AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0239640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0239640 MtrunA17_Chr2g0290391 88.953 697 32 2 1 654 1 695 0.0 1281
Msa0239640 MtrunA17_Chr1g0198761 42.722 632 286 6 54 625 48 663 4.92e-169 501
Msa0239640 MtrunA17_Chr2g0276841 40.385 624 309 5 53 625 70 681 3.05e-162 482
Msa0239640 MtrunA17_Chr2g0294841 36.447 653 349 5 27 625 21 661 2.25e-146 443
Msa0239640 MtrunA17_Chr5g0431001 44.780 431 221 3 52 475 60 480 2.38e-131 396
Msa0239640 MtrunA17_Chr5g0448761 28.463 657 378 17 51 635 58 694 6.98e-65 228
Msa0239640 MtrunA17_Chr1g0202341 28.646 576 336 10 51 569 49 606 2.75e-63 222
Msa0239640 MtrunA17_Chr1g0203051 24.955 557 342 11 59 559 85 621 1.88e-51 188
Msa0239640 MtrunA17_Chr1g0207551 26.079 579 348 14 53 573 34 590 4.45e-51 189
Msa0239640 MtrunA17_Chr3g0082121 26.246 602 351 15 32 573 23 591 7.89e-51 187
Msa0239640 MtrunA17_Chr2g0329031 27.663 582 321 14 50 567 11 556 9.02e-51 188
Msa0239640 MtrunA17_Chr5g0440451 24.887 663 382 17 53 634 43 670 3.58e-50 188
Msa0239640 MtrunA17_Chr8g0363841 26.562 576 344 13 54 569 18 574 4.16e-50 185
Msa0239640 MtrunA17_Chr3g0080351 25.399 626 362 18 51 609 74 661 9.13e-50 186
Msa0239640 MtrunA17_Chr6g0458391 25.650 577 332 14 53 570 225 763 3.71e-48 181
Msa0239640 MtrunA17_Chr6g0458391 32.031 128 77 4 51 175 89 209 3.36e-11 66.6
Msa0239640 MtrunA17_Chr2g0287651 26.506 415 287 6 59 472 81 478 3.80e-48 181
Msa0239640 MtrunA17_Chr5g0441581 25.325 616 358 14 30 580 9 587 7.64e-48 179
Msa0239640 MtrunA17_Chr2g0324011 23.702 578 370 7 53 575 10 571 1.16e-46 174
Msa0239640 MtrunA17_Chr2g0287061 25.724 587 311 17 51 577 181 702 7.42e-45 171
Msa0239640 MtrunA17_Chr2g0296781 24.610 577 349 17 57 570 1 554 7.52e-45 171
Msa0239640 MtrunA17_Chr6g0477261 24.783 460 262 10 177 570 2 443 1.46e-38 151
Msa0239640 MtrunA17_Chr3g0118611 27.532 385 216 6 240 567 118 496 1.79e-38 152
Msa0239640 MtrunA17_Chr5g0448511 25.570 395 238 6 243 582 15 408 2.58e-34 137
Msa0239640 MtrunA17_Chr1g0196541 25.901 444 294 11 57 492 1 417 3.51e-34 139
Msa0239640 MtrunA17_Chr2g0291591 24.353 464 326 10 41 501 52 493 6.30e-34 137
Msa0239640 MtrunA17_Chr2g0291581 26.039 457 295 11 52 501 70 490 4.22e-33 135
Msa0239640 MtrunA17_Chr1g0203721 22.476 614 386 18 30 573 31 624 8.06e-33 135
Msa0239640 MtrunA17_Chr1g0164591 26.562 320 214 5 141 459 9 308 1.53e-29 119
Msa0239640 MtrunA17_Chr3g0081281 44.660 103 47 1 194 296 1 93 2.75e-23 94.7
Msa0239640 MtrunA17_Chr7g0258861 25.753 299 195 8 53 343 10 289 1.95e-22 98.6
Msa0239640 MtrunA17_Chr7g0233911 33.835 133 82 3 28 157 7 136 6.08e-13 68.6
Msa0239640 MtrunA17_Chr2g0331371 38.235 102 60 2 65 165 67 166 1.95e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0239640 AT5G28530.3 53.904 666 262 3 5 627 8 671 0.0 731
Msa0239640 AT5G28530.2 53.904 666 262 3 5 627 8 671 0.0 731
Msa0239640 AT5G28530.1 53.582 670 262 3 5 627 8 675 0.0 730
Msa0239640 AT5G28530.5 47.297 666 243 5 5 627 8 608 0.0 601
Msa0239640 AT5G28530.4 47.015 670 243 5 5 627 8 612 0.0 600
Msa0239640 AT1G10240.2 39.699 665 329 8 30 635 24 675 5.67e-165 489
Msa0239640 AT1G10240.1 39.699 665 329 8 30 635 24 675 5.67e-165 489
Msa0239640 AT4G38180.1 29.223 592 346 11 51 584 71 647 8.01e-62 220
Msa0239640 AT4G15090.1 25.710 634 387 12 51 622 49 660 2.30e-58 211
Msa0239640 AT4G15090.5 25.710 634 387 12 51 622 49 660 2.30e-58 211
Msa0239640 AT4G15090.3 25.710 634 387 12 51 622 49 660 2.30e-58 211
Msa0239640 AT4G15090.2 25.710 634 387 12 51 622 49 660 2.30e-58 211
Msa0239640 AT4G15090.4 25.710 634 387 12 51 622 49 660 2.30e-58 211
Msa0239640 AT2G27110.2 26.452 620 335 18 30 579 19 587 1.67e-48 183
Msa0239640 AT2G27110.1 26.452 620 335 18 30 579 19 587 1.67e-48 183
Msa0239640 AT3G22170.2 24.915 586 337 16 51 570 68 616 6.64e-44 169
Msa0239640 AT3G22170.1 24.915 586 337 16 51 570 68 616 6.64e-44 169
Msa0239640 AT1G76320.3 25.516 678 386 21 57 653 1 640 1.48e-43 167
Msa0239640 AT3G06250.2 24.919 614 323 16 27 569 155 701 2.57e-43 167
Msa0239640 AT3G06250.1 24.919 614 323 16 27 569 155 701 2.57e-43 167
Msa0239640 AT3G06250.3 24.919 614 323 16 27 569 155 701 2.57e-43 167
Msa0239640 AT1G76320.2 25.551 681 382 22 57 653 1 640 3.03e-43 166
Msa0239640 AT1G76320.1 25.551 681 382 22 57 653 1 640 3.07e-43 166
Msa0239640 AT1G76320.4 25.551 681 382 22 57 653 1 640 3.07e-43 166
Msa0239640 AT5G18960.2 26.094 594 326 20 31 569 190 725 5.10e-42 163
Msa0239640 AT5G18960.1 26.094 594 326 20 31 569 190 725 5.10e-42 163
Msa0239640 AT2G27110.3 28.256 407 224 9 234 579 43 442 1.37e-40 158
Msa0239640 AT1G52520.1 26.696 457 294 14 52 501 84 506 1.74e-34 140
Msa0239640 AT4G19990.3 23.974 609 335 14 56 589 24 579 3.53e-33 136
Msa0239640 AT4G19990.4 23.974 609 335 14 56 589 24 579 3.53e-33 136
Msa0239640 AT4G19990.5 23.974 609 335 14 56 589 24 579 3.68e-33 136
Msa0239640 AT4G19990.7 23.974 609 335 14 56 589 38 593 4.17e-33 136
Msa0239640 AT4G19990.6 23.974 609 335 14 56 589 24 579 4.46e-33 136
Msa0239640 AT4G19990.2 23.974 609 335 14 56 589 24 579 4.46e-33 136
Msa0239640 AT2G32250.5 24.153 443 276 9 258 642 187 627 2.17e-32 134
Msa0239640 AT2G32250.2 24.153 443 276 9 258 642 187 627 2.52e-32 134
Msa0239640 AT2G32250.4 24.153 443 276 9 258 642 187 627 2.52e-32 134
Msa0239640 AT2G32250.6 24.153 443 276 9 258 642 187 627 2.87e-32 134
Msa0239640 AT2G32250.1 24.153 443 276 9 258 642 187 627 2.87e-32 134
Msa0239640 AT2G32250.3 24.153 443 276 9 258 642 187 627 2.87e-32 134
Msa0239640 AT2G32250.7 24.153 443 276 9 258 642 146 586 3.14e-32 133
Msa0239640 AT2G32250.8 24.153 443 276 9 258 642 146 586 3.18e-32 133
Msa0239640 AT1G80010.1 24.848 495 321 11 26 501 70 532 9.77e-32 132
Msa0239640 AT4G19990.1 23.260 546 306 12 104 589 30 522 5.04e-28 120
Msa0239640 AT4G38170.1 22.590 363 225 7 272 579 45 406 1.35e-22 102

Find 141 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCCAAATGGTTTCTGATTT+TGG 0.102866 2_2:-14161094 Msa0239640:CDS
ACATATTGATTTACTGTATT+TGG 0.114052 2_2:-14161056 Msa0239640:CDS
AAATTGTTGAATGTTTATTT+TGG 0.125158 2_2:+14162834 None:intergenic
AAGAAGGGTTTATATGTTTC+TGG 0.141357 2_2:-14162722 Msa0239640:intron
CAGAGGAATTTGAACTTAAA+TGG 0.181226 2_2:-14161117 Msa0239640:CDS
TTATCTGCTTTCACCGATTC+TGG 0.206477 2_2:+14162334 None:intergenic
TCTTATCGATCGATCACTTA+TGG 0.237164 2_2:-14161554 Msa0239640:CDS
AGGTGGACATTTGTCTTTCT+TGG 0.238238 2_2:-14161828 Msa0239640:CDS
AAGCCTTCAAACTAGCTATT+TGG 0.254902 2_2:+14159838 None:intergenic
CCATTTGCCCTCCTCTTAAC+CGG 0.277339 2_2:+14162121 None:intergenic
TGTGCATAATCACGAGCTTT+TGG 0.288154 2_2:-14161987 Msa0239640:CDS
TGTATTTGGTTCGAGCATAT+TGG 0.295799 2_2:-14161042 Msa0239640:CDS
GAAAAGGGAAAATGATGTTT+TGG 0.322914 2_2:-14161735 Msa0239640:CDS
GTATTTGGTTCGAGCATATT+GGG 0.334419 2_2:-14161041 Msa0239640:CDS
GCTTTCGAAAGCTGGGTTTC+CGG 0.342293 2_2:-14161894 Msa0239640:CDS
ATACTCTTGCTTTCGAAAGC+TGG 0.354980 2_2:-14161902 Msa0239640:CDS
TTCTTTCATCAGTTCTTTGC+GGG 0.358476 2_2:+14159951 None:intergenic
ATTGAATGTGGATTTAAATT+CGG 0.362006 2_2:+14161162 None:intergenic
TGCAAGGAATTTGAATCATC+GGG 0.363156 2_2:-14160195 Msa0239640:CDS
TACCAAACCACACTCCAAAA+AGG 0.366681 2_2:+14161528 None:intergenic
CTCAGGAAATTCACTTCTAA+TGG 0.369848 2_2:+14161264 None:intergenic
AACAATGTCCTTGTGGAGAT+TGG 0.375018 2_2:-14162408 Msa0239640:CDS
CCAGTGAATTTGCAAGGAAC+CGG 0.392417 2_2:-14162782 Msa0239640:five_prime_UTR
ATCAATTTCTCAAAATTTCA+AGG 0.394834 2_2:+14162912 None:intergenic
TTAAACACCATTCCAACATA+AGG 0.399971 2_2:+14162283 None:intergenic
CCGGTTAAGAGGAGGGCAAA+TGG 0.401347 2_2:-14162121 Msa0239640:CDS
TCTAGAATTAGCCCTCAATT+AGG 0.402768 2_2:-14162187 Msa0239640:CDS
GTCATCATCTGCTTCTTTCG+TGG 0.402884 2_2:+14161691 None:intergenic
AGGCATTGCTTAATGAGAAA+AGG 0.415782 2_2:-14161751 Msa0239640:CDS
TCTAATGGCATCTTTAAGTC+CGG 0.417527 2_2:+14161279 None:intergenic
TAAACACCATTCCAACATAA+GGG 0.418566 2_2:+14162284 None:intergenic
CCGGGTTTGCCCCGGTTAAG+AGG 0.420805 2_2:-14162132 Msa0239640:CDS
GAAAATATAGCTTGGTCATA+TGG 0.423296 2_2:-14161629 Msa0239640:CDS
CGGTTAAGAGGAGGGCAAAT+GGG 0.424227 2_2:-14162120 Msa0239640:CDS
CCACGTTTAAAGATCGTTCT+CGG 0.425296 2_2:+14160088 None:intergenic
GACATCTTCCTTTCATGAAC+CGG 0.427391 2_2:+14161329 None:intergenic
GAAAATGCTTGAGCTTGAAA+AGG 0.428355 2_2:-14161858 Msa0239640:CDS
GTCCAAAATCAGAAACCATT+TGG 0.428679 2_2:+14161092 None:intergenic
ATTTCTCAGCAATAAAACTT+TGG 0.431448 2_2:+14160049 None:intergenic
TGCTAAAATGTATCTGTCTA+AGG 0.437024 2_2:-14162056 Msa0239640:CDS
ACAAATACTACTTAAGTAGA+TGG 0.437071 2_2:-14160113 Msa0239640:CDS
TACTCTTGCTTTCGAAAGCT+GGG 0.437822 2_2:-14161901 Msa0239640:CDS
CATTTGCCCTCCTCTTAACC+GGG 0.440380 2_2:+14162122 None:intergenic
ATGGAGAGCGACACGTGTTA+TGG 0.440990 2_2:-14160248 Msa0239640:CDS
TCACCAAATAGCTAGTTTGA+AGG 0.443693 2_2:-14159841 None:intergenic
GTTAATAAGAATGTCGTGTT+TGG 0.444083 2_2:-14161599 Msa0239640:CDS
GAGCTTGAAAAGGGAATTCA+AGG 0.444538 2_2:-14161848 Msa0239640:CDS
CGATGCTTTGCAGCAAGAGT+TGG 0.446058 2_2:-14160343 Msa0239640:intron
CTACTTAAGTAGTATTTGTC+GGG 0.448293 2_2:+14160117 None:intergenic
CTTCAAAAGACGTATGGATT+CGG 0.455725 2_2:-14162435 Msa0239640:CDS
ACATTTGTCTTTCTTGGAAA+GGG 0.456261 2_2:-14161822 Msa0239640:CDS
CGTGTTATGGCTACCAGAAA+AGG 0.458295 2_2:-14160235 Msa0239640:CDS
AACCTTCTCATTCTCATCCA+TGG 0.461287 2_2:+14161652 None:intergenic
GTTCTTTCATCAGTTCTTTG+CGG 0.462201 2_2:+14159950 None:intergenic
CTAATGGCATCTTTAAGTCC+GGG 0.464686 2_2:+14161280 None:intergenic
CCTCGATGCAGGTGTTTCTC+CGG 0.467695 2_2:-14161348 Msa0239640:intron
TTCTAAACAAGGTATCTAGT+TGG 0.469074 2_2:-14161213 Msa0239640:CDS
ATGGGGAGCATCATAGAGAT+AGG 0.469186 2_2:-14162102 Msa0239640:CDS
CATAAAAGCATCTATAGACT+TGG 0.476239 2_2:+14160964 None:intergenic
GGCATTGCTTAATGAGAAAA+GGG 0.476407 2_2:-14161750 Msa0239640:CDS
CCGGTTCCTTGCAAATTCAC+TGG 0.476432 2_2:+14162782 None:intergenic
TTATCGATCCGGGTTTGCCC+CGG 0.478798 2_2:-14162140 Msa0239640:CDS
AGGTTCTGCAGCACCAGAAT+CGG 0.478841 2_2:-14162347 Msa0239640:CDS
CTGTCTAAGGAGGTTGTTGA+CGG 0.480756 2_2:-14162043 Msa0239640:CDS
GATATCATTACCCCTTATGT+TGG 0.483803 2_2:-14162295 Msa0239640:CDS
CCTCTTAACCGGGGCAAACC+CGG 0.485059 2_2:+14162132 None:intergenic
TCTACTTAAGTAGTATTTGT+CGG 0.487675 2_2:+14160116 None:intergenic
AAAATCACTGGATGCTCTTG+AGG 0.488028 2_2:-14162748 Msa0239640:five_prime_UTR
GACATTTGTCTTTCTTGGAA+AGG 0.490686 2_2:-14161823 Msa0239640:CDS
TGTCTAAGGAGGTTGTTGAC+GGG 0.496899 2_2:-14162042 Msa0239640:CDS
TGAGACTAAACACGTCATTC+CGG 0.497303 2_2:-14161245 Msa0239640:CDS
CGCTTGTAAACGCCTAATTG+AGG 0.499806 2_2:+14162175 None:intergenic
TTGCAAGGAATTTGAATCAT+CGG 0.500581 2_2:-14160196 Msa0239640:CDS
TCATGAATCTTCCGATAAGC+AGG 0.501312 2_2:+14161941 None:intergenic
AATTTCAAGGAAATAACTAC+AGG 0.503798 2_2:+14162925 None:intergenic
TGAACTTAAATGGAGCCAAA+TGG 0.503893 2_2:-14161107 Msa0239640:CDS
AAAATGCTTGAGCTTGAAAA+GGG 0.510249 2_2:-14161857 Msa0239640:CDS
CATTACCCCTTATGTTGGAA+TGG 0.512394 2_2:-14162290 Msa0239640:CDS
AGGTCAGATAGAATTGTTTG+TGG 0.513189 2_2:+14161307 None:intergenic
AATCATCGGGAATATTATGC+AGG 0.520423 2_2:-14160182 Msa0239640:CDS
GCCGTTAATCACAAAATCAC+TGG 0.522373 2_2:-14162760 Msa0239640:five_prime_UTR
CAATGGCTTCAAAAGACGTA+TGG 0.527901 2_2:-14162441 Msa0239640:CDS
CATCTTTAAGTCCGGGGTCA+AGG 0.529096 2_2:+14161287 None:intergenic
GCTTGTAAACGCCTAATTGA+GGG 0.531080 2_2:+14162176 None:intergenic
GGAATGACGTGTTTAGTCTC+AGG 0.531762 2_2:+14161247 None:intergenic
GAGGGTGATGATTCTGATGA+AGG 0.535697 2_2:-14162367 Msa0239640:CDS
GATGCTCTTGAGGAAGAAGA+AGG 0.535814 2_2:-14162738 Msa0239640:five_prime_UTR
TTCAGAATCATCAATTACAA+AGG 0.545164 2_2:-14159989 Msa0239640:CDS
GTGTTTCTCCGGTTCATGAA+AGG 0.545182 2_2:-14161337 Msa0239640:CDS
GGTTTGCCCCGGTTAAGAGG+AGG 0.546374 2_2:-14162129 Msa0239640:CDS
ACTTACTAGAATTCTTAATG+AGG 0.548103 2_2:-14159929 Msa0239640:CDS
GCTACATCTGAGCTGTATAA+CGG 0.548265 2_2:-14160303 Msa0239640:CDS
AAAGGTTATTCAGGAGAATG+AGG 0.549565 2_2:-14161771 Msa0239640:CDS
GATAGGAAATCAGTGAGGTG+TGG 0.551495 2_2:-14162085 Msa0239640:CDS
ACCGATGGGGTCGAGACCGA+TGG 0.554843 2_2:-14159889 Msa0239640:CDS
GTTTGCCCCGGTTAAGAGGA+GGG 0.554854 2_2:-14162128 Msa0239640:CDS
GAGATATGTCTAAGACCGAT+GGG 0.555361 2_2:-14159903 Msa0239640:CDS
GCGTTTCCAGTGAATTTGCA+AGG 0.555592 2_2:-14162788 Msa0239640:five_prime_UTR
AGAAGGTTGAAAATATAGCT+TGG 0.556814 2_2:-14161637 Msa0239640:CDS
AGAGATATGTCTAAGACCGA+TGG 0.562467 2_2:-14159904 Msa0239640:CDS
ATTCATGCTGCAAACTCCAT+CGG 0.569005 2_2:+14159873 None:intergenic
GGTTAAGAGGAGGGCAAATG+GGG 0.571064 2_2:-14162119 Msa0239640:CDS
ATTCTATCTGACCTTGACCC+CGG 0.577694 2_2:-14161298 Msa0239640:CDS
ACAAATACTCTGCTCTTGCA+AGG 0.578215 2_2:-14160211 Msa0239640:CDS
TACCATGGATGAGAATGAGA+AGG 0.581496 2_2:-14161654 Msa0239640:CDS
TCAAGCAGTGTAACAAACAA+TGG 0.589720 2_2:-14162458 Msa0239640:intron
CTTTCTTGGAAAGGGATGTG+AGG 0.596394 2_2:-14161814 Msa0239640:CDS
TTCAAGGAAATAACTACAGG+GGG 0.603409 2_2:+14162928 None:intergenic
AAATAACCTCTCACATAGGA+CGG 0.609297 2_2:+14161016 None:intergenic
TAATGGCATCTTTAAGTCCG+GGG 0.609613 2_2:+14161281 None:intergenic
GATTTAAATTCGGCATAACG+AGG 0.612578 2_2:+14161172 None:intergenic
GTCTAAGGAGGTTGTTGACG+GGG 0.619389 2_2:-14162041 Msa0239640:CDS
AAACACCATTCCAACATAAG+GGG 0.620023 2_2:+14162285 None:intergenic
CGGAAACAACAATGTCCTTG+TGG 0.620981 2_2:-14162415 Msa0239640:CDS
AAGCTGGGTTTCCGGTACAC+CGG 0.621789 2_2:-14161886 Msa0239640:CDS
TCGGCATAACGAGGCCCAAG+AGG 0.630511 2_2:+14161181 None:intergenic
TGGTTTGGTATCAATAGTTG+TGG 0.630835 2_2:-14161515 Msa0239640:CDS
ATGCTCTTGAGGAAGAAGAA+GGG 0.631598 2_2:-14162737 Msa0239640:five_prime_UTR
TCCATCGGTCTCGACCCCAT+CGG 0.633244 2_2:+14159888 None:intergenic
ATTTCAAGGAAATAACTACA+GGG 0.637231 2_2:+14162926 None:intergenic
GTGGAATAAGGCATTGAATG+TGG 0.639736 2_2:+14161150 None:intergenic
TGGAGTTTGCAGCATGAATG+TGG 0.649735 2_2:-14159869 Msa0239640:CDS
TAAAATGTATCTGTCTAAGG+AGG 0.650992 2_2:-14162053 Msa0239640:CDS
ATTTGCCCTCCTCTTAACCG+GGG 0.655790 2_2:+14162123 None:intergenic
TTGTTGACGGGGTTTCACAG+TGG 0.656963 2_2:-14162030 Msa0239640:CDS
TGGGCACCGTCCTATGTGAG+AGG 0.660526 2_2:-14161022 Msa0239640:CDS
TTTCAAGGAAATAACTACAG+GGG 0.663821 2_2:+14162927 None:intergenic
TTGTTTAGAATATTCCACAC+CGG 0.665129 2_2:+14161226 None:intergenic
CCGAGAACGATCTTTAAACG+TGG 0.667057 2_2:-14160088 Msa0239640:CDS
GGTGTGGAATATTCTAAACA+AGG 0.670977 2_2:-14161224 Msa0239640:CDS
AATGCCCATGAAAATGATTG+TGG 0.675484 2_2:+14161449 None:intergenic
TGCTTATCGGAAGATTCATG+AGG 0.681046 2_2:-14161939 Msa0239640:CDS
AGAACGATCTTTAAACGTGG+AGG 0.689325 2_2:-14160085 Msa0239640:CDS
CTTGAAAAGGGAATTCAAGG+TGG 0.689739 2_2:-14161845 Msa0239640:CDS
AAGTGTTACATTACAAACGA+GGG 0.690032 2_2:-14162385 Msa0239640:CDS
TAACACTTCCAATCTCCACA+AGG 0.707021 2_2:+14162400 None:intergenic
ATTCCACATCGAGAAAACAG+AGG 0.714783 2_2:-14161134 Msa0239640:CDS
GAAGTGTTACATTACAAACG+AGG 0.716498 2_2:-14162386 Msa0239640:CDS
CTAAACACGTCATTCCGGTG+TGG 0.723440 2_2:-14161240 Msa0239640:CDS
AGATATGTCTAAGACCGATG+GGG 0.747503 2_2:-14159902 Msa0239640:CDS
ATAGAGATAGGAAATCAGTG+AGG 0.812534 2_2:-14162090 Msa0239640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTATATCAAGAAAAAAT+GGG + chr2_2:14160172-14160191 None:intergenic 10.0%
!! TTATTTATATCAAGAAAAAA+TGG + chr2_2:14160173-14160192 None:intergenic 10.0%
!!! ATTTTGTTTAATTCATATTA+AGG - chr2_2:14160229-14160248 Msa0239640:CDS 10.0%
!!! TTTTGTTTAATTCATATTAA+GGG - chr2_2:14160230-14160249 Msa0239640:CDS 10.0%
!! AAAACCCAAAAAATATTAAA+CGG - chr2_2:14159908-14159927 Msa0239640:CDS 15.0%
!!! AATTGTTGAATGTTTATTTT+GGG + chr2_2:14159950-14159969 None:intergenic 15.0%
!!! AAATTGTTGAATGTTTATTT+TGG + chr2_2:14159951-14159970 None:intergenic 15.0%
!! TAATTCACAATTCATAAAAT+AGG - chr2_2:14162215-14162234 Msa0239640:CDS 15.0%
!! ATCAATTTCTCAAAATTTCA+AGG + chr2_2:14159873-14159892 None:intergenic 20.0%
!!! TTGAAATTTTGAGAAATTGA+TGG - chr2_2:14159872-14159891 Msa0239640:CDS 20.0%
!!! TGAAATTTTGAGAAATTGAT+GGG - chr2_2:14159873-14159892 Msa0239640:CDS 20.0%
!!! TTAATTCATATTAAGGGTTT+TGG - chr2_2:14160236-14160255 Msa0239640:CDS 20.0%
!! ATTGAATGTGGATTTAAATT+CGG + chr2_2:14161623-14161642 None:intergenic 20.0%
!!! ACATATTGATTTACTGTATT+TGG - chr2_2:14161726-14161745 Msa0239640:CDS 20.0%
!! ATAATTCATTAGAATGCATT+GGG + chr2_2:14162033-14162052 None:intergenic 20.0%
!!! GTCATTTTTATTGTATCTTA+CGG - chr2_2:14162178-14162197 Msa0239640:CDS 20.0%
!!! TGAAAATAAATTTTCAGCTT+GGG + chr2_2:14162777-14162796 None:intergenic 20.0%
! ATTTCAAGGAAATAACTACA+GGG + chr2_2:14159859-14159878 None:intergenic 25.0%
! AATTTCAAGGAAATAACTAC+AGG + chr2_2:14159860-14159879 None:intergenic 25.0%
!!! GAAATTTTGAGAAATTGATG+GGG - chr2_2:14159874-14159893 Msa0239640:CDS 25.0%
!!! AAATTTTGAGAAATTGATGG+GGG - chr2_2:14159875-14159894 Msa0239640:CDS 25.0%
!! TTTTGGGCTGTTTATTTATT+GGG + chr2_2:14159934-14159953 None:intergenic 25.0%
!! ATTTTGGGCTGTTTATTTAT+TGG + chr2_2:14159935-14159954 None:intergenic 25.0%
!!! TTTGGTTTTGTTGTTTCAAA+TGG - chr2_2:14160254-14160273 Msa0239640:CDS 25.0%
!!! TTGGTTTTGTTGTTTCAAAT+GGG - chr2_2:14160255-14160274 Msa0239640:CDS 25.0%
! AAATCGAAAAAAGGTTATTC+AGG - chr2_2:14161002-14161021 Msa0239640:CDS 25.0%
!!! CTTTGTTTATGATTTTACCA+TGG - chr2_2:14161113-14161132 Msa0239640:CDS 25.0%
! TAAAACACAACCGAAAAAAA+TGG + chr2_2:14161298-14161317 None:intergenic 25.0%
! CATAAGAGGAATATTTATGA+AGG + chr2_2:14161405-14161424 None:intergenic 25.0%
!!! TCTTTGTTTTGTATGGTTTT+CGG - chr2_2:14161929-14161948 Msa0239640:CDS 25.0%
! CATAATTCATTAGAATGCAT+TGG + chr2_2:14162034-14162053 None:intergenic 25.0%
! AAAAGATTGACTATACAATG+TGG + chr2_2:14162100-14162119 None:intergenic 25.0%
! CAATATACAAATCTTAGAAC+TGG - chr2_2:14162368-14162387 Msa0239640:CDS 25.0%
! TCTACTTAAGTAGTATTTGT+CGG + chr2_2:14162669-14162688 None:intergenic 25.0%
! ACAAATACTACTTAAGTAGA+TGG - chr2_2:14162669-14162688 Msa0239640:intron 25.0%
! ATTTCTCAGCAATAAAACTT+TGG + chr2_2:14162736-14162755 None:intergenic 25.0%
!!! AAAGTTTTATTGCTGAGAAA+TGG - chr2_2:14162735-14162754 Msa0239640:five_prime_UTR 25.0%
!! CTGAAAATAAATTTTCAGCT+TGG + chr2_2:14162778-14162797 None:intergenic 25.0%
! TTCAGAATCATCAATTACAA+AGG - chr2_2:14162793-14162812 Msa0239640:five_prime_UTR 25.0%
! ACTTACTAGAATTCTTAATG+AGG - chr2_2:14162853-14162872 Msa0239640:five_prime_UTR 25.0%
TTTCAAGGAAATAACTACAG+GGG + chr2_2:14159858-14159877 None:intergenic 30.0%
!!! TGGGCCGTTTAATATTTTTT+GGG + chr2_2:14159915-14159934 None:intergenic 30.0%
!!! TTGGGCCGTTTAATATTTTT+TGG + chr2_2:14159916-14159935 None:intergenic 30.0%
! TCCAGTGATTTTGTGATTAA+CGG + chr2_2:14160026-14160045 None:intergenic 30.0%
AAGAAGGGTTTATATGTTTC+TGG - chr2_2:14160060-14160079 Msa0239640:CDS 30.0%
ATGGGTTTATTGAATAAGCT+AGG + chr2_2:14160154-14160173 None:intergenic 30.0%
AAGTGTTACATTACAAACGA+GGG - chr2_2:14160397-14160416 Msa0239640:intron 30.0%
TAAACACCATTCCAACATAA+GGG + chr2_2:14160501-14160520 None:intergenic 30.0%
TTAAACACCATTCCAACATA+AGG + chr2_2:14160502-14160521 None:intergenic 30.0%
!!! GATTTTGTTTGTTATCGATC+CGG - chr2_2:14160631-14160650 Msa0239640:intron 30.0%
!!! ATTTTGTTTGTTATCGATCC+GGG - chr2_2:14160632-14160651 Msa0239640:intron 30.0%
TGCTAAAATGTATCTGTCTA+AGG - chr2_2:14160726-14160745 Msa0239640:intron 30.0%
TAAAATGTATCTGTCTAAGG+AGG - chr2_2:14160729-14160748 Msa0239640:intron 30.0%
AAAATGCTTGAGCTTGAAAA+GGG - chr2_2:14160925-14160944 Msa0239640:CDS 30.0%
ACATTTGTCTTTCTTGGAAA+GGG - chr2_2:14160960-14160979 Msa0239640:CDS 30.0%
CTTTGTGCAAAATCGAAAAA+AGG - chr2_2:14160993-14161012 Msa0239640:CDS 30.0%
! GAAAAGGGAAAATGATGTTT+TGG - chr2_2:14161047-14161066 Msa0239640:CDS 30.0%
AGAAGGTTGAAAATATAGCT+TGG - chr2_2:14161145-14161164 Msa0239640:CDS 30.0%
GAAAATATAGCTTGGTCATA+TGG - chr2_2:14161153-14161172 Msa0239640:CDS 30.0%
GTTAATAAGAATGTCGTGTT+TGG - chr2_2:14161183-14161202 Msa0239640:CDS 30.0%
! ATCACTTATGGATTCCTTTT+TGG - chr2_2:14161240-14161259 Msa0239640:CDS 30.0%
! AAACACCACAATCATTTTCA+TGG - chr2_2:14161328-14161347 Msa0239640:CDS 30.0%
! AACACCACAATCATTTTCAT+GGG - chr2_2:14161329-14161348 Msa0239640:CDS 30.0%
! TTGTTTAGAATATTCCACAC+CGG + chr2_2:14161559-14161578 None:intergenic 30.0%
! TTCTAAACAAGGTATCTAGT+TGG - chr2_2:14161569-14161588 Msa0239640:CDS 30.0%
CAGAGGAATTTGAACTTAAA+TGG - chr2_2:14161665-14161684 Msa0239640:CDS 30.0%
CAAAAAATAACCTCTCACAT+AGG + chr2_2:14161773-14161792 None:intergenic 30.0%
!!! CTATGTGAGAGGTTATTTTT+TGG - chr2_2:14161771-14161790 Msa0239640:CDS 30.0%
!! CATAAAAGCATCTATAGACT+TGG + chr2_2:14161821-14161840 None:intergenic 30.0%
AAAACAAAGAGCAAGCATAT+GGG + chr2_2:14161919-14161938 None:intergenic 30.0%
TATGAATCACCACTTAAACT+TGG - chr2_2:14162050-14162069 Msa0239640:CDS 30.0%
TAGGTATTCCATTTCAGATT+TGG - chr2_2:14162234-14162253 Msa0239640:CDS 30.0%
ATCAAGTTCCAAATCTGAAA+TGG + chr2_2:14162245-14162264 None:intergenic 30.0%
ATAGAAATGTCATAAGAGCA+TGG + chr2_2:14162275-14162294 None:intergenic 30.0%
! TTTTCATCCTCAATCACATA+AGG - chr2_2:14162340-14162359 Msa0239640:CDS 30.0%
TTGCAAGGAATTTGAATCAT+CGG - chr2_2:14162586-14162605 Msa0239640:intron 30.0%
CTACTTAAGTAGTATTTGTC+GGG + chr2_2:14162668-14162687 None:intergenic 30.0%
TTCAAGGAAATAACTACAGG+GGG + chr2_2:14159857-14159876 None:intergenic 35.0%
TCAAGCAGTGTAACAAACAA+TGG - chr2_2:14160324-14160343 Msa0239640:CDS 35.0%
CTTCAAAAGACGTATGGATT+CGG - chr2_2:14160347-14160366 Msa0239640:intron 35.0%
! GAAGTGTTACATTACAAACG+AGG - chr2_2:14160396-14160415 Msa0239640:intron 35.0%
GATATCATTACCCCTTATGT+TGG - chr2_2:14160487-14160506 Msa0239640:intron 35.0%
AAACACCATTCCAACATAAG+GGG + chr2_2:14160500-14160519 None:intergenic 35.0%
! GATGAAGCTTTTGAGCATTA+TGG - chr2_2:14160529-14160548 Msa0239640:intron 35.0%
!! TCTAGATCTTGCTTTTCTCA+TGG + chr2_2:14160581-14160600 None:intergenic 35.0%
! TCTAGAATTAGCCCTCAATT+AGG - chr2_2:14160595-14160614 Msa0239640:intron 35.0%
ATAGAGATAGGAAATCAGTG+AGG - chr2_2:14160692-14160711 Msa0239640:intron 35.0%
GAAAATGCTTGAGCTTGAAA+AGG - chr2_2:14160924-14160943 Msa0239640:CDS 35.0%
GACATTTGTCTTTCTTGGAA+AGG - chr2_2:14160959-14160978 Msa0239640:CDS 35.0%
AAAGGTTATTCAGGAGAATG+AGG - chr2_2:14161011-14161030 Msa0239640:CDS 35.0%
! AGGCATTGCTTAATGAGAAA+AGG - chr2_2:14161031-14161050 Msa0239640:CDS 35.0%
GGCATTGCTTAATGAGAAAA+GGG - chr2_2:14161032-14161051 Msa0239640:CDS 35.0%
TCTTATCGATCGATCACTTA+TGG - chr2_2:14161228-14161247 Msa0239640:CDS 35.0%
!! TGGTTTGGTATCAATAGTTG+TGG - chr2_2:14161267-14161286 Msa0239640:CDS 35.0%
!!! TGTGGCAGAACCATTTTTTT+CGG - chr2_2:14161285-14161304 Msa0239640:CDS 35.0%
!! TTTCGGTTGTGTTTTATTGC+AGG - chr2_2:14161302-14161321 Msa0239640:CDS 35.0%
AATGCCCATGAAAATGATTG+TGG + chr2_2:14161336-14161355 None:intergenic 35.0%
! ATCATTTTCATGGGCATTAC+AGG - chr2_2:14161338-14161357 Msa0239640:CDS 35.0%
CGAGGAATAATCATCATAAG+AGG + chr2_2:14161419-14161438 None:intergenic 35.0%
AGGTCAGATAGAATTGTTTG+TGG + chr2_2:14161478-14161497 None:intergenic 35.0%
TCTAATGGCATCTTTAAGTC+CGG + chr2_2:14161506-14161525 None:intergenic 35.0%
CTCAGGAAATTCACTTCTAA+TGG + chr2_2:14161521-14161540 None:intergenic 35.0%
GGTGTGGAATATTCTAAACA+AGG - chr2_2:14161558-14161577 Msa0239640:CDS 35.0%
GATTTAAATTCGGCATAACG+AGG + chr2_2:14161613-14161632 None:intergenic 35.0%
! TGTTTTCTCGATGTGGAATA+AGG + chr2_2:14161647-14161666 None:intergenic 35.0%
TGAACTTAAATGGAGCCAAA+TGG - chr2_2:14161675-14161694 Msa0239640:CDS 35.0%
! AGCCAAATGGTTTCTGATTT+TGG - chr2_2:14161688-14161707 Msa0239640:CDS 35.0%
GTCCAAAATCAGAAACCATT+TGG + chr2_2:14161693-14161712 None:intergenic 35.0%
! ATGGTTTCTGATTTTGGACT+TGG - chr2_2:14161694-14161713 Msa0239640:CDS 35.0%
! TGTATTTGGTTCGAGCATAT+TGG - chr2_2:14161740-14161759 Msa0239640:CDS 35.0%
! GTATTTGGTTCGAGCATATT+GGG - chr2_2:14161741-14161760 Msa0239640:CDS 35.0%
AAATAACCTCTCACATAGGA+CGG + chr2_2:14161769-14161788 None:intergenic 35.0%
!!! TTTGCGTAGCTTTTTTGAAC+AGG - chr2_2:14161867-14161886 Msa0239640:CDS 35.0%
!!! GCTTTTTTGAACAGGTATGT+TGG - chr2_2:14161875-14161894 Msa0239640:CDS 35.0%
CAAAACAAAGAGCAAGCATA+TGG + chr2_2:14161920-14161939 None:intergenic 35.0%
!!! TGCTTGCTCTTTGTTTTGTA+TGG - chr2_2:14161922-14161941 Msa0239640:CDS 35.0%
! TTTCTATTTCTCCCTTCTCA+TGG - chr2_2:14162288-14162307 Msa0239640:CDS 35.0%
TACAACAGTATCCATGAGAA+GGG + chr2_2:14162302-14162321 None:intergenic 35.0%
TGTACGACACTTCAAAAAGT+TGG - chr2_2:14162511-14162530 Msa0239640:intron 35.0%
!! CAGAGTATTTGTTCCTTTTC+TGG + chr2_2:14162563-14162582 None:intergenic 35.0%
TGCAAGGAATTTGAATCATC+GGG - chr2_2:14162587-14162606 Msa0239640:intron 35.0%
AATCATCGGGAATATTATGC+AGG - chr2_2:14162600-14162619 Msa0239640:intron 35.0%
TTCTTTCATCAGTTCTTTGC+GGG + chr2_2:14162834-14162853 None:intergenic 35.0%
GTTCTTTCATCAGTTCTTTG+CGG + chr2_2:14162835-14162854 None:intergenic 35.0%
! GTGATTTTGTGATTAACGGC+CGG + chr2_2:14160022-14160041 None:intergenic 40.0%
GCCGTTAATCACAAAATCAC+TGG - chr2_2:14160022-14160041 Msa0239640:CDS 40.0%
AAAATCACTGGATGCTCTTG+AGG - chr2_2:14160034-14160053 Msa0239640:CDS 40.0%
ATGCTCTTGAGGAAGAAGAA+GGG - chr2_2:14160045-14160064 Msa0239640:CDS 40.0%
CAATGGCTTCAAAAGACGTA+TGG - chr2_2:14160341-14160360 Msa0239640:intron 40.0%
AACAATGTCCTTGTGGAGAT+TGG - chr2_2:14160374-14160393 Msa0239640:intron 40.0%
TAACACTTCCAATCTCCACA+AGG + chr2_2:14160385-14160404 None:intergenic 40.0%
!! TTATCTGCTTTCACCGATTC+TGG + chr2_2:14160451-14160470 None:intergenic 40.0%
CATTACCCCTTATGTTGGAA+TGG - chr2_2:14160492-14160511 Msa0239640:intron 40.0%
! GGCAATTTTGCTAGAAAGCA+TGG - chr2_2:14160550-14160569 Msa0239640:intron 40.0%
GCTTGTAAACGCCTAATTGA+GGG + chr2_2:14160609-14160628 None:intergenic 40.0%
! TGTGCATAATCACGAGCTTT+TGG - chr2_2:14160795-14160814 Msa0239640:intron 40.0%
! TGCGTCTTTTACCTGCTTAT+CGG - chr2_2:14160830-14160849 Msa0239640:intron 40.0%
TCATGAATCTTCCGATAAGC+AGG + chr2_2:14160844-14160863 None:intergenic 40.0%
TGCTTATCGGAAGATTCATG+AGG - chr2_2:14160843-14160862 Msa0239640:intron 40.0%
ATACTCTTGCTTTCGAAAGC+TGG - chr2_2:14160880-14160899 Msa0239640:intron 40.0%
TACTCTTGCTTTCGAAAGCT+GGG - chr2_2:14160881-14160900 Msa0239640:intron 40.0%
! ATTTTCACTATCCGGTGTAC+CGG + chr2_2:14160910-14160929 None:intergenic 40.0%
! GCTCAAGCATTTTCACTATC+CGG + chr2_2:14160918-14160937 None:intergenic 40.0%
GAGCTTGAAAAGGGAATTCA+AGG - chr2_2:14160934-14160953 Msa0239640:CDS 40.0%
CTTGAAAAGGGAATTCAAGG+TGG - chr2_2:14160937-14160956 Msa0239640:CDS 40.0%
AGGTGGACATTTGTCTTTCT+TGG - chr2_2:14160954-14160973 Msa0239640:CDS 40.0%
TACCATGGATGAGAATGAGA+AGG - chr2_2:14161128-14161147 Msa0239640:CDS 40.0%
AACCTTCTCATTCTCATCCA+TGG + chr2_2:14161133-14161152 None:intergenic 40.0%
!!! ATGGATTCCTTTTTGGAGTG+TGG - chr2_2:14161247-14161266 Msa0239640:CDS 40.0%
!!! TTCCTTTTTGGAGTGTGGTT+TGG - chr2_2:14161252-14161271 Msa0239640:CDS 40.0%
TACCAAACCACACTCCAAAA+AGG + chr2_2:14161257-14161276 None:intergenic 40.0%
TGATGATTATTCCTCGATGC+AGG - chr2_2:14161423-14161442 Msa0239640:intron 40.0%
GACATCTTCCTTTCATGAAC+CGG + chr2_2:14161456-14161475 None:intergenic 40.0%
TAATGGCATCTTTAAGTCCG+GGG + chr2_2:14161504-14161523 None:intergenic 40.0%
CTAATGGCATCTTTAAGTCC+GGG + chr2_2:14161505-14161524 None:intergenic 40.0%
TGAGACTAAACACGTCATTC+CGG - chr2_2:14161537-14161556 Msa0239640:CDS 40.0%
!!! AGTTGGTTTTGTCTTCCTCT+TGG - chr2_2:14161586-14161605 Msa0239640:CDS 40.0%
!!! GTTGGTTTTGTCTTCCTCTT+GGG - chr2_2:14161587-14161606 Msa0239640:CDS 40.0%
!! GTGGAATAAGGCATTGAATG+TGG + chr2_2:14161635-14161654 None:intergenic 40.0%
ATTCCACATCGAGAAAACAG+AGG - chr2_2:14161648-14161667 Msa0239640:CDS 40.0%
! ATTCCTCTGTTTTCTCGATG+TGG + chr2_2:14161654-14161673 None:intergenic 40.0%
CAATGTGGACAACACAAAAG+TGG + chr2_2:14162085-14162104 None:intergenic 40.0%
CTACAACAGTATCCATGAGA+AGG + chr2_2:14162303-14162322 None:intergenic 40.0%
CTTCTCATGGATACTGTTGT+AGG - chr2_2:14162301-14162320 Msa0239640:CDS 40.0%
TCATGGATACTGTTGTAGGT+TGG - chr2_2:14162305-14162324 Msa0239640:CDS 40.0%
TGAGTCTCCTTATGTGATTG+AGG + chr2_2:14162350-14162369 None:intergenic 40.0%
!! TGCAAAGCATCGAAAGCATA+AGG + chr2_2:14162431-14162450 None:intergenic 40.0%
GCTACATCTGAGCTGTATAA+CGG - chr2_2:14162479-14162498 Msa0239640:intron 40.0%
CGACACTTCAAAAAGTTGGA+TGG - chr2_2:14162515-14162534 Msa0239640:intron 40.0%
ACAAATACTCTGCTCTTGCA+AGG - chr2_2:14162571-14162590 Msa0239640:intron 40.0%
CCACGTTTAAAGATCGTTCT+CGG + chr2_2:14162697-14162716 None:intergenic 40.0%
AGAACGATCTTTAAACGTGG+AGG - chr2_2:14162697-14162716 Msa0239640:intron 40.0%
! AGAGATATGTCTAAGACCGA+TGG - chr2_2:14162878-14162897 Msa0239640:five_prime_UTR 40.0%
! GAGATATGTCTAAGACCGAT+GGG - chr2_2:14162879-14162898 Msa0239640:five_prime_UTR 40.0%
! AGATATGTCTAAGACCGATG+GGG - chr2_2:14162880-14162899 Msa0239640:five_prime_UTR 40.0%
ATTCATGCTGCAAACTCCAT+CGG + chr2_2:14162912-14162931 None:intergenic 40.0%
GCGTTTCCAGTGAATTTGCA+AGG - chr2_2:14159994-14160013 Msa0239640:CDS 45.0%
CCAGTGAATTTGCAAGGAAC+CGG - chr2_2:14160000-14160019 Msa0239640:CDS 45.0%
GATGCTCTTGAGGAAGAAGA+AGG - chr2_2:14160044-14160063 Msa0239640:CDS 45.0%
CGGAAACAACAATGTCCTTG+TGG - chr2_2:14160367-14160386 Msa0239640:intron 45.0%
GAGGGTGATGATTCTGATGA+AGG - chr2_2:14160415-14160434 Msa0239640:intron 45.0%
CGCTTGTAAACGCCTAATTG+AGG + chr2_2:14160610-14160629 None:intergenic 45.0%
!! ATGGGGAGCATCATAGAGAT+AGG - chr2_2:14160680-14160699 Msa0239640:intron 45.0%
GATAGGAAATCAGTGAGGTG+TGG - chr2_2:14160697-14160716 Msa0239640:intron 45.0%
CTGTCTAAGGAGGTTGTTGA+CGG - chr2_2:14160739-14160758 Msa0239640:intron 45.0%
TGTCTAAGGAGGTTGTTGAC+GGG - chr2_2:14160740-14160759 Msa0239640:intron 45.0%
CTTTCTTGGAAAGGGATGTG+AGG - chr2_2:14160968-14160987 Msa0239640:CDS 45.0%
GTCATCATCTGCTTCTTTCG+TGG + chr2_2:14161094-14161113 None:intergenic 45.0%
GTGTTTCTCCGGTTCATGAA+AGG - chr2_2:14161445-14161464 Msa0239640:CDS 45.0%
ATTCTATCTGACCTTGACCC+CGG - chr2_2:14161484-14161503 Msa0239640:CDS 45.0%
GGAATGACGTGTTTAGTCTC+AGG + chr2_2:14161538-14161557 None:intergenic 45.0%
TTGGCGTCACCAAGTTTAAG+TGG + chr2_2:14162062-14162081 None:intergenic 45.0%
GTGGACAACACAAAAGTGGT+TGG + chr2_2:14162081-14162100 None:intergenic 45.0%
! TACCAATTGAAGAGCATGCG+CGG - chr2_2:14162393-14162412 Msa0239640:CDS 45.0%
CGTGTTATGGCTACCAGAAA+AGG - chr2_2:14162547-14162566 Msa0239640:intron 45.0%
CCGAGAACGATCTTTAAACG+TGG - chr2_2:14162694-14162713 Msa0239640:intron 45.0%
TGGAGTTTGCAGCATGAATG+TGG - chr2_2:14162913-14162932 Msa0239640:five_prime_UTR 45.0%
CCGGTTCCTTGCAAATTCAC+TGG + chr2_2:14160003-14160022 None:intergenic 50.0%
AGGTTCTGCAGCACCAGAAT+CGG - chr2_2:14160435-14160454 Msa0239640:intron 50.0%
ATTTGCCCTCCTCTTAACCG+GGG + chr2_2:14160662-14160681 None:intergenic 50.0%
CATTTGCCCTCCTCTTAACC+GGG + chr2_2:14160663-14160682 None:intergenic 50.0%
CCATTTGCCCTCCTCTTAAC+CGG + chr2_2:14160664-14160683 None:intergenic 50.0%
CGGTTAAGAGGAGGGCAAAT+GGG - chr2_2:14160662-14160681 Msa0239640:intron 50.0%
GGTTAAGAGGAGGGCAAATG+GGG - chr2_2:14160663-14160682 Msa0239640:intron 50.0%
GTCTAAGGAGGTTGTTGACG+GGG - chr2_2:14160741-14160760 Msa0239640:intron 50.0%
TTGTTGACGGGGTTTCACAG+TGG - chr2_2:14160752-14160771 Msa0239640:intron 50.0%
GCTTTCGAAAGCTGGGTTTC+CGG - chr2_2:14160888-14160907 Msa0239640:intron 50.0%
CATCTTTAAGTCCGGGGTCA+AGG + chr2_2:14161498-14161517 None:intergenic 50.0%
CTAAACACGTCATTCCGGTG+TGG - chr2_2:14161542-14161561 Msa0239640:CDS 50.0%
CGATGCTTTGCAGCAAGAGT+TGG - chr2_2:14162439-14162458 Msa0239640:CDS 50.0%
ATGGAGAGCGACACGTGTTA+TGG - chr2_2:14162534-14162553 Msa0239640:intron 50.0%
TTATCGATCCGGGTTTGCCC+CGG - chr2_2:14160642-14160661 Msa0239640:intron 55.0%
GTTTGCCCCGGTTAAGAGGA+GGG - chr2_2:14160654-14160673 Msa0239640:intron 55.0%
CCGGTTAAGAGGAGGGCAAA+TGG - chr2_2:14160661-14160680 Msa0239640:intron 55.0%
AAGCTGGGTTTCCGGTACAC+CGG - chr2_2:14160896-14160915 Msa0239640:intron 55.0%
CCTCGATGCAGGTGTTTCTC+CGG - chr2_2:14161434-14161453 Msa0239640:intron 55.0%
CTCCGCGCATGCTCTTCAAT+TGG + chr2_2:14162398-14162417 None:intergenic 55.0%
CCTCTTAACCGGGGCAAACC+CGG + chr2_2:14160653-14160672 None:intergenic 60.0%
GGTTTGCCCCGGTTAAGAGG+AGG - chr2_2:14160653-14160672 Msa0239640:intron 60.0%
CCGGAGAAACACCTGCATCG+AGG + chr2_2:14161437-14161456 None:intergenic 60.0%
TCGGCATAACGAGGCCCAAG+AGG + chr2_2:14161604-14161623 None:intergenic 60.0%
! TGGGCACCGTCCTATGTGAG+AGG - chr2_2:14161760-14161779 Msa0239640:CDS 60.0%
TCCATCGGTCTCGACCCCAT+CGG + chr2_2:14162897-14162916 None:intergenic 60.0%
CCGGGTTTGCCCCGGTTAAG+AGG - chr2_2:14160650-14160669 Msa0239640:intron 65.0%
ACCGATGGGGTCGAGACCGA+TGG - chr2_2:14162893-14162912 Msa0239640:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 14159843 14162961 14159843 ID=Msa0239640;Name=Msa0239640
chr2_2 mRNA 14159843 14162961 14159843 ID=Msa0239640-mRNA-1;Parent=Msa0239640;Name=Msa0239640-mRNA-1;_AED=0.07;_eAED=0.07;_QI=250|1|1|1|0.66|0.5|4|6|654
chr2_2 exon 14159843 14160352 14159843 ID=Msa0239640-mRNA-1:exon:5875;Parent=Msa0239640-mRNA-1
chr2_2 exon 14160916 14161359 14160916 ID=Msa0239640-mRNA-1:exon:5874;Parent=Msa0239640-mRNA-1
chr2_2 exon 14161445 14162472 14161445 ID=Msa0239640-mRNA-1:exon:5873;Parent=Msa0239640-mRNA-1
chr2_2 exon 14162723 14162961 14162723 ID=Msa0239640-mRNA-1:exon:5872;Parent=Msa0239640-mRNA-1
chr2_2 five_prime_UTR 14162723 14162961 14162723 ID=Msa0239640-mRNA-1:five_prime_utr;Parent=Msa0239640-mRNA-1
chr2_2 five_prime_UTR 14162462 14162472 14162462 ID=Msa0239640-mRNA-1:five_prime_utr;Parent=Msa0239640-mRNA-1
chr2_2 CDS 14161445 14162461 14161445 ID=Msa0239640-mRNA-1:cds;Parent=Msa0239640-mRNA-1
chr2_2 CDS 14160916 14161359 14160916 ID=Msa0239640-mRNA-1:cds;Parent=Msa0239640-mRNA-1
chr2_2 CDS 14159849 14160352 14159849 ID=Msa0239640-mRNA-1:cds;Parent=Msa0239640-mRNA-1
chr2_2 three_prime_UTR 14159843 14159848 14159843 ID=Msa0239640-mRNA-1:three_prime_utr;Parent=Msa0239640-mRNA-1
Gene Sequence

>Msa0239640

ATGGCTTCAAAAGACGTATGGATTCGGAAACAACAATGTCCTTGTGGAGATTGGAAGTGTTACATTACAAACGAGGGTGATGATTCTGATGAAGGTTCTGCAGCACCAGAATCGGTGAAAGCAGATAAAGATAAAACACTGTCTGATATCATTACCCCTTATGTTGGAATGGTGTTTAAGAGTGATGATGAAGCTTTTGAGCATTATGGCAATTTTGCTAGAAAGCATGGATTTTCCATGAGAAAAGCAAGATCTAGAATTAGCCCTCAATTAGGCGTTTACAAGCGTGATTTTGTTTGTTATCGATCCGGGTTTGCCCCGGTTAAGAGGAGGGCAAATGGGGAGCATCATAGAGATAGGAAATCAGTGAGGTGTGGATGTGATGCTAAAATGTATCTGTCTAAGGAGGTTGTTGACGGGGTTTCACAGTGGATTGTTCTGCAATTTAGTAATGTGCATAATCACGAGCTTTTGGAAGATGATCAAGTGCGTCTTTTACCTGCTTATCGGAAGATTCATGAGGCTGATCAAGAGCGTATACTCTTGCTTTCGAAAGCTGGGTTTCCGGTACACCGGATAGTGAAAATGCTTGAGCTTGAAAAGGGAATTCAAGGTGGACATTTGTCTTTCTTGGAAAGGGATGTGAGGAACTTTGTGCAAAATCGAAAAAAGGTTATTCAGGAGAATGAGGCATTGCTTAATGAGAAAAGGGAAAATGATGTTTTGGAACTTCTTGAGTTGTGCAAAGCCACGAAAGAAGCAGATGATGACTTTGTTTATGATTTTACCATGGATGAGAATGAGAAGGTTGAAAATATAGCTTGGTCATATGGTGATTCTGTTAATAAGAATGTCGTGTTTGGTGATGTAATTTATTTTGACACTTCTTATCGATCGATCACTTATGGATTCCTTTTTGGAGTGTGGTTTGGTATCAATAGTTGTGGCAGAACCATTTTTTTCGGTTGTGTTTTATTGCAGGACGAAACACCACAATCATTTTCATGGGCATTACAGGTGTTTCTCCGGTTCATGAAAGGAAGATGTCCACAAACAATTCTATCTGACCTTGACCCCGGACTTAAAGATGCCATTAGAAGTGAATTTCCTGAGACTAAACACGTCATTCCGGTGTGGAATATTCTAAACAAGGTATCTAGTTGGTTTTGTCTTCCTCTTGGGCCTCGTTATGCCGAATTTAAATCCACATTCAATGCCTTATTCCACATCGAGAAAACAGAGGAATTTGAACTTAAATGGAGCCAAATGGTTTCTGATTTTGGACTTGGTTCAGATAAACATATTGATTTACTGTATTTGGTTCGAGCATATTGGGCACCGTCCTATGTGAGAGGTTATTTTTTGGCTCGAATGTCAACAATAGCTTTTTCCAAGTCTATAGATGCTTTTATGAAAGAGATCGTCACTGAACATACATGTTTGCGTAGCTTTTTTGAACAGCAAGAGTTGGTGCTGACAATGCAATATGCTACATCTGAGCTGTATAACGGATCATATATTGTACGACACTTCAAAAAGTTGGATGGAGAGCGACACGTGTTATGGCTACCAGAAAAGGAACAAATACTCTGCTCTTGCAAGGAATTTGAATCATCGGGAATATTATGCAGGCACGCTCTTCGTATACTTGTAACAAAGAATTACTTTCAGCTTCCCGACAAATACTACTTAAGTAGATGGCACCGAGAACGATCTTTAAACGTGGAGGATGAGCATAACAACCAAAGTTTTATTGCTGAGAAATGGTTTCAAGAATATCAGTCCCAAGCTGAAAATTTATTTTCAGAATCATCAATTACAAAGGAGCGATCTGACTATGCCCGCAAAGAACTGATGAAAGAACTTACTAGAATTCTTAATGAGGTTAGAGATATGTCTAAGACCGATGGGGTCGAGACCGATGGAGTTTGCAGCATGAATGTGGCAGTTTCACCAAATAGCTAG
Protein sequence

>Msa0239640

MASKDVWIRKQQCPCGDWKCYITNEGDDSDEGSAAPESVKADKDKTLSDIITPYVGMVFKSDDEAFEHYGNFARKHGFSMRKARSRISPQLGVYKRDFVCYRSGFAPVKRRANGEHHRDRKSVRCGCDAKMYLSKEVVDGVSQWIVLQFSNVHNHELLEDDQVRLLPAYRKIHEADQERILLLSKAGFPVHRIVKMLELEKGIQGGHLSFLERDVRNFVQNRKKVIQENEALLNEKRENDVLELLELCKATKEADDDFVYDFTMDENEKVENIAWSYGDSVNKNVVFGDVIYFDTSYRSITYGFLFGVWFGINSCGRTIFFGCVLLQDETPQSFSWALQVFLRFMKGRCPQTILSDLDPGLKDAIRSEFPETKHVIPVWNILNKVSSWFCLPLGPRYAEFKSTFNALFHIEKTEEFELKWSQMVSDFGLGSDKHIDLLYLVRAYWAPSYVRGYFLARMSTIAFSKSIDAFMKEIVTEHTCLRSFFEQQELVLTMQYATSELYNGSYIVRHFKKLDGERHVLWLPEKEQILCSCKEFESSGILCRHALRILVTKNYFQLPDKYYLSRWHRERSLNVEDEHNNQSFIAEKWFQEYQSQAENLFSESSITKERSDYARKELMKELTRILNEVRDMSKTDGVETDGVCSMNVAVSPNS*