Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0237050 | XP_003593962.1 | 82.888 | 374 | 55 | 2 | 1 | 373 | 1 | 366 | 0.0 | 609 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0237050 | G7IPZ5 | 82.888 | 374 | 55 | 2 | 1 | 373 | 1 | 366 | 0.0 | 609 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0237050 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0237050 | MtrunA17_Chr2g0286191 | 82.888 | 374 | 55 | 2 | 1 | 373 | 1 | 366 | 0.0 | 609 |
| Msa0237050 | MtrunA17_Chr2g0295761 | 47.826 | 345 | 165 | 5 | 30 | 366 | 52 | 389 | 3.91e-102 | 307 |
| Msa0237050 | MtrunA17_Chr2g0295731 | 45.723 | 339 | 178 | 4 | 32 | 366 | 41 | 377 | 1.52e-98 | 297 |
| Msa0237050 | MtrunA17_Chr2g0295741 | 45.706 | 361 | 184 | 6 | 12 | 366 | 22 | 376 | 7.82e-98 | 296 |
| Msa0237050 | MtrunA17_Chr4g0067121 | 46.291 | 337 | 176 | 4 | 33 | 366 | 46 | 380 | 1.19e-96 | 293 |
| Msa0237050 | MtrunA17_Chr2g0296121 | 45.304 | 362 | 192 | 4 | 9 | 366 | 97 | 456 | 8.22e-96 | 293 |
| Msa0237050 | MtrunA17_Chr2g0296151 | 45.658 | 357 | 179 | 6 | 14 | 366 | 25 | 370 | 9.86e-95 | 288 |
| Msa0237050 | MtrunA17_Chr2g0296111 | 45.430 | 372 | 181 | 7 | 6 | 366 | 10 | 370 | 2.91e-90 | 276 |
| Msa0237050 | MtrunA17_Chr2g0296301 | 41.880 | 351 | 201 | 3 | 18 | 365 | 15 | 365 | 4.15e-88 | 271 |
| Msa0237050 | MtrunA17_Chr2g0286221 | 76.074 | 163 | 39 | 0 | 208 | 370 | 11 | 173 | 2.82e-86 | 259 |
| Msa0237050 | MtrunA17_Chr2g0296711 | 41.954 | 348 | 183 | 7 | 38 | 373 | 53 | 393 | 1.05e-81 | 256 |
| Msa0237050 | MtrunA17_Chr2g0296291 | 39.037 | 374 | 186 | 6 | 33 | 366 | 27 | 398 | 2.60e-77 | 244 |
| Msa0237050 | MtrunA17_Chr4g0067671 | 41.768 | 328 | 175 | 6 | 30 | 349 | 36 | 355 | 3.74e-77 | 242 |
| Msa0237050 | MtrunA17_Chr2g0296191 | 40.710 | 366 | 200 | 5 | 7 | 365 | 154 | 509 | 2.05e-76 | 254 |
| Msa0237050 | MtrunA17_Chr2g0296191 | 39.828 | 349 | 189 | 8 | 29 | 363 | 653 | 994 | 3.05e-65 | 223 |
| Msa0237050 | MtrunA17_Chr2g0296251 | 38.889 | 396 | 188 | 7 | 17 | 366 | 11 | 398 | 2.69e-76 | 241 |
| Msa0237050 | MtrunA17_Chr4g0067141 | 40.169 | 356 | 198 | 5 | 22 | 370 | 28 | 375 | 4.35e-76 | 239 |
| Msa0237050 | MtrunA17_Chr2g0296741 | 39.286 | 364 | 198 | 9 | 17 | 366 | 49 | 403 | 1.41e-73 | 234 |
| Msa0237050 | MtrunA17_Chr2g0315731 | 40.230 | 348 | 195 | 7 | 28 | 366 | 60 | 403 | 2.28e-73 | 234 |
| Msa0237050 | MtrunA17_Chr2g0296721 | 40.000 | 345 | 199 | 6 | 28 | 366 | 40 | 382 | 1.44e-71 | 229 |
| Msa0237050 | MtrunA17_Chr2g0296221 | 40.000 | 360 | 195 | 8 | 21 | 366 | 62 | 414 | 1.73e-71 | 229 |
| Msa0237050 | MtrunA17_Chr2g0296231 | 40.580 | 345 | 184 | 8 | 34 | 366 | 45 | 380 | 3.15e-71 | 228 |
| Msa0237050 | MtrunA17_Chr2g0296171 | 40.000 | 345 | 186 | 8 | 38 | 368 | 60 | 397 | 4.60e-69 | 223 |
| Msa0237050 | MtrunA17_Chr4g0001831 | 36.648 | 352 | 216 | 4 | 22 | 367 | 21 | 371 | 8.06e-67 | 216 |
| Msa0237050 | MtrunA17_Chr2g0296181 | 38.416 | 341 | 176 | 6 | 32 | 366 | 45 | 357 | 7.07e-63 | 206 |
| Msa0237050 | MtrunA17_Chr2g0296131 | 48.366 | 153 | 77 | 2 | 215 | 365 | 9 | 161 | 2.60e-42 | 145 |
| Msa0237050 | MtrunA17_Chr2g0296551 | 44.505 | 182 | 97 | 3 | 187 | 366 | 5 | 184 | 3.92e-42 | 146 |
| Msa0237050 | MtrunA17_Chr2g0296161 | 50.000 | 156 | 76 | 2 | 213 | 366 | 3 | 158 | 5.88e-42 | 144 |
| Msa0237050 | MtrunA17_Chr2g0296211 | 34.708 | 291 | 159 | 8 | 98 | 366 | 77 | 358 | 3.99e-40 | 145 |
| Msa0237050 | MtrunA17_Chr2g0296701 | 48.684 | 152 | 76 | 2 | 217 | 366 | 5 | 156 | 7.78e-39 | 136 |
| Msa0237050 | MtrunA17_Chr8g0377781 | 30.655 | 336 | 225 | 6 | 31 | 360 | 35 | 368 | 1.18e-36 | 136 |
| Msa0237050 | MtrunA17_Chr2g0295711 | 44.231 | 156 | 85 | 1 | 32 | 185 | 40 | 195 | 3.25e-36 | 130 |
| Msa0237050 | MtrunA17_Chr8g0377801 | 28.235 | 340 | 236 | 6 | 31 | 364 | 48 | 385 | 8.60e-35 | 132 |
| Msa0237050 | MtrunA17_Chr2g0295751 | 46.452 | 155 | 79 | 2 | 12 | 164 | 23 | 175 | 1.56e-34 | 132 |
| Msa0237050 | MtrunA17_Chr2g0296751 | 50.394 | 127 | 62 | 1 | 241 | 366 | 3 | 129 | 1.99e-33 | 122 |
| Msa0237050 | MtrunA17_Chr2g0295721 | 51.754 | 114 | 54 | 1 | 213 | 325 | 3 | 116 | 3.78e-32 | 117 |
| Msa0237050 | MtrunA17_Chr2g0296561 | 40.506 | 158 | 81 | 4 | 7 | 159 | 3 | 152 | 3.36e-23 | 94.4 |
| Msa0237050 | MtrunA17_Chr4g0067131 | 46.914 | 81 | 42 | 1 | 283 | 362 | 1 | 81 | 5.08e-17 | 75.5 |
| Msa0237050 | MtrunA17_Chr8g0339041 | 21.122 | 303 | 210 | 10 | 81 | 367 | 62 | 351 | 6.07e-13 | 69.3 |
| Msa0237050 | MtrunA17_Chr4g0067681 | 48.333 | 60 | 31 | 0 | 272 | 331 | 1 | 60 | 3.40e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0237050 | AT5G07900.1 | 37.725 | 334 | 202 | 4 | 36 | 363 | 66 | 399 | 9.87e-75 | 237 |
| Msa0237050 | AT1G21150.1 | 34.524 | 336 | 214 | 3 | 38 | 367 | 55 | 390 | 1.04e-58 | 195 |
| Msa0237050 | AT1G21150.2 | 34.524 | 336 | 214 | 3 | 38 | 367 | 119 | 454 | 7.13e-58 | 195 |
| Msa0237050 | AT1G21150.3 | 33.731 | 335 | 216 | 3 | 39 | 367 | 20 | 354 | 8.02e-57 | 189 |
| Msa0237050 | AT1G61980.3 | 29.032 | 372 | 215 | 10 | 36 | 363 | 49 | 415 | 1.36e-40 | 148 |
| Msa0237050 | AT1G61980.2 | 29.032 | 372 | 215 | 10 | 36 | 363 | 49 | 415 | 1.36e-40 | 148 |
| Msa0237050 | AT1G61980.1 | 29.032 | 372 | 215 | 10 | 36 | 363 | 49 | 415 | 1.36e-40 | 148 |
| Msa0237050 | AT1G62120.1 | 27.604 | 384 | 227 | 11 | 30 | 367 | 47 | 425 | 4.96e-40 | 147 |
| Msa0237050 | AT1G61970.2 | 27.882 | 373 | 218 | 10 | 36 | 363 | 49 | 415 | 2.17e-37 | 139 |
| Msa0237050 | AT1G61970.7 | 27.882 | 373 | 218 | 10 | 36 | 363 | 49 | 415 | 2.17e-37 | 139 |
| Msa0237050 | AT1G61970.6 | 27.882 | 373 | 218 | 10 | 36 | 363 | 49 | 415 | 2.17e-37 | 139 |
| Msa0237050 | AT1G61970.3 | 27.882 | 373 | 218 | 10 | 36 | 363 | 49 | 415 | 2.17e-37 | 139 |
| Msa0237050 | AT1G61970.5 | 27.882 | 373 | 218 | 10 | 36 | 363 | 49 | 415 | 2.17e-37 | 139 |
| Msa0237050 | AT1G61970.4 | 27.882 | 373 | 218 | 10 | 36 | 363 | 49 | 415 | 2.17e-37 | 139 |
| Msa0237050 | AT1G61970.1 | 27.882 | 373 | 218 | 10 | 36 | 363 | 49 | 415 | 2.17e-37 | 139 |
| Msa0237050 | AT1G61990.2 | 28.455 | 369 | 214 | 10 | 36 | 363 | 49 | 408 | 2.93e-36 | 136 |
| Msa0237050 | AT1G61990.1 | 28.455 | 369 | 214 | 10 | 36 | 363 | 49 | 408 | 2.93e-36 | 136 |
| Msa0237050 | AT5G23930.1 | 28.212 | 397 | 205 | 9 | 36 | 359 | 52 | 441 | 3.97e-35 | 134 |
| Msa0237050 | AT1G62010.1 | 27.606 | 355 | 202 | 9 | 59 | 367 | 58 | 403 | 6.65e-35 | 133 |
| Msa0237050 | AT1G62085.1 | 28.074 | 431 | 228 | 13 | 16 | 367 | 32 | 459 | 7.22e-35 | 134 |
| Msa0237050 | AT1G62085.2 | 28.074 | 431 | 228 | 13 | 16 | 367 | 32 | 459 | 7.22e-35 | 134 |
| Msa0237050 | AT1G62110.1 | 27.378 | 431 | 212 | 13 | 30 | 370 | 43 | 462 | 1.39e-34 | 133 |
| Msa0237050 | AT1G61960.1 | 27.251 | 411 | 212 | 13 | 34 | 363 | 47 | 451 | 2.97e-34 | 132 |
| Msa0237050 | AT1G62150.1 | 26.570 | 414 | 221 | 12 | 33 | 367 | 52 | 461 | 1.86e-33 | 130 |
| Msa0237050 | AT3G46950.1 | 32.016 | 253 | 162 | 5 | 30 | 279 | 43 | 288 | 4.51e-33 | 128 |
| Msa0237050 | AT5G64950.1 | 27.424 | 361 | 241 | 9 | 20 | 364 | 21 | 376 | 1.62e-28 | 115 |
| Msa0237050 | AT1G56380.1 | 25.401 | 374 | 223 | 12 | 40 | 363 | 17 | 384 | 2.67e-22 | 97.4 |
| Msa0237050 | AT1G56380.2 | 25.824 | 364 | 216 | 11 | 40 | 355 | 28 | 385 | 3.00e-22 | 97.4 |
| Msa0237050 | AT1G79220.1 | 24.080 | 299 | 186 | 5 | 75 | 368 | 119 | 381 | 2.30e-15 | 77.4 |
Find 56 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTTCCCATACGGATTT+TGG | 0.131006 | 2_2:-10122192 | None:intergenic |
| CATAAGAAGTATTGGATATT+TGG | 0.165459 | 2_2:-10122367 | None:intergenic |
| GAAAGAAGGAAATTGAATTT+AGG | 0.170730 | 2_2:-10121799 | None:intergenic |
| TGACTGTAAAAGAGTGATTT+TGG | 0.173839 | 2_2:-10121579 | None:intergenic |
| AGACAACATAAGAGGATTTC+TGG | 0.180313 | 2_2:-10121860 | None:intergenic |
| ATTCAATTTCCTTCTTTCTA+AGG | 0.183402 | 2_2:+10121804 | Msa0237050:CDS |
| AAAGAAGGAAATTGAATTTA+GGG | 0.185509 | 2_2:-10121798 | None:intergenic |
| ATTCAATTCCTGCTTCAAAA+TGG | 0.189508 | 2_2:+10122012 | Msa0237050:CDS |
| GATGCTTCAACTTTCAAATA+AGG | 0.222209 | 2_2:+10122576 | Msa0237050:CDS |
| GAGAGTTTAGAAGCAGTTTC+TGG | 0.245687 | 2_2:-10121631 | None:intergenic |
| AATACTTCTTATGCTGAGTT+TGG | 0.261332 | 2_2:+10122377 | Msa0237050:CDS |
| TCAATCCAAAGGTTTGATTA+AGG | 0.262442 | 2_2:+10122440 | Msa0237050:CDS |
| GAGATGGGAATTTAGAATAA+AGG | 0.311834 | 2_2:-10121984 | None:intergenic |
| TTCAATTCCTGCTTCAAAAT+GGG | 0.338390 | 2_2:+10122013 | Msa0237050:CDS |
| AATAAGGCGATGACTGAATC+AGG | 0.360376 | 2_2:-10121685 | None:intergenic |
| AGTATTTGAGAAGGCAGTTT+TGG | 0.367653 | 2_2:+10122101 | Msa0237050:CDS |
| GATTAATGCGTATAAGAAAT+GGG | 0.369032 | 2_2:+10122215 | Msa0237050:CDS |
| TTTGATGAGAGATGATAATT+GGG | 0.380318 | 2_2:-10121731 | None:intergenic |
| AGATTAATGCGTATAAGAAA+TGG | 0.381339 | 2_2:+10122214 | Msa0237050:CDS |
| GAAATTGAATTTAGGGAGAA+TGG | 0.403378 | 2_2:-10121791 | None:intergenic |
| TTCAATTTCCTTCTTTCTAA+GGG | 0.407285 | 2_2:+10121805 | Msa0237050:CDS |
| AGCATCCTTAATCAAACCTT+TGG | 0.408692 | 2_2:-10122445 | None:intergenic |
| GAAACCATAGGATTTGAATA+AGG | 0.422117 | 2_2:-10121701 | None:intergenic |
| AAGCTTTGAGACAACATAAG+AGG | 0.427786 | 2_2:-10121868 | None:intergenic |
| AACTACCTCATTCAAAATTG+TGG | 0.437653 | 2_2:+10121601 | Msa0237050:CDS |
| TCTTATGTTGTCTCAAAGCT+TGG | 0.442901 | 2_2:+10121870 | Msa0237050:CDS |
| ATCGCCTTATTCAAATCCTA+TGG | 0.446132 | 2_2:+10121697 | Msa0237050:CDS |
| AAGAAGATGAAGAGTTATTG+AGG | 0.449182 | 2_2:-10121530 | None:intergenic |
| TTGAAGCACCCTTAGAAAGA+AGG | 0.450723 | 2_2:-10121813 | None:intergenic |
| AAACTCAGCATAAGAAGTAT+TGG | 0.453268 | 2_2:-10122375 | None:intergenic |
| ACTACCTCATTCAAAATTGT+GGG | 0.457092 | 2_2:+10121602 | Msa0237050:CDS |
| TCTTAGCATGCAGCGCGATA+AGG | 0.457183 | 2_2:-10122164 | None:intergenic |
| TTGAAATTTCTTCAATCCAA+AGG | 0.481678 | 2_2:+10122429 | Msa0237050:CDS |
| CAGAGACTTTGAAAGGTGTA+GGG | 0.502615 | 2_2:-10122473 | None:intergenic |
| ATTAATCTTCCTTTCCCATA+CGG | 0.515016 | 2_2:-10122199 | None:intergenic |
| TCAATTCCTGCTTCAAAATG+GGG | 0.519084 | 2_2:+10122014 | Msa0237050:CDS |
| GTCCAAAATCCGTATGGGAA+AGG | 0.543559 | 2_2:+10122190 | Msa0237050:CDS |
| ACTGCCTTCTCAAATACTGC+AGG | 0.547454 | 2_2:-10122096 | None:intergenic |
| AGATTAGTCCAAAATCCGTA+TGG | 0.549136 | 2_2:+10122184 | Msa0237050:CDS |
| GAAGTATCCATGGTGTATGT+TGG | 0.562557 | 2_2:+10122272 | Msa0237050:CDS |
| ATGGTGTATGTTGGCATCTG+TGG | 0.563796 | 2_2:+10122281 | Msa0237050:CDS |
| TCAGAGACTTTGAAAGGTGT+AGG | 0.564549 | 2_2:-10122474 | None:intergenic |
| ATCTCTCATCAAAACTCGCA+CGG | 0.575191 | 2_2:+10121741 | Msa0237050:CDS |
| TTTGATAAAATGATAACAAG+GGG | 0.581767 | 2_2:-10121905 | None:intergenic |
| AATTTCAACGCAAAAGCCCT+AGG | 0.586081 | 2_2:-10122414 | None:intergenic |
| GATTAGTCCAAAATCCGTAT+GGG | 0.594092 | 2_2:+10122185 | Msa0237050:CDS |
| ATTAATGCGTATAAGAAATG+GGG | 0.599170 | 2_2:+10122216 | Msa0237050:CDS |
| TTGGGAATTAGAGAAACCAT+AGG | 0.600081 | 2_2:-10121713 | None:intergenic |
| GAAACCTGCAGTATTTGAGA+AGG | 0.606941 | 2_2:+10122092 | Msa0237050:CDS |
| GAGATATGTGAATTGCTATG+AGG | 0.610774 | 2_2:+10122512 | Msa0237050:CDS |
| AGATCCTCAGAGACTTTGAA+AGG | 0.621290 | 2_2:-10122480 | None:intergenic |
| ATGCGTATAAGAAATGGGGT+TGG | 0.624037 | 2_2:+10122220 | Msa0237050:CDS |
| AGAGACTTTGAAAGGTGTAG+GGG | 0.645255 | 2_2:-10122472 | None:intergenic |
| TACACCTTTCAAAGTCTCTG+AGG | 0.664130 | 2_2:+10122476 | Msa0237050:CDS |
| ACAAGAGCAATGTTTGAGAG+CGG | 0.670001 | 2_2:-10121959 | None:intergenic |
| ACAGATGCCAACATACACCA+TGG | 0.670800 | 2_2:-10122279 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGATAAAATGATAACAA+GGG | - | chr2_2:10121909-10121928 | None:intergenic | 15.0% |
| !!! | TTTTGATAAAATGATAACAA+GGG | - | chr2_2:10121909-10121928 | None:intergenic | 15.0% |
| !! | AAAGAAGGAAATTGAATTTA+GGG | - | chr2_2:10121801-10121820 | None:intergenic | 20.0% |
| !! | TTTGATAAAATGATAACAAG+GGG | - | chr2_2:10121908-10121927 | None:intergenic | 20.0% |
| !!! | CTTTTGATAAAATGATAACA+AGG | - | chr2_2:10121910-10121929 | None:intergenic | 20.0% |
| !!! | AAAAAAACAATTTTGGATTC+AGG | - | chr2_2:10122042-10122061 | None:intergenic | 20.0% |
| !!! | TCGAAACAAAAAAACAATTT+TGG | - | chr2_2:10122049-10122068 | None:intergenic | 20.0% |
| !!! | TTGTTTTTTTGTTTCGAAAT+TGG | + | chr2_2:10122052-10122071 | Msa0237050:CDS | 20.0% |
| !! | AAAGAAGGAAATTGAATTTA+GGG | - | chr2_2:10121801-10121820 | None:intergenic | 20.0% |
| !! | TTTGATAAAATGATAACAAG+GGG | - | chr2_2:10121908-10121927 | None:intergenic | 20.0% |
| !!! | CTTTTGATAAAATGATAACA+AGG | - | chr2_2:10121910-10121929 | None:intergenic | 20.0% |
| !!! | AAAAAAACAATTTTGGATTC+AGG | - | chr2_2:10122042-10122061 | None:intergenic | 20.0% |
| !!! | TCGAAACAAAAAAACAATTT+TGG | - | chr2_2:10122049-10122068 | None:intergenic | 20.0% |
| !!! | TTGTTTTTTTGTTTCGAAAT+TGG | + | chr2_2:10122052-10122071 | Msa0237050:CDS | 20.0% |
| ! | TTTGATGAGAGATGATAATT+GGG | - | chr2_2:10121734-10121753 | None:intergenic | 25.0% |
| !! | TTTTGATGAGAGATGATAAT+TGG | - | chr2_2:10121735-10121754 | None:intergenic | 25.0% |
| ! | GAAAGAAGGAAATTGAATTT+AGG | - | chr2_2:10121802-10121821 | None:intergenic | 25.0% |
| ! | ATTCAATTTCCTTCTTTCTA+AGG | + | chr2_2:10121804-10121823 | Msa0237050:CDS | 25.0% |
| ! | TTCAATTTCCTTCTTTCTAA+GGG | + | chr2_2:10121805-10121824 | Msa0237050:CDS | 25.0% |
| !!! | GGAATTGAATATTTTGAGAT+GGG | - | chr2_2:10122002-10122021 | None:intergenic | 25.0% |
| !!! | AGGAATTGAATATTTTGAGA+TGG | - | chr2_2:10122003-10122022 | None:intergenic | 25.0% |
| !!! | GTTTTGGAAGTAAAACAATT+AGG | + | chr2_2:10122117-10122136 | Msa0237050:CDS | 25.0% |
| ! | ATAAGGAAAAACGTATTGTT+AGG | - | chr2_2:10122150-10122169 | None:intergenic | 25.0% |
| ! | AGATTAATGCGTATAAGAAA+TGG | + | chr2_2:10122214-10122233 | Msa0237050:CDS | 25.0% |
| ! | GATTAATGCGTATAAGAAAT+GGG | + | chr2_2:10122215-10122234 | Msa0237050:CDS | 25.0% |
| ! | ATTAATGCGTATAAGAAATG+GGG | + | chr2_2:10122216-10122235 | Msa0237050:CDS | 25.0% |
| !!! | CATAAGAAGTATTGGATATT+TGG | - | chr2_2:10122370-10122389 | None:intergenic | 25.0% |
| ! | TTGAAATTTCTTCAATCCAA+AGG | + | chr2_2:10122429-10122448 | Msa0237050:CDS | 25.0% |
| ! | TTTGATGAGAGATGATAATT+GGG | - | chr2_2:10121734-10121753 | None:intergenic | 25.0% |
| !! | TTTTGATGAGAGATGATAAT+TGG | - | chr2_2:10121735-10121754 | None:intergenic | 25.0% |
| ! | GAAAGAAGGAAATTGAATTT+AGG | - | chr2_2:10121802-10121821 | None:intergenic | 25.0% |
| ! | ATTCAATTTCCTTCTTTCTA+AGG | + | chr2_2:10121804-10121823 | Msa0237050:CDS | 25.0% |
| ! | TTCAATTTCCTTCTTTCTAA+GGG | + | chr2_2:10121805-10121824 | Msa0237050:CDS | 25.0% |
| !!! | GGAATTGAATATTTTGAGAT+GGG | - | chr2_2:10122002-10122021 | None:intergenic | 25.0% |
| !!! | AGGAATTGAATATTTTGAGA+TGG | - | chr2_2:10122003-10122022 | None:intergenic | 25.0% |
| !!! | GTTTTGGAAGTAAAACAATT+AGG | + | chr2_2:10122117-10122136 | Msa0237050:CDS | 25.0% |
| ! | ATAAGGAAAAACGTATTGTT+AGG | - | chr2_2:10122150-10122169 | None:intergenic | 25.0% |
| ! | AGATTAATGCGTATAAGAAA+TGG | + | chr2_2:10122214-10122233 | Msa0237050:CDS | 25.0% |
| ! | GATTAATGCGTATAAGAAAT+GGG | + | chr2_2:10122215-10122234 | Msa0237050:CDS | 25.0% |
| ! | ATTAATGCGTATAAGAAATG+GGG | + | chr2_2:10122216-10122235 | Msa0237050:CDS | 25.0% |
| !!! | CATAAGAAGTATTGGATATT+TGG | - | chr2_2:10122370-10122389 | None:intergenic | 25.0% |
| ! | TTGAAATTTCTTCAATCCAA+AGG | + | chr2_2:10122429-10122448 | Msa0237050:CDS | 25.0% |
| !!! | GAGTTATTGAGGTTTTGAAT+GGG | - | chr2_2:10121522-10121541 | None:intergenic | 30.0% |
| !!! | AGAGTTATTGAGGTTTTGAA+TGG | - | chr2_2:10121523-10121542 | None:intergenic | 30.0% |
| AAGAAGATGAAGAGTTATTG+AGG | - | chr2_2:10121533-10121552 | None:intergenic | 30.0% | |
| ! | GACTGTAAAAGAGTGATTTT+GGG | - | chr2_2:10121581-10121600 | None:intergenic | 30.0% |
| ! | TGACTGTAAAAGAGTGATTT+TGG | - | chr2_2:10121582-10121601 | None:intergenic | 30.0% |
| AACTACCTCATTCAAAATTG+TGG | + | chr2_2:10121601-10121620 | Msa0237050:CDS | 30.0% | |
| ACTACCTCATTCAAAATTGT+GGG | + | chr2_2:10121602-10121621 | Msa0237050:CDS | 30.0% | |
| ! | AAAACCCACAATTTTGAATG+AGG | - | chr2_2:10121609-10121628 | None:intergenic | 30.0% |
| GAAACCATAGGATTTGAATA+AGG | - | chr2_2:10121704-10121723 | None:intergenic | 30.0% | |
| GAAATTGAATTTAGGGAGAA+TGG | - | chr2_2:10121794-10121813 | None:intergenic | 30.0% | |
| ! | GAGATGGGAATTTAGAATAA+AGG | - | chr2_2:10121987-10122006 | None:intergenic | 30.0% |
| ATTCAATTCCTGCTTCAAAA+TGG | + | chr2_2:10122012-10122031 | Msa0237050:CDS | 30.0% | |
| TTCAATTCCTGCTTCAAAAT+GGG | + | chr2_2:10122013-10122032 | Msa0237050:CDS | 30.0% | |
| ATTAATCTTCCTTTCCCATA+CGG | - | chr2_2:10122202-10122221 | None:intergenic | 30.0% | |
| !!! | CAGTTTTTTGTCAATCACAT+GGG | + | chr2_2:10122324-10122343 | Msa0237050:CDS | 30.0% |
| ! | AAACTCAGCATAAGAAGTAT+TGG | - | chr2_2:10122378-10122397 | None:intergenic | 30.0% |
| AATACTTCTTATGCTGAGTT+TGG | + | chr2_2:10122377-10122396 | Msa0237050:CDS | 30.0% | |
| TTATGCTGAGTTTGGAAAAA+AGG | + | chr2_2:10122385-10122404 | Msa0237050:CDS | 30.0% | |
| TATGCTGAGTTTGGAAAAAA+GGG | + | chr2_2:10122386-10122405 | Msa0237050:CDS | 30.0% | |
| TCAATCCAAAGGTTTGATTA+AGG | + | chr2_2:10122440-10122459 | Msa0237050:CDS | 30.0% | |
| !!! | GAGTTATTGAGGTTTTGAAT+GGG | - | chr2_2:10121522-10121541 | None:intergenic | 30.0% |
| !!! | AGAGTTATTGAGGTTTTGAA+TGG | - | chr2_2:10121523-10121542 | None:intergenic | 30.0% |
| AAGAAGATGAAGAGTTATTG+AGG | - | chr2_2:10121533-10121552 | None:intergenic | 30.0% | |
| ! | GACTGTAAAAGAGTGATTTT+GGG | - | chr2_2:10121581-10121600 | None:intergenic | 30.0% |
| ! | TGACTGTAAAAGAGTGATTT+TGG | - | chr2_2:10121582-10121601 | None:intergenic | 30.0% |
| AACTACCTCATTCAAAATTG+TGG | + | chr2_2:10121601-10121620 | Msa0237050:CDS | 30.0% | |
| ACTACCTCATTCAAAATTGT+GGG | + | chr2_2:10121602-10121621 | Msa0237050:CDS | 30.0% | |
| ! | AAAACCCACAATTTTGAATG+AGG | - | chr2_2:10121609-10121628 | None:intergenic | 30.0% |
| GAAACCATAGGATTTGAATA+AGG | - | chr2_2:10121704-10121723 | None:intergenic | 30.0% | |
| GAAATTGAATTTAGGGAGAA+TGG | - | chr2_2:10121794-10121813 | None:intergenic | 30.0% | |
| ! | GAGATGGGAATTTAGAATAA+AGG | - | chr2_2:10121987-10122006 | None:intergenic | 30.0% |
| ATTCAATTCCTGCTTCAAAA+TGG | + | chr2_2:10122012-10122031 | Msa0237050:CDS | 30.0% | |
| TTCAATTCCTGCTTCAAAAT+GGG | + | chr2_2:10122013-10122032 | Msa0237050:CDS | 30.0% | |
| ATTAATCTTCCTTTCCCATA+CGG | - | chr2_2:10122202-10122221 | None:intergenic | 30.0% | |
| !!! | CAGTTTTTTGTCAATCACAT+GGG | + | chr2_2:10122324-10122343 | Msa0237050:CDS | 30.0% |
| ! | AAACTCAGCATAAGAAGTAT+TGG | - | chr2_2:10122378-10122397 | None:intergenic | 30.0% |
| AATACTTCTTATGCTGAGTT+TGG | + | chr2_2:10122377-10122396 | Msa0237050:CDS | 30.0% | |
| TTATGCTGAGTTTGGAAAAA+AGG | + | chr2_2:10122385-10122404 | Msa0237050:CDS | 30.0% | |
| TATGCTGAGTTTGGAAAAAA+GGG | + | chr2_2:10122386-10122405 | Msa0237050:CDS | 30.0% | |
| TCAATCCAAAGGTTTGATTA+AGG | + | chr2_2:10122440-10122459 | Msa0237050:CDS | 30.0% | |
| !!! | TATTGAGGTTTTGAATGGGA+GGG | - | chr2_2:10121518-10121537 | None:intergenic | 35.0% |
| !!! | TTATTGAGGTTTTGAATGGG+AGG | - | chr2_2:10121519-10121538 | None:intergenic | 35.0% |
| ! | ATCGCCTTATTCAAATCCTA+TGG | + | chr2_2:10121697-10121716 | Msa0237050:CDS | 35.0% |
| TTGGGAATTAGAGAAACCAT+AGG | - | chr2_2:10121716-10121735 | None:intergenic | 35.0% | |
| !!! | TTAGGGAGAATGGTTTTGTT+GGG | - | chr2_2:10121784-10121803 | None:intergenic | 35.0% |
| !!! | TTTAGGGAGAATGGTTTTGT+TGG | - | chr2_2:10121785-10121804 | None:intergenic | 35.0% |
| AGACAACATAAGAGGATTTC+TGG | - | chr2_2:10121863-10121882 | None:intergenic | 35.0% | |
| !! | AAGCTTTGAGACAACATAAG+AGG | - | chr2_2:10121871-10121890 | None:intergenic | 35.0% |
| TCTTATGTTGTCTCAAAGCT+TGG | + | chr2_2:10121870-10121889 | Msa0237050:CDS | 35.0% | |
| TCAATTCCTGCTTCAAAATG+GGG | + | chr2_2:10122014-10122033 | Msa0237050:CDS | 35.0% | |
| ! | AGTATTTGAGAAGGCAGTTT+TGG | + | chr2_2:10122101-10122120 | Msa0237050:CDS | 35.0% |
| ! | AGATTAGTCCAAAATCCGTA+TGG | + | chr2_2:10122184-10122203 | Msa0237050:CDS | 35.0% |
| ! | GATTAGTCCAAAATCCGTAT+GGG | + | chr2_2:10122185-10122204 | Msa0237050:CDS | 35.0% |
| !!! | CAGCATTTTTGAAGTATCCA+TGG | + | chr2_2:10122262-10122281 | Msa0237050:CDS | 35.0% |
| !!! | GCAGTTTTTTGTCAATCACA+TGG | + | chr2_2:10122323-10122342 | Msa0237050:CDS | 35.0% |
| ! | TTTTTGTCAATCACATGGGT+TGG | + | chr2_2:10122328-10122347 | Msa0237050:CDS | 35.0% |
| ! | TTTTGTCAATCACATGGGTT+GGG | + | chr2_2:10122329-10122348 | Msa0237050:CDS | 35.0% |
| TGGAAAAAAGGGTTATTCCT+AGG | + | chr2_2:10122397-10122416 | Msa0237050:CDS | 35.0% | |
| GGAAAAAAGGGTTATTCCTA+GGG | + | chr2_2:10122398-10122417 | Msa0237050:CDS | 35.0% | |
| AGCATCCTTAATCAAACCTT+TGG | - | chr2_2:10122448-10122467 | None:intergenic | 35.0% | |
| GAGATATGTGAATTGCTATG+AGG | + | chr2_2:10122512-10122531 | Msa0237050:CDS | 35.0% | |
| !!! | TATTGAGGTTTTGAATGGGA+GGG | - | chr2_2:10121518-10121537 | None:intergenic | 35.0% |
| !!! | TTATTGAGGTTTTGAATGGG+AGG | - | chr2_2:10121519-10121538 | None:intergenic | 35.0% |
| ! | ATCGCCTTATTCAAATCCTA+TGG | + | chr2_2:10121697-10121716 | Msa0237050:CDS | 35.0% |
| TTGGGAATTAGAGAAACCAT+AGG | - | chr2_2:10121716-10121735 | None:intergenic | 35.0% | |
| !!! | TTAGGGAGAATGGTTTTGTT+GGG | - | chr2_2:10121784-10121803 | None:intergenic | 35.0% |
| !!! | TTTAGGGAGAATGGTTTTGT+TGG | - | chr2_2:10121785-10121804 | None:intergenic | 35.0% |
| AGACAACATAAGAGGATTTC+TGG | - | chr2_2:10121863-10121882 | None:intergenic | 35.0% | |
| !! | AAGCTTTGAGACAACATAAG+AGG | - | chr2_2:10121871-10121890 | None:intergenic | 35.0% |
| TCTTATGTTGTCTCAAAGCT+TGG | + | chr2_2:10121870-10121889 | Msa0237050:CDS | 35.0% | |
| TCAATTCCTGCTTCAAAATG+GGG | + | chr2_2:10122014-10122033 | Msa0237050:CDS | 35.0% | |
| ! | AGTATTTGAGAAGGCAGTTT+TGG | + | chr2_2:10122101-10122120 | Msa0237050:CDS | 35.0% |
| ! | AGATTAGTCCAAAATCCGTA+TGG | + | chr2_2:10122184-10122203 | Msa0237050:CDS | 35.0% |
| ! | GATTAGTCCAAAATCCGTAT+GGG | + | chr2_2:10122185-10122204 | Msa0237050:CDS | 35.0% |
| !!! | CAGCATTTTTGAAGTATCCA+TGG | + | chr2_2:10122262-10122281 | Msa0237050:CDS | 35.0% |
| !!! | GCAGTTTTTTGTCAATCACA+TGG | + | chr2_2:10122323-10122342 | Msa0237050:CDS | 35.0% |
| ! | TTTTTGTCAATCACATGGGT+TGG | + | chr2_2:10122328-10122347 | Msa0237050:CDS | 35.0% |
| ! | TTTTGTCAATCACATGGGTT+GGG | + | chr2_2:10122329-10122348 | Msa0237050:CDS | 35.0% |
| TGGAAAAAAGGGTTATTCCT+AGG | + | chr2_2:10122397-10122416 | Msa0237050:CDS | 35.0% | |
| GGAAAAAAGGGTTATTCCTA+GGG | + | chr2_2:10122398-10122417 | Msa0237050:CDS | 35.0% | |
| AGCATCCTTAATCAAACCTT+TGG | - | chr2_2:10122448-10122467 | None:intergenic | 35.0% | |
| GAGATATGTGAATTGCTATG+AGG | + | chr2_2:10122512-10122531 | Msa0237050:CDS | 35.0% | |
| !!! | ATTGAGGTTTTGAATGGGAG+GGG | - | chr2_2:10121517-10121536 | None:intergenic | 40.0% |
| GAGAGTTTAGAAGCAGTTTC+TGG | - | chr2_2:10121634-10121653 | None:intergenic | 40.0% | |
| AATAAGGCGATGACTGAATC+AGG | - | chr2_2:10121688-10121707 | None:intergenic | 40.0% | |
| ATCTCTCATCAAAACTCGCA+CGG | + | chr2_2:10121741-10121760 | Msa0237050:CDS | 40.0% | |
| ! | TTGAAGCACCCTTAGAAAGA+AGG | - | chr2_2:10121816-10121835 | None:intergenic | 40.0% |
| ACAAGAGCAATGTTTGAGAG+CGG | - | chr2_2:10121962-10121981 | None:intergenic | 40.0% | |
| GAAACCTGCAGTATTTGAGA+AGG | + | chr2_2:10122092-10122111 | Msa0237050:CDS | 40.0% | |
| ! | TTCCTTTCCCATACGGATTT+TGG | - | chr2_2:10122195-10122214 | None:intergenic | 40.0% |
| ATGCGTATAAGAAATGGGGT+TGG | + | chr2_2:10122220-10122239 | Msa0237050:CDS | 40.0% | |
| ! | GAAGTATCCATGGTGTATGT+TGG | + | chr2_2:10122272-10122291 | Msa0237050:CDS | 40.0% |
| AATTTCAACGCAAAAGCCCT+AGG | - | chr2_2:10122417-10122436 | None:intergenic | 40.0% | |
| ! | AGAGACTTTGAAAGGTGTAG+GGG | - | chr2_2:10122475-10122494 | None:intergenic | 40.0% |
| ! | CAGAGACTTTGAAAGGTGTA+GGG | - | chr2_2:10122476-10122495 | None:intergenic | 40.0% |
| ! | TCAGAGACTTTGAAAGGTGT+AGG | - | chr2_2:10122477-10122496 | None:intergenic | 40.0% |
| TACACCTTTCAAAGTCTCTG+AGG | + | chr2_2:10122476-10122495 | Msa0237050:CDS | 40.0% | |
| AGATCCTCAGAGACTTTGAA+AGG | - | chr2_2:10122483-10122502 | None:intergenic | 40.0% | |
| !!! | ATTGAGGTTTTGAATGGGAG+GGG | - | chr2_2:10121517-10121536 | None:intergenic | 40.0% |
| GAGAGTTTAGAAGCAGTTTC+TGG | - | chr2_2:10121634-10121653 | None:intergenic | 40.0% | |
| AATAAGGCGATGACTGAATC+AGG | - | chr2_2:10121688-10121707 | None:intergenic | 40.0% | |
| ATCTCTCATCAAAACTCGCA+CGG | + | chr2_2:10121741-10121760 | Msa0237050:CDS | 40.0% | |
| ! | TTGAAGCACCCTTAGAAAGA+AGG | - | chr2_2:10121816-10121835 | None:intergenic | 40.0% |
| ACAAGAGCAATGTTTGAGAG+CGG | - | chr2_2:10121962-10121981 | None:intergenic | 40.0% | |
| GAAACCTGCAGTATTTGAGA+AGG | + | chr2_2:10122092-10122111 | Msa0237050:CDS | 40.0% | |
| ! | TTCCTTTCCCATACGGATTT+TGG | - | chr2_2:10122195-10122214 | None:intergenic | 40.0% |
| ATGCGTATAAGAAATGGGGT+TGG | + | chr2_2:10122220-10122239 | Msa0237050:CDS | 40.0% | |
| ! | GAAGTATCCATGGTGTATGT+TGG | + | chr2_2:10122272-10122291 | Msa0237050:CDS | 40.0% |
| AATTTCAACGCAAAAGCCCT+AGG | - | chr2_2:10122417-10122436 | None:intergenic | 40.0% | |
| ! | AGAGACTTTGAAAGGTGTAG+GGG | - | chr2_2:10122475-10122494 | None:intergenic | 40.0% |
| ! | CAGAGACTTTGAAAGGTGTA+GGG | - | chr2_2:10122476-10122495 | None:intergenic | 40.0% |
| ! | TCAGAGACTTTGAAAGGTGT+AGG | - | chr2_2:10122477-10122496 | None:intergenic | 40.0% |
| TACACCTTTCAAAGTCTCTG+AGG | + | chr2_2:10122476-10122495 | Msa0237050:CDS | 40.0% | |
| AGATCCTCAGAGACTTTGAA+AGG | - | chr2_2:10122483-10122502 | None:intergenic | 40.0% | |
| ! | TTTTGAATGGGAGGGGGTTA+GGG | - | chr2_2:10121510-10121529 | None:intergenic | 45.0% |
| !!! | TTGAGGTTTTGAATGGGAGG+GGG | - | chr2_2:10121516-10121535 | None:intergenic | 45.0% |
| ACTGCCTTCTCAAATACTGC+AGG | - | chr2_2:10122099-10122118 | None:intergenic | 45.0% | |
| GTCCAAAATCCGTATGGGAA+AGG | + | chr2_2:10122190-10122209 | Msa0237050:CDS | 45.0% | |
| ACAGATGCCAACATACACCA+TGG | - | chr2_2:10122282-10122301 | None:intergenic | 45.0% | |
| ATGGTGTATGTTGGCATCTG+TGG | + | chr2_2:10122281-10122300 | Msa0237050:CDS | 45.0% | |
| ! | TTTTGAATGGGAGGGGGTTA+GGG | - | chr2_2:10121510-10121529 | None:intergenic | 45.0% |
| !!! | TTGAGGTTTTGAATGGGAGG+GGG | - | chr2_2:10121516-10121535 | None:intergenic | 45.0% |
| ACTGCCTTCTCAAATACTGC+AGG | - | chr2_2:10122099-10122118 | None:intergenic | 45.0% | |
| GTCCAAAATCCGTATGGGAA+AGG | + | chr2_2:10122190-10122209 | Msa0237050:CDS | 45.0% | |
| ACAGATGCCAACATACACCA+TGG | - | chr2_2:10122282-10122301 | None:intergenic | 45.0% | |
| ATGGTGTATGTTGGCATCTG+TGG | + | chr2_2:10122281-10122300 | Msa0237050:CDS | 45.0% | |
| !! | GTTTTGAATGGGAGGGGGTT+AGG | - | chr2_2:10121511-10121530 | None:intergenic | 50.0% |
| !!! | CAGGAACCCCATTTTGAAGC+AGG | - | chr2_2:10122023-10122042 | None:intergenic | 50.0% |
| TCTTAGCATGCAGCGCGATA+AGG | - | chr2_2:10122167-10122186 | None:intergenic | 50.0% | |
| !! | GTTTTGAATGGGAGGGGGTT+AGG | - | chr2_2:10121511-10121530 | None:intergenic | 50.0% |
| !!! | CAGGAACCCCATTTTGAAGC+AGG | - | chr2_2:10122023-10122042 | None:intergenic | 50.0% |
| TCTTAGCATGCAGCGCGATA+AGG | - | chr2_2:10122167-10122186 | None:intergenic | 50.0% | |
| AGGGGGTTAGGGCAGAGTAA+TGG | - | chr2_2:10121499-10121518 | None:intergenic | 55.0% | |
| AGGGGGTTAGGGCAGAGTAA+TGG | - | chr2_2:10121499-10121518 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 10121475 | 10122596 | 10121475 | ID=Msa0237050;Name=Msa0237050 |
| chr2_2 | mRNA | 10121475 | 10122596 | 10121475 | ID=Msa0237050-mRNA-1;Parent=Msa0237050;Name=Msa0237050-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|-1|0|1|-1|1|1|0|373 |
| chr2_2 | exon | 10121475 | 10122596 | 10121475 | ID=Msa0237050-mRNA-1:exon:4354;Parent=Msa0237050-mRNA-1 |
| chr2_2 | CDS | 10121475 | 10122596 | 10121475 | ID=Msa0237050-mRNA-1:cds;Parent=Msa0237050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
