAC+TGG 0.323380 2_2:+9536405 Msa0236560:CDS
TGGGGATGGTGGTGGTCAAG+GGG 0.326902 2_2:-9534814 Msa0236570:CDS
ATGAAGTCATTTGGTTTAAG+TGG 0.330576 2_2:-9534671 None:intergenic
TGGGATAGTGTAGGTGGTGG+TGG 0.332732 2_2:-9534789 Msa0236570:CDS
TGCAACGCTACCACATTTAC+TGG 0.340291 2_2:+9534509 Msa0236560:CDS
AGTGTAGGTGGTGGTGGCGG+GGG 0.341815 2_2:-9534783 Msa0236570:CDS
GGGTATTGGAAAATTATAAT+TGG 0.342276 2_2:-9535029 Msa0236570:CDS
GGGATGGTGGTGGTCAAGGG+GGG 0.345552 2_2:-9534812 Msa0236570:CDS
TAGTGTAGGTGGTGGTGGCG+GGG 0.346368 2_2:-9534784 Msa0236570:CDS
CAAAGTGGTGTGACACTTAG+AGG 0.354737 2_2:-9534599 None:intergenic
ATAATTTGTGGGATATTGAT+TGG 0.356463 2_2:-9535242 Msa0236580:CDS
CACTATGCGGATCAAGAAAA+AGG 0.357686 2_2:+9535398 Msa0236560:CDS
TGCTCTTAGCAGATATGATT+GGG 0.361525 2_2:-9535189 Msa0236580:CDS
TTACACTCTGCGGAAGAAAC+TGG 0.365125 2_2:+9536120 Msa0236560:CDS
ACCCGTAACATTGCTACATT+GGG 0.366403 2_2:-9536367 None:intergenic
TCTAGATCTATGAAGTCATT+TGG 0.366608 2_2:-9534680 None:intergenic
AAATCCAGGTTCCCCTAGTA+TGG 0.366946 2_2:+9536161 Msa0236560:CDS
GTGCTTGTAGCAGATATGAT+AGG 0.367308 2_2:-9534962 Msa0236570:CDS
ATCTGCAACATCACCATACT+AGG 0.367397 2_2:-9536174 None:intergenic
ATCAATGCATGCAACATGTT+TGG 0.367904 2_2:-9535101 Msa0236570:CDS
ATCAATGCATGCAACATGTT+TGG 0.367904 2_2:-9535329 Msa0236580:CDS
TGATAGGGGTAGTGGTGGTC+GGG 0.373880 2_2:-9534946 Msa0236570:CDS
TCTGACCAAGCTGTTATGTT+TGG 0.377584 2_2:-9536468 None:intergenic
TTGGTCAGAAGATTATTTAA+TGG 0.378102 2_2:+9536482 Msa0236560:CDS
GGTTGGATGCACGATCAAAA+TGG 0.380288 2_2:-9535135 None:intergenic
GTTAGTGATGTGGGTGGGGA+TGG 0.386412 2_2:-9534828 Msa0236570:CDS
TCAATGCATGCAACATGTTT+GGG 0.386538 2_2:-9535100 Msa0236570:CDS
TCAATGCATGCAACATGTTT+GGG 0.386538 2_2:-9535328 Msa0236580:CDS
TGTTGTTGTCCAGCGGGTAT+TGG 0.401974 2_2:-9535043 Msa0236570:CDS
ATAATTGGCGGGATATTGAT+TGG 0.402825 2_2:-9535014 Msa0236570:CDS
TTGGTAGTGGTTTCGATTTG+AGG 0.403044 2_2:-9534563 None:intergenic
ATTACAGTGGCAGTGATAAT+GGG 0.403708 2_2:-9534920 Msa0236570:CDS
TTTAATAAGAATGTTGTTGT+TGG 0.409716 2_2:+9536066 Msa0236560:CDS
CAGCGCAAGTCACTGGAGAC+TGG 0.413600 2_2:+9536096 Msa0236560:CDS
GGATGTGGAGACCCTTTAAT+GGG 0.418234 2_2:-9535640 None:intergenic
CCCCAATGTAGCAATGTTAC+GGG 0.419952 2_2:+9536366 Msa0236560:CDS
TTGATTGATCAGCGAGAACC+TGG 0.424637 2_2:-9536221 None:intergenic
GTGCTCTTAGCAGATATGAT+TGG 0.424710 2_2:-9535190 Msa0236580:CDS
AGTGATGTGGGTGGGGATGG+TGG 0.428433 2_2:-9534825 Msa0236570:CDS
ATTGGGAAATTATAATTTGT+GGG 0.434731 2_2:-9535253 Msa0236580:CDS
AGTGGTGGGAATAGTGATGG+TGG 0.436219 2_2:-9534882 Msa0236570:CDS
ACAACATTCTTATTAAATGT+TGG 0.443200 2_2:-9536060 None:intergenic
CATTGGGAAATTATAATTTG+TGG 0.445048 2_2:-9535254 Msa0236580:CDS
CACCCGTAACATTGCTACAT+TGG 0.445193 2_2:-9536368 None:intergenic
TATAGCACACCAATGCCATT+TGG 0.445367 2_2:-9535561 None:intergenic
TGAATCCAGTTTCAGAATAA+GGG 0.447038 2_2:-9536410 None:intergenic
AGTGGGAGCTGAGGTGGGGA+TGG 0.450737 2_2:-9534726 None:intergenic
ATACTAGTGGGAGCTGAGGT+GGG 0.454923 2_2:-9534731 None:intergenic
AGCAGATATGATTGGGGTAG+TGG 0.455016 2_2:-9535182 Msa0236580:CDS
GAATGTGATGTTATTGGTAG+TGG 0.458828 2_2:-9534576 None:intergenic
GCCCCAATGTAGCAATGTTA+CGG 0.458952 2_2:+9536365 Msa0236560:CDS
ATGATAGGGGTAGTGGTGGT+CGG 0.463932 2_2:-9534947 Msa0236570:CDS
GATGTGGGTGGGGATGGTGG+TGG 0.464748 2_2:-9534822 Msa0236570:CDS
TAATGTTAGTGATGTGGGTG+GGG 0.465398 2_2:-9534832 Msa0236570:CDS
TACATCCCAGCGCAAGTCAC+TGG 0.469837 2_2:+9536089 Msa0236560:CDS
ATTGGAAAATTATAATTGGC+GGG 0.476395 2_2:-9535025 Msa0236570:CDS
CCATATTTCCTCCATGCCCA+CGG 0.476436 2_2:-9535610 None:intergenic
ATGGACTTCAAGTGCCTCAA+TGG 0.476923 2_2:+9536501 Msa0236560:CDS
CGTGGGCATGGAGGAAATAT+GGG 0.481905 2_2:+9535611 Msa0236560:CDS
TGAAGTCATTTGGTTTAAGT+GGG 0.485609 2_2:-9534670 None:intergenic
GTTTCGATTTGAGGTGGCGG+TGG 0.486220 2_2:-9534554 None:intergenic
ACCTGGGTATTGCTGCTCTC+CGG 0.486470 2_2:-9536204 None:intergenic
TGGCATTGGTGTGCTATATG+AGG 0.487449 2_2:+9535566 Msa0236560:CDS
GGGTGGGATAGTGTAGGTGG+TGG 0.487925 2_2:-9534792 Msa0236570:CDS
TTACCCTCTGTGGAAGAAGT+TGG 0.488537 2_2:+9536282 Msa0236560:CDS
CAGTCTCCAGTGACTTGCGC+TGG 0.491501 2_2:-9536095 None:intergenic
CATACTAGTGGGAGCTGAGG+TGG 0.495210 2_2:-9534732 None:intergenic
TGCTTGTAGCAGATATGATA+GGG 0.497057 2_2:-9534961 Msa0236570:CDS
ATCACCATACTAGGGGAACC+TGG 0.508434 2_2:-9536165 None:intergenic
GTGGGAGCTGAGGTGGGGAT+GGG 0.514412 2_2:-9534725 None:intergenic
TAGAAAACATAATAACCAAA+TGG 0.516057 2_2:+9535546 Msa0236560:intron
ACTTATATTGTAACATATGA+AGG 0.520110 2_2:+9536018 Msa0236560:CDS
TATTGGAAAATTATAATTGG+CGG 0.522883 2_2:-9535026 Msa0236570:CDS
GATGTTGCAGATCGATCATC+CGG 0.525110 2_2:+9536185 Msa0236560:CDS
ATATTTGTAAACCTCGGATG+TGG 0.527362 2_2:-9535655 None:intergenic
AGCAGATATGATAGGGGTAG+TGG 0.527593 2_2:-9534954 Msa0236570:CDS
TTCCAAAAGACCCGTGGGCA+TGG 0.527766 2_2:+9535599 Msa0236560:CDS
CGCATAGTGCAACCGATGGA+TGG 0.529058 2_2:-9535384 None:intergenic
AGTCTCCAGTGACTTGCGCT+GGG 0.530524 2_2:-9536094 None:intergenic
ACATAATAACCAAATGGCAT+TGG 0.531292 2_2:+9535552 Msa0236560:CDS
TCTACAAACATCACAAATCC+AGG 0.538062 2_2:+9536147 Msa0236560:CDS
TTGAATTTGTTGTTGTCCAG+CGG 0.540268 2_2:-9535050 Msa0236570:CDS
AGCGCAAGTCACTGGAGACT+GGG 0.541737 2_2:+9536097 Msa0236560:CDS
TATAATTTCCCAATGCACGC+TGG 0.543748 2_2:+9535262 Msa0236560:CDS
GATAGGGGTAGTGGTGGTCG+GGG 0.550830 2_2:-9534945 Msa0236570:CDS
GTTGGATGCACGATCAAAAT+GGG 0.551415 2_2:-9535134 None:intergenic
TGGCATACTAGTGGGAGCTG+AGG 0.554747 2_2:-9534735 None:intergenic
GGCGATAACTGATGGATGGT+TGG 0.556513 2_2:-9535152 None:intergenic
CATATTTCCTCCATGCCCAC+GGG 0.559003 2_2:-9535609 None:intergenic
AGTGTTAATGTTAGTGATGT+GGG 0.567585 2_2:-9534837 Msa0236570:CDS
TACTAGTGGGAGCTGAGGTG+GGG 0.568500 2_2:-9534730 None:intergenic
TGATACCAAACATAACAGCT+TGG 0.570214 2_2:+9536463 Msa0236560:CDS
GTGGTGGGAATAGTGATGGT+GGG 0.572780 2_2:-9534881 Msa0236570:CDS
GATTGGGGTAGTGGTGGTCG+AGG 0.574650 2_2:-9535173 Msa0236580:CDS
AGATTGTCCAGCAAGAAGAA+AGG 0.576880 2_2:+9535969 Msa0236560:CDS
GGGAGTGGTGGGAATAGTGA+TGG 0.578338 2_2:-9534885 Msa0236570:CDS
TGAATTTGTTGTTGTCCAGC+GGG 0.581001 2_2:-9535049 Msa0236570:CDS
TCTGCAACATCACCATACTA+GGG 0.581668 2_2:-9536173 None:intergenic
TTGATTGGTTTCATGAACAC+TGG 0.583186 2_2:-9535227 Msa0236580:CDS
GGAATATAGCGCCACCATTG+AGG 0.585327 2_2:-9536515 None:intergenic
GTGGTTTCGATTTGAGGTGG+CGG 0.594576 2_2:-9534557 None:intergenic
ATGAACACTGGTGTTTGTCA+TGG 0.597215 2_2:-9535215 Msa0236580:CDS
GTAGTGGTTTCGATTTGAGG+TGG 0.597682 2_2:-9534560 None:intergenic
AAAGTGGTGTGACACTTAGA+GGG 0.602585 2_2:-9534598 None:intergenic
GTGGTCGAGGCGATAACTGA+TGG 0.602965 2_2:-9535160 None:intergenic
TCCGGAGAGCAGCAATACCC+AGG 0.606173 2_2:+9536203 Msa0236560:CDS
ATGAACACTAGTGTTTATCA+GGG 0.614534 2_2:-9534987 Msa0236570:CDS
ATCCAGTTTCAGAATAAGGG+AGG 0.616537 2_2:-9536407 None:intergenic
ATATGCACGTTCAAAATGAG+TGG 0.616968 2_2:-9535359 None:intergenic
GACTTCAAGTGCCTCAATGG+TGG 0.617561 2_2:+9536504 Msa0236560:CDS
TTAATGTTAGTGATGTGGGT+GGG 0.619756 2_2:-9534833 Msa0236570:CDS
GAAGTCATTTGGTTTAAGTG+GGG 0.620194 2_2:-9534669 None:intergenic
GCTATTACAAATGTAGCACT+TGG 0.623098 2_2:+9535944 Msa0236560:CDS
TAGTGTTAATGTTAGTGATG+TGG 0.624324 2_2:-9534838 Msa0236570:CDS
TTACAGTGGCAGTGATAATG+GGG 0.626243 2_2:-9534919 Msa0236570:CDS
GTTGGTAGGACCAGTAAATG+TGG 0.630317 2_2:-9534519 None:intergenic
TTAAAGGGTCTCCACATCCG+AGG 0.642226 2_2:+9535644 Msa0236560:CDS
AGATATGATTGGGGTAGTGG+TGG 0.642708 2_2:-9535179 Msa0236580:CDS
ATGAGCTTCCAAAAGACCCG+TGG 0.645013 2_2:+9535593 Msa0236560:CDS
CAAAAGACCCGTGGGCATGG+AGG 0.646342 2_2:+9535602 Msa0236560:CDS
GATCCGCATAGTGCAACCGA+TGG 0.649098 2_2:-9535388 None:intergenic
GATCCAACTTCTTCCACAGA+GGG 0.650056 2_2:-9536285 None:intergenic
GTAAAATCATCATAGCAAAG+TGG 0.655809 2_2:-9534614 None:intergenic
CATCCATCGGTTGCACTATG+CGG 0.659476 2_2:+9535385 Msa0236560:CDS
AGATATGATAGGGGTAGTGG+TGG 0.663183 2_2:-9534951 Msa0236570:CDS
TCGAGGCGATAACTGATGGA+TGG 0.664288 2_2:-9535156 None:intergenic
AGAGAGTCACTTACCCTCTG+TGG 0.665669 2_2:+9536272 Msa0236560:CDS
TGATTGATCAGCGAGAACCT+GGG 0.667246 2_2:-9536220 None:intergenic
TGAGCTTCCAAAAGACCCGT+GGG 0.668568 2_2:+9535594 Msa0236560:CDS
GGCATTGGTGTGCTATATGA+GGG 0.674239 2_2:+9535567 Msa0236560:CDS
GCTTGTAGCAGATATGATAG+GGG 0.681969 2_2:-9534960 Msa0236570:CDS
ACGTGCATATAACCATCCAT+CGG 0.683151 2_2:+9535372 Msa0236560:CDS
GCTCTTAGCAGATATGATTG+GGG 0.685620 2_2:-9535188 Msa0236580:CDS
GGTGGTCGGGGTGATTACAG+TGG 0.694133 2_2:-9534933 Msa0236570:CDS
GTTAATGTTAGTGATGTGGG+TGG 0.694254 2_2:-9534834 Msa0236570:CDS
CCCGTAACATTGCTACATTG+GGG 0.713332 2_2:-9536366 None:intergenic
CTGCAACATCACCATACTAG+GGG 0.719168 2_2:-9536172 None:intergenic
GGATGCACGATCAAAATGGG+TGG 0.719593 2_2:-9535131 None:intergenic
TACAGTGGCAGTGATAATGG+GGG 0.720290 2_2:-9534918 Msa0236570:CDS
GGAGACTGGGTTACACTCTG+CGG 0.721711 2_2:+9536110 Msa0236560:CDS
TGATCCAACTTCTTCCACAG+AGG 0.749435 2_2:-9536286 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAATTATTGTTTATAATG+TGG - chr2_2:9535716-9535735 None:intergenic 15.0%
!!! ATTTTTAAAACATCAAAAAC+TGG + chr2_2:9535866-9535885 Msa0236560:intron 15.0%
!! CAAAATTATTGTTTATAATG+TGG - chr2_2:9535716-9535735 None:intergenic 15.0%
!!! ATTTTTAAAACATCAAAAAC+TGG + chr2_2:9535866-9535885 Msa0236560:intron 15.0%
!! TATTGGAAAATTATAATTGG+CGG - chr2_2:9535029-9535048 Msa0236570:CDS 20.0%
!!! ATTGGGAAATTATAATTTGT+GGG - chr2_2:9535256-9535275 Msa0236580:CDS 20.0%
!!! TGTTTTCTATAAGAAAAGAA+AGG - chr2_2:9535535-9535554 None:intergenic 20.0%
!! TAGAAAACATAATAACCAAA+TGG + chr2_2:9535546-9535565 Msa0236560:intron 20.0%
!!! TTTTGAATATTTGTAAACCT+CGG - chr2_2:9535664-9535683 None:intergenic 20.0%
!! ATTTCTTTCAACATCATTTA+TGG - chr2_2:9535904-9535923 None:intergenic 20.0%
!! ACTTATATTGTAACATATGA+AGG + chr2_2:9536018-9536037 Msa0236560:CDS 20.0%
!! ACAACATTCTTATTAAATGT+TGG - chr2_2:9536063-9536082 None:intergenic 20.0%
!! TTTAATAAGAATGTTGTTGT+TGG + chr2_2:9536066-9536085 Msa0236560:CDS 20.0%
!! TATTGGAAAATTATAATTGG+CGG - chr2_2:9535029-9535048 Msa0236570:CDS 20.0%
!!! ATTGGGAAATTATAATTTGT+GGG - chr2_2:9535256-9535275 Msa0236580:CDS 20.0%
!!! TGTTTTCTATAAGAAAAGAA+AGG - chr2_2:9535535-9535554 None:intergenic 20.0%
!! TAGAAAACATAATAACCAAA+TGG + chr2_2:9535546-9535565 Msa0236560:intron 20.0%
!!! TTTTGAATATTTGTAAACCT+CGG - chr2_2:9535664-9535683 None:intergenic 20.0%
!! ATTTCTTTCAACATCATTTA+TGG - chr2_2:9535904-9535923 None:intergenic 20.0%
!! ACTTATATTGTAACATATGA+AGG + chr2_2:9536018-9536037 Msa0236560:CDS 20.0%
!! ACAACATTCTTATTAAATGT+TGG - chr2_2:9536063-9536082 None:intergenic 20.0%
!! TTTAATAAGAATGTTGTTGT+TGG + chr2_2:9536066-9536085 Msa0236560:CDS 20.0%
! ATTGGAAAATTATAATTGGC+GGG - chr2_2:9535028-9535047 Msa0236570:CDS 25.0%
!!! GGGTATTGGAAAATTATAAT+TGG - chr2_2:9535032-9535051 Msa0236570:CDS 25.0%
!! ATAATTTGTGGGATATTGAT+TGG - chr2_2:9535245-9535264 Msa0236580:CDS 25.0%
! CATTGGGAAATTATAATTTG+TGG - chr2_2:9535257-9535276 Msa0236580:CDS 25.0%
! AAATCAATAAATGATGTTGC+AGG + chr2_2:9535920-9535939 Msa0236560:intron 25.0%
!!! ATAGTTCTATTTCTGGATAA+AGG - chr2_2:9536251-9536270 None:intergenic 25.0%
! ATCCTTAAATGCTAGAAATT+TGG + chr2_2:9536308-9536327 Msa0236560:CDS 25.0%
! TCCTTAAATGCTAGAAATTT+GGG + chr2_2:9536309-9536328 Msa0236560:CDS 25.0%
! TTGGTCAGAAGATTATTTAA+TGG + chr2_2:9536482-9536501 Msa0236560:CDS 25.0%
! ATTGGAAAATTATAATTGGC+GGG - chr2_2:9535028-9535047 Msa0236570:CDS 25.0%
!!! GGGTATTGGAAAATTATAAT+TGG - chr2_2:9535032-9535051 Msa0236570:CDS 25.0%
!! ATAATTTGTGGGATATTGAT+TGG - chr2_2:9535245-9535264 Msa0236580:CDS 25.0%
! CATTGGGAAATTATAATTTG+TGG - chr2_2:9535257-9535276 Msa0236580:CDS 25.0%
! AAATCAATAAATGATGTTGC+AGG + chr2_2:9535920-9535939 Msa0236560:intron 25.0%
!!! ATAGTTCTATTTCTGGATAA+AGG - chr2_2:9536251-9536270 None:intergenic 25.0%
! ATCCTTAAATGCTAGAAATT+TGG + chr2_2:9536308-9536327 Msa0236560:CDS 25.0%
! TCCTTAAATGCTAGAAATTT+GGG + chr2_2:9536309-9536328 Msa0236560:CDS 25.0%
! TTGGTCAGAAGATTATTTAA+TGG + chr2_2:9536482-9536501 Msa0236560:CDS 25.0%
! GGATTTTCAAAAATGTTGGT+AGG - chr2_2:9534536-9534555 None:intergenic 30.0%
GTAAAATCATCATAGCAAAG+TGG - chr2_2:9534617-9534636 None:intergenic 30.0%
! AAGAGACTGAACTATTTTCT+TGG - chr2_2:9534646-9534665 None:intergenic 30.0%
! TGAAGTCATTTGGTTTAAGT+GGG - chr2_2:9534673-9534692 None:intergenic 30.0%
! ATGAAGTCATTTGGTTTAAG+TGG - chr2_2:9534674-9534693 None:intergenic 30.0%
TCTAGATCTATGAAGTCATT+TGG - chr2_2:9534683-9534702 None:intergenic 30.0%
!!! TTGATTTTTGGCATACTAGT+GGG - chr2_2:9534746-9534765 Msa0236570:CDS 30.0%
!!! ATTGATTTTTGGCATACTAG+TGG - chr2_2:9534747-9534766 Msa0236570:CDS 30.0%
AGTGTTAATGTTAGTGATGT+GGG - chr2_2:9534840-9534859 Msa0236570:CDS 30.0%
TAGTGTTAATGTTAGTGATG+TGG - chr2_2:9534841-9534860 Msa0236570:CDS 30.0%
ATGAACACTAGTGTTTATCA+GGG - chr2_2:9534990-9535009 Msa0236570:CDS 30.0%
ACATAATAACCAAATGGCAT+TGG + chr2_2:9535552-9535571 Msa0236560:CDS 30.0%
! CTCTCTAATAGTTCTATTTC+TGG - chr2_2:9536258-9536277 None:intergenic 30.0%
!! ACCCAAATTTCTAGCATTTA+AGG - chr2_2:9536313-9536332 None:intergenic 30.0%
TGAATCCAGTTTCAGAATAA+GGG - chr2_2:9536413-9536432 None:intergenic 30.0%
ATGAATCCAGTTTCAGAATA+AGG - chr2_2:9536414-9536433 None:intergenic 30.0%
!! TATTCTGAAACTGGATTCAT+TGG + chr2_2:9536414-9536433 Msa0236560:CDS 30.0%
! GGATTTTCAAAAATGTTGGT+AGG - chr2_2:9534536-9534555 None:intergenic 30.0%
GTAAAATCATCATAGCAAAG+TGG - chr2_2:9534617-9534636 None:intergenic 30.0%
! AAGAGACTGAACTATTTTCT+TGG - chr2_2:9534646-9534665 None:intergenic 30.0%
! TGAAGTCATTTGGTTTAAGT+GGG - chr2_2:9534673-9534692 None:intergenic 30.0%
! ATGAAGTCATTTGGTTTAAG+TGG - chr2_2:9534674-9534693 None:intergenic 30.0%
TCTAGATCTATGAAGTCATT+TGG - chr2_2:9534683-9534702 None:intergenic 30.0%
!!! TTGATTTTTGGCATACTAGT+GGG - chr2_2:9534746-9534765 Msa0236570:CDS 30.0%
!!! ATTGATTTTTGGCATACTAG+TGG - chr2_2:9534747-9534766 Msa0236570:CDS 30.0%
AGTGTTAATGTTAGTGATGT+GGG - chr2_2:9534840-9534859 Msa0236570:CDS 30.0%
TAGTGTTAATGTTAGTGATG+TGG - chr2_2:9534841-9534860 Msa0236570:CDS 30.0%
ATGAACACTAGTGTTTATCA+GGG - chr2_2:9534990-9535009 Msa0236570:CDS 30.0%
ACATAATAACCAAATGGCAT+TGG + chr2_2:9535552-9535571 Msa0236560:CDS 30.0%
! CTCTCTAATAGTTCTATTTC+TGG - chr2_2:9536258-9536277 None:intergenic 30.0%
!! ACCCAAATTTCTAGCATTTA+AGG - chr2_2:9536313-9536332 None:intergenic 30.0%
TGAATCCAGTTTCAGAATAA+GGG - chr2_2:9536413-9536432 None:intergenic 30.0%
ATGAATCCAGTTTCAGAATA+AGG - chr2_2:9536414-9536433 None:intergenic 30.0%
!! TATTCTGAAACTGGATTCAT+TGG + chr2_2:9536414-9536433 Msa0236560:CDS 30.0%
!! CGGTGGATTTTCAAAAATGT+TGG - chr2_2:9534540-9534559 None:intergenic 35.0%
GAATGTGATGTTATTGGTAG+TGG - chr2_2:9534579-9534598 None:intergenic 35.0%
TAGAGGGAATGTGATGTTAT+TGG - chr2_2:9534585-9534604 None:intergenic 35.0%
! GAAGTCATTTGGTTTAAGTG+GGG - chr2_2:9534672-9534691 None:intergenic 35.0%
TTAATGTTAGTGATGTGGGT+GGG - chr2_2:9534836-9534855 Msa0236570:CDS 35.0%
ATTACAGTGGCAGTGATAAT+GGG - chr2_2:9534923-9534942 Msa0236570:CDS 35.0%
TGCTTGTAGCAGATATGATA+GGG - chr2_2:9534964-9534983 Msa0236570:CDS 35.0%
CATGAACACTAGTGTTTATC+AGG - chr2_2:9534991-9535010 Msa0236570:CDS 35.0%
ATAATTGGCGGGATATTGAT+TGG - chr2_2:9535017-9535036 Msa0236570:CDS 35.0%
! TATAATTTTCCAATACCCGC+TGG + chr2_2:9535034-9535053 Msa0236560:CDS 35.0%
!! TTGAATTTGTTGTTGTCCAG+CGG - chr2_2:9535053-9535072 Msa0236570:CDS 35.0%
TCAATGCATGCAACATGTTT+GGG - chr2_2:9535103-9535122 Msa0236570:CDS 35.0%
ATCAATGCATGCAACATGTT+TGG - chr2_2:9535104-9535123 Msa0236570:CDS 35.0%
TGCTCTTAGCAGATATGATT+GGG - chr2_2:9535192-9535211 Msa0236580:CDS 35.0%
!! TTGATTGGTTTCATGAACAC+TGG - chr2_2:9535002-9535021 Msa0236570:CDS 35.0%
TCAATGCATGCAACATGTTT+GGG - chr2_2:9535103-9535122 Msa0236570:CDS 35.0%
ATCAATGCATGCAACATGTT+TGG - chr2_2:9535104-9535123 Msa0236570:CDS 35.0%
ATATGCACGTTCAAAATGAG+TGG - chr2_2:9535362-9535381 None:intergenic 35.0%
TATGGGCAAAAACCCATTAA+AGG + chr2_2:9535628-9535647 Msa0236560:CDS 35.0%
ATGGGCAAAAACCCATTAAA+GGG + chr2_2:9535629-9535648 Msa0236560:CDS 35.0%
ATATTTGTAAACCTCGGATG+TGG - chr2_2:9535658-9535677 None:intergenic 35.0%
! CATCACTGTTTAAAACACGA+GGG - chr2_2:9535761-9535780 None:intergenic 35.0%
ATCCTTGTCAGTGCATATAA+TGG + chr2_2:9535793-9535812 Msa0236560:intron 35.0%
! TACCATTATATGCACTGACA+AGG - chr2_2:9535798-9535817 None:intergenic 35.0%
GCTATTACAAATGTAGCACT+TGG + chr2_2:9535944-9535963 Msa0236560:CDS 35.0%
! TTTTCAACCTTTCTTCTTGC+TGG - chr2_2:9535979-9535998 None:intergenic 35.0%
TCTACAAACATCACAAATCC+AGG + chr2_2:9536147-9536166 Msa0236560:CDS 35.0%
TGATACCAAACATAACAGCT+TGG + chr2_2:9536463-9536482 Msa0236560:CDS 35.0%
!! CGGTGGATTTTCAAAAATGT+TGG - chr2_2:9534540-9534559 None:intergenic 35.0%
GAATGTGATGTTATTGGTAG+TGG - chr2_2:9534579-9534598 None:intergenic 35.0%
TAGAGGGAATGTGATGTTAT+TGG - chr2_2:9534585-9534604 None:intergenic 35.0%
! GAAGTCATTTGGTTTAAGTG+GGG - chr2_2:9534672-9534691 None:intergenic 35.0%
TTAATGTTAGTGATGTGGGT+GGG - chr2_2:9534836-9534855 Msa0236570:CDS 35.0%
ATTACAGTGGCAGTGATAAT+GGG - chr2_2:9534923-9534942 Msa0236570:CDS 35.0%
TGCTTGTAGCAGATATGATA+GGG - chr2_2:9534964-9534983 Msa0236570:CDS 35.0%
CATGAACACTAGTGTTTATC+AGG - chr2_2:9534991-9535010 Msa0236570:CDS 35.0%
ATAATTGGCGGGATATTGAT+TGG - chr2_2:9535017-9535036 Msa0236570:CDS 35.0%
! TATAATTTTCCAATACCCGC+TGG + chr2_2:9535034-9535053 Msa0236560:CDS 35.0%
!! TTGAATTTGTTGTTGTCCAG+CGG - chr2_2:9535053-9535072 Msa0236570:CDS 35.0%
TCAATGCATGCAACATGTTT+GGG - chr2_2:9535103-9535122 Msa0236570:CDS 35.0%
ATCAATGCATGCAACATGTT+TGG - chr2_2:9535104-9535123 Msa0236570:CDS 35.0%
TGCTCTTAGCAGATATGATT+GGG - chr2_2:9535192-9535211 Msa0236580:CDS 35.0%
!! TTGATTGGTTTCATGAACAC+TGG - chr2_2:9535002-9535021 Msa0236570:CDS 35.0%
TCAATGCATGCAACATGTTT+GGG - chr2_2:9535103-9535122 Msa0236570:CDS 35.0%
ATCAATGCATGCAACATGTT+TGG - chr2_2:9535104-9535123 Msa0236570:CDS 35.0%
ATATGCACGTTCAAAATGAG+TGG - chr2_2:9535362-9535381 None:intergenic 35.0%
TATGGGCAAAAACCCATTAA+AGG + chr2_2:9535628-9535647 Msa0236560:CDS 35.0%
ATGGGCAAAAACCCATTAAA+GGG + chr2_2:9535629-9535648 Msa0236560:CDS 35.0%
ATATTTGTAAACCTCGGATG+TGG - chr2_2:9535658-9535677 None:intergenic 35.0%
! CATCACTGTTTAAAACACGA+GGG - chr2_2:9535761-9535780 None:intergenic 35.0%
ATCCTTGTCAGTGCATATAA+TGG + chr2_2:9535793-9535812 Msa0236560:intron 35.0%
! TACCATTATATGCACTGACA+AGG - chr2_2:9535798-9535817 None:intergenic 35.0%
GCTATTACAAATGTAGCACT+TGG + chr2_2:9535944-9535963 Msa0236560:CDS 35.0%
! TTTTCAACCTTTCTTCTTGC+TGG - chr2_2:9535979-9535998 None:intergenic 35.0%
TCTACAAACATCACAAATCC+AGG + chr2_2:9536147-9536166 Msa0236560:CDS 35.0%
TGATACCAAACATAACAGCT+TGG + chr2_2:9536463-9536482 Msa0236560:CDS 35.0%
!! TTGGTAGTGGTTTCGATTTG+AGG - chr2_2:9534566-9534585 None:intergenic 40.0%
AAAGTGGTGTGACACTTAGA+GGG - chr2_2:9534601-9534620 None:intergenic 40.0%
!!! GTGGTGGTGGTATTGATTTT+TGG - chr2_2:9534758-9534777 Msa0236570:CDS 40.0%
TAATGTTAGTGATGTGGGTG+GGG - chr2_2:9534835-9534854 Msa0236570:CDS 40.0%
GTTAATGTTAGTGATGTGGG+TGG - chr2_2:9534837-9534856 Msa0236570:CDS 40.0%
!! TGATAATGGGGGTAATGGTA+GGG - chr2_2:9534910-9534929 Msa0236570:CDS 40.0%
! TTACAGTGGCAGTGATAATG+GGG - chr2_2:9534922-9534941 Msa0236570:CDS 40.0%
GATTACAGTGGCAGTGATAA+TGG - chr2_2:9534924-9534943 Msa0236570:CDS 40.0%
GCTTGTAGCAGATATGATAG+GGG - chr2_2:9534963-9534982 Msa0236570:CDS 40.0%
GTGCTTGTAGCAGATATGAT+AGG - chr2_2:9534965-9534984 Msa0236570:CDS 40.0%
!! TGAATTTGTTGTTGTCCAGC+GGG - chr2_2:9535052-9535071 Msa0236570:CDS 40.0%
GTTGGATGCACGATCAAAAT+GGG - chr2_2:9535137-9535156 None:intergenic 40.0%
GCTCTTAGCAGATATGATTG+GGG - chr2_2:9535191-9535210 Msa0236580:CDS 40.0%
GTGCTCTTAGCAGATATGAT+TGG - chr2_2:9535193-9535212 Msa0236580:CDS 40.0%
ATGAACACTGGTGTTTGTCA+TGG - chr2_2:9535218-9535237 Msa0236580:CDS 40.0%
TATAATTTCCCAATGCACGC+TGG + chr2_2:9535262-9535281 Msa0236560:CDS 40.0%
ACGTGCATATAACCATCCAT+CGG + chr2_2:9535372-9535391 Msa0236560:CDS 40.0%
CACTATGCGGATCAAGAAAA+AGG + chr2_2:9535398-9535417 Msa0236560:CDS 40.0%
TATAGCACACCAATGCCATT+TGG - chr2_2:9535564-9535583 None:intergenic 40.0%
! CCATCACTGTTTAAAACACG+AGG - chr2_2:9535762-9535781 None:intergenic 40.0%
!! CCTCGTGTTTTAAACAGTGA+TGG + chr2_2:9535759-9535778 Msa0236560:intron 40.0%
AGATTGTCCAGCAAGAAGAA+AGG + chr2_2:9535969-9535988 Msa0236560:CDS 40.0%
TCTGCAACATCACCATACTA+GGG - chr2_2:9536176-9536195 None:intergenic 40.0%
ATCTGCAACATCACCATACT+AGG - chr2_2:9536177-9536196 None:intergenic 40.0%
ACCCGTAACATTGCTACATT+GGG - chr2_2:9536370-9536389 None:intergenic 40.0%
!! AACCTCCCTTATTCTGAAAC+TGG + chr2_2:9536405-9536424 Msa0236560:CDS 40.0%
ATCCAGTTTCAGAATAAGGG+AGG - chr2_2:9536410-9536429 None:intergenic 40.0%
TCTGACCAAGCTGTTATGTT+TGG - chr2_2:9536471-9536490 None:intergenic 40.0%
!! TTGGTAGTGGTTTCGATTTG+AGG - chr2_2:9534566-9534585 None:intergenic 40.0%
AAAGTGGTGTGACACTTAGA+GGG - chr2_2:9534601-9534620 None:intergenic 40.0%
!!! GTGGTGGTGGTATTGATTTT+TGG - chr2_2:9534758-9534777 Msa0236570:CDS 40.0%
TAATGTTAGTGATGTGGGTG+GGG - chr2_2:9534835-9534854 Msa0236570:CDS 40.0%
GTTAATGTTAGTGATGTGGG+TGG - chr2_2:9534837-9534856 Msa0236570:CDS 40.0%
!! TGATAATGGGGGTAATGGTA+GGG - chr2_2:9534910-9534929 Msa0236570:CDS 40.0%
! TTACAGTGGCAGTGATAATG+GGG - chr2_2:9534922-9534941 Msa0236570:CDS 40.0%
GATTACAGTGGCAGTGATAA+TGG - chr2_2:9534924-9534943 Msa0236570:CDS 40.0%
GCTTGTAGCAGATATGATAG+GGG - chr2_2:9534963-9534982 Msa0236570:CDS 40.0%
GTGCTTGTAGCAGATATGAT+AGG - chr2_2:9534965-9534984 Msa0236570:CDS 40.0%
!! TGAATTTGTTGTTGTCCAGC+GGG - chr2_2:9535052-9535071 Msa0236570:CDS 40.0%
GTTGGATGCACGATCAAAAT+GGG - chr2_2:9535137-9535156 None:intergenic 40.0%
GCTCTTAGCAGATATGATTG+GGG - chr2_2:9535191-9535210 Msa0236580:CDS 40.0%
GTGCTCTTAGCAGATATGAT+TGG - chr2_2:9535193-9535212 Msa0236580:CDS 40.0%
ATGAACACTGGTGTTTGTCA+TGG - chr2_2:9535218-9535237 Msa0236580:CDS 40.0%
TATAATTTCCCAATGCACGC+TGG + chr2_2:9535262-9535281 Msa0236560:CDS 40.0%
ACGTGCATATAACCATCCAT+CGG + chr2_2:9535372-9535391 Msa0236560:CDS 40.0%
CACTATGCGGATCAAGAAAA+AGG + chr2_2:9535398-9535417 Msa0236560:CDS 40.0%
TATAGCACACCAATGCCATT+TGG - chr2_2:9535564-9535583 None:intergenic 40.0%
! CCATCACTGTTTAAAACACG+AGG - chr2_2:9535762-9535781 None:intergenic 40.0%
!! CCTCGTGTTTTAAACAGTGA+TGG + chr2_2:9535759-9535778 Msa0236560:intron 40.0%
AGATTGTCCAGCAAGAAGAA+AGG + chr2_2:9535969-9535988 Msa0236560:CDS 40.0%
TCTGCAACATCACCATACTA+GGG - chr2_2:9536176-9536195 None:intergenic 40.0%
ATCTGCAACATCACCATACT+AGG - chr2_2:9536177-9536196 None:intergenic 40.0%
ACCCGTAACATTGCTACATT+GGG - chr2_2:9536370-9536389 None:intergenic 40.0%
!! AACCTCCCTTATTCTGAAAC+TGG + chr2_2:9536405-9536424 Msa0236560:CDS 40.0%
ATCCAGTTTCAGAATAAGGG+AGG - chr2_2:9536410-9536429 None:intergenic 40.0%
TCTGACCAAGCTGTTATGTT+TGG - chr2_2:9536471-9536490 None:intergenic 40.0%
TGCAACGCTACCACATTTAC+TGG + chr2_2:9534509-9534528 Msa0236560:CDS 45.0%
! GTTGGTAGGACCAGTAAATG+TGG - chr2_2:9534522-9534541 None:intergenic 45.0%
! GTAGTGGTTTCGATTTGAGG+TGG - chr2_2:9534563-9534582 None:intergenic 45.0%
CAAAGTGGTGTGACACTTAG+AGG - chr2_2:9534602-9534621 None:intergenic 45.0%
! ATAATGGGGGTAATGGTAGG+GGG - chr2_2:9534908-9534927 Msa0236570:CDS 45.0%
!! GATAATGGGGGTAATGGTAG+GGG - chr2_2:9534909-9534928 Msa0236570:CDS 45.0%
!! GTGATAATGGGGGTAATGGT+AGG - chr2_2:9534911-9534930 Msa0236570:CDS 45.0%
!! TACAGTGGCAGTGATAATGG+GGG - chr2_2:9534921-9534940 Msa0236570:CDS 45.0%
! AGATATGATAGGGGTAGTGG+TGG - chr2_2:9534954-9534973 Msa0236570:CDS 45.0%
AGCAGATATGATAGGGGTAG+TGG - chr2_2:9534957-9534976 Msa0236570:CDS 45.0%
GGTTGGATGCACGATCAAAA+TGG - chr2_2:9535138-9535157 None:intergenic 45.0%
! AGATATGATTGGGGTAGTGG+TGG - chr2_2:9535182-9535201 Msa0236580:CDS 45.0%
AGCAGATATGATTGGGGTAG+TGG - chr2_2:9535185-9535204 Msa0236580:CDS 45.0%
! GTTTTTGTCCAGCGTGCATT+GGG - chr2_2:9535273-9535292 Msa0236580:CDS 45.0%
!! TGTTTTTGTCCAGCGTGCAT+TGG - chr2_2:9535274-9535293 Msa0236580:CDS 45.0%
!! TGGCATTGGTGTGCTATATG+AGG + chr2_2:9535566-9535585 Msa0236560:CDS 45.0%
!! GGCATTGGTGTGCTATATGA+GGG + chr2_2:9535567-9535586 Msa0236560:CDS 45.0%
GGATGTGGAGACCCTTTAAT+GGG - chr2_2:9535643-9535662 None:intergenic 45.0%
!! AGGGTGCGAGTGTTTGTTTT+AGG - chr2_2:9535742-9535761 None:intergenic 45.0%
TTACACTCTGCGGAAGAAAC+TGG + chr2_2:9536120-9536139 Msa0236560:CDS 45.0%
AAATCCAGGTTCCCCTAGTA+TGG + chr2_2:9536161-9536180 Msa0236560:CDS 45.0%
CTGCAACATCACCATACTAG+GGG - chr2_2:9536175-9536194 None:intergenic 45.0%
GATGTTGCAGATCGATCATC+CGG + chr2_2:9536185-9536204 Msa0236560:CDS 45.0%
TGATTGATCAGCGAGAACCT+GGG - chr2_2:9536223-9536242 None:intergenic 45.0%
TTGATTGATCAGCGAGAACC+TGG - chr2_2:9536224-9536243 None:intergenic 45.0%
TTACCCTCTGTGGAAGAAGT+TGG + chr2_2:9536282-9536301 Msa0236560:CDS 45.0%
GATCCAACTTCTTCCACAGA+GGG - chr2_2:9536288-9536307 None:intergenic 45.0%
TGATCCAACTTCTTCCACAG+AGG - chr2_2:9536289-9536308 None:intergenic 45.0%
GCCCCAATGTAGCAATGTTA+CGG + chr2_2:9536365-9536384 Msa0236560:CDS 45.0%
CCCGTAACATTGCTACATTG+GGG - chr2_2:9536369-9536388 None:intergenic 45.0%
CCCCAATGTAGCAATGTTAC+GGG + chr2_2:9536366-9536385 Msa0236560:CDS 45.0%
CACCCGTAACATTGCTACAT+TGG - chr2_2:9536371-9536390 None:intergenic 45.0%
ATGGACTTCAAGTGCCTCAA+TGG + chr2_2:9536501-9536520 Msa0236560:CDS 45.0%
TGCAACGCTACCACATTTAC+TGG + chr2_2:9534509-9534528 Msa0236560:CDS 45.0%
! GTTGGTAGGACCAGTAAATG+TGG - chr2_2:9534522-9534541 None:intergenic 45.0%
! GTAGTGGTTTCGATTTGAGG+TGG - chr2_2:9534563-9534582 None:intergenic 45.0%
CAAAGTGGTGTGACACTTAG+AGG - chr2_2:9534602-9534621 None:intergenic 45.0%
! ATAATGGGGGTAATGGTAGG+GGG - chr2_2:9534908-9534927 Msa0236570:CDS 45.0%
!! GATAATGGGGGTAATGGTAG+GGG - chr2_2:9534909-9534928 Msa0236570:CDS 45.0%
!! GTGATAATGGGGGTAATGGT+AGG - chr2_2:9534911-9534930 Msa0236570:CDS 45.0%
!! TACAGTGGCAGTGATAATGG+GGG - chr2_2:9534921-9534940 Msa0236570:CDS 45.0%
! AGATATGATAGGGGTAGTGG+TGG - chr2_2:9534954-9534973 Msa0236570:CDS 45.0%
AGCAGATATGATAGGGGTAG+TGG - chr2_2:9534957-9534976 Msa0236570:CDS 45.0%
GGTTGGATGCACGATCAAAA+TGG - chr2_2:9535138-9535157 None:intergenic 45.0%
! AGATATGATTGGGGTAGTGG+TGG - chr2_2:9535182-9535201 Msa0236580:CDS 45.0%
AGCAGATATGATTGGGGTAG+TGG - chr2_2:9535185-9535204 Msa0236580:CDS 45.0%
! GTTTTTGTCCAGCGTGCATT+GGG - chr2_2:9535273-9535292 Msa0236580:CDS 45.0%
!! TGTTTTTGTCCAGCGTGCAT+TGG - chr2_2:9535274-9535293 Msa0236580:CDS 45.0%
!! TGGCATTGGTGTGCTATATG+AGG + chr2_2:9535566-9535585 Msa0236560:CDS 45.0%
!! GGCATTGGTGTGCTATATGA+GGG + chr2_2:9535567-9535586 Msa0236560:CDS 45.0%
GGATGTGGAGACCCTTTAAT+GGG - chr2_2:9535643-9535662 None:intergenic 45.0%
!! AGGGTGCGAGTGTTTGTTTT+AGG - chr2_2:9535742-9535761 None:intergenic 45.0%
TTACACTCTGCGGAAGAAAC+TGG + chr2_2:9536120-9536139 Msa0236560:CDS 45.0%
AAATCCAGGTTCCCCTAGTA+TGG + chr2_2:9536161-9536180 Msa0236560:CDS 45.0%
CTGCAACATCACCATACTAG+GGG - chr2_2:9536175-9536194 None:intergenic 45.0%
GATGTTGCAGATCGATCATC+CGG + chr2_2:9536185-9536204 Msa0236560:CDS 45.0%
TGATTGATCAGCGAGAACCT+GGG - chr2_2:9536223-9536242 None:intergenic 45.0%
TTGATTGATCAGCGAGAACC+TGG - chr2_2:9536224-9536243 None:intergenic 45.0%
TTACCCTCTGTGGAAGAAGT+TGG + chr2_2:9536282-9536301 Msa0236560:CDS 45.0%
GATCCAACTTCTTCCACAGA+GGG - chr2_2:9536288-9536307 None:intergenic 45.0%
TGATCCAACTTCTTCCACAG+AGG - chr2_2:9536289-9536308 None:intergenic 45.0%
GCCCCAATGTAGCAATGTTA+CGG + chr2_2:9536365-9536384 Msa0236560:CDS 45.0%
CCCGTAACATTGCTACATTG+GGG - chr2_2:9536369-9536388 None:intergenic 45.0%
CCCCAATGTAGCAATGTTAC+GGG + chr2_2:9536366-9536385 Msa0236560:CDS 45.0%
CACCCGTAACATTGCTACAT+TGG - chr2_2:9536371-9536390 None:intergenic 45.0%
ATGGACTTCAAGTGCCTCAA+TGG + chr2_2:9536501-9536520 Msa0236560:CDS 45.0%
! GTGGTTTCGATTTGAGGTGG+CGG - chr2_2:9534560-9534579 None:intergenic 50.0%
ATACTAGTGGGAGCTGAGGT+GGG - chr2_2:9534734-9534753 None:intergenic 50.0%
! GTGGTGGGAATAGTGATGGT+GGG - chr2_2:9534884-9534903 Msa0236570:CDS 50.0%
! AGTGGTGGGAATAGTGATGG+TGG - chr2_2:9534885-9534904 Msa0236570:CDS 50.0%
!! GGCAGTGATAATGGGGGTAA+TGG - chr2_2:9534915-9534934 Msa0236570:CDS 50.0%
! ATGATAGGGGTAGTGGTGGT+CGG - chr2_2:9534950-9534969 Msa0236570:CDS 50.0%
TGTTGTTGTCCAGCGGGTAT+TGG - chr2_2:9535046-9535065 Msa0236570:CDS 50.0%
GGATGCACGATCAAAATGGG+TGG - chr2_2:9535134-9535153 None:intergenic 50.0%
! GGCGATAACTGATGGATGGT+TGG - chr2_2:9535155-9535174 None:intergenic 50.0%
TCGAGGCGATAACTGATGGA+TGG - chr2_2:9535159-9535178 None:intergenic 50.0%
! CATCCATCGGTTGCACTATG+CGG + chr2_2:9535385-9535404 Msa0236560:CDS 50.0%
ATGAGCTTCCAAAAGACCCG+TGG + chr2_2:9535593-9535612 Msa0236560:CDS 50.0%
TGAGCTTCCAAAAGACCCGT+GGG + chr2_2:9535594-9535613 Msa0236560:CDS 50.0%
CATATTTCCTCCATGCCCAC+GGG - chr2_2:9535612-9535631 None:intergenic 50.0%
CCATATTTCCTCCATGCCCA+CGG - chr2_2:9535613-9535632 None:intergenic 50.0%
CGTGGGCATGGAGGAAATAT+GGG + chr2_2:9535611-9535630 Msa0236560:CDS 50.0%
CGGATGTGGAGACCCTTTAA+TGG - chr2_2:9535644-9535663 None:intergenic 50.0%
TTAAAGGGTCTCCACATCCG+AGG + chr2_2:9535644-9535663 Msa0236560:CDS 50.0%
ATCACCATACTAGGGGAACC+TGG - chr2_2:9536168-9536187 None:intergenic 50.0%
AGAGAGTCACTTACCCTCTG+TGG + chr2_2:9536272-9536291 Msa0236560:CDS 50.0%
GACTTCAAGTGCCTCAATGG+TGG + chr2_2:9536504-9536523 Msa0236560:CDS 50.0%
GGAATATAGCGCCACCATTG+AGG - chr2_2:9536518-9536537 None:intergenic 50.0%
! GTGGTTTCGATTTGAGGTGG+CGG - chr2_2:9534560-9534579 None:intergenic 50.0%
ATACTAGTGGGAGCTGAGGT+GGG - chr2_2:9534734-9534753 None:intergenic 50.0%
! GTGGTGGGAATAGTGATGGT+GGG - chr2_2:9534884-9534903 Msa0236570:CDS 50.0%
! AGTGGTGGGAATAGTGATGG+TGG - chr2_2:9534885-9534904 Msa0236570:CDS 50.0%
!! GGCAGTGATAATGGGGGTAA+TGG - chr2_2:9534915-9534934 Msa0236570:CDS 50.0%
! ATGATAGGGGTAGTGGTGGT+CGG - chr2_2:9534950-9534969 Msa0236570:CDS 50.0%
TGTTGTTGTCCAGCGGGTAT+TGG - chr2_2:9535046-9535065 Msa0236570:CDS 50.0%
GGATGCACGATCAAAATGGG+TGG - chr2_2:9535134-9535153 None:intergenic 50.0%
! GGCGATAACTGATGGATGGT+TGG - chr2_2:9535155-9535174 None:intergenic 50.0%
TCGAGGCGATAACTGATGGA+TGG - chr2_2:9535159-9535178 None:intergenic 50.0%
! CATCCATCGGTTGCACTATG+CGG + chr2_2:9535385-9535404 Msa0236560:CDS 50.0%
ATGAGCTTCCAAAAGACCCG+TGG + chr2_2:9535593-9535612 Msa0236560:CDS 50.0%
TGAGCTTCCAAAAGACCCGT+GGG + chr2_2:9535594-9535613 Msa0236560:CDS 50.0%
CATATTTCCTCCATGCCCAC+GGG - chr2_2:9535612-9535631 None:intergenic 50.0%
CCATATTTCCTCCATGCCCA+CGG - chr2_2:9535613-9535632 None:intergenic 50.0%
CGTGGGCATGGAGGAAATAT+GGG + chr2_2:9535611-9535630 Msa0236560:CDS 50.0%
CGGATGTGGAGACCCTTTAA+TGG - chr2_2:9535644-9535663 None:intergenic 50.0%
TTAAAGGGTCTCCACATCCG+AGG + chr2_2:9535644-9535663 Msa0236560:CDS 50.0%
ATCACCATACTAGGGGAACC+TGG - chr2_2:9536168-9536187 None:intergenic 50.0%
AGAGAGTCACTTACCCTCTG+TGG + chr2_2:9536272-9536291 Msa0236560:CDS 50.0%
GACTTCAAGTGCCTCAATGG+TGG + chr2_2:9536504-9536523 Msa0236560:CDS 50.0%
GGAATATAGCGCCACCATTG+AGG - chr2_2:9536518-9536537 None:intergenic 50.0%
! GTTTCGATTTGAGGTGGCGG+TGG - chr2_2:9534557-9534576 None:intergenic 55.0%
TACTAGTGGGAGCTGAGGTG+GGG - chr2_2:9534733-9534752 None:intergenic 55.0%
CATACTAGTGGGAGCTGAGG+TGG - chr2_2:9534735-9534754 None:intergenic 55.0%
TGGCATACTAGTGGGAGCTG+AGG - chr2_2:9534738-9534757 Msa0236570:CDS 55.0%
!! ATAGTGTAGGTGGTGGTGGC+GGG - chr2_2:9534788-9534807 Msa0236570:CDS 55.0%
!! GATAGTGTAGGTGGTGGTGG+CGG - chr2_2:9534789-9534808 Msa0236570:CDS 55.0%
! TGGGATAGTGTAGGTGGTGG+TGG - chr2_2:9534792-9534811 Msa0236570:CDS 55.0%
GTTAGTGATGTGGGTGGGGA+TGG - chr2_2:9534831-9534850 Msa0236570:CDS 55.0%
! GGGAGTGGTGGGAATAGTGA+TGG - chr2_2:9534888-9534907 Msa0236570:CDS 55.0%
GTAATGGTAGGGGGAGTGGT+GGG - chr2_2:9534899-9534918 Msa0236570:CDS 55.0%
! TGATAGGGGTAGTGGTGGTC+GGG - chr2_2:9534949-9534968 Msa0236570:CDS 55.0%
GTGGTCGAGGCGATAACTGA+TGG - chr2_2:9535163-9535182 Msa0236580:CDS 55.0%
CGCATAGTGCAACCGATGGA+TGG - chr2_2:9535387-9535406 None:intergenic 55.0%
GATCCGCATAGTGCAACCGA+TGG - chr2_2:9535391-9535410 None:intergenic 55.0%
TTCCAAAAGACCCGTGGGCA+TGG + chr2_2:9535599-9535618 Msa0236560:CDS 55.0%
CCGTGGGCATGGAGGAAATA+TGG + chr2_2:9535610-9535629 Msa0236560:CDS 55.0%
TACATCCCAGCGCAAGTCAC+TGG + chr2_2:9536089-9536108 Msa0236560:CDS 55.0%
! AGTCTCCAGTGACTTGCGCT+GGG - chr2_2:9536097-9536116 None:intergenic 55.0%
AGCGCAAGTCACTGGAGACT+GGG + chr2_2:9536097-9536116 Msa0236560:CDS 55.0%
GGAGACTGGGTTACACTCTG+CGG + chr2_2:9536110-9536129 Msa0236560:CDS 55.0%
! ACCTGGGTATTGCTGCTCTC+CGG - chr2_2:9536207-9536226 None:intergenic 55.0%
! GTTTCGATTTGAGGTGGCGG+TGG - chr2_2:9534557-9534576 None:intergenic 55.0%
TACTAGTGGGAGCTGAGGTG+GGG - chr2_2:9534733-9534752 None:intergenic 55.0%
CATACTAGTGGGAGCTGAGG+TGG - chr2_2:9534735-9534754 None:intergenic 55.0%
TGGCATACTAGTGGGAGCTG+AGG - chr2_2:9534738-9534757 Msa0236570:CDS 55.0%
!! ATAGTGTAGGTGGTGGTGGC+GGG - chr2_2:9534788-9534807 Msa0236570:CDS 55.0%
!! GATAGTGTAGGTGGTGGTGG+CGG - chr2_2:9534789-9534808 Msa0236570:CDS 55.0%
! TGGGATAGTGTAGGTGGTGG+TGG - chr2_2:9534792-9534811 Msa0236570:CDS 55.0%
GTTAGTGATGTGGGTGGGGA+TGG - chr2_2:9534831-9534850 Msa0236570:CDS 55.0%
! GGGAGTGGTGGGAATAGTGA+TGG - chr2_2:9534888-9534907 Msa0236570:CDS 55.0%
GTAATGGTAGGGGGAGTGGT+GGG - chr2_2:9534899-9534918 Msa0236570:CDS 55.0%
! TGATAGGGGTAGTGGTGGTC+GGG - chr2_2:9534949-9534968 Msa0236570:CDS 55.0%
GTGGTCGAGGCGATAACTGA+TGG - chr2_2:9535163-9535182 Msa0236580:CDS 55.0%
CGCATAGTGCAACCGATGGA+TGG - chr2_2:9535387-9535406 None:intergenic 55.0%
GATCCGCATAGTGCAACCGA+TGG - chr2_2:9535391-9535410 None:intergenic 55.0%
TTCCAAAAGACCCGTGGGCA+TGG + chr2_2:9535599-9535618 Msa0236560:CDS 55.0%
CCGTGGGCATGGAGGAAATA+TGG + chr2_2:9535610-9535629 Msa0236560:CDS 55.0%
TACATCCCAGCGCAAGTCAC+TGG + chr2_2:9536089-9536108 Msa0236560:CDS 55.0%
! AGTCTCCAGTGACTTGCGCT+GGG - chr2_2:9536097-9536116 None:intergenic 55.0%
AGCGCAAGTCACTGGAGACT+GGG + chr2_2:9536097-9536116 Msa0236560:CDS 55.0%
GGAGACTGGGTTACACTCTG+CGG + chr2_2:9536110-9536129 Msa0236560:CDS 55.0%
! ACCTGGGTATTGCTGCTCTC+CGG - chr2_2:9536207-9536226 None:intergenic 55.0%
!! TAGTGTAGGTGGTGGTGGCG+GGG - chr2_2:9534787-9534806 Msa0236570:CDS 60.0%
GGGTGGGATAGTGTAGGTGG+TGG - chr2_2:9534795-9534814 Msa0236570:CDS 60.0%
CAAGGGGGGTGGGATAGTGT+AGG - chr2_2:9534801-9534820 Msa0236570:CDS 60.0%
!! TGGGGATGGTGGTGGTCAAG+GGG - chr2_2:9534817-9534836 Msa0236570:CDS 60.0%
!! GTGGGGATGGTGGTGGTCAA+GGG - chr2_2:9534818-9534837 Msa0236570:CDS 60.0%
AGTGATGTGGGTGGGGATGG+TGG - chr2_2:9534828-9534847 Msa0236570:CDS 60.0%
! GGTAATGGTAGGGGGAGTGG+TGG - chr2_2:9534900-9534919 Msa0236570:CDS 60.0%
GGTGGTCGGGGTGATTACAG+TGG - chr2_2:9534936-9534955 Msa0236570:CDS 60.0%
! GATAGGGGTAGTGGTGGTCG+GGG - chr2_2:9534948-9534967 Msa0236570:CDS 60.0%
! GATTGGGGTAGTGGTGGTCG+AGG - chr2_2:9535176-9535195 Msa0236580:CDS 60.0%
! CTCCATGCCCACGGGTCTTT+TGG - chr2_2:9535604-9535623 None:intergenic 60.0%
CAAAAGACCCGTGGGCATGG+AGG + chr2_2:9535602-9535621 Msa0236560:CDS 60.0%
! CAGTCTCCAGTGACTTGCGC+TGG - chr2_2:9536098-9536117 None:intergenic 60.0%
CAGCGCAAGTCACTGGAGAC+TGG + chr2_2:9536096-9536115 Msa0236560:CDS 60.0%
TCCGGAGAGCAGCAATACCC+AGG + chr2_2:9536203-9536222 Msa0236560:CDS 60.0%
!! TAGTGTAGGTGGTGGTGGCG+GGG - chr2_2:9534787-9534806 Msa0236570:CDS 60.0%
GGGTGGGATAGTGTAGGTGG+TGG - chr2_2:9534795-9534814 Msa0236570:CDS 60.0%
CAAGGGGGGTGGGATAGTGT+AGG - chr2_2:9534801-9534820 Msa0236570:CDS 60.0%
!! TGGGGATGGTGGTGGTCAAG+GGG - chr2_2:9534817-9534836 Msa0236570:CDS 60.0%
!! GTGGGGATGGTGGTGGTCAA+GGG - chr2_2:9534818-9534837 Msa0236570:CDS 60.0%
AGTGATGTGGGTGGGGATGG+TGG - chr2_2:9534828-9534847 Msa0236570:CDS 60.0%
! GGTAATGGTAGGGGGAGTGG+TGG - chr2_2:9534900-9534919 Msa0236570:CDS 60.0%
GGTGGTCGGGGTGATTACAG+TGG - chr2_2:9534936-9534955 Msa0236570:CDS 60.0%
! GATAGGGGTAGTGGTGGTCG+GGG - chr2_2:9534948-9534967 Msa0236570:CDS 60.0%
! GATTGGGGTAGTGGTGGTCG+AGG - chr2_2:9535176-9535195 Msa0236580:CDS 60.0%
! CTCCATGCCCACGGGTCTTT+TGG - chr2_2:9535604-9535623 None:intergenic 60.0%
CAAAAGACCCGTGGGCATGG+AGG + chr2_2:9535602-9535621 Msa0236560:CDS 60.0%
! CAGTCTCCAGTGACTTGCGC+TGG - chr2_2:9536098-9536117 None:intergenic 60.0%
CAGCGCAAGTCACTGGAGAC+TGG + chr2_2:9536096-9536115 Msa0236560:CDS 60.0%
TCCGGAGAGCAGCAATACCC+AGG + chr2_2:9536203-9536222 Msa0236560:CDS 60.0%
GTGGGAGCTGAGGTGGGGAT+GGG - chr2_2:9534728-9534747 None:intergenic 65.0%
AGTGGGAGCTGAGGTGGGGA+TGG - chr2_2:9534729-9534748 None:intergenic 65.0%
!! AGTGTAGGTGGTGGTGGCGG+GGG - chr2_2:9534786-9534805 Msa0236570:CDS 65.0%
GGGGGGTGGGATAGTGTAGG+TGG - chr2_2:9534798-9534817 Msa0236570:CDS 65.0%
!! TGGTGGTGGTCAAGGGGGGT+GGG - chr2_2:9534811-9534830 Msa0236570:CDS 65.0%
!! ATGGTGGTGGTCAAGGGGGG+TGG - chr2_2:9534812-9534831 Msa0236570:CDS 65.0%
!! GGGATGGTGGTGGTCAAGGG+GGG - chr2_2:9534815-9534834 Msa0236570:CDS 65.0%
!! GGGGATGGTGGTGGTCAAGG+GGG - chr2_2:9534816-9534835 Msa0236570:CDS 65.0%
!! GGTGGGGATGGTGGTGGTCA+AGG - chr2_2:9534819-9534838 Msa0236570:CDS 65.0%
! GATGTGGGTGGGGATGGTGG+TGG - chr2_2:9534825-9534844 Msa0236570:CDS 65.0%
! GGGGGTAATGGTAGGGGGAG+TGG - chr2_2:9534903-9534922 Msa0236570:CDS 65.0%
GTGGGAGCTGAGGTGGGGAT+GGG - chr2_2:9534728-9534747 None:intergenic 65.0%
AGTGGGAGCTGAGGTGGGGA+TGG - chr2_2:9534729-9534748 None:intergenic 65.0%
!! AGTGTAGGTGGTGGTGGCGG+GGG - chr2_2:9534786-9534805 Msa0236570:CDS 65.0%
GGGGGGTGGGATAGTGTAGG+TGG - chr2_2:9534798-9534817 Msa0236570:CDS 65.0%
!! TGGTGGTGGTCAAGGGGGGT+GGG - chr2_2:9534811-9534830 Msa0236570:CDS 65.0%
!! ATGGTGGTGGTCAAGGGGGG+TGG - chr2_2:9534812-9534831 Msa0236570:CDS 65.0%
!! GGGATGGTGGTGGTCAAGGG+GGG - chr2_2:9534815-9534834 Msa0236570:CDS 65.0%
!! GGGGATGGTGGTGGTCAAGG+GGG - chr2_2:9534816-9534835 Msa0236570:CDS 65.0%
!! GGTGGGGATGGTGGTGGTCA+AGG - chr2_2:9534819-9534838 Msa0236570:CDS 65.0%
! GATGTGGGTGGGGATGGTGG+TGG - chr2_2:9534825-9534844 Msa0236570:CDS 65.0%
! GGGGGTAATGGTAGGGGGAG+TGG - chr2_2:9534903-9534922 Msa0236570:CDS 65.0%
GGCGGGGGAAGATGTGGTGG+TGG - chr2_2:9534771-9534790 Msa0236570:CDS 70.0%
!! GGTGGCGGGGGAAGATGTGG+TGG - chr2_2:9534774-9534793 Msa0236570:CDS 70.0%
!! GGTGGTGGCGGGGGAAGATG+TGG - chr2_2:9534777-9534796 Msa0236570:CDS 70.0%
GGCGGGGGAAGATGTGGTGG+TGG - chr2_2:9534771-9534790 Msa0236570:CDS 70.0%
!! GGTGGCGGGGGAAGATGTGG+TGG - chr2_2:9534774-9534793 Msa0236570:CDS 70.0%
!! GGTGGTGGCGGGGGAAGATG+TGG - chr2_2:9534777-9534796 Msa0236570:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 9534467 9536542 9534467 ID=Msa0236560;Name=Msa0236560
chr2_2 mRNA 9534467 9536542 9534467 ID=Msa0236560-mRNA-1;Parent=Msa0236560;Name=Msa0236560-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|556
chr2_2 exon 9534467 9535419 9534467 ID=Msa0236560-mRNA-1:exon:4116;Parent=Msa0236560-mRNA-1
chr2_2 exon 9535549 9535665 9535549 ID=Msa0236560-mRNA-1:exon:4117;Parent=Msa0236560-mRNA-1
chr2_2 exon 9535942 9536542 9535942 ID=Msa0236560-mRNA-1:exon:4118;Parent=Msa0236560-mRNA-1
chr2_2 CDS 9534467 9535419 9534467 ID=Msa0236560-mRNA-1:cds;Parent=Msa0236560-mRNA-1
chr2_2 CDS 9535549 9535665 9535549 ID=Msa0236560-mRNA-1:cds;Parent=Msa0236560-mRNA-1
chr2_2 CDS 9535942 9536542 9535942 ID=Msa0236560-mRNA-1:cds;Parent=Msa0236560-mRNA-1
Gene Sequence

>Msa0236560

ATGGATAATGATGATCGAGATCTCTTTTCTATTGTTCGTAGTTGCAACGCTACCACATTTACTGGTCCTACCAACATTTTTGAAAATCCACCGCCACCTCAAATCGAAACCACTACCAATAACATCACATTCCCTCTAAGTGTCACACCACTTTGCTATGATGATTTTACTTTTAACCAAGAAAATAGTTCAGTCTCTTTTGCCCCACTTAAACCAAATGACTTCATAGATCTAGATAAATTGATGATCAATTTCAATCCCATCCCCACCTCAGCTCCCACTAGTATGCCAAAAATCAATACCACCACCACATCTTCCCCCGCCACCACCACCTACACTATCCCACCCCCCTTGACCACCACCATCCCCACCCACATCACTAACATTAACACTAGTGTTCATATTATCAACACTCCCACCATCACTATTCCCACCACTCCCCCTACCATTACCCCCATTATCACTGCCACTGTAATCACCCCGACCACCACTACCCCTATCATATCTGCTACAAGCACTACCCTGATAAACACTAGTGTTCATGAAACCAATCAATATCCCGCCAATTATAATTTTCCAATACCCGCTGGACAACAACAAATTCAACAAAACATCAACAATCAAGTGTCTGTTCCCAAACATGTTGCATGCATTGATATCACAGCCACCCATTTTGATCGTGCATCCAACCATCCATCAGTTATCGCCTCGACCACCACTACCCCAATCATATCTGCTAAGAGCACTACCATGACAAACACCAGTGTTCATGAAACCAATCAATATCCCACAAATTATAATTTCCCAATGCACGCTGGACAAAAACAGATTCAACAAAACATCAACAATCAAGTGTCTGTTCCCAAACATGTTGCATGCATTGATATCACAACCACTCATTTTGAACGTGCATATAACCATCCATCGGTTGCACTATGCGGATCAAGAAAAAGAAAACATAATAACCAAATGGCATTGGTGTGCTATATGAGGGACGATGAGCTTCCAAAAGACCCGTGGGCATGGAGGAAATATGGGCAAAAACCCATTAAAGGGTCTCCACATCCGAGGAGCTATTACAAATGTAGCACTTGGTCAGATTGTCCAGCAAGAAGAAAGGTTGAAAAATGCAAAACTCAAGAGAACACTTATATTGTAACATATGAAGGAGAGCACAATCATGCAAAGCCAACATTTAATAAGAATGTTGTTGTTGGTACATCCCAGCGCAAGTCACTGGAGACTGGGTTACACTCTGCGGAAGAAACTGGATCATCTACAAACATCACAAATCCAGGTTCCCCTAGTATGGTGATGTTGCAGATCGATCATCCGGAGAGCAGCAATACCCAGGTTCTCGCTGATCAATCAAAAATCCTTTATCCAGAAATAGAACTATTAGAGAGTCACTTACCCTCTGTGGAAGAAGTTGGATCATCCTTAAATGCTAGAAATTTGGGTTCACATAACAAAATGATTATGCAATTTGATGAGCCCCAATGTAGCAATGTTACGGGTGTTGTCGATGACTCAAACCTCCCTTATTCTGAAACTGGATTCATTGGAAGCTTTGATGATAATGATGACATTTTGATACCAAACATAACAGCTTGGTCAGAAGATTATTTAATGGACTTCAAGTGCCTCAATGGTGGCGCTATATTCCCTTAG
Protein sequence

>Msa0236560

MDNDDRDLFSIVRSCNATTFTGPTNIFENPPPPQIETTTNNITFPLSVTPLCYDDFTFNQENSSVSFAPLKPNDFIDLDKLMINFNPIPTSAPTSMPKINTTTTSSPATTTYTIPPPLTTTIPTHITNINTSVHIINTPTITIPTTPPTITPIITATVITPTTTTPIISATSTTLINTSVHETNQYPANYNFPIPAGQQQIQQNINNQVSVPKHVACIDITATHFDRASNHPSVIASTTTTPIISAKSTTMTNTSVHETNQYPTNYNFPMHAGQKQIQQNINNQVSVPKHVACIDITTTHFERAYNHPSVALCGSRKRKHNNQMALVCYMRDDELPKDPWAWRKYGQKPIKGSPHPRSYYKCSTWSDCPARRKVEKCKTQENTYIVTYEGEHNHAKPTFNKNVVVGTSQRKSLETGLHSAEETGSSTNITNPGSPSMVMLQIDHPESSNTQVLADQSKILYPEIELLESHLPSVEEVGSSLNARNLGSHNKMIMQFDEPQCSNVTGVVDDSNLPYSETGFIGSFDDNDDILIPNITAWSEDYLMDFKCLNGGAIFP*