AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0238590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0238590 MtrunA17_Chr2g0288601 89.362 94 10 0 12 105 29 122 2.64e-58 181
Msa0238590 MtrunA17_Chr7g0243081 82.609 69 12 0 42 110 59 127 6.10e-35 127
Msa0238590 MtrunA17_Chr1g0210911 79.412 68 14 0 45 112 13 80 4.18e-34 125
Msa0238590 MtrunA17_Chr1g0162931 78.788 66 14 0 45 110 9 74 3.31e-33 121
Msa0238590 MtrunA17_Chr2g0320231 66.265 83 28 0 42 124 85 167 4.54e-33 123
Msa0238590 MtrunA17_Chr8g0379121 80.000 65 13 0 46 110 103 167 4.44e-32 121
Msa0238590 MtrunA17_Chr2g0283951 68.493 73 19 1 46 114 81 153 3.27e-27 107
Msa0238590 MtrunA17_Chr3g0095611 55.714 70 31 0 46 115 11 80 3.64e-23 93.2
Msa0238590 MtrunA17_Chr1g0154261 68.966 58 18 0 53 110 125 182 1.03e-21 91.3
Msa0238590 MtrunA17_Chr7g0261911 43.243 111 57 2 28 132 231 341 3.23e-21 91.7
Msa0238590 MtrunA17_Chr6g0479431 57.143 70 30 0 53 122 201 270 6.42e-21 90.1
Msa0238590 MtrunA17_Chr8g0366281 67.241 58 19 0 53 110 172 229 1.10e-20 89.4
Msa0238590 MtrunA17_Chr5g0410741 58.333 72 29 1 48 118 212 283 2.37e-20 89.0
Msa0238590 MtrunA17_Chr1g0190301 64.286 56 20 0 55 110 176 231 5.48e-20 87.8
Msa0238590 MtrunA17_Chr7g0274471 57.971 69 27 1 55 121 219 287 6.50e-20 87.8
Msa0238590 MtrunA17_Chr3g0109981 64.062 64 22 1 48 110 267 330 6.71e-20 87.8
Msa0238590 MtrunA17_Chr6g0461641 64.151 53 19 0 55 107 43 95 4.40e-18 82.4
Msa0238590 MtrunA17_Chr7g0258551 60.656 61 24 0 50 110 208 268 9.00e-18 81.3
Msa0238590 MtrunA17_Chr1g0197171 63.158 57 21 0 55 111 45 101 1.13e-17 80.1
Msa0238590 MtrunA17_Chr5g0409731 62.069 58 22 0 50 107 21 78 1.16e-17 80.1
Msa0238590 MtrunA17_Chr2g0290991 63.158 57 21 0 55 111 40 96 1.58e-17 80.1
Msa0238590 MtrunA17_Chr7g0254981 45.283 106 55 2 46 149 42 146 1.64e-17 79.3
Msa0238590 MtrunA17_Chr2g0321461 62.264 53 20 0 55 107 46 98 2.81e-17 80.1
Msa0238590 MtrunA17_Chr5g0417521 53.333 60 28 0 55 114 16 75 4.43e-17 79.0
Msa0238590 MtrunA17_Chr1g0175091 59.091 66 25 1 56 121 260 323 8.27e-17 79.0
Msa0238590 MtrunA17_Chr1g0175081 58.182 55 23 0 56 110 24 78 1.81e-16 72.4
Msa0238590 MtrunA17_Chr2g0291021 65.455 55 19 0 56 110 51 105 2.08e-16 77.0
Msa0238590 MtrunA17_Chr2g0310011 45.556 90 42 2 55 138 36 124 2.59e-16 77.0
Msa0238590 MtrunA17_Chr8g0356501 41.489 94 49 1 18 111 7 94 4.26e-16 76.3
Msa0238590 MtrunA17_Chr4g0042451 50.000 64 31 1 55 118 18 80 2.07e-15 74.3
Msa0238590 MtrunA17_Chr4g0045361 50.000 68 34 0 40 107 260 327 1.26e-14 72.4
Msa0238590 MtrunA17_Chr1g0175071 58.491 53 22 0 56 108 179 231 6.47e-14 69.7
Msa0238590 MtrunA17_Chr7g0242521 47.191 89 35 3 56 141 15 94 1.51e-13 67.8
Msa0238590 MtrunA17_Chr4g0062921 57.692 52 22 0 56 107 237 288 8.17e-13 67.0
Msa0238590 MtrunA17_Chr2g0304841 54.545 55 24 1 53 107 212 265 1.57e-12 66.6
Msa0238590 MtrunA17_Chr7g0258531 35.556 135 64 4 14 132 171 298 2.38e-12 65.5
Msa0238590 MtrunA17_Chr4g0031961 45.349 86 45 2 22 107 100 183 8.42e-12 63.5
Msa0238590 MtrunA17_Chr7g0275401 54.545 55 24 1 53 107 191 244 2.45e-11 62.4
Msa0238590 MtrunA17_Chr1g0198601 51.923 52 25 0 56 107 213 264 4.96e-11 61.6
Msa0238590 MtrunA17_Chr4g0009901 46.429 56 29 1 52 107 166 220 8.61e-11 60.5
Msa0238590 MtrunA17_Chr7g0255711 38.000 100 53 3 53 144 90 188 9.06e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0238590 AT2G38300.1 56.667 120 48 2 30 145 30 149 1.21e-34 127
Msa0238590 AT4G04605.1 53.636 110 46 2 41 149 1 106 8.99e-34 121
Msa0238590 AT2G02060.2 83.871 62 10 0 46 107 21 82 9.15e-33 120
Msa0238590 AT2G02060.1 83.871 62 10 0 46 107 21 82 9.15e-33 120
Msa0238590 AT2G40260.1 63.529 85 31 0 33 117 61 145 4.92e-31 118
Msa0238590 AT2G42660.1 46.099 141 71 2 46 185 42 178 1.08e-30 114
Msa0238590 AT1G14600.1 79.032 62 13 0 46 107 15 76 1.74e-29 111
Msa0238590 AT4G04555.1 57.534 73 31 0 41 113 1 73 3.77e-25 95.9
Msa0238590 AT4G04580.1 48.864 88 42 1 41 128 1 85 5.00e-24 94.7
Msa0238590 AT4G17695.1 50.526 95 40 1 16 110 133 220 6.45e-23 95.1
Msa0238590 AT5G42630.2 68.966 58 18 0 53 110 104 161 6.15e-22 90.5
Msa0238590 AT5G42630.1 68.966 58 18 0 53 110 104 161 6.98e-22 91.7
Msa0238590 AT1G32240.1 58.333 72 29 1 48 118 206 277 3.95e-20 88.6
Msa0238590 AT1G32240.2 58.333 72 29 1 48 118 206 277 4.28e-20 88.2
Msa0238590 AT5G16560.1 64.062 64 22 1 48 110 212 275 5.87e-20 88.2
Msa0238590 AT4G28610.1 65.455 55 19 0 56 110 227 281 9.96e-19 84.7
Msa0238590 AT5G29000.4 65.455 55 19 0 56 110 233 287 1.19e-18 83.6
Msa0238590 AT5G29000.1 65.455 55 19 0 56 110 190 244 1.21e-18 84.0
Msa0238590 AT5G29000.3 65.455 55 19 0 56 110 190 244 1.21e-18 84.0
Msa0238590 AT5G29000.2 65.455 55 19 0 56 110 233 287 1.47e-18 84.3
Msa0238590 AT3G04450.3 61.818 55 21 0 56 110 240 294 2.14e-18 82.8
Msa0238590 AT3G04450.4 61.818 55 21 0 56 110 200 254 2.29e-18 83.6
Msa0238590 AT3G04450.2 61.818 55 21 0 56 110 200 254 2.29e-18 83.6
Msa0238590 AT3G04450.1 61.818 55 21 0 56 110 240 294 2.64e-18 83.6
Msa0238590 AT5G45580.1 58.730 63 26 0 50 112 3 65 3.43e-18 81.6
Msa0238590 AT5G45580.2 58.730 63 26 0 50 112 19 81 3.88e-18 81.6
Msa0238590 AT3G13040.3 49.383 81 41 0 56 136 243 323 1.27e-17 81.6
Msa0238590 AT3G13040.1 49.383 81 41 0 56 136 243 323 1.27e-17 81.6
Msa0238590 AT3G13040.2 49.383 81 41 0 56 136 243 323 1.27e-17 81.6
Msa0238590 AT2G20400.2 63.636 55 20 0 56 110 233 287 3.06e-17 80.5
Msa0238590 AT2G20400.1 63.636 55 20 0 56 110 233 287 3.07e-17 80.5
Msa0238590 AT3G04030.1 60.377 53 21 0 55 107 46 98 3.82e-17 80.1
Msa0238590 AT5G18240.2 62.264 53 20 0 55 107 46 98 4.25e-17 79.7
Msa0238590 AT5G18240.3 62.264 53 20 0 55 107 46 98 4.25e-17 79.7
Msa0238590 AT3G04030.3 60.377 53 21 0 55 107 46 98 4.29e-17 79.7
Msa0238590 AT5G18240.5 62.264 53 20 0 55 107 46 98 4.91e-17 79.7
Msa0238590 AT5G18240.1 62.264 53 20 0 55 107 46 98 5.00e-17 79.7
Msa0238590 AT5G18240.4 62.264 53 20 0 55 107 46 98 5.00e-17 79.7
Msa0238590 AT3G12730.1 59.649 57 23 0 55 111 24 80 8.16e-17 77.0
Msa0238590 AT2G01060.1 65.455 55 19 0 56 110 17 71 1.14e-16 77.8
Msa0238590 AT2G06020.1 52.542 59 28 0 49 107 81 139 1.82e-16 77.4
Msa0238590 AT5G06800.3 49.398 83 39 2 28 110 169 248 2.94e-16 76.3
Msa0238590 AT5G06800.2 42.727 110 55 3 28 132 169 275 3.28e-16 77.4
Msa0238590 AT4G13640.1 56.140 57 25 0 55 111 38 94 4.36e-16 76.3
Msa0238590 AT3G24120.1 56.140 57 25 0 55 111 42 98 4.54e-16 76.3
Msa0238590 AT4G13640.2 56.140 57 25 0 55 111 38 94 4.73e-16 75.9
Msa0238590 AT3G24120.2 56.140 57 25 0 55 111 42 98 4.88e-16 75.9
Msa0238590 AT1G79430.2 57.895 57 24 0 55 111 35 91 6.15e-16 76.3
Msa0238590 AT5G06800.1 49.398 83 39 2 28 110 169 248 1.39e-15 75.5
Msa0238590 AT1G69580.1 58.491 53 22 0 55 107 35 87 5.64e-15 73.6
Msa0238590 AT1G69580.2 58.491 53 22 0 55 107 35 87 5.74e-15 73.6
Msa0238590 AT3G04030.2 58.491 53 21 1 55 107 46 97 1.56e-14 72.4
Msa0238590 AT3G62670.1 34.906 106 57 3 52 145 209 314 3.56e-13 68.6
Msa0238590 AT2G03500.1 57.692 52 22 0 56 107 235 286 1.18e-12 67.0
Msa0238590 AT5G59570.2 55.357 56 24 1 52 107 139 193 1.86e-12 65.9
Msa0238590 AT5G59570.1 55.357 56 24 1 52 107 139 193 1.86e-12 65.9
Msa0238590 AT5G44190.1 46.269 67 35 1 53 119 146 211 1.94e-12 66.2
Msa0238590 AT1G25550.1 55.769 52 23 0 56 107 211 262 2.64e-12 65.9
Msa0238590 AT5G44190.2 46.269 67 35 1 53 119 146 211 2.70e-12 65.9
Msa0238590 AT4G37180.1 50.847 59 29 0 49 107 205 263 3.25e-12 65.5
Msa0238590 AT4G37180.2 50.847 59 29 0 49 107 212 270 4.35e-12 65.1
Msa0238590 AT3G46640.2 54.545 55 24 1 53 107 143 196 9.23e-12 63.9
Msa0238590 AT3G46640.1 54.545 55 24 1 53 107 143 196 9.23e-12 63.9
Msa0238590 AT3G46640.3 54.545 55 24 1 53 107 143 196 1.43e-11 63.5
Msa0238590 AT2G40970.1 37.500 96 55 2 53 144 104 198 2.13e-11 62.4
Msa0238590 AT1G25550.2 51.923 52 25 0 56 107 211 262 6.13e-11 61.2
Msa0238590 AT1G68670.1 53.846 52 24 0 56 107 217 268 6.68e-11 61.6
Msa0238590 AT4G37180.3 49.123 57 29 0 49 105 205 261 9.52e-11 60.8

Find 58 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATTCCAGGGATGCTTAT+TGG 0.219949 2_2:+12332323 Msa0238590:intron
GAATCTTTGTTGGTCGCTTT+TGG 0.263083 2_2:-12334592 None:intergenic
GTTTGGAGAATTACATTCTT+TGG 0.267769 2_2:-12332161 None:intergenic
CACACTTACATCCTCTTTGA+TGG 0.313928 2_2:+12332415 Msa0238590:CDS
ATCCTCTTTGATGGTATTCT+CGG 0.352821 2_2:+12332424 Msa0238590:CDS
AATCAATGGTGATCTGTAAT+GGG 0.358152 2_2:+12332377 Msa0238590:CDS
GGACCTCCTGAGCTTGTTGA+TGG 0.365393 2_2:-12334666 None:intergenic
CCATGATTCAGATAGTAGTT+TGG 0.373622 2_2:-12332138 None:intergenic
TTATATCTTCGAATCTTTGT+TGG 0.384293 2_2:-12334602 None:intergenic
ATTCACTCTCTCTCCTCTCC+TGG 0.393108 2_2:-12334625 None:intergenic
ATGAATTGTAAAACTAACTT+TGG 0.405423 2_2:-12330366 None:intergenic
CAATCAATGGTGATCTGTAA+TGG 0.411536 2_2:+12332376 Msa0238590:CDS
TCATGTCAAAAGCCACCTTC+AGG 0.411764 2_2:+12330413 Msa0238590:CDS
TTTACAATTCATGAATATCA+AGG 0.423774 2_2:+12330377 Msa0238590:CDS
TATTGGCTAGAGTCTTTCAA+TGG 0.428858 2_2:+12332340 Msa0238590:CDS
CAATGTTATTGCAGATGTAC+AGG 0.430914 2_2:+12330611 Msa0238590:intron
GACCTCCTGAGCTTGTTGAT+GGG 0.440748 2_2:-12334665 None:intergenic
CAAAGTTGCCTCGGCTTCGT+TGG 0.452111 2_2:+12330053 Msa0238590:CDS
GTGCATGCAGTTCAAAGGCT+TGG 0.455826 2_2:+12330100 Msa0238590:CDS
AAACAAGAGCAGATGATTGA+AGG 0.472078 2_2:+12330640 Msa0238590:CDS
ACAAAGCAACGGTGAAGATC+TGG 0.473150 2_2:-12330079 None:intergenic
TTCTCCTACTAGCGGAGTTG+TGG 0.487718 2_2:+12329919 Msa0238590:CDS
AGAGAGACATCATTTGTGTC+TGG 0.491055 2_2:-12334687 None:intergenic
GGCAACTTTGATCGAACATA+AGG 0.496488 2_2:-12330040 None:intergenic
CTGTCCCCATCAACAAGCTC+AGG 0.503401 2_2:+12334660 Msa0238590:CDS
CCAAACTACTATCTGAATCA+TGG 0.514710 2_2:+12332138 Msa0238590:CDS
AACTCAAGGTAATCAATCAA+TGG 0.516233 2_2:+12332363 Msa0238590:CDS
ATGTTCGATCAAAGTTGCCT+CGG 0.517554 2_2:+12330044 Msa0238590:CDS
TTTACCAGCTGCAAAGAGAA+AGG 0.520218 2_2:+12332065 Msa0238590:intron
TTACAATTCATGAATATCAA+GGG 0.527486 2_2:+12330378 Msa0238590:CDS
GCTTTGTGCATGCAGTTCAA+AGG 0.532535 2_2:+12330095 Msa0238590:CDS
ACCTCCTGAGCTTGTTGATG+GGG 0.534570 2_2:-12334664 None:intergenic
CGCACATCAGAAGGTTGTGA+AGG 0.540162 2_2:-12329950 None:intergenic
ATTTACGTACTTGAACAGTC+TGG 0.542233 2_2:-12332450 None:intergenic
CATGCAGTTCAAAGGCTTGG+AGG 0.546546 2_2:+12330103 Msa0238590:CDS
GAGTCTTTCAATGGAACTCA+AGG 0.550479 2_2:+12332349 Msa0238590:CDS
GTTTGGAACAAGGGCTGAGG+AGG 0.556261 2_2:-12332121 None:intergenic
GTGTCCACAACTCCGCTAGT+AGG 0.568408 2_2:-12329923 None:intergenic
TCTTCTTCTTCTCCTACTAG+CGG 0.575646 2_2:+12329911 Msa0238590:CDS
TACAATTCATGAATATCAAG+GGG 0.575681 2_2:+12330379 Msa0238590:CDS
TGAAAAGTTCGCACATCAGA+AGG 0.579697 2_2:-12329959 None:intergenic
CAGATAGTAGTTTGGAACAA+GGG 0.596787 2_2:-12332130 None:intergenic
CTCTTTGATGGTATTCTCGG+AGG 0.601250 2_2:+12332427 Msa0238590:CDS
TCAGATAGTAGTTTGGAACA+AGG 0.613154 2_2:-12332131 None:intergenic
TCCCCATCAACAAGCTCAGG+AGG 0.619846 2_2:+12334663 Msa0238590:CDS
GTAGTTTGGAACAAGGGCTG+AGG 0.623922 2_2:-12332124 None:intergenic
TTCGAAGATATAACCAGGAG+AGG 0.626534 2_2:+12334612 Msa0238590:CDS
GAACTGCATGCACAAAGCAA+CGG 0.628677 2_2:-12330090 None:intergenic
TCTGGTGTCCAACGAAGCCG+AGG 0.632658 2_2:-12330061 None:intergenic
CGAACATAAGGTCTCACCAC+AGG 0.634731 2_2:-12330028 None:intergenic
GCACATCAGAAGGTTGTGAA+GGG 0.634756 2_2:-12329949 None:intergenic
AGCTGCAAAGAGAAAGGACA+TGG 0.645199 2_2:+12332071 Msa0238590:intron
CTCCGAGAATACCATCAAAG+AGG 0.653875 2_2:-12332426 None:intergenic
GATGAGTCTAAAAGCACCTG+TGG 0.662178 2_2:+12330012 Msa0238590:CDS
AAAGATTCGAAGATATAACC+AGG 0.674187 2_2:+12334607 Msa0238590:CDS
AGAGAAAGAGTACCTGAAGG+TGG 0.689810 2_2:-12330425 None:intergenic
ATCAATGGTGATCTGTAATG+GGG 0.718217 2_2:+12332378 Msa0238590:CDS
TCTGATGAGAATCTAAACGA+CGG 0.728967 2_2:-12329982 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGGAAAAAAAAAAAAATT+TGG - chr2_2:12330578-12330597 None:intergenic 10.0%
!!! AAGTAGAATTTTTTATTATA+GGG + chr2_2:12331086-12331105 Msa0238590:intron 10.0%
!! TAAATAAGATTAAAATCTAA+TGG + chr2_2:12331582-12331601 Msa0238590:intron 10.0%
!!! TAAATGTATATTTTTTTAAC+AGG - chr2_2:12331884-12331903 None:intergenic 10.0%
!!! GAAATAAATTTTAATCAATA+AGG - chr2_2:12334449-12334468 None:intergenic 10.0%
!! AATATTGAATAAAAGAACTA+GGG - chr2_2:12330145-12330164 None:intergenic 15.0%
!! TAATATTGAATAAAAGAACT+AGG - chr2_2:12330146-12330165 None:intergenic 15.0%
!!! ATGATTTTTTTAATAGTAGA+TGG - chr2_2:12330266-12330285 None:intergenic 15.0%
!!! TATTAATCAAACATTTTTAG+TGG - chr2_2:12330467-12330486 None:intergenic 15.0%
!! TAAAAAAACGAACATAAATA+AGG - chr2_2:12330530-12330549 None:intergenic 15.0%
!!! CATTGAAATTTCAAAATTTT+AGG - chr2_2:12330596-12330615 None:intergenic 15.0%
!!! GAAGTAGAATTTTTTATTAT+AGG + chr2_2:12331085-12331104 Msa0238590:intron 15.0%
!!! CAAACTTTTATAAAAACTTA+CGG - chr2_2:12331180-12331199 None:intergenic 15.0%
!! GAACAATAAAAAAAAAAGTT+TGG - chr2_2:12332181-12332200 None:intergenic 15.0%
!!! GGGATAATATATATTTTTTT+AGG + chr2_2:12332519-12332538 Msa0238590:intron 15.0%
!! TATTTATATAAACTACTTTG+AGG + chr2_2:12332578-12332597 Msa0238590:intron 15.0%
!! AAATAAAGGACTATTTAAAT+AGG - chr2_2:12332970-12332989 None:intergenic 15.0%
!! ATAAAAAGTTGTTTGAAAAA+TGG - chr2_2:12333702-12333721 None:intergenic 15.0%
!!! GATTAAAAAGTATTTTATGT+TGG + chr2_2:12334095-12334114 Msa0238590:intron 15.0%
!!! TTTATGTTGGATTTTAATTT+TGG + chr2_2:12334108-12334127 Msa0238590:intron 15.0%
!!! TTATGTTGGATTTTAATTTT+GGG + chr2_2:12334109-12334128 Msa0238590:intron 15.0%
!! AGGATAATATTAGTAAAATA+AGG + chr2_2:12334155-12334174 Msa0238590:intron 15.0%
!!! TAAGGGAAAATATATTTTAT+TGG - chr2_2:12334431-12334450 None:intergenic 15.0%
!!! TGACTTGAAAACATTATTTT+TGG + chr2_2:12330302-12330321 Msa0238590:intron 20.0%
!! ATGAATTGTAAAACTAACTT+TGG - chr2_2:12330369-12330388 None:intergenic 20.0%
!! TTTACAATTCATGAATATCA+AGG + chr2_2:12330377-12330396 Msa0238590:CDS 20.0%
!! TTACAATTCATGAATATCAA+GGG + chr2_2:12330378-12330397 Msa0238590:CDS 20.0%
!! GGTATTACTAATATTAATTG+TGG + chr2_2:12330661-12330680 Msa0238590:intron 20.0%
!! AATACATTAGACATATTGTT+TGG + chr2_2:12330771-12330790 Msa0238590:intron 20.0%
!! AATAGAACAAAACAAGAAAT+AGG + chr2_2:12330860-12330879 Msa0238590:intron 20.0%
!!! ACAAAATGATGTATTTTTCT+AGG - chr2_2:12330969-12330988 None:intergenic 20.0%
!! TCTAAATAGTGAAATTTGAT+TGG + chr2_2:12331364-12331383 Msa0238590:intron 20.0%
!!! TTATTGGCTAACATTAATTT+CGG - chr2_2:12331497-12331516 None:intergenic 20.0%
!!! CATTTTCCTATAAATTATGA+TGG + chr2_2:12331663-12331682 Msa0238590:intron 20.0%
!!! CTTTACAATGCATATAATTT+TGG + chr2_2:12332287-12332306 Msa0238590:intron 20.0%
!!! CAAACTTACAAAAATTTTGT+AGG - chr2_2:12332732-12332751 None:intergenic 20.0%
!! CAAAAAAAAAAGCTTACAAA+AGG - chr2_2:12332769-12332788 None:intergenic 20.0%
!!! CTTTTGTAAGCTTTTTTTTT+TGG + chr2_2:12332767-12332786 Msa0238590:intron 20.0%
!! TAAAGTGAAATAGACATTTA+CGG - chr2_2:12332936-12332955 None:intergenic 20.0%
!! TAAATGTCTATTTCACTTTA+AGG + chr2_2:12332936-12332955 Msa0238590:intron 20.0%
!!! ACTTATTTAAGTTAATAGCT+CGG - chr2_2:12333117-12333136 None:intergenic 20.0%
!! GTTATTAAATGATTGAATGT+TGG - chr2_2:12333229-12333248 None:intergenic 20.0%
!!! TTTTGAATTGATTTTGTCTT+CGG + chr2_2:12333287-12333306 Msa0238590:intron 20.0%
!! CTAGTGATAATTAATATGTA+AGG - chr2_2:12333351-12333370 None:intergenic 20.0%
!! ATAAGAGCAAATATGTTAAA+CGG - chr2_2:12334403-12334422 None:intergenic 20.0%
!! TTAACATATTTGCTCTTATT+TGG + chr2_2:12334404-12334423 Msa0238590:intron 20.0%
! TCAAGTCAAATTAACAACAA+AGG - chr2_2:12330290-12330309 None:intergenic 25.0%
! TATATGTATGCTTGTATTAC+AGG + chr2_2:12330336-12330355 Msa0238590:intron 25.0%
! ATATGTATGCTTGTATTACA+GGG + chr2_2:12330337-12330356 Msa0238590:intron 25.0%
! TACAATTCATGAATATCAAG+GGG + chr2_2:12330379-12330398 Msa0238590:CDS 25.0%
! TCTTTGTAAATGGAAGAAAT+AGG + chr2_2:12330739-12330758 Msa0238590:intron 25.0%
!!! ATTTTTCTAGGAACAAAATC+TGG - chr2_2:12330957-12330976 None:intergenic 25.0%
! TTGAGGTCTATAATTTCTTT+GGG - chr2_2:12331048-12331067 None:intergenic 25.0%
! ATTGAGGTCTATAATTTCTT+TGG - chr2_2:12331049-12331068 None:intergenic 25.0%
!!! TACCACGTTTATTTTTATTG+AGG - chr2_2:12331065-12331084 None:intergenic 25.0%
!!! AGTTTTAAAAAAGTGTTCTG+AGG - chr2_2:12331126-12331145 None:intergenic 25.0%
!! TATTGGCTAACATTAATTTC+GGG - chr2_2:12331496-12331515 None:intergenic 25.0%
! AATGTTAGCCAATAAAATCT+CGG + chr2_2:12331502-12331521 Msa0238590:intron 25.0%
! AAAATGCTAGATATCAAGAA+TGG - chr2_2:12331649-12331668 None:intergenic 25.0%
! CATATTCAAAAAACTGTTTC+AGG - chr2_2:12331691-12331710 None:intergenic 25.0%
!! TATGTTCCTCAAACAATTTT+TGG + chr2_2:12331707-12331726 Msa0238590:intron 25.0%
! TAAATGACAACAGATAGATA+GGG - chr2_2:12331748-12331767 None:intergenic 25.0%
!! ATACTTTATCAAGTCTTATC+CGG + chr2_2:12331804-12331823 Msa0238590:intron 25.0%
! TTGAATCACATATCATAATG+TGG - chr2_2:12331932-12331951 None:intergenic 25.0%
! CATTATGATATGTGATTCAA+TGG + chr2_2:12331932-12331951 Msa0238590:intron 25.0%
!!! TTCCTCTCTTCTTTTATTTA+CGG + chr2_2:12332198-12332217 Msa0238590:intron 25.0%
! ATTTCTCTCTTAATTATTCC+AGG + chr2_2:12332311-12332330 Msa0238590:intron 25.0%
! TTTCTCTCTTAATTATTCCA+GGG + chr2_2:12332312-12332331 Msa0238590:intron 25.0%
! CATAGTATTAGTATGTAGAA+AGG - chr2_2:12332497-12332516 None:intergenic 25.0%
! TCTACATACTAATACTATGT+TGG + chr2_2:12332498-12332517 Msa0238590:intron 25.0%
! CTACATACTAATACTATGTT+GGG + chr2_2:12332499-12332518 Msa0238590:intron 25.0%
!! TTACAAAAATTTTGTAGGTC+AGG - chr2_2:12332727-12332746 None:intergenic 25.0%
!! AATCAGACTTTTAAATAGAC+TGG - chr2_2:12332794-12332813 None:intergenic 25.0%
! AAACATGTAAATAGACTTTC+AGG - chr2_2:12332820-12332839 None:intergenic 25.0%
! GACTATTTAAATAGGCTTTA+AGG - chr2_2:12332962-12332981 None:intergenic 25.0%
! TCAAGTAACAACTCAAATAA+AGG - chr2_2:12332984-12333003 None:intergenic 25.0%
!! CTTATTTAAGTTAATAGCTC+GGG - chr2_2:12333116-12333135 None:intergenic 25.0%
!! AATGATTGAATGTTGGTTAA+GGG - chr2_2:12333222-12333241 None:intergenic 25.0%
!! AAATGATTGAATGTTGGTTA+AGG - chr2_2:12333223-12333242 None:intergenic 25.0%
! TGTGTATGAAATATTGAGTA+AGG - chr2_2:12333731-12333750 None:intergenic 25.0%
!!! AAGTTGTTTTTGAAGAATGA+TGG - chr2_2:12333773-12333792 None:intergenic 25.0%
! CAAAAATTCCAAAAAGAACA+TGG + chr2_2:12333853-12333872 Msa0238590:intron 25.0%
! TATTAGTAAAATAAGGAGTG+TGG + chr2_2:12334162-12334181 Msa0238590:intron 25.0%
!!! GATATTATTTTGGTTTGGTT+CGG + chr2_2:12334303-12334322 Msa0238590:intron 25.0%
! AGTAATATTTGATGTCACTA+GGG - chr2_2:12334372-12334391 None:intergenic 25.0%
! TAGTAATATTTGATGTCACT+AGG - chr2_2:12334373-12334392 None:intergenic 25.0%
! TTATATCTTCGAATCTTTGT+TGG - chr2_2:12334605-12334624 None:intergenic 25.0%
TATGTATGCTTGTATTACAG+GGG + chr2_2:12330338-12330357 Msa0238590:intron 30.0%
AAATGCATGTTATCATGTCA+CGG + chr2_2:12330701-12330720 Msa0238590:intron 30.0%
CATGTATGCATCTTTGTAAA+TGG + chr2_2:12330729-12330748 Msa0238590:intron 30.0%
CATATTGTTTGGTACAATAG+AGG + chr2_2:12330782-12330801 Msa0238590:intron 30.0%
GACCTCAATAAAAATAAACG+TGG + chr2_2:12331060-12331079 Msa0238590:intron 30.0%
!! AGTTTGTGTATTTGCTGTAT+TGG + chr2_2:12331194-12331213 Msa0238590:intron 30.0%
!! GTTTGTGTATTTGCTGTATT+GGG + chr2_2:12331195-12331214 Msa0238590:intron 30.0%
TGATGAATTCAAGAATGACA+TGG - chr2_2:12331619-12331638 None:intergenic 30.0%
CAGGAACCATCATAATTTAT+AGG - chr2_2:12331672-12331691 None:intergenic 30.0%
CTAAATGACAACAGATAGAT+AGG - chr2_2:12331749-12331768 None:intergenic 30.0%
!! TTTCTCTTTTTGCTATGTGA+CGG + chr2_2:12331773-12331792 Msa0238590:intron 30.0%
GTTTGGAGAATTACATTCTT+TGG - chr2_2:12332164-12332183 None:intergenic 30.0%
AACTCAAGGTAATCAATCAA+TGG + chr2_2:12332363-12332382 Msa0238590:CDS 30.0%
AATCAATGGTGATCTGTAAT+GGG + chr2_2:12332377-12332396 Msa0238590:CDS 30.0%
TGATAGAAAGAAGTGGAATT+CGG - chr2_2:12332606-12332625 None:intergenic 30.0%
! AAAAAAGTGTGTTTGTGTGT+TGG - chr2_2:12332629-12332648 None:intergenic 30.0%
TTGTTGGTCAACAAAATTGT+AGG - chr2_2:12332674-12332693 None:intergenic 30.0%
! CAATTTTGTTGACCAACAAT+AGG + chr2_2:12332675-12332694 Msa0238590:intron 30.0%
AAATAGACATTTACGGTGAT+AGG - chr2_2:12332929-12332948 None:intergenic 30.0%
! ACCTTGCCTTATTAATAAAC+AGG + chr2_2:12333156-12333175 Msa0238590:intron 30.0%
! TAATTTGTGTTGTGTTAGTG+TGG + chr2_2:12333390-12333409 Msa0238590:intron 30.0%
!! AATGATGGATGAATGAATCT+TGG - chr2_2:12333758-12333777 None:intergenic 30.0%
ATTGATGAATGATGCATGTA+TGG - chr2_2:12333828-12333847 None:intergenic 30.0%
GGAAAACGTGTATAAATCAA+TGG + chr2_2:12333874-12333893 Msa0238590:intron 30.0%
AATGGCATAGAAAATGAACA+TGG + chr2_2:12333892-12333911 Msa0238590:intron 30.0%
AAATAATATCCGACCTTGTT+TGG - chr2_2:12334293-12334312 None:intergenic 30.0%
! AACAAGGTCGGATATTATTT+TGG + chr2_2:12334293-12334312 Msa0238590:intron 30.0%
GTAATATTTGATGTCACTAG+GGG - chr2_2:12334371-12334390 None:intergenic 30.0%
TTGACCTTACATTCATTTGA+TGG + chr2_2:12334491-12334510 Msa0238590:intron 30.0%
TGACCTTACATTCATTTGAT+GGG + chr2_2:12334492-12334511 Msa0238590:intron 30.0%
AAAGATTCGAAGATATAACC+AGG + chr2_2:12334607-12334626 Msa0238590:CDS 30.0%
TCTGATGAGAATCTAAACGA+CGG - chr2_2:12329985-12330004 None:intergenic 35.0%
!! TAAGGTAATTAGCTTGCAAG+AGG - chr2_2:12330512-12330531 None:intergenic 35.0%
CAATGTTATTGCAGATGTAC+AGG + chr2_2:12330611-12330630 Msa0238590:intron 35.0%
AAACAAGAGCAGATGATTGA+AGG + chr2_2:12330640-12330659 Msa0238590:CDS 35.0%
! ACTTTTCTCTATCTTGGTCA+CGG - chr2_2:12330918-12330937 None:intergenic 35.0%
!!! GACGTTACTTTTCTCTATCT+TGG - chr2_2:12330924-12330943 None:intergenic 35.0%
AAGTCGCCAAAAATTGTTTG+AGG - chr2_2:12331716-12331735 None:intergenic 35.0%
ACAACAGATAGATAGGGAAT+AGG - chr2_2:12331742-12331761 None:intergenic 35.0%
AAGCAAATCTTATCAGCACA+AGG - chr2_2:12331834-12331853 None:intergenic 35.0%
! CAGATAGTAGTTTGGAACAA+GGG - chr2_2:12332133-12332152 None:intergenic 35.0%
! TCAGATAGTAGTTTGGAACA+AGG - chr2_2:12332134-12332153 None:intergenic 35.0%
CCATGATTCAGATAGTAGTT+TGG - chr2_2:12332141-12332160 None:intergenic 35.0%
CCAAACTACTATCTGAATCA+TGG + chr2_2:12332138-12332157 Msa0238590:CDS 35.0%
CACCGTAAATAAAAGAAGAG+AGG - chr2_2:12332203-12332222 None:intergenic 35.0%
!! CTCTCTTCTTTTATTTACGG+TGG + chr2_2:12332201-12332220 Msa0238590:intron 35.0%
ATTATTCCAGGGATGCTTAT+TGG + chr2_2:12332323-12332342 Msa0238590:intron 35.0%
! TATTGGCTAGAGTCTTTCAA+TGG + chr2_2:12332340-12332359 Msa0238590:CDS 35.0%
CAATCAATGGTGATCTGTAA+TGG + chr2_2:12332376-12332395 Msa0238590:CDS 35.0%
ATCAATGGTGATCTGTAATG+GGG + chr2_2:12332378-12332397 Msa0238590:CDS 35.0%
! ATCCTCTTTGATGGTATTCT+CGG + chr2_2:12332424-12332443 Msa0238590:CDS 35.0%
ATTTACGTACTTGAACAGTC+TGG - chr2_2:12332453-12332472 None:intergenic 35.0%
! AAAATTTTGTAGGTCAGGCT+CGG - chr2_2:12332722-12332741 None:intergenic 35.0%
CCTTCGTGAAATAGACTTTA+AGG - chr2_2:12332902-12332921 None:intergenic 35.0%
CCTTAAAGTCTATTTCACGA+AGG + chr2_2:12332899-12332918 Msa0238590:intron 35.0%
AAAGCATACGAAGCTTGATA+CGG - chr2_2:12333079-12333098 None:intergenic 35.0%
GCCTGTTTATTAATAAGGCA+AGG - chr2_2:12333160-12333179 None:intergenic 35.0%
GGCTTGCCTGTTTATTAATA+AGG - chr2_2:12333165-12333184 None:intergenic 35.0%
!! TGAATTGATTTTGTCTTCGG+AGG + chr2_2:12333290-12333309 Msa0238590:intron 35.0%
TGTTGAATGTGTGACATCTA+GGG + chr2_2:12333413-12333432 Msa0238590:intron 35.0%
AGAAACCGAACCAAACTAAT+CGG + chr2_2:12333538-12333557 Msa0238590:intron 35.0%
AATGATGCATGTATGGATCA+TGG - chr2_2:12333821-12333840 None:intergenic 35.0%
! CACGTTTTCCATGTTCTTTT+TGG - chr2_2:12333864-12333883 None:intergenic 35.0%
! TGATGATGAGAGAAAGTGAA+TGG + chr2_2:12334073-12334092 Msa0238590:intron 35.0%
ACCTCACACAAACTTATGTT+AGG - chr2_2:12334135-12334154 None:intergenic 35.0%
AACATAAGTTTGTGTGAGGT+AGG + chr2_2:12334135-12334154 Msa0238590:intron 35.0%
! ATAAGGAGTGTGGTTATCAT+CGG + chr2_2:12334172-12334191 Msa0238590:intron 35.0%
!! TTATCATCGGATTGGTTCAT+CGG + chr2_2:12334185-12334204 Msa0238590:intron 35.0%
!! ATCTAGTTTGGTTTGGTTCA+AGG - chr2_2:12334235-12334254 None:intergenic 35.0%
TGAACCAAACCAAACTAGAT+CGG + chr2_2:12334235-12334254 Msa0238590:intron 35.0%
! AAAACCGATCTAGTTTGGTT+TGG - chr2_2:12334242-12334261 None:intergenic 35.0%
CAATCAAAACCGATCTAGTT+TGG - chr2_2:12334247-12334266 None:intergenic 35.0%
!! CAAACTAGATCGGTTTTGAT+TGG + chr2_2:12334245-12334264 Msa0238590:intron 35.0%
!!! TAGATCGGTTTTGATTGGTT+CGG + chr2_2:12334250-12334269 Msa0238590:intron 35.0%
!!! GGTCGGATATTATTTTGGTT+TGG + chr2_2:12334298-12334317 Msa0238590:intron 35.0%
!!! TATTTTGGTTTGGTTCGGTT+TGG + chr2_2:12334308-12334327 Msa0238590:intron 35.0%
GACCTTACATTCATTTGATG+GGG + chr2_2:12334493-12334512 Msa0238590:intron 35.0%
TCTTCTTCTTCTCCTACTAG+CGG + chr2_2:12329911-12329930 Msa0238590:CDS 40.0%
TGAAAAGTTCGCACATCAGA+AGG - chr2_2:12329962-12329981 None:intergenic 40.0%
GGCAACTTTGATCGAACATA+AGG - chr2_2:12330043-12330062 None:intergenic 40.0%
ATGTTCGATCAAAGTTGCCT+CGG + chr2_2:12330044-12330063 Msa0238590:CDS 40.0%
! GTGGCTTTTGACATGAGATA+TGG - chr2_2:12330409-12330428 None:intergenic 40.0%
!! TGAAGAGAAAGAGTACCTGA+AGG - chr2_2:12330431-12330450 None:intergenic 40.0%
TAGGTGTACGTAAGCATAAC+TGG + chr2_2:12330879-12330898 Msa0238590:intron 40.0%
TTTACCAGCTGCAAAGAGAA+AGG + chr2_2:12332065-12332084 Msa0238590:intron 40.0%
GAGTCTTTCAATGGAACTCA+AGG + chr2_2:12332349-12332368 Msa0238590:CDS 40.0%
CACACTTACATCCTCTTTGA+TGG + chr2_2:12332415-12332434 Msa0238590:CDS 40.0%
GAAAGGAGAGACTAATTGAG+AGG - chr2_2:12332480-12332499 None:intergenic 40.0%
!! GTGTTGGTGATAGAAAGAAG+TGG - chr2_2:12332613-12332632 None:intergenic 40.0%
! ATTGAATGTTGGTTAAGGGC+GGG - chr2_2:12333218-12333237 None:intergenic 40.0%
! GATTGAATGTTGGTTAAGGG+CGG - chr2_2:12333219-12333238 None:intergenic 40.0%
GTGTTGAATGTGTGACATCT+AGG + chr2_2:12333412-12333431 Msa0238590:intron 40.0%
GTTGAATGTGTGACATCTAG+GGG + chr2_2:12333414-12333433 Msa0238590:intron 40.0%
CAAACCGATGAAGAGTTCAT+CGG - chr2_2:12333487-12333506 None:intergenic 40.0%
!! AACTCTTCATCGGTTTGGAT+TGG + chr2_2:12333490-12333509 Msa0238590:intron 40.0%
!! TTCATCGGTTTGGATTGGTT+CGG + chr2_2:12333495-12333514 Msa0238590:intron 40.0%
!! CCAAACCGATTAGTTTGGTT+CGG - chr2_2:12333546-12333565 None:intergenic 40.0%
! CTGAACCAAACCGATTAGTT+TGG - chr2_2:12333551-12333570 None:intergenic 40.0%
!! CTAATCGGTTTGGTTCAGTT+TGG + chr2_2:12333553-12333572 Msa0238590:intron 40.0%
!! TGGTTCAGTTTGGATTGGTT+CGG + chr2_2:12333563-12333582 Msa0238590:intron 40.0%
TAAGAGATGAACGATCTCAG+CGG + chr2_2:12333970-12333989 Msa0238590:intron 40.0%
! TGAACAATGAGTTGACAGCT+AGG + chr2_2:12334006-12334025 Msa0238590:intron 40.0%
! GAACAATGAGTTGACAGCTA+GGG + chr2_2:12334007-12334026 Msa0238590:intron 40.0%
GCCTAACATAAGTTTGTGTG+AGG + chr2_2:12334131-12334150 Msa0238590:intron 40.0%
GTTTCAAACCGAACCAAACA+AGG + chr2_2:12334277-12334296 Msa0238590:intron 40.0%
! ATATCCGACCTTGTTTGGTT+CGG - chr2_2:12334288-12334307 None:intergenic 40.0%
!! TTTGGTTCGGTTTGGACTTT+CGG + chr2_2:12334316-12334335 Msa0238590:intron 40.0%
GACCCCATCAAATGAATGTA+AGG - chr2_2:12334498-12334517 None:intergenic 40.0%
!! GAATCTTTGTTGGTCGCTTT+TGG - chr2_2:12334595-12334614 None:intergenic 40.0%
TTCGAAGATATAACCAGGAG+AGG + chr2_2:12334612-12334631 Msa0238590:CDS 40.0%
AGAGAGACATCATTTGTGTC+TGG - chr2_2:12334690-12334709 None:intergenic 40.0%
GCACATCAGAAGGTTGTGAA+GGG - chr2_2:12329952-12329971 None:intergenic 45.0%
! GGTGCTTTTAGACTCATCTC+TGG - chr2_2:12330010-12330029 None:intergenic 45.0%
!! GATGAGTCTAAAAGCACCTG+TGG + chr2_2:12330012-12330031 Msa0238590:CDS 45.0%
ACAAAGCAACGGTGAAGATC+TGG - chr2_2:12330082-12330101 None:intergenic 45.0%
GAACTGCATGCACAAAGCAA+CGG - chr2_2:12330093-12330112 None:intergenic 45.0%
GCTTTGTGCATGCAGTTCAA+AGG + chr2_2:12330095-12330114 Msa0238590:CDS 45.0%
TCATGTCAAAAGCCACCTTC+AGG + chr2_2:12330413-12330432 Msa0238590:CDS 45.0%
!! AGAGAAAGAGTACCTGAAGG+TGG - chr2_2:12330428-12330447 None:intergenic 45.0%
CTTGCAAGAGGTGGAAAGAA+TGG - chr2_2:12330500-12330519 None:intergenic 45.0%
!! GGTAATTAGCTTGCAAGAGG+TGG - chr2_2:12330509-12330528 None:intergenic 45.0%
CTTATCAGCACAAGGTGTAC+CGG - chr2_2:12331826-12331845 None:intergenic 45.0%
ATGTCCTTTCTCTTTGCAGC+TGG - chr2_2:12332072-12332091 None:intergenic 45.0%
AGCTGCAAAGAGAAAGGACA+TGG + chr2_2:12332071-12332090 Msa0238590:intron 45.0%
CTCCGAGAATACCATCAAAG+AGG - chr2_2:12332429-12332448 None:intergenic 45.0%
! CTCTTTGATGGTATTCTCGG+AGG + chr2_2:12332427-12332446 Msa0238590:CDS 45.0%
TACGGGCCTATAAGTGTCTA+CGG - chr2_2:12333186-12333205 None:intergenic 45.0%
! TGTGACATCTAGGGGTGTAA+CGG + chr2_2:12333422-12333441 Msa0238590:intron 45.0%
!! TGTAACGGTTCGGTTTGGAT+TGG + chr2_2:12333437-12333456 Msa0238590:intron 45.0%
! CGATGAAGAGTTCATCGGTT+CGG - chr2_2:12333482-12333501 None:intergenic 45.0%
CGAACCGATGAACTCTTCAT+CGG + chr2_2:12333480-12333499 Msa0238590:intron 45.0%
! CGATGAACTCTTCATCGGTT+TGG + chr2_2:12333485-12333504 Msa0238590:intron 45.0%
CCGAACCAAACTAATCGGTT+TGG + chr2_2:12333543-12333562 Msa0238590:intron 45.0%
!! CGGTTTGGTTCAGTTTGGAT+TGG + chr2_2:12333558-12333577 Msa0238590:intron 45.0%
!! TTTGGATTGGTTCGGTTGCT+CGG + chr2_2:12333571-12333590 Msa0238590:intron 45.0%
AACTCATTGTTCATCGCCAC+CGG - chr2_2:12333999-12334018 None:intergenic 45.0%
GAGTGTGGTTATCATCGGAT+TGG + chr2_2:12334177-12334196 Msa0238590:intron 45.0%
!! GGATTGGTTCATCGGTTTCA+CGG + chr2_2:12334193-12334212 Msa0238590:intron 45.0%
!!! CGGTTTTGATTGGTTCGGAT+CGG + chr2_2:12334255-12334274 Msa0238590:intron 45.0%
CAAACCGAACCAAACAAGGT+CGG + chr2_2:12334281-12334300 Msa0238590:intron 45.0%
! TTCATTCCGTTTTGCTCCTC+AGG + chr2_2:12334566-12334585 Msa0238590:intron 45.0%
! TCATTCCGTTTTGCTCCTCA+GGG + chr2_2:12334567-12334586 Msa0238590:intron 45.0%
!! AGAAATTTAAATTAAAAAAT+AGG - chr2_2:12330180-12330199 None:intergenic 5.0%
!!! AAATAAATTTTAATCAATAA+GGG - chr2_2:12334448-12334467 None:intergenic 5.0%
TTCTCCTACTAGCGGAGTTG+TGG + chr2_2:12329919-12329938 Msa0238590:CDS 50.0%
CGCACATCAGAAGGTTGTGA+AGG - chr2_2:12329953-12329972 None:intergenic 50.0%
CGAACATAAGGTCTCACCAC+AGG - chr2_2:12330031-12330050 None:intergenic 50.0%
GTGCATGCAGTTCAAAGGCT+TGG + chr2_2:12330100-12330119 Msa0238590:CDS 50.0%
CATGCAGTTCAAAGGCTTGG+AGG + chr2_2:12330103-12330122 Msa0238590:CDS 50.0%
CAATAAAATCTCGGCCTGCC+CGG + chr2_2:12331511-12331530 Msa0238590:intron 50.0%
! GTAGTTTGGAACAAGGGCTG+AGG - chr2_2:12332127-12332146 None:intergenic 50.0%
CTCTAGCCAATAAGCATCCC+TGG - chr2_2:12332332-12332351 None:intergenic 50.0%
AGTCGGGTCTGACCTATTGT+TGG - chr2_2:12332690-12332709 None:intergenic 50.0%
AGGTCAGACCCGACTTTGAT+AGG + chr2_2:12332695-12332714 Msa0238590:intron 50.0%
AGGCTCGGACCTATCAAAGT+CGG - chr2_2:12332707-12332726 None:intergenic 50.0%
GGCAAGCCGTAGACACTTAT+AGG + chr2_2:12333177-12333196 Msa0238590:intron 50.0%
AAGGGCGGGAATAGGTCATA+CGG - chr2_2:12333204-12333223 None:intergenic 50.0%
! TGTTGGTTAAGGGCGGGAAT+AGG - chr2_2:12333212-12333231 None:intergenic 50.0%
! CATCTAGGGGTGTAACGGTT+CGG + chr2_2:12333427-12333446 Msa0238590:intron 50.0%
! CACTAGGGGTGTAAGTGGTT+TGG - chr2_2:12334357-12334376 None:intergenic 50.0%
! GATGTCACTAGGGGTGTAAG+TGG - chr2_2:12334362-12334381 None:intergenic 50.0%
! CATTCCGTTTTGCTCCTCAG+GGG + chr2_2:12334568-12334587 Msa0238590:intron 50.0%
ATTCACTCTCTCTCCTCTCC+TGG - chr2_2:12334628-12334647 None:intergenic 50.0%
!! ACCTCCTGAGCTTGTTGATG+GGG - chr2_2:12334667-12334686 None:intergenic 50.0%
!! GACCTCCTGAGCTTGTTGAT+GGG - chr2_2:12334668-12334687 None:intergenic 50.0%
GTGTCCACAACTCCGCTAGT+AGG - chr2_2:12329926-12329945 None:intergenic 55.0%
CAAAGTTGCCTCGGCTTCGT+TGG + chr2_2:12330053-12330072 Msa0238590:CDS 55.0%
! CGGGCAGGCCGAGATTTTAT+TGG - chr2_2:12331513-12331532 None:intergenic 55.0%
ACCCACCACCCCATGATTTC+CGG - chr2_2:12331533-12331552 None:intergenic 55.0%
! GTTTGGAACAAGGGCTGAGG+AGG - chr2_2:12332124-12332143 None:intergenic 55.0%
GGCTCGGACCTATCAAAGTC+GGG - chr2_2:12332706-12332725 None:intergenic 55.0%
AGGGCGGGAATAGGTCATAC+GGG - chr2_2:12333203-12333222 None:intergenic 55.0%
!! AGGGGTGTAACGGTTCGGTT+TGG + chr2_2:12333432-12333451 Msa0238590:intron 55.0%
TGAACGATCTCAGCGGTGAC+CGG + chr2_2:12333977-12333996 Msa0238590:intron 55.0%
TGGTCCCCTGAGGAGCAAAA+CGG - chr2_2:12334575-12334594 None:intergenic 55.0%
CTGTCCCCATCAACAAGCTC+AGG + chr2_2:12334660-12334679 Msa0238590:CDS 55.0%
TCCCCATCAACAAGCTCAGG+AGG + chr2_2:12334663-12334682 Msa0238590:CDS 55.0%
!! GGACCTCCTGAGCTTGTTGA+TGG - chr2_2:12334669-12334688 None:intergenic 55.0%
TCTGGTGTCCAACGAAGCCG+AGG - chr2_2:12330064-12330083 None:intergenic 60.0%
TCGGCCTGCCCGGAAATCAT+GGG + chr2_2:12331521-12331540 Msa0238590:intron 60.0%
CCCACCACCCCATGATTTCC+GGG - chr2_2:12331532-12331551 None:intergenic 60.0%
CCCGGAAATCATGGGGTGGT+GGG + chr2_2:12331529-12331548 Msa0238590:intron 60.0%
!!! TGGTCGCTTTTGGTCCCCTG+AGG - chr2_2:12334585-12334604 None:intergenic 60.0%
CTCGGCCTGCCCGGAAATCA+TGG + chr2_2:12331520-12331539 Msa0238590:intron 65.0%
CGGCCTGCCCGGAAATCATG+GGG + chr2_2:12331522-12331541 Msa0238590:intron 65.0%
CCACCCCATGATTTCCGGGC+AGG - chr2_2:12331528-12331547 None:intergenic 65.0%
CCTGCCCGGAAATCATGGGG+TGG + chr2_2:12331525-12331544 Msa0238590:intron 65.0%
GCCCGGAAATCATGGGGTGG+TGG + chr2_2:12331528-12331547 Msa0238590:intron 65.0%
ACGATCTCAGCGGTGACCGG+TGG + chr2_2:12333980-12333999 Msa0238590:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 12329899 12334735 12329899 ID=Msa0238590;Name=Msa0238590
chr2_2 mRNA 12329899 12334735 12329899 ID=Msa0238590-mRNA-1;Parent=Msa0238590;Name=Msa0238590-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|1|0.83|1|1|1|6|7|238
chr2_2 exon 12329899 12330133 12329899 ID=Msa0238590-mRNA-1:exon:5223;Parent=Msa0238590-mRNA-1
chr2_2 exon 12330358 12330434 12330358 ID=Msa0238590-mRNA-1:exon:5224;Parent=Msa0238590-mRNA-1
chr2_2 exon 12330625 12330661 12330625 ID=Msa0238590-mRNA-1:exon:5225;Parent=Msa0238590-mRNA-1
chr2_2 exon 12332073 12332169 12332073 ID=Msa0238590-mRNA-1:exon:5226;Parent=Msa0238590-mRNA-1
chr2_2 exon 12332333 12332462 12332333 ID=Msa0238590-mRNA-1:exon:5227;Parent=Msa0238590-mRNA-1
chr2_2 exon 12334588 12334735 12334588 ID=Msa0238590-mRNA-1:exon:5228;Parent=Msa0238590-mRNA-1
chr2_2 CDS 12329899 12330133 12329899 ID=Msa0238590-mRNA-1:cds;Parent=Msa0238590-mRNA-1
chr2_2 CDS 12330358 12330434 12330358 ID=Msa0238590-mRNA-1:cds;Parent=Msa0238590-mRNA-1
chr2_2 CDS 12330625 12330661 12330625 ID=Msa0238590-mRNA-1:cds;Parent=Msa0238590-mRNA-1
chr2_2 CDS 12332073 12332169 12332073 ID=Msa0238590-mRNA-1:cds;Parent=Msa0238590-mRNA-1
chr2_2 CDS 12332333 12332462 12332333 ID=Msa0238590-mRNA-1:cds;Parent=Msa0238590-mRNA-1
chr2_2 CDS 12334588 12334728 12334588 ID=Msa0238590-mRNA-1:cds;Parent=Msa0238590-mRNA-1
chr2_2 three_prime_UTR 12334729 12334735 12334729 ID=Msa0238590-mRNA-1:three_prime_utr;Parent=Msa0238590-mRNA-1
Gene Sequence

>Msa0238590

ATGTCTTCATCTTCTTCTTCTTCTCCTACTAGCGGAGTTGTGGACACTAACCCTTCACAACCTTCTGATGTGCGAACTTTTCACCGTCGTTTAGATTCTCATCAGACTCCAGAGATGAGTCTAAAAGCACCTGTGGTGAGACCTTATGTTCGATCAAAGTTGCCTCGGCTTCGTTGGACACCAGATCTTCACCGTTGCTTTGTGCATGCAGTTCAAAGGCTTGGAGGAGAAGAGAGGGCTACACCAAAGTTAGTTTTACAATTCATGAATATCAAGGGGCTTACCATATCTCATGTCAAAAGCCACCTTCAGATGTACAGGAGCATGAAACAAGAGCAGATGATTGAAGCTGCAAAGAGAAAGGACATGGCAGCTGATTTATCAGTTTCAGCAATCTCCTCCTCAGCCCTTGTTCCAAACTACTATCTGAATCATGGCCAAAGAATGGATGCTTATTGGCTAGAGTCTTTCAATGGAACTCAAGGTAATCAATCAATGGTGATCTGTAATGGGGATGAGCAGAAGATGCACACTTACATCCTCTTTGATGGTATTCTCGGAGGCCAGACTGTTCAAGGGACCAAAAGCGACCAACAAAGATTCGAAGATATAACCAGGAGAGGAGAGAGAGTGAATGAAGACACAGTTCTGTCCCCATCAACAAGCTCAGGAGGTCCAGACACAAATGATGTCTCTCTTGAGCTCAAACTCAACTGA
Protein sequence

>Msa0238590

MSSSSSSSPTSGVVDTNPSQPSDVRTFHRRLDSHQTPEMSLKAPVVRPYVRSKLPRLRWTPDLHRCFVHAVQRLGGEERATPKLVLQFMNIKGLTISHVKSHLQMYRSMKQEQMIEAAKRKDMAADLSVSAISSSALVPNYYLNHGQRMDAYWLESFNGTQGNQSMVICNGDEQKMHTYILFDGILGGQTVQGTKSDQQRFEDITRRGERVNEDTVLSPSTSSGGPDTNDVSLELKLN*