AlfalfaGEDB | Msa0237160

M. sativa cultivar zhongmu-4 / Msa0237160

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0006355 GO:0008150 GO:0008289 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0035091 GO:0043167 GO:0043168 GO:0043207 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF01167.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0237160	XP_003594006.1	88.316	291	2	2	6	264	103	393	0.0	524

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0237160	sp\|Q10LG8\|TLP6_ORYSJ	63.918	291	70	4	6	264	116	403	1.03e-131	381

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0237160	G7ISK0	88.316	291	2	2	6	264	103	393	0.0	524

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TFs/TRs:

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Gene ID	Type	Classification
Msa0237160	TF	TUB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0237160	MtrunA17_Chr2g0286441	88.316	291	2	2	6	264	103	393	0.0	524
Msa0237160	MtrunA17_Chr1g0196071	62.759	290	76	3	6	264	114	402	2.06e-126	365
Msa0237160	MtrunA17_Chr2g0278511	52.903	310	95	7	6	264	118	427	9.63e-102	303
Msa0237160	MtrunA17_Chr1g0201891	52.381	315	94	7	6	264	117	431	2.25e-101	302
Msa0237160	MtrunA17_Chr1g0155301	53.378	296	94	5	6	264	134	422	9.64e-99	295
Msa0237160	MtrunA17_Chr8g0373001	53.020	298	99	5	6	264	117	412	2.41e-98	293
Msa0237160	MtrunA17_Chr5g0404321	52.961	304	92	6	6	264	119	416	4.43e-98	293
Msa0237160	MtrunA17_Chr2g0315641	50.534	281	102	6	6	264	106	371	2.05e-85	259
Msa0237160	MtrunA17_Chr2g0315651	44.364	275	129	7	6	264	101	367	1.14e-65	208
Msa0237160	MtrunA17_Chr8g0373361	38.699	292	131	9	6	257	122	405	2.40e-50	170

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0237160	AT2G47900.2	64.041	292	71	3	6	264	116	406	1.17e-126	366
Msa0237160	AT2G47900.1	64.041	292	71	3	6	264	116	406	1.17e-126	366
Msa0237160	AT2G47900.3	63.823	293	71	3	6	264	116	407	1.53e-126	365
Msa0237160	AT5G18680.2	55.184	299	81	8	6	264	12	297	2.41e-104	305
Msa0237160	AT3G06380.2	56.944	288	88	6	7	264	7	288	2.92e-103	302
Msa0237160	AT5G18680.1	55.184	299	81	8	6	264	104	389	3.68e-103	305
Msa0237160	AT3G06380.1	56.944	288	88	6	7	264	99	380	5.78e-102	302
Msa0237160	AT2G18280.2	53.425	292	93	7	6	264	112	393	4.85e-95	285
Msa0237160	AT2G18280.1	53.425	292	93	7	6	264	112	393	4.85e-95	285
Msa0237160	AT1G47270.3	50.342	292	101	5	6	264	108	388	3.71e-92	277

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Find 74 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAATAATATGTTTGAG+TGG	0.611039	2_2:-10227105	None:intergenic
AAAGTATTTATGAAGATGAT+TGG	0.413949	2_2:+10229587	Msa0237160:three_prime_UTR
AAATATGTTTGAATGTCACT+TGG	0.642156	2_2:+10229545	Msa0237160:three_prime_UTR
AACATAGTTGTTGCTTCCCC+TGG	0.398674	2_2:-10227350	None:intergenic
AAGAATTTATGTACAGCACA+AGG	0.606359	2_2:-10229731	None:intergenic
AAGGAGAATGCACTGTGTCA+TGG	0.546764	2_2:+10228078	Msa0237160:CDS
AATAATATGTTTGAGTGGAC+CGG	0.492380	2_2:-10227100	None:intergenic
AATGCCTGAAACGCCGAAAT+AGG	0.212680	2_2:-10228481	None:intergenic
AATGCTTTATAAAGCGCAAC+CGG	0.499079	2_2:+10227081	Msa0237160:CDS
AATTCAGCGCTAGGTGATGA+CGG	0.546541	2_2:+10227247	Msa0237160:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAACCTATCTAAATTACTCT+TGG	+	chr2_2:10225931-10225950	Msa0237160:intron	30.0%
TTCTCTGTCAGAGAATTATT+TGG	+	chr2_2:10226282-10226301	Msa0237160:intron	30.0%
AGTCAACTCAGTTTAGTTAA+AGG	+	chr2_2:10226452-10226471	Msa0237160:intron	30.0%
AGATGTCTGACATATATGAT+AGG	+	chr2_2:10226513-10226532	Msa0237160:intron	30.0%
TGTGAATGTTGTAATTCCAT+TGG	+	chr2_2:10226573-10226592	Msa0237160:intron	30.0%
TTATGTCTAACTACCTTGTT+TGG	+	chr2_2:10226665-10226684	Msa0237160:intron	30.0%
GATTGAATATGACTATGTTG+TGG	+	chr2_2:10226907-10226926	Msa0237160:intron	30.0%
AATATGACTATGTTGTGGAA+GGG	+	chr2_2:10226912-10226931	Msa0237160:intron	30.0%
AATAATATGTTTGAGTGGAC+CGG	-	chr2_2:10227103-10227122	None:intergenic	30.0%
TTAAAGAAGCAATGACCAAA+AGG	-	chr2_2:10227229-10227248	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	10225880	10229892	10225880	ID=Msa0237160;Name=Msa0237160
chr2_2	mRNA	10225880	10229892	10225880	ID=Msa0237160-mRNA-1;Parent=Msa0237160;Name=Msa0237160-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0\|0.33\|0.42\|0.85\|0.33\|0.42\|7\|393\|264
chr2_2	exon	10225880	10225887	10225880	ID=Msa0237160-mRNA-1:exon:4391;Parent=Msa0237160-mRNA-1
chr2_2	exon	10226981	10226987	10226981	ID=Msa0237160-mRNA-1:exon:4392;Parent=Msa0237160-mRNA-1
chr2_2	exon	10227056	10227140	10227056	ID=Msa0237160-mRNA-1:exon:4393;Parent=Msa0237160-mRNA-1
chr2_2	exon	10227254	10227383	10227254	ID=Msa0237160-mRNA-1:exon:4394;Parent=Msa0237160-mRNA-1
chr2_2	exon	10227484	10227570	10227484	ID=Msa0237160-mRNA-1:exon:4395;Parent=Msa0237160-mRNA-1
chr2_2	exon	10228072	10228565	10228072	ID=Msa0237160-mRNA-1:exon:4396;Parent=Msa0237160-mRNA-1
chr2_2	exon	10229516	10229892	10229516	ID=Msa0237160-mRNA-1:exon:4397;Parent=Msa0237160-mRNA-1
chr2_2	CDS	10225880	10225887	10225880	ID=Msa0237160-mRNA-1:cds;Parent=Msa0237160-mRNA-1
chr2_2	CDS	10226981	10226987	10226981	ID=Msa0237160-mRNA-1:cds;Parent=Msa0237160-mRNA-1
chr2_2	CDS	10227056	10227140	10227056	ID=Msa0237160-mRNA-1:cds;Parent=Msa0237160-mRNA-1
chr2_2	CDS	10227254	10227383	10227254	ID=Msa0237160-mRNA-1:cds;Parent=Msa0237160-mRNA-1
chr2_2	CDS	10227484	10227570	10227484	ID=Msa0237160-mRNA-1:cds;Parent=Msa0237160-mRNA-1
chr2_2	CDS	10228072	10228549	10228072	ID=Msa0237160-mRNA-1:cds;Parent=Msa0237160-mRNA-1
chr2_2	three_prime_UTR	10228550	10228565	10228550	ID=Msa0237160-mRNA-1:three_prime_utr;Parent=Msa0237160-mRNA-1
chr2_2	three_prime_UTR	10229516	10229892	10229516	ID=Msa0237160-mRNA-1:three_prime_utr;Parent=Msa0237160-mRNA-1

Gene Sequence

>Msa0237160

ATGGCAAGTAATTTACCTGGTCCAAGGGAGAATCTCCTTCAATGCTTTATAAAGCGCAACCGGTCCACTCAAACATATTATTTGTTTCTCAGTTTAACTACGCTAGGTGATGACGGGAAGTTCCTTTTGGCTGCACGCAAATGTAGACGTCCTACATGCACAGATTATATCATCTCTCTAGACGCAGATGATATGTCCAGGGGAAGCAACAACTATGTTGGGAAATTGAGATCAAATTTCCTTGGAACAAAGTTCACTATCTATGACGGCCAGCCACCTCATGCAGGAGCAAAATTTACTAAAAGTCGTTCTACTAGGGGGCCAAGGAGAATGCACTGTGTCATGGATTCCATTCCATCCTCTTCAATCGAACCAGGTGGCGTAGCTCCTACACAAACTGAGTTTTCTCTAAACAACATAGAAATGTTTCCCTTGTTTCCTTTTTTCCGATCAAAATCAAATCGTGTGGTAGAGAACTCTCTATCCGGACCTCTTGTTGGCGATAAAAGAGATGGTATGCTTGTGTTGAAAAACAAGGCTCCGAGGTGGCATGAGCAGCTGCAGTGTTGGTGCTTAAATTTTCATGGACGGGTGACAATTGCCTCGGTTAAAAACTTTCAGCTGGTGGCTTCCGCAGAAAATGGAACAGCTGGACCGGAACACGATAAGATTATTCTGCAATTTGGAAAAGTTGGGAAGGATTTGTTTACAATGGATTTCCGATACCCTATTTCGGCGTTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGATACCAAGATTGCTTGTGAATAA

Protein sequence

>Msa0237160

MASNLPGPRENLLQCFIKRNRSTQTYYLFLSLTTLGDDGKFLLAARKCRRPTCTDYIISLDADDMSRGSNNYVGKLRSNFLGTKFTIYDGQPPHAGAKFTKSRSTRGPRRMHCVMDSIPSSSIEPGGVAPTQTEFSLNNIEMFPLFPFFRSKSNRVVENSLSGPLVGDKRDGMLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASAENGTAGPEHDKIILQFGKVGKDLFTMDFRYPISAFQAFAICLSSFDTKIACE*