AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0239000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0239000 MtrunA17_Chr2g0289221 88.024 334 37 2 1 334 1 331 0.0 612
Msa0239000 MtrunA17_Chr5g0417211 70.794 315 88 3 9 321 1 313 2.29e-158 449
Msa0239000 MtrunA17_Chr5g0417281 68.790 314 93 4 13 325 4 313 1.84e-149 431
Msa0239000 MtrunA17_Chr5g0436761 61.514 317 116 5 9 321 1 315 7.88e-133 386
Msa0239000 MtrunA17_Chr5g0424931 54.179 347 117 8 9 321 8 346 3.51e-117 348
Msa0239000 MtrunA17_Chr1g0178011 54.180 323 132 8 9 321 1 317 4.01e-112 333
Msa0239000 MtrunA17_Chr2g0277461 53.846 312 131 6 17 321 10 315 5.15e-102 307
Msa0239000 MtrunA17_Chr2g0277531 48.553 311 144 9 17 321 17 317 7.08e-93 279
Msa0239000 MtrunA17_Chr5g0424801 50.305 328 134 11 9 321 1 314 2.62e-92 280
Msa0239000 MtrunA17_Chr5g0425261 50.610 328 133 11 9 321 1 314 3.07e-91 277
Msa0239000 MtrunA17_Chr3g0115271 45.251 358 141 9 10 320 9 358 8.77e-90 280
Msa0239000 MtrunA17_Chr5g0424741 45.070 355 147 11 9 321 1 349 1.41e-78 249
Msa0239000 MtrunA17_Chr2g0326761 41.209 364 138 10 17 321 8 354 1.42e-78 253
Msa0239000 MtrunA17_Chr1g0181211 40.214 373 144 10 17 325 24 381 2.07e-76 248
Msa0239000 MtrunA17_Chr1g0199681 40.278 360 146 8 17 321 91 436 6.93e-75 244
Msa0239000 MtrunA17_Chr4g0028971 39.835 364 149 8 17 321 9 361 2.98e-74 242
Msa0239000 MtrunA17_Chr7g0264161 40.575 313 151 8 30 321 2 300 1.06e-66 212
Msa0239000 MtrunA17_Chr5g0425661 51.256 199 91 2 14 210 31 225 6.22e-65 205
Msa0239000 MtrunA17_Chr7g0264171 45.982 224 101 5 17 232 28 239 4.73e-56 192
Msa0239000 MtrunA17_Chr4g0046371 33.333 342 188 10 20 333 38 367 3.35e-50 177
Msa0239000 MtrunA17_Chr2g0282961 34.320 338 186 10 11 325 45 369 1.02e-49 175
Msa0239000 MtrunA17_Chr2g0285461 33.929 336 179 11 17 325 20 339 9.01e-47 169
Msa0239000 MtrunA17_Chr8g0385791 34.161 322 189 9 20 325 59 373 1.19e-46 169
Msa0239000 MtrunA17_Chr2g0276781 35.583 326 178 11 20 325 23 336 1.22e-46 167
Msa0239000 MtrunA17_Chr8g0346711 35.000 320 186 9 20 325 29 340 3.41e-46 166
Msa0239000 MtrunA17_Chr4g0009751 33.951 324 185 10 20 325 19 331 1.57e-45 164
Msa0239000 MtrunA17_Chr5g0433301 34.139 331 179 11 20 325 24 340 3.33e-45 164
Msa0239000 MtrunA17_Chr1g0156321 35.276 326 174 13 20 321 43 355 1.55e-44 162
Msa0239000 MtrunA17_Chr2g0301251 32.530 332 180 9 17 321 20 334 2.09e-44 162
Msa0239000 MtrunA17_Chr7g0239061 33.851 322 188 10 20 325 14 326 2.49e-44 161
Msa0239000 MtrunA17_Chr3g0109391 33.837 331 180 11 20 325 26 342 4.01e-44 161
Msa0239000 MtrunA17_Chr4g0070181 33.033 333 177 10 17 321 20 334 2.11e-43 160
Msa0239000 MtrunA17_Chr8g0376771 32.676 355 181 14 7 325 6 338 4.20e-43 159
Msa0239000 MtrunA17_Chr8g0389081 32.615 325 191 10 17 321 29 345 1.36e-42 157
Msa0239000 MtrunA17_Chr4g0029671 33.030 330 192 9 20 325 54 378 5.93e-42 155
Msa0239000 MtrunA17_Chr2g0326281 32.558 344 188 11 20 325 56 393 1.93e-41 154
Msa0239000 MtrunA17_Chr5g0424791 41.722 151 75 6 71 220 13 151 1.82e-23 94.7
Msa0239000 MtrunA17_Chr8g0356211 27.700 213 138 6 130 330 2 210 3.22e-20 89.7
Msa0239000 MtrunA17_Chr5g0419861 42.735 117 61 2 57 170 10 123 2.47e-19 82.8
Msa0239000 MtrunA17_Chr5g0425651 48.913 92 39 6 240 325 1 90 3.62e-15 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0239000 AT1G77850.2 42.897 359 145 9 9 318 1 348 3.14e-87 274
Msa0239000 AT1G77850.1 42.897 359 145 9 9 318 1 348 3.18e-87 273
Msa0239000 AT4G30080.1 41.989 362 138 10 17 321 16 362 7.54e-78 251
Msa0239000 AT2G28350.2 38.420 367 151 10 17 321 7 360 3.00e-69 228
Msa0239000 AT2G28350.1 38.965 367 149 11 17 321 7 360 4.81e-69 228
Msa0239000 AT2G33860.1 36.280 328 167 11 20 320 54 366 1.91e-49 174
Msa0239000 AT5G37020.2 34.743 331 177 11 20 325 22 338 5.24e-49 175
Msa0239000 AT5G37020.1 34.743 331 177 11 20 325 22 338 1.09e-48 174
Msa0239000 AT2G46530.1 34.862 327 177 13 20 325 21 332 2.44e-48 171
Msa0239000 AT2G46530.3 34.862 327 177 13 20 325 42 353 2.51e-48 172
Msa0239000 AT3G61830.1 34.568 324 182 12 20 325 25 336 1.46e-47 169
Msa0239000 AT1G35520.1 35.398 339 189 13 3 325 10 334 1.07e-46 167
Msa0239000 AT4G23980.2 34.375 320 182 10 20 321 12 321 1.69e-46 167
Msa0239000 AT4G23980.1 34.375 320 182 10 20 321 12 321 1.75e-46 167
Msa0239000 AT5G62000.4 33.230 322 192 9 20 325 61 375 7.99e-46 167
Msa0239000 AT5G62000.2 33.230 322 192 9 20 325 61 375 9.70e-46 166
Msa0239000 AT5G62000.5 33.230 322 192 9 20 325 61 375 9.70e-46 166
Msa0239000 AT5G62000.3 33.230 322 192 9 20 325 61 375 9.70e-46 166
Msa0239000 AT5G62000.1 33.230 322 192 9 20 325 61 375 9.70e-46 166
Msa0239000 AT1G30330.1 34.743 331 177 11 20 325 23 339 2.88e-45 165
Msa0239000 AT1G30330.3 34.743 331 177 11 20 325 25 341 3.33e-45 165
Msa0239000 AT1G30330.2 34.743 331 177 11 20 325 25 341 3.33e-45 165
Msa0239000 AT1G59750.4 33.742 326 184 11 20 325 22 335 3.58e-45 164
Msa0239000 AT1G59750.2 33.742 326 184 11 20 325 22 335 3.92e-45 163
Msa0239000 AT1G59750.1 33.742 326 184 11 20 325 22 335 4.02e-45 163
Msa0239000 AT1G59750.3 33.742 326 184 11 20 325 22 335 4.02e-45 163
Msa0239000 AT1G35540.1 34.024 338 195 12 3 325 10 334 6.88e-45 162
Msa0239000 AT1G34310.1 35.000 340 189 12 3 325 10 334 9.15e-45 161
Msa0239000 AT1G34410.1 33.728 338 196 12 3 325 10 334 8.46e-44 159
Msa0239000 AT1G34390.1 34.513 339 190 14 3 325 10 332 2.50e-43 157
Msa0239000 AT5G60450.1 34.472 322 187 9 20 320 65 383 5.10e-43 158
Msa0239000 AT5G60450.2 34.472 322 187 9 20 320 41 359 5.83e-43 158
Msa0239000 AT1G19850.1 33.815 346 166 14 17 325 51 370 8.61e-43 158
Msa0239000 AT1G19850.2 33.815 346 166 14 17 325 40 359 9.88e-43 158
Msa0239000 AT5G20730.1 32.011 353 191 11 1 321 1 336 9.84e-42 155
Msa0239000 AT5G20730.3 32.011 353 191 11 1 321 1 336 1.02e-41 155
Msa0239000 AT1G35240.1 33.432 338 197 12 3 325 10 334 1.60e-41 152
Msa0239000 AT5G20730.2 32.011 353 190 12 1 321 1 335 1.09e-40 152
Msa0239000 AT1G34170.1 33.233 331 175 13 20 325 25 334 8.41e-40 147
Msa0239000 AT1G19220.1 37.168 226 111 5 17 227 20 229 4.47e-39 147
Msa0239000 AT2G33860.2 38.863 211 110 6 124 320 4 209 2.98e-38 142
Msa0239000 AT3G61830.2 34.944 269 149 10 72 325 28 285 1.49e-35 135
Msa0239000 AT1G34170.2 33.538 325 156 14 20 325 25 308 1.69e-34 132
Msa0239000 AT5G37020.3 36.818 220 112 8 124 325 33 243 2.14e-34 134
Msa0239000 AT1G34170.3 33.538 325 156 14 20 325 25 308 2.95e-34 132
Msa0239000 AT2G46530.2 36.481 233 124 9 106 325 24 245 2.63e-33 129
Msa0239000 AT1G43950.1 37.229 231 119 7 2 223 9 222 4.53e-33 122
Msa0239000 ATMG00940.1 41.121 107 57 3 212 318 44 144 4.61e-15 72.4
Msa0239000 AT4G01500.1 36.782 87 52 1 124 210 38 121 4.31e-11 63.5
Msa0239000 AT3G25730.1 36.000 100 62 2 124 221 185 284 5.04e-11 63.5

Find 96 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGACATGCCGGAAATATT+TGG 0.263053 2_2:+12982084 None:intergenic
TAAACTTTGGAATGAAGTTT+AGG 0.275010 2_2:+12981997 None:intergenic
AGGGATAGGGTTTCAGTGTT+GGG 0.310433 2_2:+12981931 None:intergenic
ATGGTAGAACCAAATATTTC+CGG 0.317119 2_2:-12982093 Msa0239000:CDS
GACACCTGATCACCACTAAT+TGG 0.319561 2_2:-12981543 Msa0239000:CDS
GCGCAGCACCGCCAAATCTT+TGG 0.327738 2_2:+12982039 None:intergenic
CCGACGTTCATGGCAAAGTC+TGG 0.342190 2_2:-12981600 Msa0239000:CDS
AGCATGCGCCATGGACTATT+AGG 0.352156 2_2:+12981157 None:intergenic
CGATTCTTTAGTTACCTTAC+CGG 0.378631 2_2:+12981402 None:intergenic
ACAAACGGTGAGACAGCTTT+TGG 0.380825 2_2:+12980471 None:intergenic
AGGATGCAATGAAGATTAAC+TGG 0.394248 2_2:-12981273 Msa0239000:CDS
CGCCGTTATTAGCATCAGAT+AGG 0.405548 2_2:+12981713 None:intergenic
AATTATTTCAGAAGTTGAAA+TGG 0.413192 2_2:-12980496 Msa0239000:intron
CTGTCTGTTACCGACGTTCA+TGG 0.414559 2_2:-12981610 Msa0239000:CDS
GGTGATGAAATTGTTTCCTC+TGG 0.421466 2_2:-12981748 Msa0239000:CDS
TACTCCAATTAGTGGTGATC+AGG 0.433415 2_2:+12981539 None:intergenic
GGTAACTAAAGAATCGGTTA+TGG 0.436627 2_2:-12981395 Msa0239000:CDS
AACCATCTGTGATGGGAGTT+AGG 0.440030 2_2:+12981815 None:intergenic
GAAACCCTATCCCTTCTTGA+TGG 0.440854 2_2:-12981922 Msa0239000:CDS
TCCGTGTAGAACCAAAGATT+TGG 0.441531 2_2:-12982050 Msa0239000:CDS
TCATCTGGAGGTATGTTTGT+TGG 0.445638 2_2:-12981454 Msa0239000:CDS
GAATATTATCCTACGGTTGA+AGG 0.449178 2_2:-12981331 Msa0239000:CDS
ATTATTTCAGAAGTTGAAAT+GGG 0.450836 2_2:-12980495 Msa0239000:intron
CACGAACTTACTCCAATTAG+TGG 0.453246 2_2:+12981531 None:intergenic
GAGATGGCTGTTTAGTTTCG+AGG 0.456957 2_2:+12981638 None:intergenic
AAGGGATAGGGTTTCAGTGT+TGG 0.458344 2_2:+12981930 None:intergenic
TTGTGGGAAATAGTAAACTT+TGG 0.475256 2_2:+12981984 None:intergenic
ACAAAGACTTCATCAGTATG+AGG 0.479542 2_2:+12981847 None:intergenic
AAGATTTGGCGGTGCTGCGC+CGG 0.479939 2_2:-12982036 Msa0239000:CDS
CGGTAAGGTAACTAAAGAAT+CGG 0.481959 2_2:-12981401 Msa0239000:CDS
GGTTATGGAGGCAGCGGAGT+TGG 0.491035 2_2:-12981380 Msa0239000:CDS
ATCCGCCGGCATACTAAGTT+CGG 0.516479 2_2:-12981430 Msa0239000:CDS
TTTCAATCCTTGCATCGTAT+CGG 0.518424 2_2:-12981890 Msa0239000:CDS
GAAATATTTGGTTCTACCAT+CGG 0.518665 2_2:+12982096 None:intergenic
TAAGTTCGGTACTGCCGGTA+AGG 0.522631 2_2:-12981416 Msa0239000:CDS
TGAAGTTGAATATTATCCTA+CGG 0.530623 2_2:-12981338 Msa0239000:CDS
TCTATGCATATGTAAACAAA+CGG 0.532583 2_2:+12980456 None:intergenic
AGTGGTGATCAGGTGTCTCA+AGG 0.534349 2_2:+12981549 None:intergenic
GGGATAGGGTTTCAGTGTTG+GGG 0.534431 2_2:+12981932 None:intergenic
CAATCCTTGCATCGTATCGG+CGG 0.537272 2_2:-12981887 Msa0239000:CDS
CACTAATTGGAGTAAGTTCG+TGG 0.543836 2_2:-12981530 Msa0239000:CDS
GTATGTTTGTTGGAATCCGC+CGG 0.547383 2_2:-12981444 Msa0239000:CDS
AATATTATCCTACGGTTGAA+GGG 0.548282 2_2:-12981330 Msa0239000:CDS
GGTGACCATCAAGAAGGGAT+AGG 0.550120 2_2:+12981917 None:intergenic
ACCCTATCTGATGCTAATAA+CGG 0.550531 2_2:-12981715 Msa0239000:CDS
ATGATGATTCTTCAAAGAGA+TGG 0.554351 2_2:-12981216 Msa0239000:CDS
CATGTTCTAAGTGACCTTGT+GGG 0.557810 2_2:+12981968 None:intergenic
GCCGTTATTAGCATCAGATA+GGG 0.563103 2_2:+12981714 None:intergenic
TAGTCCATGGCGCATGCTTG+AGG 0.564250 2_2:-12981152 Msa0239000:intron
TCTTCACGAACCTCAGTAGG+AGG 0.567827 2_2:+12981781 None:intergenic
GATACGATGCAAGGATTGAA+AGG 0.568466 2_2:+12981892 None:intergenic
CATACTAAGTTCGGTACTGC+CGG 0.570458 2_2:-12981421 Msa0239000:CDS
GTTCGTGAAGACGAACCTAC+AGG 0.573277 2_2:-12981769 Msa0239000:CDS
CGATGCAAGGATTGAAAGGA+CGG 0.573480 2_2:+12981896 None:intergenic
CGACGTTCATGGCAAAGTCT+GGG 0.573902 2_2:-12981599 Msa0239000:CDS
GTGTAGAACCAAAGATTTGG+CGG 0.575952 2_2:-12982047 Msa0239000:CDS
GTGACCATCAAGAAGGGATA+GGG 0.578071 2_2:+12981918 None:intergenic
ATGAAGATTAACTGGAACTG+TGG 0.579226 2_2:-12981265 Msa0239000:CDS
GCATGTTCTAAGTGACCTTG+TGG 0.582217 2_2:+12981967 None:intergenic
AGAATCGGTTATGGAGGCAG+CGG 0.584343 2_2:-12981386 Msa0239000:CDS
AACTAAAGAATCGGTTATGG+AGG 0.588024 2_2:-12981392 Msa0239000:CDS
CTCCTAACTCCCATCACAGA+TGG 0.588312 2_2:-12981817 Msa0239000:CDS
GTGGTGATCAGGTGTCTCAA+GGG 0.590017 2_2:+12981550 None:intergenic
TGTTCACAAACCTCCTACTG+AGG 0.591520 2_2:-12981791 Msa0239000:CDS
GGTTCTACACGGATGAGTTG+TGG 0.593018 2_2:+12982060 None:intergenic
GACTTCATCAGTATGAGGAT+CGG 0.593232 2_2:+12981852 None:intergenic
GAAACAATTTCATCACCTGT+AGG 0.594064 2_2:+12981754 None:intergenic
CAGTACCGAACTTAGTATGC+CGG 0.595682 2_2:+12981425 None:intergenic
AGGGAGTTCCACGGTAGACA+TGG 0.596664 2_2:+12981569 None:intergenic
TCTCTGCTCCTAATAGTCCA+TGG 0.597818 2_2:-12981165 Msa0239000:CDS
TCACAAAACCCTTCAACCGT+AGG 0.599929 2_2:+12981322 None:intergenic
TGTTTAGTTTCGAGGTCAAG+CGG 0.603245 2_2:+12981646 None:intergenic
GTGAACACAACCATCTGTGA+TGG 0.603649 2_2:+12981807 None:intergenic
GAGTTGTGGTGGAGACATGC+CGG 0.607782 2_2:+12982074 None:intergenic
TCGTCTTCACGAACCTCAGT+AGG 0.611106 2_2:+12981778 None:intergenic
TAGTTTCGAGGTCAAGCGGT+GGG 0.611231 2_2:+12981650 None:intergenic
AAGGACGGTGACCATCAAGA+AGG 0.614106 2_2:+12981911 None:intergenic
GCCAAATCTTTGGTTCTACA+CGG 0.623072 2_2:+12982049 None:intergenic
GGATAGGGTTTCAGTGTTGG+GGG 0.627795 2_2:+12981933 None:intergenic
TATACCTCAAGCATGCGCCA+TGG 0.628935 2_2:+12981148 None:intergenic
AGGACGGTGACCATCAAGAA+GGG 0.630343 2_2:+12981912 None:intergenic
ACTGATGTCGCGCAAGAACG+AGG 0.631429 2_2:+12981676 None:intergenic
GTAACAGACAGTTCTTGAGA+TGG 0.639997 2_2:+12981622 None:intergenic
TGAACACAACCATCTGTGAT+GGG 0.656411 2_2:+12981808 None:intergenic
TCAACCGCCGATACGATGCA+AGG 0.657948 2_2:+12981883 None:intergenic
AAAGTTTACTATTTCCCACA+AGG 0.661322 2_2:-12981982 Msa0239000:CDS
GACGAAAAGAAACTCGTCTG+CGG 0.661354 2_2:-12981508 Msa0239000:CDS
GAGTTTCGCCATGTCTACCG+TGG 0.667413 2_2:-12981577 Msa0239000:CDS
GGTGTCTCAAGGGAGTTCCA+CGG 0.685317 2_2:+12981560 None:intergenic
CCAGACTTTGCCATGAACGT+CGG 0.685939 2_2:+12981600 None:intergenic
GGTGGATGCTAAGGTTGTCG+AGG 0.697939 2_2:-12981293 Msa0239000:CDS
TCTACACGGATGAGTTGTGG+TGG 0.702170 2_2:+12982063 None:intergenic
TTAGTTTCGAGGTCAAGCGG+TGG 0.704813 2_2:+12981649 None:intergenic
TACCGAACTTAGTATGCCGG+CGG 0.705556 2_2:+12981428 None:intergenic
CTATCTGATGCTAATAACGG+CGG 0.712179 2_2:-12981712 Msa0239000:CDS
CATCAGTATGAGGATCGGCG+AGG 0.728455 2_2:+12981857 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCTTTTTCATAAAAATTA+TGG + chr2_2:12981073-12981092 None:intergenic 10.0%
!!! TTTCTTTTTCATAAAAATTA+TGG + chr2_2:12981073-12981092 None:intergenic 10.0%
!! GACATTTATTAGTTATTTAT+AGG - chr2_2:12981763-12981782 Msa0239000:CDS 15.0%
!! GACATTTATTAGTTATTTAT+AGG - chr2_2:12981763-12981782 Msa0239000:CDS 15.0%
!! ATACACACATAATCTAATTA+AGG + chr2_2:12981526-12981545 None:intergenic 20.0%
!! AATTTAAGAATTGAATTGAG+TGG - chr2_2:12981690-12981709 Msa0239000:CDS 20.0%
!! TGAGTTATATATATCATAGA+AGG - chr2_2:12981835-12981854 Msa0239000:CDS 20.0%
!! GAGTTATATATATCATAGAA+GGG - chr2_2:12981836-12981855 Msa0239000:CDS 20.0%
!! TACTAAAAAAACAACGATAT+CGG + chr2_2:12981920-12981939 None:intergenic 20.0%
!! TAAAATCAATGAAGTTAATG+TGG + chr2_2:12982011-12982030 None:intergenic 20.0%
!! AATTATTTCAGAAGTTGAAA+TGG - chr2_2:12982054-12982073 Msa0239000:CDS 20.0%
!! ATTATTTCAGAAGTTGAAAT+GGG - chr2_2:12982055-12982074 Msa0239000:CDS 20.0%
!! ATACACACATAATCTAATTA+AGG + chr2_2:12981526-12981545 None:intergenic 20.0%
!! AATTTAAGAATTGAATTGAG+TGG - chr2_2:12981690-12981709 Msa0239000:CDS 20.0%
!! TGAGTTATATATATCATAGA+AGG - chr2_2:12981835-12981854 Msa0239000:CDS 20.0%
!! GAGTTATATATATCATAGAA+GGG - chr2_2:12981836-12981855 Msa0239000:CDS 20.0%
!! TACTAAAAAAACAACGATAT+CGG + chr2_2:12981920-12981939 None:intergenic 20.0%
!! TAAAATCAATGAAGTTAATG+TGG + chr2_2:12982011-12982030 None:intergenic 20.0%
!! AATTATTTCAGAAGTTGAAA+TGG - chr2_2:12982054-12982073 Msa0239000:CDS 20.0%
!! ATTATTTCAGAAGTTGAAAT+GGG - chr2_2:12982055-12982074 Msa0239000:CDS 20.0%
!! ATGAAGTTTAGGAATTTTGA+CGG + chr2_2:12980545-12980564 None:intergenic 25.0%
!!! TAAACTTTGGAATGAAGTTT+AGG + chr2_2:12980556-12980575 None:intergenic 25.0%
! TGAAGTTGAATATTATCCTA+CGG - chr2_2:12981212-12981231 Msa0239000:CDS 25.0%
! TTGTGAAATTATGAAACCAA+AGG - chr2_2:12981599-12981618 Msa0239000:CDS 25.0%
! ATATCATAGAAGGGATAAAT+TGG - chr2_2:12981845-12981864 Msa0239000:CDS 25.0%
! TGAATGAATGTTATGGAATT+AGG - chr2_2:12981889-12981908 Msa0239000:CDS 25.0%
! GTACTATTGAAGATACTTAA+AGG + chr2_2:12981950-12981969 None:intergenic 25.0%
! GAAACTTTATACACTATTGA+TGG - chr2_2:12982031-12982050 Msa0239000:CDS 25.0%
!! ATGAAGTTTAGGAATTTTGA+CGG + chr2_2:12980545-12980564 None:intergenic 25.0%
!!! TAAACTTTGGAATGAAGTTT+AGG + chr2_2:12980556-12980575 None:intergenic 25.0%
! TGAAGTTGAATATTATCCTA+CGG - chr2_2:12981212-12981231 Msa0239000:CDS 25.0%
! TTGTGAAATTATGAAACCAA+AGG - chr2_2:12981599-12981618 Msa0239000:CDS 25.0%
! ATATCATAGAAGGGATAAAT+TGG - chr2_2:12981845-12981864 Msa0239000:CDS 25.0%
! TGAATGAATGTTATGGAATT+AGG - chr2_2:12981889-12981908 Msa0239000:CDS 25.0%
! GTACTATTGAAGATACTTAA+AGG + chr2_2:12981950-12981969 None:intergenic 25.0%
! GAAACTTTATACACTATTGA+TGG - chr2_2:12982031-12982050 Msa0239000:CDS 25.0%
ATGGTAGAACCAAATATTTC+CGG - chr2_2:12980457-12980476 Msa0239000:CDS 30.0%
TTGTGGGAAATAGTAAACTT+TGG + chr2_2:12980569-12980588 None:intergenic 30.0%
AAAGTTTACTATTTCCCACA+AGG - chr2_2:12980568-12980587 Msa0239000:intron 30.0%
ATGAAAAAGAAAGACTCATC+TGG - chr2_2:12981081-12981100 Msa0239000:intron 30.0%
AATATTATCCTACGGTTGAA+GGG - chr2_2:12981220-12981239 Msa0239000:CDS 30.0%
ATGATGATTCTTCAAAGAGA+TGG - chr2_2:12981334-12981353 Msa0239000:CDS 30.0%
! AAAGAGATGGTCAGTTTTTA+AGG - chr2_2:12981347-12981366 Msa0239000:CDS 30.0%
! AAGAGATGGTCAGTTTTTAA+GGG - chr2_2:12981348-12981367 Msa0239000:CDS 30.0%
TATAAACTGAAACTTGCCTT+TGG + chr2_2:12981618-12981637 None:intergenic 30.0%
AGGCAAGTTTCAGTTTATAT+TGG - chr2_2:12981619-12981638 Msa0239000:CDS 30.0%
AAGATTATAAGCATCTTCGT+TGG + chr2_2:12981740-12981759 None:intergenic 30.0%
CGAAGATGCTTATAATCTTA+TGG - chr2_2:12981741-12981760 Msa0239000:CDS 30.0%
GAGATGTTGAATGAATGTTA+TGG - chr2_2:12981882-12981901 Msa0239000:CDS 30.0%
CTATTGAAGATACTTAAAGG+AGG + chr2_2:12981947-12981966 None:intergenic 30.0%
TGTGGTATGACTCATAAAAA+AGG + chr2_2:12981993-12982012 None:intergenic 30.0%
ATGGTAGAACCAAATATTTC+CGG - chr2_2:12980457-12980476 Msa0239000:CDS 30.0%
TTGTGGGAAATAGTAAACTT+TGG + chr2_2:12980569-12980588 None:intergenic 30.0%
AAAGTTTACTATTTCCCACA+AGG - chr2_2:12980568-12980587 Msa0239000:intron 30.0%
ATGAAAAAGAAAGACTCATC+TGG - chr2_2:12981081-12981100 Msa0239000:intron 30.0%
AATATTATCCTACGGTTGAA+GGG - chr2_2:12981220-12981239 Msa0239000:CDS 30.0%
ATGATGATTCTTCAAAGAGA+TGG - chr2_2:12981334-12981353 Msa0239000:CDS 30.0%
! AAAGAGATGGTCAGTTTTTA+AGG - chr2_2:12981347-12981366 Msa0239000:CDS 30.0%
! AAGAGATGGTCAGTTTTTAA+GGG - chr2_2:12981348-12981367 Msa0239000:CDS 30.0%
TATAAACTGAAACTTGCCTT+TGG + chr2_2:12981618-12981637 None:intergenic 30.0%
AGGCAAGTTTCAGTTTATAT+TGG - chr2_2:12981619-12981638 Msa0239000:CDS 30.0%
AAGATTATAAGCATCTTCGT+TGG + chr2_2:12981740-12981759 None:intergenic 30.0%
CGAAGATGCTTATAATCTTA+TGG - chr2_2:12981741-12981760 Msa0239000:CDS 30.0%
GAGATGTTGAATGAATGTTA+TGG - chr2_2:12981882-12981901 Msa0239000:CDS 30.0%
CTATTGAAGATACTTAAAGG+AGG + chr2_2:12981947-12981966 None:intergenic 30.0%
TGTGGTATGACTCATAAAAA+AGG + chr2_2:12981993-12982012 None:intergenic 30.0%
TTTCAATCCTTGCATCGTAT+CGG - chr2_2:12980660-12980679 Msa0239000:intron 35.0%
ACAAAGACTTCATCAGTATG+AGG + chr2_2:12980706-12980725 None:intergenic 35.0%
GAAACAATTTCATCACCTGT+AGG + chr2_2:12980799-12980818 None:intergenic 35.0%
ACCCTATCTGATGCTAATAA+CGG - chr2_2:12980835-12980854 Msa0239000:intron 35.0%
AAAAAGAAAGACTCATCTGG+AGG - chr2_2:12981084-12981103 Msa0239000:intron 35.0%
CGATTCTTTAGTTACCTTAC+CGG + chr2_2:12981151-12981170 None:intergenic 35.0%
CGGTAAGGTAACTAAAGAAT+CGG - chr2_2:12981149-12981168 Msa0239000:intron 35.0%
GGTAACTAAAGAATCGGTTA+TGG - chr2_2:12981155-12981174 Msa0239000:CDS 35.0%
AACTAAAGAATCGGTTATGG+AGG - chr2_2:12981158-12981177 Msa0239000:CDS 35.0%
GAATATTATCCTACGGTTGA+AGG - chr2_2:12981219-12981238 Msa0239000:CDS 35.0%
!! TGAAGGGTTTTGTGATTTTG+TGG - chr2_2:12981236-12981255 Msa0239000:CDS 35.0%
AGGATGCAATGAAGATTAAC+TGG - chr2_2:12981277-12981296 Msa0239000:CDS 35.0%
ATGAAGATTAACTGGAACTG+TGG - chr2_2:12981285-12981304 Msa0239000:CDS 35.0%
GTAGTAACTTTGCAACCTAT+AGG - chr2_2:12981556-12981575 Msa0239000:CDS 35.0%
CACATTGTAACTTAGCCTAT+AGG + chr2_2:12981574-12981593 None:intergenic 35.0%
! AATTGAGTGGCAAGTGATTT+TGG - chr2_2:12981703-12981722 Msa0239000:CDS 35.0%
! ATTGAGTGGCAAGTGATTTT+GGG - chr2_2:12981704-12981723 Msa0239000:CDS 35.0%
! GGAAAGCAGCTCTAATTTAA+TGG + chr2_2:12981972-12981991 None:intergenic 35.0%
TTTCAATCCTTGCATCGTAT+CGG - chr2_2:12980660-12980679 Msa0239000:intron 35.0%
ACAAAGACTTCATCAGTATG+AGG + chr2_2:12980706-12980725 None:intergenic 35.0%
GAAACAATTTCATCACCTGT+AGG + chr2_2:12980799-12980818 None:intergenic 35.0%
ACCCTATCTGATGCTAATAA+CGG - chr2_2:12980835-12980854 Msa0239000:intron 35.0%
AAAAAGAAAGACTCATCTGG+AGG - chr2_2:12981084-12981103 Msa0239000:intron 35.0%
CGATTCTTTAGTTACCTTAC+CGG + chr2_2:12981151-12981170 None:intergenic 35.0%
CGGTAAGGTAACTAAAGAAT+CGG - chr2_2:12981149-12981168 Msa0239000:intron 35.0%
GGTAACTAAAGAATCGGTTA+TGG - chr2_2:12981155-12981174 Msa0239000:CDS 35.0%
AACTAAAGAATCGGTTATGG+AGG - chr2_2:12981158-12981177 Msa0239000:CDS 35.0%
GAATATTATCCTACGGTTGA+AGG - chr2_2:12981219-12981238 Msa0239000:CDS 35.0%
!! TGAAGGGTTTTGTGATTTTG+TGG - chr2_2:12981236-12981255 Msa0239000:CDS 35.0%
AGGATGCAATGAAGATTAAC+TGG - chr2_2:12981277-12981296 Msa0239000:CDS 35.0%
ATGAAGATTAACTGGAACTG+TGG - chr2_2:12981285-12981304 Msa0239000:CDS 35.0%
GTAGTAACTTTGCAACCTAT+AGG - chr2_2:12981556-12981575 Msa0239000:CDS 35.0%
CACATTGTAACTTAGCCTAT+AGG + chr2_2:12981574-12981593 None:intergenic 35.0%
! AATTGAGTGGCAAGTGATTT+TGG - chr2_2:12981703-12981722 Msa0239000:CDS 35.0%
! ATTGAGTGGCAAGTGATTTT+GGG - chr2_2:12981704-12981723 Msa0239000:CDS 35.0%
! GGAAAGCAGCTCTAATTTAA+TGG + chr2_2:12981972-12981991 None:intergenic 35.0%
TCCGTGTAGAACCAAAGATT+TGG - chr2_2:12980500-12980519 Msa0239000:intron 40.0%
!! GCCAAATCTTTGGTTCTACA+CGG + chr2_2:12980504-12980523 None:intergenic 40.0%
GTGTAGAACCAAAGATTTGG+CGG - chr2_2:12980503-12980522 Msa0239000:intron 40.0%
! CATGTTCTAAGTGACCTTGT+GGG + chr2_2:12980585-12980604 None:intergenic 40.0%
! TTTCAGTGTTGGGGGAATTA+GGG + chr2_2:12980612-12980631 None:intergenic 40.0%
GATACGATGCAAGGATTGAA+AGG + chr2_2:12980661-12980680 None:intergenic 40.0%
GACTTCATCAGTATGAGGAT+CGG + chr2_2:12980701-12980720 None:intergenic 40.0%
TGAACACAACCATCTGTGAT+GGG + chr2_2:12980745-12980764 None:intergenic 40.0%
GGTGATGAAATTGTTTCCTC+TGG - chr2_2:12980802-12980821 Msa0239000:intron 40.0%
! TAGGGTTAGAGTTTTTCCAG+AGG + chr2_2:12980821-12980840 None:intergenic 40.0%
GCCGTTATTAGCATCAGATA+GGG + chr2_2:12980839-12980858 None:intergenic 40.0%
CTATCTGATGCTAATAACGG+CGG - chr2_2:12980838-12980857 Msa0239000:intron 40.0%
! TGTTTAGTTTCGAGGTCAAG+CGG + chr2_2:12980907-12980926 None:intergenic 40.0%
GTAACAGACAGTTCTTGAGA+TGG + chr2_2:12980931-12980950 None:intergenic 40.0%
TACTCCAATTAGTGGTGATC+AGG + chr2_2:12981014-12981033 None:intergenic 40.0%
CACGAACTTACTCCAATTAG+TGG + chr2_2:12981022-12981041 None:intergenic 40.0%
CACTAATTGGAGTAAGTTCG+TGG - chr2_2:12981020-12981039 Msa0239000:intron 40.0%
! TCATCTGGAGGTATGTTTGT+TGG - chr2_2:12981096-12981115 Msa0239000:intron 40.0%
!! AGGGTTTTGTGATTTTGTGG+TGG - chr2_2:12981239-12981258 Msa0239000:CDS 40.0%
!!! TGATTTTGTGGTGGATGCTA+AGG - chr2_2:12981248-12981267 Msa0239000:CDS 40.0%
! TTGAGTGGCAAGTGATTTTG+GGG - chr2_2:12981705-12981724 Msa0239000:CDS 40.0%
TCCGTGTAGAACCAAAGATT+TGG - chr2_2:12980500-12980519 Msa0239000:intron 40.0%
!! GCCAAATCTTTGGTTCTACA+CGG + chr2_2:12980504-12980523 None:intergenic 40.0%
GTGTAGAACCAAAGATTTGG+CGG - chr2_2:12980503-12980522 Msa0239000:intron 40.0%
! CATGTTCTAAGTGACCTTGT+GGG + chr2_2:12980585-12980604 None:intergenic 40.0%
! TTTCAGTGTTGGGGGAATTA+GGG + chr2_2:12980612-12980631 None:intergenic 40.0%
GATACGATGCAAGGATTGAA+AGG + chr2_2:12980661-12980680 None:intergenic 40.0%
GACTTCATCAGTATGAGGAT+CGG + chr2_2:12980701-12980720 None:intergenic 40.0%
TGAACACAACCATCTGTGAT+GGG + chr2_2:12980745-12980764 None:intergenic 40.0%
GGTGATGAAATTGTTTCCTC+TGG - chr2_2:12980802-12980821 Msa0239000:intron 40.0%
! TAGGGTTAGAGTTTTTCCAG+AGG + chr2_2:12980821-12980840 None:intergenic 40.0%
GCCGTTATTAGCATCAGATA+GGG + chr2_2:12980839-12980858 None:intergenic 40.0%
CTATCTGATGCTAATAACGG+CGG - chr2_2:12980838-12980857 Msa0239000:intron 40.0%
! TGTTTAGTTTCGAGGTCAAG+CGG + chr2_2:12980907-12980926 None:intergenic 40.0%
GTAACAGACAGTTCTTGAGA+TGG + chr2_2:12980931-12980950 None:intergenic 40.0%
TACTCCAATTAGTGGTGATC+AGG + chr2_2:12981014-12981033 None:intergenic 40.0%
CACGAACTTACTCCAATTAG+TGG + chr2_2:12981022-12981041 None:intergenic 40.0%
CACTAATTGGAGTAAGTTCG+TGG - chr2_2:12981020-12981039 Msa0239000:intron 40.0%
! TCATCTGGAGGTATGTTTGT+TGG - chr2_2:12981096-12981115 Msa0239000:intron 40.0%
!! AGGGTTTTGTGATTTTGTGG+TGG - chr2_2:12981239-12981258 Msa0239000:CDS 40.0%
!!! TGATTTTGTGGTGGATGCTA+AGG - chr2_2:12981248-12981267 Msa0239000:CDS 40.0%
! TTGAGTGGCAAGTGATTTTG+GGG - chr2_2:12981705-12981724 Msa0239000:CDS 40.0%
GGAGACATGCCGGAAATATT+TGG + chr2_2:12980469-12980488 None:intergenic 45.0%
!! AGGAATTTTGACGGAGTGTC+CGG + chr2_2:12980536-12980555 None:intergenic 45.0%
! GCATGTTCTAAGTGACCTTG+TGG + chr2_2:12980586-12980605 None:intergenic 45.0%
! GTTTCAGTGTTGGGGGAATT+AGG + chr2_2:12980613-12980632 None:intergenic 45.0%
AGGGATAGGGTTTCAGTGTT+GGG + chr2_2:12980622-12980641 None:intergenic 45.0%
AAGGGATAGGGTTTCAGTGT+TGG + chr2_2:12980623-12980642 None:intergenic 45.0%
GAAACCCTATCCCTTCTTGA+TGG - chr2_2:12980628-12980647 Msa0239000:intron 45.0%
GTGACCATCAAGAAGGGATA+GGG + chr2_2:12980635-12980654 None:intergenic 45.0%
CGATGCAAGGATTGAAAGGA+CGG + chr2_2:12980657-12980676 None:intergenic 45.0%
! AACCATCTGTGATGGGAGTT+AGG + chr2_2:12980738-12980757 None:intergenic 45.0%
GTGAACACAACCATCTGTGA+TGG + chr2_2:12980746-12980765 None:intergenic 45.0%
TGTTCACAAACCTCCTACTG+AGG - chr2_2:12980759-12980778 Msa0239000:intron 45.0%
CGCCGTTATTAGCATCAGAT+AGG + chr2_2:12980840-12980859 None:intergenic 45.0%
! GAGATGGCTGTTTAGTTTCG+AGG + chr2_2:12980915-12980934 None:intergenic 45.0%
GACACCTGATCACCACTAAT+TGG - chr2_2:12981007-12981026 Msa0239000:intron 45.0%
GACGAAAAGAAACTCGTCTG+CGG - chr2_2:12981042-12981061 Msa0239000:intron 45.0%
! GTATGTTTGTTGGAATCCGC+CGG - chr2_2:12981106-12981125 Msa0239000:intron 45.0%
! CAGTACCGAACTTAGTATGC+CGG + chr2_2:12981128-12981147 None:intergenic 45.0%
CATACTAAGTTCGGTACTGC+CGG - chr2_2:12981129-12981148 Msa0239000:intron 45.0%
TCACAAAACCCTTCAACCGT+AGG + chr2_2:12981231-12981250 None:intergenic 45.0%
TCTCTGCTCCTAATAGTCCA+TGG - chr2_2:12981385-12981404 Msa0239000:CDS 45.0%
! ACAAACGGTGAGACAGCTTT+TGG + chr2_2:12982082-12982101 None:intergenic 45.0%
GGAGACATGCCGGAAATATT+TGG + chr2_2:12980469-12980488 None:intergenic 45.0%
!! AGGAATTTTGACGGAGTGTC+CGG + chr2_2:12980536-12980555 None:intergenic 45.0%
! GCATGTTCTAAGTGACCTTG+TGG + chr2_2:12980586-12980605 None:intergenic 45.0%
! GTTTCAGTGTTGGGGGAATT+AGG + chr2_2:12980613-12980632 None:intergenic 45.0%
AGGGATAGGGTTTCAGTGTT+GGG + chr2_2:12980622-12980641 None:intergenic 45.0%
AAGGGATAGGGTTTCAGTGT+TGG + chr2_2:12980623-12980642 None:intergenic 45.0%
GAAACCCTATCCCTTCTTGA+TGG - chr2_2:12980628-12980647 Msa0239000:intron 45.0%
GTGACCATCAAGAAGGGATA+GGG + chr2_2:12980635-12980654 None:intergenic 45.0%
CGATGCAAGGATTGAAAGGA+CGG + chr2_2:12980657-12980676 None:intergenic 45.0%
! AACCATCTGTGATGGGAGTT+AGG + chr2_2:12980738-12980757 None:intergenic 45.0%
GTGAACACAACCATCTGTGA+TGG + chr2_2:12980746-12980765 None:intergenic 45.0%
TGTTCACAAACCTCCTACTG+AGG - chr2_2:12980759-12980778 Msa0239000:intron 45.0%
CGCCGTTATTAGCATCAGAT+AGG + chr2_2:12980840-12980859 None:intergenic 45.0%
! GAGATGGCTGTTTAGTTTCG+AGG + chr2_2:12980915-12980934 None:intergenic 45.0%
GACACCTGATCACCACTAAT+TGG - chr2_2:12981007-12981026 Msa0239000:intron 45.0%
GACGAAAAGAAACTCGTCTG+CGG - chr2_2:12981042-12981061 Msa0239000:intron 45.0%
! GTATGTTTGTTGGAATCCGC+CGG - chr2_2:12981106-12981125 Msa0239000:intron 45.0%
! CAGTACCGAACTTAGTATGC+CGG + chr2_2:12981128-12981147 None:intergenic 45.0%
CATACTAAGTTCGGTACTGC+CGG - chr2_2:12981129-12981148 Msa0239000:intron 45.0%
TCACAAAACCCTTCAACCGT+AGG + chr2_2:12981231-12981250 None:intergenic 45.0%
TCTCTGCTCCTAATAGTCCA+TGG - chr2_2:12981385-12981404 Msa0239000:CDS 45.0%
! ACAAACGGTGAGACAGCTTT+TGG + chr2_2:12982082-12982101 None:intergenic 45.0%
TCTACACGGATGAGTTGTGG+TGG + chr2_2:12980490-12980509 None:intergenic 50.0%
GGTTCTACACGGATGAGTTG+TGG + chr2_2:12980493-12980512 None:intergenic 50.0%
! GGATAGGGTTTCAGTGTTGG+GGG + chr2_2:12980620-12980639 None:intergenic 50.0%
GGGATAGGGTTTCAGTGTTG+GGG + chr2_2:12980621-12980640 None:intergenic 50.0%
GGTGACCATCAAGAAGGGAT+AGG + chr2_2:12980636-12980655 None:intergenic 50.0%
AGGACGGTGACCATCAAGAA+GGG + chr2_2:12980641-12980660 None:intergenic 50.0%
AAGGACGGTGACCATCAAGA+AGG + chr2_2:12980642-12980661 None:intergenic 50.0%
CAATCCTTGCATCGTATCGG+CGG - chr2_2:12980663-12980682 Msa0239000:intron 50.0%
CTCCTAACTCCCATCACAGA+TGG - chr2_2:12980733-12980752 Msa0239000:intron 50.0%
TCTTCACGAACCTCAGTAGG+AGG + chr2_2:12980772-12980791 None:intergenic 50.0%
TCGTCTTCACGAACCTCAGT+AGG + chr2_2:12980775-12980794 None:intergenic 50.0%
GTTCGTGAAGACGAACCTAC+AGG - chr2_2:12980781-12980800 Msa0239000:intron 50.0%
TAGTTTCGAGGTCAAGCGGT+GGG + chr2_2:12980903-12980922 None:intergenic 50.0%
TTAGTTTCGAGGTCAAGCGG+TGG + chr2_2:12980904-12980923 None:intergenic 50.0%
CTGTCTGTTACCGACGTTCA+TGG - chr2_2:12980940-12980959 Msa0239000:intron 50.0%
CCAGACTTTGCCATGAACGT+CGG + chr2_2:12980953-12980972 None:intergenic 50.0%
CGACGTTCATGGCAAAGTCT+GGG - chr2_2:12980951-12980970 Msa0239000:intron 50.0%
GTGGTGATCAGGTGTCTCAA+GGG + chr2_2:12981003-12981022 None:intergenic 50.0%
AGTGGTGATCAGGTGTCTCA+AGG + chr2_2:12981004-12981023 None:intergenic 50.0%
ATCCGCCGGCATACTAAGTT+CGG - chr2_2:12981120-12981139 Msa0239000:intron 50.0%
TACCGAACTTAGTATGCCGG+CGG + chr2_2:12981125-12981144 None:intergenic 50.0%
TAAGTTCGGTACTGCCGGTA+AGG - chr2_2:12981134-12981153 Msa0239000:intron 50.0%
AGAATCGGTTATGGAGGCAG+CGG - chr2_2:12981164-12981183 Msa0239000:CDS 50.0%
! AGCATGCGCCATGGACTATT+AGG + chr2_2:12981396-12981415 None:intergenic 50.0%
TATACCTCAAGCATGCGCCA+TGG + chr2_2:12981405-12981424 None:intergenic 50.0%
TCTACACGGATGAGTTGTGG+TGG + chr2_2:12980490-12980509 None:intergenic 50.0%
GGTTCTACACGGATGAGTTG+TGG + chr2_2:12980493-12980512 None:intergenic 50.0%
! GGATAGGGTTTCAGTGTTGG+GGG + chr2_2:12980620-12980639 None:intergenic 50.0%
GGGATAGGGTTTCAGTGTTG+GGG + chr2_2:12980621-12980640 None:intergenic 50.0%
GGTGACCATCAAGAAGGGAT+AGG + chr2_2:12980636-12980655 None:intergenic 50.0%
AGGACGGTGACCATCAAGAA+GGG + chr2_2:12980641-12980660 None:intergenic 50.0%
AAGGACGGTGACCATCAAGA+AGG + chr2_2:12980642-12980661 None:intergenic 50.0%
CAATCCTTGCATCGTATCGG+CGG - chr2_2:12980663-12980682 Msa0239000:intron 50.0%
CTCCTAACTCCCATCACAGA+TGG - chr2_2:12980733-12980752 Msa0239000:intron 50.0%
TCTTCACGAACCTCAGTAGG+AGG + chr2_2:12980772-12980791 None:intergenic 50.0%
TCGTCTTCACGAACCTCAGT+AGG + chr2_2:12980775-12980794 None:intergenic 50.0%
GTTCGTGAAGACGAACCTAC+AGG - chr2_2:12980781-12980800 Msa0239000:intron 50.0%
TAGTTTCGAGGTCAAGCGGT+GGG + chr2_2:12980903-12980922 None:intergenic 50.0%
TTAGTTTCGAGGTCAAGCGG+TGG + chr2_2:12980904-12980923 None:intergenic 50.0%
CTGTCTGTTACCGACGTTCA+TGG - chr2_2:12980940-12980959 Msa0239000:intron 50.0%
CCAGACTTTGCCATGAACGT+CGG + chr2_2:12980953-12980972 None:intergenic 50.0%
CGACGTTCATGGCAAAGTCT+GGG - chr2_2:12980951-12980970 Msa0239000:intron 50.0%
GTGGTGATCAGGTGTCTCAA+GGG + chr2_2:12981003-12981022 None:intergenic 50.0%
AGTGGTGATCAGGTGTCTCA+AGG + chr2_2:12981004-12981023 None:intergenic 50.0%
ATCCGCCGGCATACTAAGTT+CGG - chr2_2:12981120-12981139 Msa0239000:intron 50.0%
TACCGAACTTAGTATGCCGG+CGG + chr2_2:12981125-12981144 None:intergenic 50.0%
TAAGTTCGGTACTGCCGGTA+AGG - chr2_2:12981134-12981153 Msa0239000:intron 50.0%
AGAATCGGTTATGGAGGCAG+CGG - chr2_2:12981164-12981183 Msa0239000:CDS 50.0%
! AGCATGCGCCATGGACTATT+AGG + chr2_2:12981396-12981415 None:intergenic 50.0%
TATACCTCAAGCATGCGCCA+TGG + chr2_2:12981405-12981424 None:intergenic 50.0%
! GAGTTGTGGTGGAGACATGC+CGG + chr2_2:12980479-12980498 None:intergenic 55.0%
TCAACCGCCGATACGATGCA+AGG + chr2_2:12980670-12980689 None:intergenic 55.0%
CATCAGTATGAGGATCGGCG+AGG + chr2_2:12980696-12980715 None:intergenic 55.0%
ACTGATGTCGCGCAAGAACG+AGG + chr2_2:12980877-12980896 None:intergenic 55.0%
CCGACGTTCATGGCAAAGTC+TGG - chr2_2:12980950-12980969 Msa0239000:intron 55.0%
GAGTTTCGCCATGTCTACCG+TGG - chr2_2:12980973-12980992 Msa0239000:intron 55.0%
AGGGAGTTCCACGGTAGACA+TGG + chr2_2:12980984-12981003 None:intergenic 55.0%
GGTGTCTCAAGGGAGTTCCA+CGG + chr2_2:12980993-12981012 None:intergenic 55.0%
GGTGGATGCTAAGGTTGTCG+AGG - chr2_2:12981257-12981276 Msa0239000:CDS 55.0%
TAGTCCATGGCGCATGCTTG+AGG - chr2_2:12981398-12981417 Msa0239000:CDS 55.0%
! GAGTTGTGGTGGAGACATGC+CGG + chr2_2:12980479-12980498 None:intergenic 55.0%
TCAACCGCCGATACGATGCA+AGG + chr2_2:12980670-12980689 None:intergenic 55.0%
CATCAGTATGAGGATCGGCG+AGG + chr2_2:12980696-12980715 None:intergenic 55.0%
ACTGATGTCGCGCAAGAACG+AGG + chr2_2:12980877-12980896 None:intergenic 55.0%
CCGACGTTCATGGCAAAGTC+TGG - chr2_2:12980950-12980969 Msa0239000:intron 55.0%
GAGTTTCGCCATGTCTACCG+TGG - chr2_2:12980973-12980992 Msa0239000:intron 55.0%
AGGGAGTTCCACGGTAGACA+TGG + chr2_2:12980984-12981003 None:intergenic 55.0%
GGTGTCTCAAGGGAGTTCCA+CGG + chr2_2:12980993-12981012 None:intergenic 55.0%
GGTGGATGCTAAGGTTGTCG+AGG - chr2_2:12981257-12981276 Msa0239000:CDS 55.0%
TAGTCCATGGCGCATGCTTG+AGG - chr2_2:12981398-12981417 Msa0239000:CDS 55.0%
GCGCAGCACCGCCAAATCTT+TGG + chr2_2:12980514-12980533 None:intergenic 60.0%
!! AAGATTTGGCGGTGCTGCGC+CGG - chr2_2:12980514-12980533 Msa0239000:intron 60.0%
GGTTATGGAGGCAGCGGAGT+TGG - chr2_2:12981170-12981189 Msa0239000:CDS 60.0%
GCGCAGCACCGCCAAATCTT+TGG + chr2_2:12980514-12980533 None:intergenic 60.0%
!! AAGATTTGGCGGTGCTGCGC+CGG - chr2_2:12980514-12980533 Msa0239000:intron 60.0%
GGTTATGGAGGCAGCGGAGT+TGG - chr2_2:12981170-12981189 Msa0239000:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 12980457 12982115 12980457 ID=Msa0239000;Name=Msa0239000
chr2_2 mRNA 12980457 12982115 12980457 ID=Msa0239000-mRNA-1;Parent=Msa0239000;Name=Msa0239000-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0|0|0.5|1|1|2|0|337
chr2_2 exon 12981153 12982115 12981153 ID=Msa0239000-mRNA-1:exon:5507;Parent=Msa0239000-mRNA-1
chr2_2 exon 12980457 12980507 12980457 ID=Msa0239000-mRNA-1:exon:5506;Parent=Msa0239000-mRNA-1
chr2_2 CDS 12981153 12982115 12981153 ID=Msa0239000-mRNA-1:cds;Parent=Msa0239000-mRNA-1
chr2_2 CDS 12980457 12980507 12980457 ID=Msa0239000-mRNA-1:cds;Parent=Msa0239000-mRNA-1
Gene Sequence

>Msa0239000

ATGGTAGAACCAAATATTTCCGGCATGTCTCCACCACAACTCATCCGTGTAGAACCAAAGATTTGGCGGTGCTGCGCCGGACACTCCGTCAAAATTCCTAAACTTCATTCCAAAGTTTACTATTTCCCACAAGGTCACTTAGAACATGCTTGCCCTAATTCCCCCAACACTGAAACCCTATCCCTTCTTGATGGTCACCGTCCTTTCAATCCTTGCATCGTATCGGCGGTTGATTACCTCGCCGATCCTCATACTGATGAAGTCTTTGTCAAACTTCTCCTAACTCCCATCACAGATGGTTGTGTTCACAAACCTCCTACTGAGGTTCGTGAAGACGAACCTACAGGTGATGAAATTGTTTCCTCTGGAAAAACTCTAACCCTATCTGATGCTAATAACGGCGGTGCATTCTCTGTACCTCGTTCTTGCGCGACATCAGTCTTCCCACCGCTTGACCTCGAAACTAAACAGCCATCTCAAGAACTGTCTGTTACCGACGTTCATGGCAAAGTCTGGGAGTTTCGCCATGTCTACCGTGGAACTCCCTTGAGACACCTGATCACCACTAATTGGAGTAAGTTCGTGGACGAAAAGAAACTCGTCTGCGGCGATTCCATAATTTTTATGAAAAAGAAAGACTCATCTGGAGGTATGTTTGTTGGAATCCGCCGGCATACTAAGTTCGGTACTGCCGGTAAGGTAACTAAAGAATCGGTTATGGAGGCAGCGGAGTTGGCGAACAAGAACATCGCTTTTGAAGTTGAATATTATCCTACGGTTGAAGGGTTTTGTGATTTTGTGGTGGATGCTAAGGTTGTCGAGGATGCAATGAAGATTAACTGGAACTGTGGAATGAGAATTAAATTTTCTTTGAAGAATGATGATTCTTCAAAGAGATGGTCAGTTTTTAAGGGTACAATATCTGCACTCTCTGCTCCTAATAGTCCATGGCGCATGCTTGAGAAGTTGAAATGGGTCCAAAAGCTGTCTCACCGTTTGTTTACATATGCATAG
Protein sequence

>Msa0239000

MVEPNISGMSPPQLIRVEPKIWRCCAGHSVKIPKLHSKVYYFPQGHLEHACPNSPNTETLSLLDGHRPFNPCIVSAVDYLADPHTDEVFVKLLLTPITDGCVHKPPTEVREDEPTGDEIVSSGKTLTLSDANNGGAFSVPRSCATSVFPPLDLETKQPSQELSVTDVHGKVWEFRHVYRGTPLRHLITTNWSKFVDEKKLVCGDSIIFMKKKDSSGGMFVGIRRHTKFGTAGKVTKESVMEAAELANKNIAFEVEYYPTVEGFCDFVVDAKVVEDAMKINWNCGMRIKFSLKNDDSSKRWSVFKGTISALSAPNSPWRMLEKLKWVQKLSHRLFTYA*